RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy810
(227 letters)
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 83.4 bits (206), Expect = 1e-18
Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 8/130 (6%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H + PN+ G + G Q+HSH+YRVPDPF+++ V+++G SG DI+ DI KVAK
Sbjct: 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAK 228
Query: 143 NVFLSHHISVAFKHQI----GDSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYK 197
V ++ S + ++ +++ +I +D S+VF++ D+I++CTG
Sbjct: 229 EVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTG--- 285
Query: 198 YSYKLTFLAT 207
Y Y FL T
Sbjct: 286 YKYHFPFLET 295
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 72.1 bits (177), Expect = 9e-15
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H S P IP + G D F+G +HS D+ P+ R + VL++G G S VDIA ++ +V
Sbjct: 140 TGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGA 199
Query: 143 NVFLS 147
+V LS
Sbjct: 200 SVTLS 204
>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like. This
family includes FMO proteins, cyclohexanone
mono-oxygenase and a number of different
mono-oxygenases.
Length = 532
Score = 64.4 bits (157), Expect = 5e-12
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 83 SSHNSVPNIP--SYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140
+ H++ P++P S+ G + F+G HS DY+ P+ F+ + VL++G G SG DIA+++ +
Sbjct: 146 TGHHTNPHLPLESFPGINKFKGQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRT 205
Query: 141 AKNVFLS 147
A VFLS
Sbjct: 206 AAQVFLS 212
Score = 31.3 bits (71), Expect = 0.42
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 162 VVQKPDIKRLLQDSVVFQDDT-SHPFDSIIYCTGAYKYSYKLTFL 205
V KP +K + S +F+D T D +I+ TG Y++ FL
Sbjct: 296 VKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATG---YTFSFPFL 337
>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase,
MSMEG_0569 family. Members of this protein family
belong to a conserved seven-gene biosynthetic cluster
found sparsely in Cyanobacteria, Proteobacteria, and
Actinobacteria. Distant homologies to characterized
proteins suggest that members are enzymes dependent on a
flavinoid cofactor.
Length = 400
Score = 46.6 bits (111), Expect = 4e-06
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 88 VPNIPSYEG---ADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV 144
VP IP AD+ LQ+HS +YR PD D VL+VG G SG IA D+ + V
Sbjct: 131 VPVIPPLAERLPADV---LQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKV 187
Query: 145 FLS 147
L+
Sbjct: 188 HLA 190
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 40.6 bits (96), Expect = 3e-04
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 107 SHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQ-- 164
SH Y+ P+ Q V++VG S VD A+++ + V + H ++ SV
Sbjct: 141 SHYYKEAHPYFGQKVVVVGGSNSAVDAALELYRKGAEVTMVH-----RGDEVSSSVKYWV 195
Query: 165 KPDIK 169
+PDI+
Sbjct: 196 RPDIE 200
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 35.0 bits (81), Expect = 0.016
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 87 SVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV 144
SVP P + GAD +H D + + V ++G G + +D A+++ + K+V
Sbjct: 138 SVPKPPGFPGADA---EGVHLVDVLERIDLKGKTVAVIGGGHTAIDAALNLLDLGKDV 192
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 34.2 bits (79), Expect = 0.038
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNV--------FLSHHISVA-FKHQIGDSVVQKP 166
F+ ++V+++G G S V+ A+ + K+AK V F + I V K + V+
Sbjct: 141 FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNT 200
Query: 167 DIKRLLQD---SVVFQD----DTSHPFDSIIYCTG 194
+K +L D VV ++ + P D + G
Sbjct: 201 VVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIG 235
>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring).
This is family of Rossmann fold oxidoreductases that
catalyzes the NADPH-dependent hydroxylation of lysine at
the N6 position, EC:1.14.13.59.
Length = 335
Score = 33.6 bits (78), Expect = 0.063
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 86 NSVPNIPSYEGADLFRGLQ----MHSHDY--RVPDPFRDQNVLLVGFGPSGVDIAMDI 137
+ P IP + + L HS +Y R P + + +VG G S +I +D+
Sbjct: 152 GTTPYIP-----ECAKPLPGERVFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDL 204
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 33.4 bits (77), Expect = 0.080
Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 40/167 (23%)
Query: 61 TKCLHFANEEITLHYNLLQSLPSSHN--SVPNIPSYEGA-----------DLFRGLQMHS 107
+ + AN L Y++L S + S + EGA + +
Sbjct: 83 RRKVLLANRP-PLSYDVL-----SLDVGSTTPLSGVEGAADLAVPVKPIENFLARWE-AL 135
Query: 108 HDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQI--GDSVVQK 165
+ P + + +VG G +GV+IA+ + + L +++ + G +
Sbjct: 136 LE-SADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVR 194
Query: 166 PDIKRLLQ-----------------DSVVFQDDTSHPFDSIIYCTGA 195
+ RLL +++ D + P D+I++ TGA
Sbjct: 195 RLVLRLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATGA 241
>gnl|CDD|227015 COG4669, EscJ, Type III secretory pathway, lipoprotein EscJ
[Intracellular trafficking and secretion].
Length = 246
Score = 31.6 bits (72), Expect = 0.25
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 131 VDIAMDIEKVAKNVFLSHHISVAFKHQIGDSV-VQKPDIKRLLQDSV 176
V I++ + L SV K+ ++ + IKRL+ +SV
Sbjct: 129 VHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQIKRLVANSV 175
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 31.6 bits (72), Expect = 0.35
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 170 RLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPN 221
RLL+ VV +D TSHP Y+ S + FL F + S N
Sbjct: 496 RLLKGIVVPEDGTSHP---------EYRSSLAVGFLFDFLSPLIESNAKSSN 538
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 29.5 bits (67), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFL 146
Q VL+VG G G ++AMD+ + K V L
Sbjct: 142 QRVLVVGGGLIGTELAMDLCRAGKAVTL 169
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of
other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Class III
myosins are motor proteins with an N-terminal kinase
catalytic domain and a C-terminal actin-binding motor
domain. Class III myosins are present in the
photoreceptors of invertebrates and vertebrates and in
the auditory hair cells of mammals. The kinase domain
of myosin III can phosphorylate several cytoskeletal
proteins, conventional myosin regulatory light chains,
and can autophosphorylate the C-terminal motor domain.
Myosin III may play an important role in maintaining
the structural integrity of photoreceptor cell
microvilli. It may also function as a cargo carrier
during light-dependent translocation, in photoreceptor
cells, of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated
protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4
or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are
involved in some MAPK signaling pathways by activating
a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each
MAPK cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAPK signaling cascades are important
in mediating cellular responses to extracellular
signals.
Length = 275
Score = 29.2 bits (66), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 69 EEITLHYNLLQSLPSSHNSVPNIPSYEGA 97
EEI YN+L+ S+H PNI ++ GA
Sbjct: 47 EEIKEEYNILRKY-SNH---PNIATFYGA 71
>gnl|CDD|187707 cd09611, Jacalin_ZG16_like, Jacalin-like lectin domain of the
zymogen granule protein 16 and related proteins. ZG16p
is a conserved secreted vertebrate protein with
tissue-specific expression profiles, which might play a
role in glycoprotein secretion, perhaps as a linker
protein that participates in the formation and/or
transport of the zymogen granule. Its paralog ZG16b
(PAUF) has been associated with roles in gene
regulation and cancer. This domain family also contains
mammalian proteins labelled as prostatic
spermine-binding protein (SBP) and salivary-gland
specific secreted proteins.
Length = 128
Score = 28.4 bits (64), Expect = 1.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 17 SEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWA 52
E PI +R S N+I I++++GS+W+
Sbjct: 12 GEGGGPITGIRVSVGNNYIK-----GIQVRYGSNWS 42
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 28.7 bits (65), Expect = 2.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
F+++ V +VG G S ++ A+ + ++AK V L H
Sbjct: 138 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVH 170
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 28.8 bits (64), Expect = 2.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 68 NEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQM 105
+EEI YN+LQSLP+ N V + AD G Q+
Sbjct: 62 DEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQL 99
>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 28.8 bits (65), Expect = 2.9
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 31/97 (31%)
Query: 114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS------------VAFKHQIGDS 161
+D+ VL++G G M E VAK+ + ++G
Sbjct: 174 GSLKDKKVLVIGAG------EM-GELVAKH-LAEKGVKKITIANRTLERAEELAKKLGAE 225
Query: 162 VVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKY 198
V ++ L + D +I T A
Sbjct: 226 AVALEELLEALAE-----------ADVVISSTSAPHP 251
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 28.2 bits (63), Expect = 4.1
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 26/88 (29%)
Query: 114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQK-----P-- 166
DP R VLL +GP G M + VA HH + F +G VQK P
Sbjct: 177 DPPR--GVLL--YGPPGTGKTMLAKAVA------HHTTATFIRVVGSEFVQKYLGEGPRM 226
Query: 167 --DIKRLLQD---SVVFQDDTSHPFDSI 189
D+ RL ++ S++F D+ DSI
Sbjct: 227 VRDVFRLARENAPSIIFIDEV----DSI 250
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 28.3 bits (63), Expect = 4.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 175 SVVFQDDTSHPFDSIIYCTGAY 196
V+F D T+ FD+++Y TG
Sbjct: 256 KVLFSDGTTELFDTVLYATGRK 277
>gnl|CDD|131900 TIGR02853, spore_dpaA, dipicolinic acid synthetase, A subunit.
This predicted Rossman fold-containing protein is the A
subunit of dipicolinic acid synthetase as found in most,
though not all, endospore-forming low-GC Gram-positive
bacteria; it is absent in Clostridium. The B subunit is
represented by TIGR02852. This protein is also known as
SpoVFA [Cellular processes, Sporulation and
germination].
Length = 287
Score = 27.8 bits (62), Expect = 5.1
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 91 IPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVF 145
IP+ EGA + + + D+ + NV+++GFG +G+ IA + VF
Sbjct: 131 IPTAEGAIM---MAIEHTDFTI----HGSNVMVLGFGRTGMTIARTFSALGARVF 178
>gnl|CDD|131758 TIGR02711, symport_actP, cation/acetate symporter ActP. Members of
this family belong to the Sodium:solute symporter
family. Both members of this family and other close
homologs tend to be encoded next to a member of Pfam
family pfam04341, a set of uncharacterized membrane
proteins. The characterized member from E. coli is
encoded near and cotranscribed with the acetyl coenzyme
A synthetase (acs) gene. Proximity to an acs gene was
used as one criterion for determining the trusted cutoff
for this model. Closely related proteins may differ in
function and are excluded by the high cutoffs of this
model; members of the family of phenylacetic acid
transporter PhaJ can score as high as 1011 bits
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 549
Score = 28.0 bits (62), Expect = 5.5
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 188 SIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPNPT 223
S+ Y TG Y Y LTF+ F + + NP
Sbjct: 296 SVFYATGFMGYFYILTFIIGFGAILLV----SANPE 327
>gnl|CDD|236717 PRK10572, PRK10572, DNA-binding transcriptional regulator AraC;
Provisional.
Length = 290
Score = 27.2 bits (61), Expect = 6.8
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 136 DIEKVAKNVFLS-HHISVAFKHQIGDSVVQ 164
DIE VA++V LS ++ F+ Q+G SV++
Sbjct: 201 DIESVAQHVCLSPSRLAHLFRQQLGISVLR 230
>gnl|CDD|221105 pfam11397, GlcNAc, Glycosyltransferase (GlcNAc). GlcNAc is an
enzyme that carries out the first glycosylation step of
hydroxylated Skp1, a ubiquitous eukaryotic protein, in
the cytoplasm.
Length = 321
Score = 27.3 bits (61), Expect = 7.4
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 1 MELTPSCLPSVLTTYNSEALQPI---RKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKF 57
+E S P VL+ Y QP +L ++ T F P +K S W
Sbjct: 124 LERLRSPKP-VLSHY-PPGYQPEKSDPELEKTTVTRMCFAEFTPYGIVKLRSRWITPATQ 181
Query: 58 SVPTKCLHFA 67
P A
Sbjct: 182 PSPLPQGFVA 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,558,242
Number of extensions: 1067253
Number of successful extensions: 842
Number of sequences better than 10.0: 1
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 28
Length of query: 227
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 134
Effective length of database: 6,812,680
Effective search space: 912899120
Effective search space used: 912899120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)