RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy810
(227 letters)
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 115 bits (290), Expect = 2e-30
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 83 SSHNSVPNIPSYEGADLFR----GLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIE 138
+ H VP IP+ +G D + G +HS +R P+ F ++VL+VG S D+ +
Sbjct: 173 NGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLT 232
Query: 139 KVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQD-SVVFQDDTSHP--FDSIIYCTGA 195
VAK+ + +S+ Q P+I + ++ D +IYCTG
Sbjct: 233 PVAKHPIYQSLLGGGDIQ--NESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTG- 289
Query: 196 YKYSYKLTFL 205
Y Y + F
Sbjct: 290 --YLYSVPFP 297
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 113 bits (284), Expect = 1e-29
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H S P +P +EG + F G +H+HD+R F+D+ VLLVG S DI K
Sbjct: 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 221
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKL 202
+S + + ++ ++ ++P++ R+ ++ F D +S D+II CTG Y +
Sbjct: 222 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG---YIHHF 278
Query: 203 TFL 205
FL
Sbjct: 279 PFL 281
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 110 bits (278), Expect = 4e-29
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 46/165 (27%)
Query: 85 HNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV 144
P Y+G + F G+Q+HS Y P PF V ++G G SG I ++ VA+
Sbjct: 130 TWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETT 189
Query: 145 FLS----HHI-----------------------------SVAFKHQIGDS---------- 161
+++ + F +
Sbjct: 190 WITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV 249
Query: 162 VVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA 206
+ P R + + D T FD++I+CTG + L+ L
Sbjct: 250 LAAVPPPARFSPTGMQWADGTERAFDAVIWCTG---FRPALSHLK 291
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 62.9 bits (153), Expect = 7e-12
Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 35/135 (25%)
Query: 87 SVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFL 146
+ P P G +H + D F +++G SG D A + K ++ L
Sbjct: 143 NFPKKPFKYG--------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIAL 194
Query: 147 SHHISVAFKHQIGDSVVQKPDIKRLLQD--------------------------SVVFQD 180
+ SV P ++ L + + F
Sbjct: 195 YTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDS 254
Query: 181 DTSH-PFDSIIYCTG 194
S I TG
Sbjct: 255 GQSVHTPHEPILATG 269
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 52.6 bits (127), Expect = 2e-08
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 88 VPNIPSYEGADLFRGLQMHSHDYRVPDP--FRDQNVLLVGFGPSGVDIAMDIEKVAKNVF 145
P E A+ + G +H Y V D F + V ++G G S VD A+ +E +AK V
Sbjct: 125 KPRKLELENAEQYEGKNLH---YFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVS 181
Query: 146 LSH 148
+ H
Sbjct: 182 IIH 184
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 52.6 bits (127), Expect = 2e-08
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 88 VPNIPSYEGADLFRGLQMHSHDYRVPDP--FRDQNVLLVGFGPSGVDIAMDIEKVAKNVF 145
P G F G ++ Y V F+ + VL+VG G S VD A+++ A+ +
Sbjct: 123 EPRRIGAPGEREFEGRGVY---YAVKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRIT 179
Query: 146 LSH 148
L H
Sbjct: 180 LIH 182
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 50.4 bits (121), Expect = 1e-07
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 91 IPSYEGADLFRGLQMHSHDYRVPDP--FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
+P D G ++ Y V F+ + V++VG G S +D + + K A +V L H
Sbjct: 137 LPQLGNIDHLTGSSVY---YAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVH 193
Query: 149 H 149
Sbjct: 194 R 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 2e-06
Identities = 42/270 (15%), Positives = 72/270 (26%), Gaps = 97/270 (35%)
Query: 9 PSVLTTYNSEALQPIRKLRES----QPTNFISI-----------AFIPCIEIK------F 47
V YN LQP KLR++ +P + I A C+ K F
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 48 GSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIP--SYEGADLFRGLQM 105
W ++ + P L L Y + + S + NI + R L +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-L 238
Query: 106 HSHDY-------------RVPDPF----------RDQNVLLVGFGPSGVDIAMDIEKV-- 140
S Y + + F R + V + I++D +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 141 ----AKNVF----------LSH--------HISV---------------------AFKHQ 157
K++ L +S+
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 158 IGDSV-VQKP-DIKRLLQDSVVFQDDTSHP 185
I S+ V +P + +++ VF P
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Score = 30.6 bits (68), Expect = 0.42
Identities = 25/193 (12%), Positives = 56/193 (29%), Gaps = 74/193 (38%)
Query: 66 FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV---- 121
F E + ++Y L S + PS ++ ++ Y F NV
Sbjct: 82 FVEEVLRINYKFLMS---PIKTEQRQPSMM-TRMY--IEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 122 -----------------LLV----GFGPS--GVDIAMDIEKVAKNVFLSHHISVA----- 153
+L+ G G + +D+ + + K F +++
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 154 ---------FKHQIGDSVVQKPD---------------IKRLLQ-----DSVVFQDDTSH 184
+QI + + D ++RLL+ + ++ + +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 185 P-----FDSIIYC 192
F+ + C
Sbjct: 256 AKAWNAFN--LSC 266
Score = 29.8 bits (66), Expect = 0.87
Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 56/169 (33%)
Query: 15 YNSEALQPIRK--LRESQPT----NFISIA-F-----IPCIEIKFGSSWAEIEKFSVPTK 62
N + L I + L +P F ++ F IP I W ++ K V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILLSLIWFDVIKSDVM-- 405
Query: 63 CLHFANEEITLH-YNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHS------HD-----Y 110
N+ LH Y+L++ P + ++ L++ H Y
Sbjct: 406 --VVVNK---LHKYSLVEKQPKES-------TISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 111 RVPDPFRDQNVLLVGFGPSGVD--IAMDIEKVAKNVFLSHHISVAFKHQ 157
+P F D + P +D + HH+ +
Sbjct: 454 NIPKTF-DSD----DLIPPYLDQYFYS---------HIGHHLKNIEHPE 488
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 46.2 bits (109), Expect = 3e-06
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 87 SVPNIPSYEGADLFRGLQMHSHDY------RVPDPFRDQNVLLVGFGPSGVDIAMDI 137
P IP A G H Y + + + ++G G S + +D+
Sbjct: 190 GTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDL 246
Score = 27.4 bits (60), Expect = 4.2
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 160 DSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA 206
+ L + + +D++I TG Y+ L
Sbjct: 340 ERATATAQGIELALRDAGSGELSVETYDAVILATG-YERQLHRQLLE 385
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 45.6 bits (109), Expect = 4e-06
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS------VAFKHQIGDSVVQKPDIK 169
+ ++ P + A+ + + F ++ I A G V I+
Sbjct: 139 LDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTR-IR 197
Query: 170 RLL-QDSVVFQDDTSHPFD 187
+ VV D S
Sbjct: 198 EIAGHADVVLADGRSIALA 216
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 41.8 bits (99), Expect = 1e-04
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 87 SVPNIPSYEGADLFRGLQMHS----HDYRVPDP---FRDQNVLLVGFGPSGVDIAMDIEK 139
S +P +G D F+G HS D F + V ++G G +GV I +
Sbjct: 147 SASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAE 206
Query: 140 VAKN--VF 145
AK VF
Sbjct: 207 TAKELYVF 214
Score = 29.1 bits (66), Expect = 1.4
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 168 IKRLLQDSVVFQDDTSHPFDSIIYCTG 194
I+ + + + D ++ D IIY TG
Sbjct: 363 IQEVTPEGIKT-ADAAYDLDVIIYATG 388
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 39.5 bits (93), Expect = 5e-04
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 87 SVPNIPSYEGADLFRGLQMHS----HDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
S N P+ G D F G +H+ + V ++G G +G + + +
Sbjct: 147 SAINFPNLPGLDTFEGETIHTAAWPEGK----SLAGRRVGVIGTGSTGQQVITSLAPEVE 202
Query: 143 N--VF 145
+ VF
Sbjct: 203 HLTVF 207
Score = 33.7 bits (78), Expect = 0.046
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 168 IKRLLQDSVVFQDDTSHPFDSIIYCTG 194
I+ + VV +D H D +++ TG
Sbjct: 355 IREVTAKGVVTEDGVLHELDVLVFATG 381
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 36.4 bits (85), Expect = 0.006
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 87 SVPNIPSYEGADLFRGLQMHS----HDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
S N P+++G D F G +H+ HD D F + V ++G G SG+ I + A+
Sbjct: 159 SNANTPAFDGLDRFTGDIVHTARWPHDG--VD-FTGKRVGVIGTGSSGIQSIPIIAEQAE 215
Query: 143 N--VF 145
VF
Sbjct: 216 QLFVF 220
Score = 31.0 bits (71), Expect = 0.31
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 168 IKRLLQDSVVFQDDTSHPFDSIIYCTG 194
I + + +V + D I+ TG
Sbjct: 368 IVGMDETGIVT-TGAHYDLDMIVLATG 393
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 36.0 bits (84), Expect = 0.008
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 87 SVPNIPSYEGADLFRGLQMHS----HDYRVPDPFRDQNVLLVGFGPSGV 131
SVP +P++ G F G H+ H+ D F Q V ++G G SG+
Sbjct: 154 SVPQLPNFPGLKDFAGNLYHTGNWPHEP--VD-FSGQRVGVIGTGSSGI 199
Score = 30.2 bits (69), Expect = 0.57
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 168 IKRLLQDSVVFQDDTSHPFDSIIYCTG 194
I+ + V + + DS++ TG
Sbjct: 363 IETITPRGVRT-SEREYELDSLVLATG 388
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 35.0 bits (81), Expect = 0.015
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
F+ + V ++G G SGV+ A+D+ + ++V L
Sbjct: 353 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 385
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 34.8 bits (81), Expect = 0.016
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
F+ + V+ +G G SG A+ + + KNV +
Sbjct: 153 FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIE 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.019
Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 53/202 (26%)
Query: 45 IKFGSSWAEIE-KFSVPTKCLHFANEEITLHYNLLQSLPSSHNSV--PNIPSYEGADLF- 100
+ GS +E VPT F + L + LP + P+ A+L
Sbjct: 11 LSHGS----LEHVLLVPTA-SFFIASQ--LQEQFNKILPEPTEGFAADDEPTTP-AELVG 62
Query: 101 RGLQMHSHDYRVPDPFRDQNVLLVGFGP------SGVDI-AMDIEKVAKNVFLSHHISVA 153
+ L S + VL + G DI A +A + + ++
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-----LAAKLLQENDTTLV 117
Query: 154 FKHQI------GDSVVQKPDIKR----LLQDS--------VVF--QDDTSHPFD--SIIY 191
++ + ++P K+ L + +F Q +T F+ +Y
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 192 CTGAYKYSYKLTFLATFSISMA 213
T Y + A
Sbjct: 178 QT--YH-----VLVGDLIKFSA 192
Score = 31.2 bits (70), Expect = 0.32
Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 68/188 (36%)
Query: 2 ELTPSCLPSVLTTYNSEALQP-IRKLRESQPTNF-ISIA-------FIPCIEIKFGSSWA 52
E PS + S+ + E +Q + K P + I+ + G +
Sbjct: 332 EGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-----GPPQS 385
Query: 53 ------EIEKFSVPTKC----LHFANEEITLHYNLLQ-SLP--SSH--NSVPNIPSYEGA 97
+ K P+ + F+ ++ L + P S + I
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN----K 441
Query: 98 DLFR-GLQMHSHDYRVP--DPF-----R--DQNVL------------------------L 123
DL + + ++ D ++P D F R ++ +
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 124 VGFGPSGV 131
+ FGP G
Sbjct: 502 LDFGPGGA 509
Score = 30.4 bits (68), Expect = 0.51
Identities = 42/250 (16%), Positives = 78/250 (31%), Gaps = 94/250 (37%)
Query: 9 PSVLTTYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAE--IEKFSVPTKCLHF 66
P LT + + +++RE N+ ++ F ++ G E ++ + + F
Sbjct: 1669 PVNLTIHFGG--EKGKRIRE----NYSAMIFETIVD---GKLKTEKIFKEINEHSTSYTF 1719
Query: 67 ANEEITLH----------------YNLLQS---LPSS-----HNSVPNIPS---Y----- 94
+E+ L + L+S +P+ H S Y
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH-------SLGEYAALAS 1772
Query: 95 --------EGADL--FRGLQMHSHDYRVP-DPFRDQNVLLVGFGPSGVDIAMD------- 136
++ +RG+ M VP D N ++ P V +
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQV---AVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 137 IEKVAKNVFLSHHISVA-F---KHQI---GDSV-------------VQKPDIKRLLQDSV 176
+E+V K + + + Q GD +QK DI LQ S+
Sbjct: 1830 VERVGKRT--GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE-LQKSL 1886
Query: 177 VFQDDTSHPF 186
++ H F
Sbjct: 1887 SLEEVEGHLF 1896
Score = 28.9 bits (64), Expect = 1.6
Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 70/210 (33%)
Query: 2 EL-----TPSCLPSVLTTYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEK 56
EL T L L +++E L + +R + + F + I W +E
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSEL--IRTTLDAEKV---FTQGLNIL---EW--LEN 221
Query: 57 --------------FSVP----TKCLHFANEEITLHYN---LLQSLPSSHNSVPNIPS-- 93
S P + H+ L + L L + + +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 94 -----------YEGAD-----LF----RGLQMHSHDYRVPDPFRDQNVLLVGFG-PS--- 129
+ LF R + + + P D L G PS
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS--LENNEGVPSPML 339
Query: 130 ---GVD---IAMDIEKVAKNVFLSHHISVA 153
+ + + K ++ + ++
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 33.6 bits (78), Expect = 0.036
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
F+ + V ++G G SGV+ A+D+ + ++V L
Sbjct: 142 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 174
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.12
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 15/39 (38%)
Query: 21 QPIRKLRES----QPTNFISIAFIPCIEIKFGSSWAEIE 55
Q ++KL+ S + A P + IK A +E
Sbjct: 20 QALKKLQASLKLYADDS----A--PALAIK-----ATME 47
Score = 30.7 bits (68), Expect = 0.22
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 164 QKPDIKRLLQDSV-VFQDDTSHP 185
+K +K+ LQ S+ ++ DD S P
Sbjct: 18 EKQALKK-LQASLKLYADD-SAP 38
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 31.0 bits (71), Expect = 0.29
Identities = 8/87 (9%), Positives = 27/87 (31%), Gaps = 15/87 (17%)
Query: 116 FRDQNVLLVGFGPSGV-DIAMDIEKVAKNVFLSHH-------ISVAFKHQIGDSVVQKPD 167
+DQ ++++ + + + ++ ++ + I ++ V+ +
Sbjct: 144 LKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDELSNK-NIPVITES- 201
Query: 168 IKRLLQD-----SVVFQDDTSHPFDSI 189
I+ L + V F
Sbjct: 202 IRTLQGEGGYLKKVEFHSGLRIERAGG 228
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 28.2 bits (64), Expect = 1.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
F+++ V ++G G S ++ A + + V+L H
Sbjct: 152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIH 184
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 27.8 bits (63), Expect = 3.1
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
++++ V ++G G + V+ A+ + + K V+L H
Sbjct: 141 YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIH 173
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 27.8 bits (62), Expect = 3.7
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 16/91 (17%)
Query: 110 YRVPDPFRDQ------NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVV 163
+ F+ + +V + G D++ + K +++ I + +I
Sbjct: 187 LMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKI----- 241
Query: 164 QKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
K + + +V + + P D I
Sbjct: 242 -----KEIREHEIVDEKGNTIPADITILLPP 267
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 27.1 bits (61), Expect = 4.4
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
++ + V+++G G + V+ M + K A V + H
Sbjct: 150 YKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIH 182
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 27.1 bits (61), Expect = 4.4
Identities = 6/33 (18%), Positives = 20/33 (60%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
++++ V ++G G + ++ A+ + + ++L H
Sbjct: 145 YKNKEVAVLGGGDTALEEALYLANICSKIYLIH 177
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 27.1 bits (61), Expect = 4.8
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
FR++ + ++G G S ++ A + K V++ H
Sbjct: 157 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 189
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 27.1 bits (61), Expect = 5.0
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
FRDQ++ ++G G S ++ A + + A++V L H
Sbjct: 153 FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVH 185
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 26.7 bits (60), Expect = 6.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
FR++ + ++G G S + A + K VF+
Sbjct: 171 FRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLV 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 26.6 bits (58), Expect = 7.0
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 14 TYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEIT- 72
Y E LQ L+ P A++ + KF + ++ + LH A++++T
Sbjct: 399 LYEKETLQYFSTLKAVDPMR---AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455
Query: 73 --------------LHYNLLQSLPSSHNSVPNI 91
L +N L++LP + ++ +
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCL 488
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 26.3 bits (59), Expect = 7.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
+R+Q V ++G G + V+ A+ + +A V L H
Sbjct: 143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,451,437
Number of extensions: 198047
Number of successful extensions: 699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 54
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)