RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy810
         (227 letters)



>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase
           SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
          Length = 107

 Score = 86.6 bits (214), Expect = 1e-22
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 88  VPNIPSYEG-ADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFL 146
           +PNI   +  A    G  +HS  +R P+ F  ++VL+VG   S  D+   +  VAK+   
Sbjct: 1   IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIY 60

Query: 147 SHHISVAFKHQIGDSVVQKPDIKRLLQD--SVVFQDDTS-HPFDSIIYC 192
              +         +S+ Q P+I +       +  +        D +IYC
Sbjct: 61  QSLLGGGDIQN--ESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 107


>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase
           {Thermobifida fusca [TaxId: 2021]}
          Length = 235

 Score = 64.4 bits (155), Expect = 3e-13
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 88  VPNIPSYEGADLFRGLQMHSHDY-RVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFL 146
           VP +P++ G   F G   H+ ++   P  F  Q V ++G G SG+ ++  I K A  +F+
Sbjct: 1   VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV 60

Query: 147 SHH 149
              
Sbjct: 61  FQR 63



 Score = 35.5 bits (80), Expect = 0.003
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 158 IGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
           +         I+ +    V    +  +  DS++  TG
Sbjct: 199 VHLVDTLSAPIETITPRGVRT-SEREYELDSLVLATG 234


>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase
           {Pyrococcus furiosus [TaxId: 2261]}
          Length = 122

 Score = 30.0 bits (67), Expect = 0.089
 Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 88  VPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLS 147
            P I   E     R +     D            +++G G  G+++A ++ +   +V L 
Sbjct: 4   EPQIKGKEYLLTLRTIF--DADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLI 61

Query: 148 HHISV-----AFKHQIGDSVVQKPDIKRLLQDSV-------VFQDDTSHPFDSIIYCTG 194
           H  ++          +   ++++  +K  L   +       V  +         I   G
Sbjct: 62  HRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNSGFIEGKVKICAIG 120


>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase,
           BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
          Length = 121

 Score = 29.7 bits (66), Expect = 0.13
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 25/125 (20%)

Query: 91  IPSYEGADL----FRGLQMHSHDYR--VPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV 144
           +P+ +GA +     R L     D R           +L+VG G  G+++A        +V
Sbjct: 1   LPTLQGATMPVHTLRTL----EDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHV 56

Query: 145 FLSHHISVAFKHQI---------------GDSVVQKPDIKRLLQDSVVFQDDTSHPFDSI 189
            L                           G  +  +  +   +   V+  D T    D +
Sbjct: 57  SLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMV 116

Query: 190 IYCTG 194
           +   G
Sbjct: 117 VVGIG 121


>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score = 29.3 bits (65), Expect = 0.17
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 88  VPNIPSYEGADLFRGLQMHSHDYRVPDP--FRDQNVLLVGFGPSGVDIAMDIEKVAKNVF 145
           +P+  +++G    RG+          D   +R+Q V ++G G + V+ A+ +  +A  V 
Sbjct: 3   LPSEEAFKG----RGV----SACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVH 54

Query: 146 LSHH 149
           L H 
Sbjct: 55  LIHR 58


>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
           ligase MurD {Escherichia coli [TaxId: 562]}
          Length = 93

 Score = 27.0 bits (59), Expect = 0.70
 Identities = 5/33 (15%), Positives = 14/33 (42%)

Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
           ++ +NV+++G G +G+              +  
Sbjct: 3   YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMD 35


>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea
           batatas) [TaxId: 4120]}
          Length = 341

 Score = 25.2 bits (54), Expect = 6.9
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 18  EALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLH-YN 76
           +A++ ++ L    P NF   A + C          +   F      +H +      H + 
Sbjct: 65  KAVELMKALPADDPRNFYQQALVHCAYCNG---GYDQVNFPDQEIQVHNSWLFFPFHRWY 121

Query: 77  LLQ 79
           L  
Sbjct: 122 LYF 124


>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM
          {Yersinia pestis [TaxId: 632]}
          Length = 353

 Score = 25.2 bits (53), Expect = 7.2
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 10/42 (23%)

Query: 62 KCLHFANEEITLHYNLLQSLPS----------SHNSVPNIPS 93
           CL     E+ L+   L SLP           S NS+  +P 
Sbjct: 34 DCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPE 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 843,697
Number of extensions: 38587
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 13
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)