BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8106
         (196 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EZN|A Chain A, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei 1710b
 pdb|3EZN|B Chain B, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei 1710b
 pdb|3FDZ|A Chain A, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei 1710b With Bound
           2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
 pdb|3GP3|A Chain A, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei With 2-Phosphoserine
 pdb|3GP3|B Chain B, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei With 2-Phosphoserine
 pdb|3GP3|C Chain C, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei With 2-Phosphoserine
 pdb|3GP3|D Chain D, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei With 2-Phosphoserine
 pdb|3GP5|A Chain A, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
           And Vanadate
 pdb|3GP5|B Chain B, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
           And Vanadate
 pdb|3GW8|A Chain A, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei With Vanadate And Glycerol
 pdb|3GW8|B Chain B, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei With Vanadate And Glycerol
          Length = 257

 Score = 27.3 bits (59), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 26  KVNYTTNCETLRLGQYICPDPDPKYEYIDRKTQQPKNCTKENLARV 71
           + +Y T    L  G    P  DP+Y  + R+      C K+ +ARV
Sbjct: 122 RRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDTVARV 167


>pdb|3FDZ|B Chain B, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei 1710b With Bound
           2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
          Length = 257

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 26  KVNYTTNCETLRLGQYICPDPDPKYEYIDRKTQQPKNCTKENLARV 71
           + +Y T    L  G    P  DP+Y  + R+      C K+ +ARV
Sbjct: 122 RRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDTVARV 167


>pdb|3LNT|A Chain A, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei 1710b With Bound Malonic Acid
 pdb|3LNT|B Chain B, Crystal Structure Of Phosphoglyceromutase From
           Burkholderia Pseudomallei 1710b With Bound Malonic Acid
          Length = 250

 Score = 27.3 bits (59), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 26  KVNYTTNCETLRLGQYICPDPDPKYEYIDRKTQQPKNCTKENLARV 71
           + +Y T    L  G    P  DP+Y  + R+      C K+ +ARV
Sbjct: 115 RRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDTVARV 160


>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
           Borrelia Burgdorferi B31
 pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
           Borrelia Burgdorferi B31
 pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
           Borrelia Burgdorferi B31
 pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
           Borrelia Burgdorferi B31
          Length = 274

 Score = 26.6 bits (57), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 10/54 (18%)

Query: 44  PDPDPKYEYIDRKTQQPKNCTKENLARV----------RCIAADNIICLETGNS 87
           P  DP+Y++I ++      C K+ +ARV            +    +I    GNS
Sbjct: 158 PIKDPRYKHIPKRELPSTECLKDTVARVIPYWTDEIAKEVLEGKKVIVAAHGNS 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.142    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,335,936
Number of Sequences: 62578
Number of extensions: 255317
Number of successful extensions: 454
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 6
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)