Query psy8106
Match_columns 196
No_of_seqs 196 out of 880
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:36:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4272|consensus 100.0 9E-46 2E-50 304.4 8.2 139 26-168 16-164 (164)
2 PHA01886 TM2 domain-containing 99.8 7.7E-20 1.7E-24 135.9 4.8 55 101-155 2-56 (78)
3 PF05154 TM2: TM2 domain; Int 99.6 9.4E-16 2E-20 104.5 4.7 49 100-148 2-51 (51)
4 COG2314 XynA Predicted membran 98.4 3.9E-07 8.5E-12 68.8 4.0 34 101-134 8-41 (95)
5 PF11712 Vma12: Endoplasmic re 31.6 63 0.0014 25.8 3.5 55 99-154 81-135 (142)
6 PF14990 DUF4516: Domain of un 20.3 34 0.00073 23.6 -0.0 22 102-123 12-33 (47)
7 PF12955 DUF3844: Domain of un 18.8 87 0.0019 24.7 2.0 19 2-20 65-83 (103)
8 PF07850 Renin_r: Renin recept 17.7 42 0.00092 26.2 0.0 20 4-23 54-73 (98)
9 KOG0453|consensus 13.0 1.1E+02 0.0023 31.5 1.4 33 145-177 241-273 (778)
10 PF11241 DUF3043: Protein of u 12.7 2.5E+02 0.0055 23.9 3.4 62 87-154 64-126 (170)
No 1
>KOG4272|consensus
Probab=100.00 E-value=9e-46 Score=304.36 Aligned_cols=139 Identities=53% Similarity=0.885 Sum_probs=126.1
Q ss_pred CcceeeecCCCCCCcccCCCCCCCCccCCcCCCCc-cC-CCCCC--------ceeEEeeecCceeeccCCCceeeecccc
Q psy8106 26 KVNYTTNCETLRLGQYICPDPDPKYEYIDRKTQQP-KN-CTKEN--------LARVRCIAADNIICLETGNSTFYKDMRC 95 (196)
Q Consensus 26 ~~~~~v~C~~L~~~~~~C~~~~p~~~~id~~t~~~-~~-C~~~~--------~~~v~C~~~~~I~C~~~gnr~F~k~~pc 95 (196)
....+++|++|++.||.|++|++.. .+|.+|||+ .+ |.+.+ .+.++|++.+++||. +||+|.|++||
T Consensus 16 ~~~~~v~C~~l~~~~~~C~dp~~~~-~~~~~tQq~~~~~C~~~~~~~~~c~~at~ikC~~~~~v~c~--~~rtF~k~~pC 92 (164)
T KOG4272|consen 16 PCTPNVKCRYLKPVQFLCKDPVSCV-GPDTKTQQPTCGFCWQLGGADYECEPATNIKCTVLDGVECH--GNRTFPKEIPC 92 (164)
T ss_pred CCCccEEeecCCceEEEcCCCcccC-CccccccccccchhhhcCCceeEeecCCcceeEecCCceee--cccccccccce
Confidence 5566799999999999999976633 378889997 55 88865 456788888888886 79999999999
Q ss_pred cccCCchHHHHHHHHHHhccccceEEEcCCCchhHHHHHHhhhhhHHHHHHHHHHHhhcccCCCCCcccccCC
Q psy8106 96 RWTNGYSFETAMLLSIFLGMFGADRFYLGYPALGLLKFCTLGFMLIGYLVDIILIATQIVGPADGSYYIIPYY 168 (196)
Q Consensus 96 ~~~~~ks~~~A~lLslflG~fG~HRFYLG~~~~Gil~L~T~Gg~gIw~iiD~ilI~~~~~~paDGs~y~~~~~ 168 (196)
+|++|+++.+|++||+|||+||+||||||++++|++||+|+|++||||+||+|+|++++++|||||.|++ ||
T Consensus 93 ~~~~Gy~~~ttlllSifLG~fG~DRFyLGy~~~glgKl~tlGGlgIw~lVDiiLI~lg~vgPaDGS~yi~-yY 164 (164)
T KOG4272|consen 93 NWTNGYSWTTTLLLSIFLGGFGADRFYLGYWALGLGKLFTLGGLGIWWLVDIILISLGYVGPADGSSYII-YY 164 (164)
T ss_pred eeecCeEehHHHHHHHHhhhccccEEEeCchHHhHhhhhccccchhHHHHHHHHHHhcccccCCCceEEE-eC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 76
No 2
>PHA01886 TM2 domain-containing protein
Probab=99.79 E-value=7.7e-20 Score=135.91 Aligned_cols=55 Identities=38% Similarity=0.631 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhccccceEEEcCCCchhHHHHHHhhhhhHHHHHHHHHHHhhcc
Q psy8106 101 YSFETAMLLSIFLGMFGADRFYLGYPALGLLKFCTLGFMLIGYLVDIILIATQIV 155 (196)
Q Consensus 101 ks~~~A~lLslflG~fG~HRFYLG~~~~Gil~L~T~Gg~gIw~iiD~ilI~~~~~ 155 (196)
||+.+|++||+|+|++|+||||+|++++|++|++|+|+++|||++|+|+|+.++-
T Consensus 2 Ks~~~AylL~~flG~~G~HRFYlG~~~~Gi~~l~t~G~~gig~liD~flIp~~v~ 56 (78)
T PHA01886 2 KSTAIAYVLWFFLGFFGIHRFYTGNIATGIIWLFTGGLFGIGWFIDLFLTAGLVQ 56 (78)
T ss_pred CcHHHHHHHHHHHhhcccchhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999998764
No 3
>PF05154 TM2: TM2 domain; InterPro: IPR007829 This domain is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.
Probab=99.60 E-value=9.4e-16 Score=104.50 Aligned_cols=49 Identities=47% Similarity=0.694 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHhccccceEEEcCCCchhHHHHHHh-hhhhHHHHHHHH
Q psy8106 100 GYSFETAMLLSIFLGMFGADRFYLGYPALGLLKFCTL-GFMLIGYLVDII 148 (196)
Q Consensus 100 ~ks~~~A~lLslflG~fG~HRFYLG~~~~Gil~L~T~-Gg~gIw~iiD~i 148 (196)
+||+.+|++||+|+|++|+||||+|++..|++++++. |++++|++||+|
T Consensus 2 ~K~~~~a~lL~~~lG~~G~hrfYlg~~~~g~~~l~~~~g~~~i~~lid~i 51 (51)
T PF05154_consen 2 QKSKWIAYLLSFFLGWFGLHRFYLGKYGKGILYLLTFIGILGIWWLIDLI 51 (51)
T ss_pred CcCHHHHHHHHHHHhhccccceecCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999988 999999999985
No 4
>COG2314 XynA Predicted membrane protein [Function unknown]
Probab=98.37 E-value=3.9e-07 Score=68.77 Aligned_cols=34 Identities=35% Similarity=0.612 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHhccccceEEEcCCCchhHHHHH
Q psy8106 101 YSFETAMLLSIFLGMFGADRFYLGYPALGLLKFC 134 (196)
Q Consensus 101 ks~~~A~lLslflG~fG~HRFYLG~~~~Gil~L~ 134 (196)
+++.+|.++++++|++|+||||+|+.++|++++.
T Consensus 8 ~~k~~~~~~~~~~g~~G~hkfYlg~~~~gi~~~~ 41 (95)
T COG2314 8 KNKLIAGLLAALFGIFGLHKFYLGQGGKGILTLL 41 (95)
T ss_pred hhHHHHHHHHHHhcccchHHHHcCCchhhhHHHH
Confidence 5677788999999999999999999999999765
No 5
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=31.58 E-value=63 Score=25.79 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=32.2
Q ss_pred CCchHHHHHHHHHHhccccceEEEcCCCchhHHHHHHhhhhhHHHHHHHHHHHhhc
Q psy8106 99 NGYSFETAMLLSIFLGMFGADRFYLGYPALGLLKFCTLGFMLIGYLVDIILIATQI 154 (196)
Q Consensus 99 ~~ks~~~A~lLslflG~fG~HRFYLG~~~~Gil~L~T~Gg~gIw~iiD~ilI~~~~ 154 (196)
.+-+..++.+..+++||+++...+ |.+..+.=-++.+.+..+..++|+++.....
T Consensus 81 ~v~Nilvsv~~~~~~~~~~~~~~~-~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~ 135 (142)
T PF11712_consen 81 TVFNILVSVFAVFFAGWYWAGYSF-GGWSFPYRVLLGLFGALLVLVAEVVLYIRYL 135 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666667777886666554 2333333334444444556688999887644
No 6
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=20.25 E-value=34 Score=23.59 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhccccceEEEc
Q psy8106 102 SFETAMLLSIFLGMFGADRFYL 123 (196)
Q Consensus 102 s~~~A~lLslflG~fG~HRFYL 123 (196)
...++.++|.+.|.--+||+|-
T Consensus 12 ~~~~~s~~sM~aGA~vVH~~yk 33 (47)
T PF14990_consen 12 KSLVASLLSMLAGASVVHNIYK 33 (47)
T ss_pred HHHHHHHHHHHhhhHHHHHHhC
Confidence 3567788899999999999984
No 7
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=18.76 E-value=87 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.252 Sum_probs=15.5
Q ss_pred CceehhhHHHHHHHHHhhc
Q psy8106 2 GLEFNLLIYTPILLLCLWV 20 (196)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (196)
..+|+|++|+-|+++.++.
T Consensus 65 S~~F~L~~~~ti~lv~~~~ 83 (103)
T PF12955_consen 65 SVPFWLFAGFTIALVVLVA 83 (103)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 4689999998888777766
No 8
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=17.68 E-value=42 Score=26.25 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=0.0
Q ss_pred eehhhHHHHHHHHHhhccCC
Q psy8106 4 EFNLLIYTPILLLCLWVQPS 23 (196)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (196)
.||..+|+.++++..|...|
T Consensus 54 iFnIiLW~~v~l~~all~i~ 73 (98)
T PF07850_consen 54 IFNIILWFSVVLALALLAIC 73 (98)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 59999998888877777455
No 9
>KOG0453|consensus
Probab=12.99 E-value=1.1e+02 Score=31.54 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=30.0
Q ss_pred HHHHHHHhhcccCCCCCcccccCCCCceeEEee
Q psy8106 145 VDIILIATQIVGPADGSYYIIPYYGAGITIVRS 177 (196)
Q Consensus 145 iD~ilI~~~~~~paDGs~y~~~~~g~~~~~~~~ 177 (196)
-|+|+-..+++.-..|..+++.|+||++..+.-
T Consensus 241 KDvIlklagiltvkggtg~iiEy~G~Gv~slSc 273 (778)
T KOG0453|consen 241 KDVILKLAGILTVKGGTGHIIEYFGPGVNSLSC 273 (778)
T ss_pred hHHHHhhhceeeecCccceeEEEecCccceecc
Confidence 599999999999999999999999999987764
No 10
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=12.70 E-value=2.5e+02 Score=23.90 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=32.3
Q ss_pred ceeeecc-cccccCCchHHHHHHHHHHhccccceEEEcCCCchhHHHHHHhhhhhHHHHHHHHHHHhhc
Q psy8106 87 STFYKDM-RCRWTNGYSFETAMLLSIFLGMFGADRFYLGYPALGLLKFCTLGFMLIGYLVDIILIATQI 154 (196)
Q Consensus 87 r~F~k~~-pc~~~~~ks~~~A~lLslflG~fG~HRFYLG~~~~Gil~L~T~Gg~gIw~iiD~ilI~~~~ 154 (196)
|.|-+++ .-+++ --.+.+.++|-++++.|- ...+...++-.+.+-++.+..+||.+.+...+
T Consensus 64 Rr~vRD~VDsR~~-i~e~fmP~alv~lv~~~v-----~~~~~~~~~~~~~~~~~~~~~iid~~~l~r~v 126 (170)
T PF11241_consen 64 RRYVRDYVDSRRN-IGEFFMPVALVLLVLSFV-----VPSPQVQLYVTLAMYVLLLLVIIDGVILGRRV 126 (170)
T ss_pred hhhhhhhhhcccc-hHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666653 33333 234555555555555444 11122222222223345688899999987765
Done!