Query psy8106
Match_columns 196
No_of_seqs 196 out of 880
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:37:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wkt_A Yeast killer toxin; wil 11.6 2.2E+02 0.0074 20.5 3.4 11 67-77 60-70 (88)
2 3c75_L Methylamine dehydrogena 9.1 84 0.0029 26.2 0.5 14 155-168 119-132 (188)
3 3h0g_L DNA-directed RNA polyme 8.4 2.8E+02 0.0095 19.0 2.9 10 85-94 45-54 (63)
4 2oiz_D Aromatic amine dehydrog 8.4 86 0.0029 24.8 0.3 14 155-168 67-80 (135)
5 3sjl_C Methylamine dehydrogena 7.8 80 0.0028 25.0 -0.1 14 155-168 62-75 (137)
6 1c96_A Mitochondrial aconitase 7.4 89 0.003 30.8 -0.1 34 144-177 216-249 (753)
7 1a8d_A Tetanus neurotoxin; clo 7.3 1E+02 0.0034 28.9 0.2 13 113-125 402-414 (452)
8 1weq_A PHD finger protein 7; s 5.9 3.9E+02 0.013 19.2 2.8 26 22-48 51-78 (85)
9 2vxr_A Botulinum neurotoxin ty 5.5 1.2E+02 0.004 28.5 -0.3 14 112-125 422-435 (482)
10 4f4o_C Haptoglobin; globin fol 5.2 1.5E+02 0.0052 25.3 0.2 34 12-45 8-54 (347)
No 1
>1wkt_A Yeast killer toxin; williopsis mrakii; NMR {Williopsis saturnus var} SCOP: b.11.1.2
Probab=11.62 E-value=2.2e+02 Score=20.54 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=7.1
Q ss_pred CceeEEeeecC
Q psy8106 67 NLARVRCIAAD 77 (196)
Q Consensus 67 ~~~~v~C~~~~ 77 (196)
++....|.+.+
T Consensus 60 grsttmccp~~ 70 (88)
T 1wkt_A 60 GRSTTMCCPAN 70 (88)
T ss_dssp SCEEEEEECSS
T ss_pred cccceeecCCC
Confidence 45666777664
No 2
>3c75_L Methylamine dehydrogenase light chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=9.08 E-value=84 Score=26.17 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=11.0
Q ss_pred ccCCCCCcccccCC
Q psy8106 155 VGPADGSYYIIPYY 168 (196)
Q Consensus 155 ~~paDGs~y~~~~~ 168 (196)
..|+||+.|+|.|+
T Consensus 119 ~NP~Dgk~YlIsYn 132 (188)
T 3c75_L 119 YNPTDGQSYLIAYR 132 (188)
T ss_dssp ECTTTSCEEEEEEC
T ss_pred cCCCCCceEEEEec
Confidence 47888888888776
No 3
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=8.37 E-value=2.8e+02 Score=18.98 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=6.5
Q ss_pred CCceeeeccc
Q psy8106 85 GNSTFYKDMR 94 (196)
Q Consensus 85 gnr~F~k~~p 94 (196)
|.|.+.|.-+
T Consensus 45 G~RILyK~Rt 54 (63)
T 3h0g_L 45 GHRVMYKMRT 54 (63)
T ss_dssp CCCCCBCCCC
T ss_pred CcEEEEEecC
Confidence 6777777543
No 4
>2oiz_D Aromatic amine dehydrogenase, small subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_D* 2agx_D* 2agl_D* 2agz_D* 2ah0_D* 2ah1_D* 2h3x_B* 2h47_B* 2hj4_D* 2hjb_D* 2hkm_D* 2hxc_D* 2iaa_B* 2iup_D* 2iuq_D* 2iur_D* 2iuv_D* 2agy_D* 2ok4_D* 2ok6_D* ...
Probab=8.36 E-value=86 Score=24.79 Aligned_cols=14 Identities=43% Similarity=0.819 Sum_probs=11.2
Q ss_pred ccCCCCCcccccCC
Q psy8106 155 VGPADGSYYIIPYY 168 (196)
Q Consensus 155 ~~paDGs~y~~~~~ 168 (196)
..|+||+.|+|.|+
T Consensus 67 ~NP~Dgk~YlIsYn 80 (135)
T 2oiz_D 67 HNPHDGKDYLISYH 80 (135)
T ss_dssp ECTTTCCEEEEEEE
T ss_pred cCCCCCceEEEEec
Confidence 46888888888775
No 5
>3sjl_C Methylamine dehydrogenase light chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3l4o_C* 3l4m_C* 3pxs_C* 3pxt_C* 3pxw_C* 3rlm_C* 3orv_C* 3rn0_C* 3rn1_C* 3rmz_C* 3sle_C* 3svw_C* 3sws_C* 3sxt_C* 2gc4_B* 1mg3_B* 1mg2_B* 2gc7_B* 2j55_L* 2j56_L* ...
Probab=7.78 E-value=80 Score=25.00 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=11.0
Q ss_pred ccCCCCCcccccCC
Q psy8106 155 VGPADGSYYIIPYY 168 (196)
Q Consensus 155 ~~paDGs~y~~~~~ 168 (196)
..|+||+.|+|.|+
T Consensus 62 ~NP~DGk~YlIsYn 75 (137)
T 3sjl_C 62 YNPTDGQSYLIAYR 75 (137)
T ss_dssp EETTTTEEEEEEEE
T ss_pred cCCCCCceEEEEec
Confidence 46888888888775
No 6
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=7.42 E-value=89 Score=30.78 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcccCCCCCcccccCCCCceeEEee
Q psy8106 144 LVDIILIATQIVGPADGSYYIIPYYGAGITIVRS 177 (196)
Q Consensus 144 iiD~ilI~~~~~~paDGs~y~~~~~g~~~~~~~~ 177 (196)
--|+||-..+.++...+..+++.|+||.+..+..
T Consensus 216 akDviL~ii~~l~~~G~~g~~vEf~G~gv~~LS~ 249 (753)
T 1c96_A 216 PKDVILKVAGILTVKGGTGAIVEYHGPGVDSISC 249 (753)
T ss_dssp HHHHHHHHHHHHTTTTTTTEEEEEESGGGGGSCH
T ss_pred HHHHHHHHHHHhccCCcceEEEEEECCccccCCc
Confidence 4699999999999999999999999998876553
No 7
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*
Probab=7.28 E-value=1e+02 Score=28.85 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=11.4
Q ss_pred hccccceEEEcCC
Q psy8106 113 LGMFGADRFYLGY 125 (196)
Q Consensus 113 lG~fG~HRFYLG~ 125 (196)
+|.+|.|||+.+.
T Consensus 402 ~gl~g~h~~~~~~ 414 (452)
T 1a8d_A 402 LGLVGTHNGQIGN 414 (452)
T ss_dssp EEEEEEEEECSTT
T ss_pred eeeEeeecccccc
Confidence 6999999999765
No 8
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=5.93 E-value=3.9e+02 Score=19.21 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=21.2
Q ss_pred CCCCCcceeeecCCCC--CCcccCCCCCC
Q psy8106 22 PSDNKVNYTTNCETLR--LGQYICPDPDP 48 (196)
Q Consensus 22 ~~~~~~~~~v~C~~L~--~~~~~C~~~~p 48 (196)
+| .++..+..|+.|. ...|.|..|.+
T Consensus 51 ~C-gs~gtH~~Cs~l~~~~~~weC~~C~~ 78 (85)
T 1weq_A 51 TC-GSHGTHRDCSSLRPNSKKWECNECLP 78 (85)
T ss_dssp SS-CCCEECSGGGTCCTTCSCCCCTTTSC
T ss_pred cc-CCchhHHHHhCCcCCCCCEECCcCcc
Confidence 55 5666789999994 78899999887
No 9
>2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease, recepto secreted, binding domain, metalloprotease; 1.90A {Clostridium botulinum} PDB: 3mpp_G
Probab=5.50 E-value=1.2e+02 Score=28.54 Aligned_cols=14 Identities=36% Similarity=0.868 Sum_probs=11.7
Q ss_pred HhccccceEEEcCC
Q psy8106 112 FLGMFGADRFYLGY 125 (196)
Q Consensus 112 flG~fG~HRFYLG~ 125 (196)
=+|.+|+|||+.+.
T Consensus 422 ~iGLiG~h~~~~~~ 435 (482)
T 2vxr_A 422 TFGLFGIGKFVKDY 435 (482)
T ss_dssp EEEEEEEEESCCCC
T ss_pred ceeeeeeeeccccc
Confidence 37999999999764
No 10
>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}
Probab=5.19 E-value=1.5e+02 Score=25.30 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=7.7
Q ss_pred HHHHHHhhccCCC----CCcceeeecCCCCCC---------cccCCC
Q psy8106 12 PILLLCLWVQPSD----NKVNYTTNCETLRLG---------QYICPD 45 (196)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~v~C~~L~~~---------~~~C~~ 45 (196)
+.+|+|...+.|. .++....+|...+.- ||.|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~g~~~~~i~y~C~~ 54 (347)
T 4f4o_C 8 VALLLCGQLFAAETGNEATDATDDSCPKPPEIPKGYVEHMVRYHCQT 54 (347)
T ss_dssp -------------------------CCCCCCBTTEEEEEEEEEEECT
T ss_pred HHHHHHHHHhccccCccccccCCCcCCCCCCCCCceeceeeEEcCCC
Confidence 3444444444443 222233466665532 577865
Done!