Query psy8106
Match_columns 196
No_of_seqs 196 out of 880
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 18:37:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8106.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8106hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1weqa_ g.50.1.2 (A:) PHD fing 34.3 14 0.00098 25.3 2.9 32 22-57 51-84 (85)
2 d2e74f1 f.23.25.1 (F:1-32) Pet 21.5 40 0.0029 19.0 2.8 20 133-152 10-29 (32)
3 d1wkta_ b.11.1.2 (A:) Yeast ki 11.4 1E+02 0.0076 20.5 3.4 11 67-77 60-70 (88)
4 d1ak2a2 g.41.2.1 (A:147-176) M 9.2 55 0.004 18.1 1.1 17 157-173 1-17 (30)
5 d1d0gr3 g.24.1.1 (R:102-128) D 9.1 78 0.0057 17.1 1.6 22 61-82 4-25 (27)
6 d3btaa2 b.42.4.2 (A:1079-1295) 8.8 25 0.0018 27.9 -0.8 20 113-132 168-187 (217)
7 d2bbkl_ g.21.1.1 (L:) Methylam 8.4 34 0.0025 24.9 -0.1 14 155-168 56-69 (125)
8 d1epwa2 b.42.4.2 (A:1080-1290) 7.5 48 0.0035 26.1 0.4 14 112-125 154-167 (211)
9 d2i5nh2 f.23.10.1 (H:1-36) Pho 6.2 1.1E+02 0.0078 17.4 1.4 9 7-15 22-30 (36)
10 d1twfl_ g.41.9.2 (L:) RBP12 su 6.2 1.3E+02 0.0098 18.1 1.9 8 41-48 5-12 (46)
No 1
>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.33 E-value=14 Score=25.34 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=24.8
Q ss_pred CCCCCcceeeecCCCC--CCcccCCCCCCCCccCCcCC
Q psy8106 22 PSDNKVNYTTNCETLR--LGQYICPDPDPKYEYIDRKT 57 (196)
Q Consensus 22 ~~~~~~~~~v~C~~L~--~~~~~C~~~~p~~~~id~~t 57 (196)
+| ..+..+..|+.|. ...|.|.+|.+ ..+++|
T Consensus 51 ~C-GS~gtH~~C~~l~~~~~~y~C~~C~~---v~~~~~ 84 (85)
T d1weqa_ 51 TC-GSHGTHRDCSSLRPNSKKWECNECLP---ASGPSS 84 (85)
T ss_dssp SS-CCCEECSGGGTCCTTCSCCCCTTTSC---CSSCSC
T ss_pred cc-CCccchhhhcCCcCCCCCEECCcCcc---hhCcCC
Confidence 55 6666789999884 57799999988 666665
No 2
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.47 E-value=40 Score=18.99 Aligned_cols=20 Identities=15% Similarity=0.668 Sum_probs=15.2
Q ss_pred HHHhhhhhHHHHHHHHHHHh
Q psy8106 133 FCTLGFMLIGYLVDIILIAT 152 (196)
Q Consensus 133 L~T~Gg~gIw~iiD~ilI~~ 152 (196)
++++|..+++|-+...++-.
T Consensus 10 ~lsfglifvgwglgalllki 29 (32)
T d2e74f1 10 LLSFGLIFVGWGLGVLLLKI 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHhhh
Confidence 46888888888888777644
No 3
>d1wkta_ b.11.1.2 (A:) Yeast killer toxin {Williopsis mrakii [TaxId: 4963]}
Probab=11.35 E-value=1e+02 Score=20.46 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=7.1
Q ss_pred CceeEEeeecC
Q psy8106 67 NLARVRCIAAD 77 (196)
Q Consensus 67 ~~~~v~C~~~~ 77 (196)
++....|.+.+
T Consensus 60 grsttmccp~~ 70 (88)
T d1wkta_ 60 GRSTTMCCPAN 70 (88)
T ss_dssp SCEEEEEECSS
T ss_pred cccceeecCCC
Confidence 46666777664
No 4
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=9.21 E-value=55 Score=18.10 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.3
Q ss_pred CCCCCcccccCCCCcee
Q psy8106 157 PADGSYYIIPYYGAGIT 173 (196)
Q Consensus 157 paDGs~y~~~~~g~~~~ 173 (196)
|+-|..|.+.|.-||.+
T Consensus 1 P~sG~~Yhv~f~PPk~~ 17 (30)
T d1ak2a2 1 PQSGRSYHEEFNPPKEP 17 (30)
T ss_dssp TTTCCEEBTTTBCCSST
T ss_pred CCCCCCccccccCCCCC
Confidence 67899999999988764
No 5
>d1d0gr3 g.24.1.1 (R:102-128) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.09 E-value=78 Score=17.10 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=15.8
Q ss_pred cCCCCCCceeEEeeecCceeec
Q psy8106 61 KNCTKENLARVRCIAADNIICL 82 (196)
Q Consensus 61 ~~C~~~~~~~v~C~~~~~I~C~ 82 (196)
.||+.-..---.|++-.+|+|.
T Consensus 4 tgcprg~vkv~dctpwsdi~cv 25 (27)
T d1d0gr3 4 TGCPRGMVKVGDCTPWSDIECV 25 (27)
T ss_dssp SSCCTTCEEEECCBTTBCCEEE
T ss_pred cCCCCcceEeccCcccccceee
Confidence 5787544444579999999994
No 6
>d3btaa2 b.42.4.2 (A:1079-1295) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
Probab=8.77 E-value=25 Score=27.93 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=15.3
Q ss_pred hccccceEEEcCCCchhHHH
Q psy8106 113 LGMFGADRFYLGYPALGLLK 132 (196)
Q Consensus 113 lG~fG~HRFYLG~~~~Gil~ 132 (196)
+|.+|+|||+.+....+.-|
T Consensus 168 igLiG~h~f~n~~~~vas~w 187 (217)
T d3btaa2 168 IGFIGFHQFNNIAKLVASNW 187 (217)
T ss_dssp CEEEEEECSSSCCEEEEEHH
T ss_pred EEEEEEEEeccCCCEEEEeh
Confidence 89999999999886444333
No 7
>d2bbkl_ g.21.1.1 (L:) Methylamine dehydrogenase {Paracoccus denitrificans [TaxId: 266]}
Probab=8.41 E-value=34 Score=24.94 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=10.7
Q ss_pred ccCCCCCcccccCC
Q psy8106 155 VGPADGSYYIIPYY 168 (196)
Q Consensus 155 ~~paDGs~y~~~~~ 168 (196)
..|+||+.|+|.|+
T Consensus 56 ~NP~Dgk~YlIsYn 69 (125)
T d2bbkl_ 56 YNPTDGQSYLIAYR 69 (125)
T ss_dssp EETTTTEEEEEEEE
T ss_pred cCCCCCCeeEEEec
Confidence 36888888888775
No 8
>d1epwa2 b.42.4.2 (A:1080-1290) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}
Probab=7.48 E-value=48 Score=26.05 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=11.2
Q ss_pred HhccccceEEEcCC
Q psy8106 112 FLGMFGADRFYLGY 125 (196)
Q Consensus 112 flG~fG~HRFYLG~ 125 (196)
-+|.+|+|+|+-..
T Consensus 154 ~iGlig~h~~~~~~ 167 (211)
T d1epwa2 154 EIGLIGIHRFYESG 167 (211)
T ss_dssp EEEEEEEEEEEEEC
T ss_pred eEEEEEeeeecccc
Confidence 37999999997653
No 9
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=6.22 E-value=1.1e+02 Score=17.38 Aligned_cols=9 Identities=56% Similarity=0.951 Sum_probs=5.4
Q ss_pred hhHHHHHHH
Q psy8106 7 LLIYTPILL 15 (196)
Q Consensus 7 ~~~~~~~~~ 15 (196)
+.+|+++++
T Consensus 22 lviwtvvll 30 (36)
T d2i5nh2 22 LVIWTVVLL 30 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456766654
No 10
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.17 E-value=1.3e+02 Score=18.06 Aligned_cols=8 Identities=38% Similarity=1.003 Sum_probs=5.4
Q ss_pred ccCCCCCC
Q psy8106 41 YICPDPDP 48 (196)
Q Consensus 41 ~~C~~~~p 48 (196)
|+|-+|..
T Consensus 5 YiCgeCg~ 12 (46)
T d1twfl_ 5 YICAECSS 12 (46)
T ss_dssp EECSSSCC
T ss_pred EEcccCCC
Confidence 67777655
Done!