RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8106
(196 letters)
>gnl|CDD|218469 pfam05154, TM2, TM2 domain. This family is composed of a pair of
transmembrane alpha helices connected by a short linker.
The function of this domain is unknown, however it
occurs in a wide range or protein contexts.
Length = 51
Score = 62.6 bits (153), Expect = 9e-14
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 99 NGYSFETAMLLSIFLGMFGADRFYLGYPALGLLKFCT-LGFMLIGYLVDII 148
S A+LLS+FLG FG RFYLG G+L T G + I +L+D+I
Sbjct: 1 KKKSKLIALLLSLFLGGFGVHRFYLGKTGTGILYLLTFWGILGIWWLIDLI 51
>gnl|CDD|222840 PHA01886, PHA01886, TM2 domain-containing protein.
Length = 78
Score = 50.7 bits (121), Expect = 5e-09
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 105 TAMLLSIFLGMFGADRFYLGYPALGLLKFCTLGFMLIGYLVDIILIATQI 154
A +L FLG FG RFY G A G++ T G IG+ +D+ L A +
Sbjct: 6 IAYVLWFFLGFFGIHRFYTGNIATGIIWLFTGGLFGIGWFIDLFLTAGLV 55
>gnl|CDD|225196 COG2314, XynA, Predicted membrane protein [Function unknown].
Length = 95
Score = 38.5 bits (90), Expect = 2e-04
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 106 AMLLSIFLGMFGADRFYLGYPALGLLKFCTLGFMLIGYLVDIILIATQIVGPADGSYYII 165
A LL+ G+FG +FYLG G+ TL G + ++LI + +YI
Sbjct: 13 AGLLAALFGIFGLHKFYLGQGGKGI---LTLLLNWTGIFLILLLI-GYLGVLLGDEFYID 68
Query: 166 PYYGAGITIVRSDNETYRVPQDD 188
+ + + P
Sbjct: 69 GIGDGLLGALSQVAYSLGPPLRV 91
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 32.5 bits (74), Expect = 0.14
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 10 YTPILLLCLWVQPSDNKVNYTTNCETLRLGQYICPDPDPKYEYIDRKTQQPKNCTKENLA 69
+ P+ L+ L VQ D +N + GQ ++ Y RK + T ++
Sbjct: 852 FLPLHLVGLRVQWDDRWINDLED----SYGQ--------EWTYEQRKYVEFTCHTAFFVS 899
Query: 70 RVRCIAADNIICLETGNSTFYKDMRCRWTN-GYSFETAM--LLSIFLGMFGADRFYLGYP 126
V AD IIC NS F + M+ + G ETA+ LS GM A R YP
Sbjct: 900 IVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRM---YP 956
Query: 127 ALGLLKFCTLGFMLIGYLVDII 148
FC + L+ ++ D I
Sbjct: 957 LKPTWWFCAFPYSLLIFVYDEI 978
>gnl|CDD|133462 cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of
undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-
pentapeptide from UDP-MurNAc-pentapeptide and
undecaprenyl-phosphate. It is an integral membrane
protein with possibly ten transmembrane domains.
Length = 280
Score = 31.3 bits (72), Expect = 0.22
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 107 MLLSIFLGMFGADRFYLGYPALGLLKFCTLGFMLIGYLVDII 148
+L+I + L P + LL TLGF LIG+L D +
Sbjct: 19 FILAILISTLLWAD--LDSPEVLLLLLLTLGFGLIGFLDDYL 58
>gnl|CDD|225239 COG2364, COG2364, Predicted membrane protein [Function unknown].
Length = 210
Score = 30.3 bits (69), Expect = 0.50
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 105 TAMLLSIFLGMFGADRFYLGYPA--LGLLKFCTLGFMLIGYLVDIILIATQIVGPADG 160
A+L+ +F+ +F F L P L F +G +LIG I + A GP DG
Sbjct: 82 NALLIGVFIDLF---LFLLPTPTALFSKLIFFLIGLVLIGLGTAIYVTANLGAGPRDG 136
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase).
Length = 464
Score = 29.3 bits (66), Expect = 1.5
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 135 TLGFMLIGYL------VDIILIATQIVGPADGSYYIIPYYGAGI 172
+G L G L D+IL + G+ I+ ++G GI
Sbjct: 166 VMGIKLTGKLNGGITAKDVILKVIGKLTVKGGTGKIVEFFGEGI 209
>gnl|CDD|234638 PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional.
Length = 344
Score = 28.2 bits (64), Expect = 2.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 108 LLSIFLGMFGADRFYLGYPALGLLKFCTLGFMLIGYLVDIILI 150
LL+I + Y L L TLGF LIG+L D + +
Sbjct: 65 LLAIVISTLLWADLSNPYVWLVL--LVTLGFGLIGFLDDYLKV 105
>gnl|CDD|238773 cd01515, Arch_FBPase_1, Archaeal fructose-1,6-bisphosphatase and
related enzymes of inositol monophosphatase family
(FBPase class IV). These are Mg++ dependent
phosphatases. Members in this family may have both
fructose-1,6-bisphosphatase and inositol-monophosphatase
activity. In hyperthermophilic archaea, inositol
monophosphatase is thought to play a role in the
biosynthesis of di-myo-inositol-1,1'-phosphate, an
osmolyte unique to hyperthermophiles.
Length = 257
Score = 27.7 bits (62), Expect = 3.5
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 136 LGFMLIGYLVDIILIATQIVGPADGSYYI---IPYYGAGITIVRSD 178
+G + G + ++ + P DG+Y IP+Y + + + D
Sbjct: 66 IGVIDNGDEPEYTVV----LDPLDGTYNAINGIPFYSVSVAVFKID 107
>gnl|CDD|223814 COG0743, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase
[Lipid metabolism].
Length = 385
Score = 27.6 bits (62), Expect = 5.0
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 107 MLLSIFLGMFGADRFYLGYPALGLLKFCTLGF 138
M I + +R L K L F
Sbjct: 262 MRTPISYALAYPERVPSAVEPLDFTKLSALTF 293
>gnl|CDD|214670 smart00452, STI, Soybean trypsin inhibitor (Kunitz) family of
protease inhibitors.
Length = 172
Score = 26.5 bits (59), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 158 ADGSYYIIPYY---GAGITIVRSDNET 181
G+YYI+P G G+T+ + NE
Sbjct: 11 NGGTYYILPAIRGHGGGLTLAATGNEI 37
>gnl|CDD|223548 COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane].
Length = 319
Score = 26.8 bits (60), Expect = 8.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 106 AMLLSIFLGMFGADRFYLGYPALGLLKFCTLGFMLIGYLVDII 148
A+LLSI L A +L LGF LIG+L D +
Sbjct: 54 AILLSILLASLLAANLLTNPYVWLVL-LGLLGFGLIGFLDDRL 95
>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase
superfamily contains LexA-related and type I signal
peptidase families. The S24 LexA protein domains
include: the lambda repressor CI/C2 family and related
bacterial prophage repressor proteins; LexA (EC
3.4.21.88), the repressor of genes in the cellular SOS
response to DNA damage; MucA and the related UmuD
proteins, which are lesion-bypass DNA polymerases,
induced in response to mitogenic DNA damage; RulA, a
component of the rulAB locus that confers resistance to
UV, and RuvA, which is a component of the RuvABC
resolvasome that catalyzes the resolution of Holliday
junctions that arise during genetic recombination and
DNA repair. The S26 type I signal peptidase (SPase)
family also includes mitochondrial inner membrane
protease (IMP)-like members. SPases are essential
membrane-bound proteases which function to cleave away
the amino-terminal signal peptide from the translocated
pre-protein, thus playing a crucial role in the
transport of proteins across membranes in all living
organisms. All members in this superfamily are unique
serine proteases that carry out catalysis using a
serine/lysine dyad instead of the prototypical
serine/histidine/aspartic acid triad found in most
serine proteases.
Length = 84
Score = 25.3 bits (56), Expect = 9.5
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 13/51 (25%)
Query: 146 DIILIATQIVGPADGSYYIIPYYGAGITI-------------VRSDNETYR 183
D++L+ P G + G +T+ + DN
Sbjct: 18 DLVLVDKSSYEPKRGDIVVFRLPGGELTVKRVIGLPGEGHYFLLGDNPNSP 68
>gnl|CDD|187759 cd09319, TDT_like_1, The Tellurite-resistance/Dicarboxylate
Transporter (TDT) family. The
Tellurite-resistance/Dicarboxylate Transporter (TDT)
family includes members from all three kingdoms, but
only three members of the family have been functionally
characterized: the TehA protein of E. coli functioning
as a tellurite-resistance uptake permease, the Mae1
protein of S. pombe functioning in the uptake of malate
and other dicarboxylates, and the sulfite efflux pump
(SSU1) of Saccharomyces cerevisiae. In plants, the
plasma membrane protein SLAC1 (Slow Anion
Channel-Associated 1), which is preferentially expressed
in guard cells, encodes a distant homolog of fungal and
bacterial dicarboxylate/malic acid transport proteins.
SLAC1 is essential in mediating stomatal responses to
physiological and stress stimuli. Members of the TDT
family exhibit 10 putative transmembrane alpha-helical
spanners (TMSs).
Length = 317
Score = 26.5 bits (59), Expect = 9.8
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 113 LGMFGADRFYLGYPALGLLKFCT--LGFMLIGYLVDIILIATQIV----GPADGS--YYI 164
LG A G L L LG L YLV I LI ++V P D + Y+I
Sbjct: 142 LGALLAPAVPAGREWLLFLALVLWLLGLAL--YLVVISLIDYRLVFFPFKPEDLAPPYWI 199
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.144 0.466
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,205,918
Number of extensions: 951060
Number of successful extensions: 1155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 35
Length of query: 196
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 104
Effective length of database: 6,857,034
Effective search space: 713131536
Effective search space used: 713131536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)