RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8106
         (196 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.0 bits (64), Expect = 0.70
 Identities = 3/9 (33%), Positives = 6/9 (66%)

Query: 187 DDWYQHHNE 195
           ++W Q  +E
Sbjct: 121 EEWNQRQSE 129


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 1.0
 Identities = 27/189 (14%), Positives = 52/189 (27%), Gaps = 65/189 (34%)

Query: 52  YIDRKTQQ-PKNCTKENLARVRCIAADNIICLETGNSTFYKDMRCRWTN--GYSFET-AM 107
           Y+D + Q  P+     N  R+  IA               +D    W N    + +    
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAE------------SIRDGLATWDNWKHVNCDKLTT 357

Query: 108 LLSIFLGMFGADRFYLGYPALGLLK---------FCTLGFMLIGYLVDII--------LI 150
           ++   L +     +   +  L +              + F +I   V ++        L+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 151 ATQIVGPADGSYYI---------------------IPYYGAGITIVRSDNETYRVPQDD- 188
             Q   P + +  I                     + +Y         D++    P  D 
Sbjct: 418 EKQ---PKESTISIPSIYLELKVKLENEYALHRSIVDHYNI---PKTFDSDDLIPPYLDQ 471

Query: 189 -WYQH---H 193
            +Y H   H
Sbjct: 472 YFYSHIGHH 480


>3pjv_D Cyclic dimeric GMP binding protein; LAPG, lyase; 1.77A {Pseudomonas
           fluorescens}
          Length = 130

 Score = 27.2 bits (60), Expect = 1.9
 Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 7/63 (11%)

Query: 135 TLGFMLIGYLVDIILIATQIVGPADGSYY---IIPYYGAGITIVRSDNETYR--VPQDDW 189
            L   L   + D  ++   +    D  YY    +       TIV  +       VP   W
Sbjct: 27  ALALSLTPNIDDPAMVELLVSSIFDSGYYSSIRVVDLKTDQTIVERNGIPAVTNVPD--W 84

Query: 190 YQH 192
           +  
Sbjct: 85  FVK 87


>1wba_A Winged bean albumin 1; SEED storage protein; 1.80A {Psophocarpus
           tetragonolobus} SCOP: b.42.4.1
          Length = 175

 Score = 26.6 bits (58), Expect = 5.0
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 158 ADGSYYIIPYY-GAGITIVRSDNETYRVPQD 187
             G Y I+ +  GAGI +V + NE    P  
Sbjct: 15  NRGKYTIVSFSDGAGIDVVATGNENPEDPLS 45


>1eyl_A RWCI-3, chymotrypsin inhibitor; beta trefoil, hydrolase inhibitor;
           HET: SO4; 1.90A {Psophocarpus tetragonolobus} SCOP:
           b.42.4.1 PDB: 1fn0_A* 2beb_A 2esu_A 1fmz_A* 2bea_A
           2et2_A 4wbc_A* 1wbc_A 2wbc_A* 1xg6_A 2qyi_B 3i29_B
           3i2x_A 3i2a_A 3qyd_A
          Length = 186

 Score = 25.8 bits (56), Expect = 7.6
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 158 ADGSYYIIPYY---GAGITIVRSDNET 181
             G+YY++P+    G GI   ++ NE 
Sbjct: 17  NGGTYYLLPHIWAHGGGIETAKTGNEP 43


>3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme;
           enolase,metal-binding,PSI-II, NYSGXRC, structural
           genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A
          Length = 398

 Score = 26.1 bits (58), Expect = 9.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 169 GAGITIVRSDNETYRVPQDDWYQHHN 194
           G G  +     + YRV +D+ + HH+
Sbjct: 372 GLGWDLNWDYIDQYRVSKDEGHHHHH 397


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.144    0.466 

Gapped
Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,160,234
Number of extensions: 178985
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 10
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)