RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8106
         (196 letters)



>d1j8ia_ d.9.1.1 (A:) Lymphotactin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 93

 Score = 30.6 bits (69), Expect = 0.027
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 12/56 (21%)

Query: 22 PSDNKVNYT-TNCE------TLRLGQYICPDPDPKY-----EYIDRKTQQPKNCTK 65
          P      YT T           + G  +C DP   +       +DRK+    N  +
Sbjct: 20 PVSRIKTYTITEGSLRAVIFITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQ 75


>d1un8a4 c.119.1.2 (A:1-335) Dihydroxyacetone kinase {Citrobacter
           freundii [TaxId: 546]}
          Length = 335

 Score = 26.4 bits (58), Expect = 2.4
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 117 GADRFYLGYPALGLLKFCTLGFMLIGYLVDIILIATQIVGPADGSYYIIPYYGAGI 172
           G +  ++G+   G+L     G +     VD +L A Q V    G   I+  Y    
Sbjct: 60  GHEPAHVGFIGKGMLTAAVCGDVFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDR 115


>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus
           thermophilus [TaxId: 274]}
          Length = 344

 Score = 26.2 bits (57), Expect = 3.1
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 21/96 (21%)

Query: 40  QYICPDPDPKYEYIDRKTQQPKNCTKENLARVRCIAADNIICLETGNSTFYKDMRCR-WT 98
                +   +   I  +  +  N  K    RV  +    +  LE+        +     T
Sbjct: 221 DPEKHEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGET 280

Query: 99  N-----GYSFETA---------------MLLSIFLG 114
                  Y+F+                 ML++ FLG
Sbjct: 281 RLFIRPPYTFKVVDALFTNFHLPRSTLLMLVAAFLG 316


>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 273

 Score = 25.4 bits (56), Expect = 4.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 120 RFYLGYPALGLLKFCTLGFMLIGY 143
            +++G+  +  + F  LG  LIGY
Sbjct: 28  PYFVGFFGVSAIFFIFLGVSLIGY 51


>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
           {Escherichia coli [TaxId: 562]}
          Length = 347

 Score = 25.2 bits (55), Expect = 6.2
 Identities = 13/54 (24%), Positives = 18/54 (33%)

Query: 117 GADRFYLGYPALGLLKFCTLGFMLIGYLVDIILIATQIVGPADGSYYIIPYYGA 170
           G +  + GY   G+L     G +      D I      V   +G   II  Y  
Sbjct: 46  GHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTG 99


>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 303

 Score = 24.7 bits (54), Expect = 8.3
 Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 110 SIFLGMFGA---DRFYLGYPALGLLKFCTLGFMLIGY 143
           S  LG FG       YLG   +  L    + F  IG 
Sbjct: 36  STLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGI 72


>d1n5ua2 a.126.1.1 (A:197-388) Serum albumin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 192

 Score = 24.5 bits (53), Expect = 8.8
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 34 ETLRLGQYICPDPDPKYEYIDRKTQQPKNCTKENLARVRCIAA 76
          +   L +YIC + D     +       + C K  L +  CIA 
Sbjct: 60 DRADLAKYICENQDSISSKLK------ECCEKPLLEKSHCIAE 96


>d2i5nc1 a.138.1.2 (C:1-332) Photosynthetic reaction centre
           (cytochrome subunit) {Rhodopseudomonas viridis [TaxId:
           1079]}
          Length = 332

 Score = 24.6 bits (53), Expect = 9.1
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 171 GITIVRSDNETYRVPQDDWYQHH 193
           GI +VR  N  Y  P +      
Sbjct: 270 GIRMVRDLNMNYLAPLNASLPAS 292


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.144    0.466 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 788,791
Number of extensions: 35981
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 13
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)