BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8107
(1613 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8N|A Chain A, Crystal Structure Of The Tiam1 Phccex Domain
Length = 279
Score = 265 bits (678), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 122/231 (52%), Positives = 164/231 (70%), Gaps = 1/231 (0%)
Query: 2 LSVKKWLLRKKHQ-IELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDG 60
L+VK +L+ KK++ +E A +R WK YWV LKG TL FY D R G ++ PKH + V+
Sbjct: 17 LAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVEN 76
Query: 61 AIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHRGKTGT 120
+I+Q +PEHPK+D++FCLS + GDA+LFQ Q ELENW+ +IHSACAAA ARH K T
Sbjct: 77 SIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVARHHHKEDT 136
Query: 121 LHLLQEEIFRLEKAIDSDNKLKHMADLQMSVLAEPETKQQINEQITQWEENLERLHCEQF 180
L LL+ EI +LE+ ID D K+K M ++Q+S + + + K+ I +QI WE+NLE+ + F
Sbjct: 137 LRLLKSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDLF 196
Query: 181 RLRCYMASLQNGELPNPKSLLTHVSRNTKCILNNLGVFTVSSFHAFICARS 231
R RCY+ASLQ GELPNPK LL SR TK + LG+F+VSSFHA + AR+
Sbjct: 197 RFRCYLASLQGGELPNPKRLLAFASRPTKVAMGRLGIFSVSSFHALVAART 247
>pdb|3A8P|A Chain A, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|B Chain B, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|C Chain C, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|D Chain D, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8Q|A Chain A, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|B Chain B, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|C Chain C, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|D Chain D, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
Length = 263
Score = 258 bits (659), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 162/229 (70%)
Query: 9 LRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPE 68
L+K+ ++EL +R WK YWV LKG TLLFY + ++AP+ + + +I+Q +PE
Sbjct: 25 LQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPE 84
Query: 69 HPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHRGKTGTLHLLQEEI 128
HPK++++FCLS + GD YLFQA Q +LENWV +IHSACA+ FA+ GK T+ LL+ +
Sbjct: 85 HPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAKKHGKEDTVRLLKSQT 144
Query: 129 FRLEKAIDSDNKLKHMADLQMSVLAEPETKQQINEQITQWEENLERLHCEQFRLRCYMAS 188
L + ID D+K+K MA+LQ+SV+++P+ ++ I QI QWE+NLE+ H + FR+RCY+AS
Sbjct: 145 RSLLQKIDMDSKMKKMAELQLSVVSDPKNRKAIENQIRQWEQNLEKFHMDLFRMRCYLAS 204
Query: 189 LQNGELPNPKSLLTHVSRNTKCILNNLGVFTVSSFHAFICARSPSLLNN 237
LQ GELPNPKSLL SR +K L LGV +VSSFHA +C+R S L
Sbjct: 205 LQGGELPNPKSLLAATSRPSKLALGRLGVLSVSSFHALVCSRDDSTLRK 253
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 228 bits (581), Expect = 2e-59, Method: Composition-based stats.
Identities = 109/185 (58%), Positives = 140/185 (75%)
Query: 586 RQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIV 645
RQL+DA+KL KVI EL+ETERTYVK+LN L E YL+PL+KETFL+ E++ LFGN+ E V
Sbjct: 4 RQLSDADKLRKVICELLETERTYVKDLNCLXERYLKPLQKETFLTQDELDVLFGNLTEXV 63
Query: 646 AFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKA 705
FQ +FL+ L + + D ++ QFK +LFS+G +FLYY + FKLYS+FCASH+K
Sbjct: 64 EFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKV 123
Query: 706 QKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCD 765
KVL + + A + FL ++NPRQQHSSTLESYLIKPIQR+LKYPLLL++L LTD +
Sbjct: 124 PKVLVKAKTDTAFKAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESE 183
Query: 766 EHLHL 770
EH HL
Sbjct: 184 EHYHL 188
Score = 139 bits (351), Expect = 9e-33, Method: Composition-based stats.
Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 2/185 (1%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWL 1275
L A+K KVA HINE Q+IHEE+GA+FD L + K+ DLS GDLL + V WL
Sbjct: 188 LDVAIKTXNKVASHINEXQKIHEEFGAVFDQLIAEQTGEKKEVADLSXGDLLLHTSVIWL 247
Query: 1276 NISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVL 1335
N LGK KK EL A FVFK+AVV + K+ +QKKKL+G E + R++
Sbjct: 248 NPPASLGKWKKEPELAA--FVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHX 305
Query: 1336 VPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQII 1395
+P +QVRA + D +++ + E++H++S+ + R E+V+ L S+ E R FLK++ I+
Sbjct: 306 IPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSIL 365
Query: 1396 RESVR 1400
R+ R
Sbjct: 366 RDKHR 370
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And Sodium
Length = 508
Score = 83.6 bits (205), Expect = 8e-16, Method: Composition-based stats.
Identities = 83/318 (26%), Positives = 135/318 (42%), Gaps = 34/318 (10%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 24 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 83
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W PTD + + P E
Sbjct: 84 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP--PTDPDSILRPFKE-- 139
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
F Y + + V E P + + L+ I I+++GI +M
Sbjct: 140 -----FLY-SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 193
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 194 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 253
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 254 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 308
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 309 KAGAFNLGFITLPAIFSQ 326
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 393 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 451
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 452 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 483
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And Sodium
Length = 517
Score = 83.2 bits (204), Expect = 1e-15, Method: Composition-based stats.
Identities = 83/318 (26%), Positives = 135/318 (42%), Gaps = 33/318 (10%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 24 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 83
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W PTD + + P E
Sbjct: 84 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPP-PTDPDSILRPFKE-- 140
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
F Y + + V E P + + L+ I I+++GI +M
Sbjct: 141 -----FLY-SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 194
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 195 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 254
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 255 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 309
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 310 KAGAFNLGFITLPAIFSQ 327
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 394 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 452
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 453 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 484
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound Og
Length = 513
Score = 79.7 bits (195), Expect = 1e-14, Method: Composition-based stats.
Identities = 78/318 (24%), Positives = 132/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICNALTAIY--ASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N ++ S+ + A + F ++NA +A
Sbjct: 261 AIITYASYVRKDQDIVLSGLTAATLNEKASVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To 4-Fluoro-L-Phenylalanine
And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine And
Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With L-Leucine,
Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With L-Leucine,
Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space Group
C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space Group
P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space Group
P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space Group
P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space Group
P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space Group
P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space Group
P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space Group
P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space Group
P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With L-Leucine,
Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With L-alanine,
Sodium, And Clomipramine
Length = 519
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 132/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 261 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 132/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 261 AIITYASYVRKDQDIVLSGLTAATLNEAAEVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And
L- Tryptophan
Length = 519
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 132/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 261 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 132/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 24 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 83
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 84 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 138
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 139 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 196
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 197 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 256
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 257 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 311
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 312 KAGAFNLGFITLPAIFSQ 329
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 396 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 454
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 455 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 486
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 132/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 261 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 132/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 24 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 83
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 84 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 138
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 139 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMCINVSILIRGISKGIERFAKIAMP 196
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 197 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 256
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 257 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 311
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 312 KAGAFNLGFITLPAIFSQ 329
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 396 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 454
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 455 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 486
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 15/186 (8%)
Query: 578 NQSSLNPSRQLTDAEKL-SKVIIELIETERTYVKNLNGLLENYLEPL-KKETFLSGAEIN 635
N L R L + +++ + VI E++ TER Y+K+L + E YL+ K+ S ++
Sbjct: 25 NSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLK 84
Query: 636 ALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLY 695
+FGNI +I FQ F+++L E N D H L IG FL + + F +Y
Sbjct: 85 VIFGNIEDIYRFQMGFVRDL-EKQYNNDDPH-----------LSEIGPCFLEHQDGFWIY 132
Query: 696 SSFCASHSKAQKVLHPNEGNQALQEFLSS-RNPRQQHSSTLESYLIKPIQRILKYPLLLQ 754
S +C +H A L + Q F + R +Q ++ +L+ P+Q+I KYPL L
Sbjct: 133 SEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLA 192
Query: 755 QLCNLT 760
+L T
Sbjct: 193 ELLKYT 198
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 78.2 bits (191), Expect = 4e-14, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 131/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 25 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 84
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 85 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 139
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 140 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 197
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 198 TLFCLAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 257
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 258 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 312
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 313 KAGAFNLGFITLPAIFSQ 330
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 397 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 455
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 456 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 487
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 519
Score = 77.8 bits (190), Expect = 4e-14, Method: Composition-based stats.
Identities = 78/318 (24%), Positives = 132/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+Y+ I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYFVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 261 AIITYASYVRKDQDIVLSGLTAATLNEAAEVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Selenomethionine
From Lipid Bicelles
Length = 513
Score = 77.4 bits (189), Expect = 6e-14, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 131/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F + L FG
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFATLSLGFG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 261 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 76.6 bits (187), Expect = 9e-14, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Query: 563 SPVETHRTSPTGSMANQSSLNPSRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEP 622
+P+ + + G QSS + R + VI E++ TER Y+K+L + E Y+
Sbjct: 133 APLAGNSGAEDGGAEAQSSKDQXR--------TNVINEILSTERDYIKHLRDICEGYVRQ 184
Query: 623 LKKET-FLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSI 681
+K S ++ +FGNI +I Q+ F++ L + E + L +
Sbjct: 185 CRKRADXFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRE------------RPHLSEL 232
Query: 682 GSAFLYYVNHFKLYSSFCASHSKA-QKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLI 740
G+ FL + F++YS +C +H A ++ + ++ + F + R ++ +L+ +L+
Sbjct: 233 GACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKXIDISLDGFLL 292
Query: 741 KPIQRILKYPLLLQQLCNLTDPH 763
P+Q+I KYPL L +L T P
Sbjct: 293 TPVQKICKYPLQLAELLKYTHPQ 315
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium
And L- Tryptophan
Length = 519
Score = 76.6 bits (187), Expect = 1e-13, Method: Composition-based stats.
Identities = 78/318 (24%), Positives = 131/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L G
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 261 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And
L- Tryptophan
Length = 519
Score = 76.6 bits (187), Expect = 1e-13, Method: Composition-based stats.
Identities = 78/318 (24%), Positives = 131/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L G
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + SY + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 261 AIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 597 VIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLV 656
V+ ++ETE Y K L +L YL PL+ LS A I+ L GN+ EI +FQ Q LV
Sbjct: 17 VLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQ----QMLV 72
Query: 657 EALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFK-LYSSFCASHSKAQKVLHPNEGN 715
++LE Q +G FL + K LY ++CA+H A VL E +
Sbjct: 73 QSLEECTKLPEAQQ---------RVGGCFLNLMPQMKTLYLTYCANHPSAVNVL--TEHS 121
Query: 716 QALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQL-CNLTDPHCD 765
+ L EF+ ++ L + L KP R+ KYP LL++L ++ D H D
Sbjct: 122 EELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTD 172
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 40/212 (18%)
Query: 563 SPVETHRTSPTGSMANQSSLNPSRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEP 622
+P+ + + G QSS + R + VI E++ TER Y+K+L + E Y+
Sbjct: 96 APLAGNSGAEDGGAEAQSSKDQMR--------TNVINEILSTERDYIKHLRDICEGYVRQ 147
Query: 623 LKKET-FLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSI 681
+K S ++ +FGNI +I Q+ F++ L + E + L +
Sbjct: 148 CRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRE------------RPHLSEL 195
Query: 682 GSAFLYYVNHFKLYSSFCASH----------SKAQKVLHPNEGNQALQEFLSSRNPRQQH 731
G+ FL + F++YS +C +H +K K ++ E + LQ+ +
Sbjct: 196 GACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDI------- 248
Query: 732 SSTLESYLIKPIQRILKYPLLLQQLCNLTDPH 763
+L+ +L+ P+Q+I KYPL L +L T P
Sbjct: 249 --SLDGFLLTPVQKICKYPLQLAELLKYTHPQ 278
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In
Complex With Fab
Length = 519
Score = 75.9 bits (185), Expect = 2e-13, Method: Composition-based stats.
Identities = 78/318 (24%), Positives = 131/318 (41%), Gaps = 31/318 (9%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGG- 922
FL+ P +A N AF+IP+++ +L GIPL IE +G+ G I L
Sbjct: 28 FLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87
Query: 923 -----VGISSCLVTFFVALYYNVIITWCXXXXXXXXXXXXXXXXCPTDHNGTIIPECELS 977
+G+ + VA+YY I +W P P+ L
Sbjct: 88 RFAKILGVFGLWIPLVVAIYYVYIESW-----TLGFAIKFLVGLVPEPPPNATDPDSILR 142
Query: 978 SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
+ + + + V E P + + L+ I I+++GI +M
Sbjct: 143 PFKEFLY--SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200
Query: 1038 PYIVLTIFFIRGITL---PGAGA--GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092
+L +F + + L P A GL ++TP EKL DP VW+ A Q+F++ L FG
Sbjct: 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFG 260
Query: 1093 SLIAFGSYNQPNNNCVRDVIMVSICN--ALTAIYASVVVFAILGFKAMSNAAEGTGLAFI 1150
++I + S + + + V + + N A + S+ + A + F ++NA +A
Sbjct: 261 AIITYASAVRKDQDIVLSGLTAATLNEAAEVILGGSISIPAAVAFFGVANA-----VAIA 315
Query: 1151 AAEGTGLAFI----VFTQ 1164
A L FI +F+Q
Sbjct: 316 KAGAFNLGFITLPAIFSQ 333
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYK-PGWYWQITWRFLGPA 852
L D +AGTIG+V L E++ +I+G +K +I K P Y+ + R++ PA
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPA 458
Query: 853 IMSCILV---SSIICRFLKKPSYSAWNRAFLI 881
++ +LV I + +++ ++ W F I
Sbjct: 459 FLAVLLVVWAREYIPKIMEETHWTVWITRFYI 490
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 116/257 (45%), Gaps = 49/257 (19%)
Query: 597 VIIELIETERTYVKNLNGLLENYL----EPLKKETFLSGAE--INALFGNILEIVAFQ-R 649
V+ EL++TER YV+ L +LE Y PL +G + N LFGN+ EI F R
Sbjct: 15 VMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNR 74
Query: 650 QFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVL 709
FL+ L ++ +G FL + F++Y +C + +++ +
Sbjct: 75 IFLRELESCIDCPE----------------LVGRCFLERMEEFQIYEKYCQNKPRSESLW 118
Query: 710 HPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCD--EH 767
QE + H +L+SYL+KP+QRI KY LLL+++ + HC+ E
Sbjct: 119 RQCSDCPFFQEC----QKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYS-KHCEGAED 173
Query: 768 LH-----LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIY- 821
L ++G++ ++ + LI TG +D G +G +L M ++
Sbjct: 174 LQEALSSILGILKAVNDSMHLIAITG--------YDGNLGDLGKLL-----MQGSFSVWT 220
Query: 822 GHEKFTNDIYEMTGYKP 838
H+K + E+ +KP
Sbjct: 221 DHKKGHTKVKELARFKP 237
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 116/257 (45%), Gaps = 49/257 (19%)
Query: 597 VIIELIETERTYVKNLNGLLENYL----EPLKKETFLSGAE--INALFGNILEIVAFQ-R 649
V+ EL++TER YV+ L +LE Y PL +G + N LFGN+ EI F R
Sbjct: 15 VMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNR 74
Query: 650 QFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVL 709
FL+ L ++ +G FL + F++Y +C + +++ +
Sbjct: 75 IFLRELESCIDCPE----------------LVGRCFLERMEEFQIYEKYCQNKPRSESLW 118
Query: 710 HPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCD--EH 767
QE + H +L+SYL+KP+QRI KY LLL+++ + HC+ E
Sbjct: 119 RQCSDCPFFQEC----QKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYS-KHCEGAED 173
Query: 768 LH-----LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIY- 821
L ++G++ ++ + LI TG +D G +G +L M ++
Sbjct: 174 LQEALSSILGILKAVNDSMHLIAITG--------YDGNLGDLGKLL-----MQGSFSVWT 220
Query: 822 GHEKFTNDIYEMTGYKP 838
H+K + E+ +KP
Sbjct: 221 DHKKGHTKVKELARFKP 237
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 116/257 (45%), Gaps = 49/257 (19%)
Query: 597 VIIELIETERTYVKNLNGLLENYL----EPLKKETFLSGAE--INALFGNILEIVAFQ-R 649
V+ EL++TER YV+ L +LE Y PL +G + N LFGN+ EI F R
Sbjct: 15 VMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNR 74
Query: 650 QFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVL 709
FL+ L ++ +G FL + F++Y +C + +++ +
Sbjct: 75 IFLRELESCIDCPE----------------LVGRCFLERMEEFQIYEKYCQNKPRSESLW 118
Query: 710 HPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCD--EH 767
QE + H +L+SYL+KP+QRI KY LLL+++ + HC+ E
Sbjct: 119 RQCSDCPFFQEC----QKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYS-KHCEGAED 173
Query: 768 LH-----LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIY- 821
L ++G++ ++ + LI TG +D G +G +L M ++
Sbjct: 174 LQEALSSILGILKAVNDSMHLIAITG--------YDGNLGDLGKLL-----MQGSFSVWT 220
Query: 822 GHEKFTNDIYEMTGYKP 838
H+K + E+ +KP
Sbjct: 221 DHKKGHTKVKELARFKP 237
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 36/170 (21%)
Query: 597 VIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEI---------NALFGNILEIVAF 647
++ EL++TE+ YV++L+ LE YL + SG E + +FGNI EI F
Sbjct: 16 IMAELLQTEKAYVRDLHECLETYLWEMT-----SGVEEIPPGILNKEHIIFGNIQEIYDF 70
Query: 648 QRQ-FLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQ 706
FL+ L +++ + +G F+ + + F++Y ++C + +
Sbjct: 71 HNNIFLKEL----------------EKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSN 114
Query: 707 KVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQL 756
+++ + G F R ++++ SYLIKP+QR+ KY LLL++L
Sbjct: 115 QLILEHAGT-----FFDEIQQRHGLANSISSYLIKPVQRVTKYQLLLKEL 159
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 36/170 (21%)
Query: 597 VIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAE------INA---LFGNILEIVAF 647
++ ELI+TE+ YV++L ++ YL + SG E +N +FGN+ EI F
Sbjct: 15 IMAELIQTEKAYVRDLRECMDTYLWEM-----TSGVEEIPPGIVNKELIIFGNMQEIYEF 69
Query: 648 QRQ-FLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQ 706
FL+ L +++ + +G F+ + + F++Y ++C + +
Sbjct: 70 HNNIFLKEL----------------EKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDST 113
Query: 707 KVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQL 756
+++ + G+ + R ++++ SYLIKP+QRI KY LLL++L
Sbjct: 114 QLILEHAGS-----YFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKEL 158
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7
A
Length = 311
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 36/170 (21%)
Query: 597 VIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAE------INA---LFGNILEIVAF 647
++ ELI+TE+ YV++L ++ YL + SG E +N +FGN+ EI F
Sbjct: 13 IMAELIQTEKAYVRDLRECMDTYLWEM-----TSGVEEIPPGIVNKELIIFGNMQEIYEF 67
Query: 648 QRQ-FLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQ 706
FL+ L +++ + +G F+ + + F++Y ++C + +
Sbjct: 68 HNNIFLKEL----------------EKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDST 111
Query: 707 KVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQL 756
+++ + G+ + R ++++ SYLIKP+QRI KY LLL++L
Sbjct: 112 QLILEHAGS-----YFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKEL 156
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 120/291 (41%), Gaps = 50/291 (17%)
Query: 597 VIIELIETERTYVKNLNGLLENYL----EPLKKETFLSGAE--INALFGNILEIVAFQ-R 649
V EL++TER YV+ L +LE Y PL +G + N LFGN EI F R
Sbjct: 15 VXNELLDTERAYVEELLCVLEGYAAEXDNPLXAHLISTGLQNKKNILFGNXEEIYHFHNR 74
Query: 650 QFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVL 709
FL+ L ++ +G FL F++Y +C + +++ +
Sbjct: 75 IFLRELESCIDCPE----------------LVGRCFLERXEEFQIYEKYCQNKPRSESLW 118
Query: 710 HPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCD--EH 767
QE + H +L+SYL+KP+QRI KY LLL++ + HC+ E
Sbjct: 119 RQCSDCPFFQEC----QKKLDHKLSLDSYLLKPVQRITKYQLLLKEXLKYS-KHCEGAED 173
Query: 768 LH-----LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYG 822
L ++G++ ++ LI TG +D G +G L+ +
Sbjct: 174 LQEALSSILGILKAVNDSXHLIAITG--------YDGNLGDLG----KLLXQGSFSVWTD 221
Query: 823 HEKFTNDIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYS 873
H+K + E+ +KP Q A++ C + K PSYS
Sbjct: 222 HKKGHTKVKELARFKPX---QRHLFLHEKAVLFCKKREENGEGYEKAPSYS 269
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 19/187 (10%)
Query: 587 QLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVA 646
++T+ +K + E+ +TE Y L + +++++PL++ FL ++ +F NI E+ +
Sbjct: 21 KMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR--FLKPQDMETIFVNIEELFS 78
Query: 647 FQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQ 706
FL+ L +AL L+ + F+ Y F +Y +C+ A
Sbjct: 79 VHTHFLKELKDALAGPG-----------ATTLYQV---FIKYKERFLVYGRYCSQVESAS 124
Query: 707 KVL-HPNEGNQALQEFLSSRNPRQQHSS-TLESYLIKPIQRILKYPLLLQQLCNLT-DPH 763
K L + +Q L + R + TL L+ P+QR+LKY LLLQ+L T D
Sbjct: 125 KHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDAT 184
Query: 764 CDEHLHL 770
E+L L
Sbjct: 185 EKENLRL 191
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 19/188 (10%)
Query: 587 QLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVA 646
++T+ +K + E+ +TE Y L + +++++PL++ FL ++ +F NI E+ +
Sbjct: 19 KMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR--FLKPQDMETIFVNIEELFS 76
Query: 647 FQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQ 706
FL+ L +AL L+ + F+ Y F +Y +C+ A
Sbjct: 77 VHTHFLKELKDALAGPG-----------ATTLYQV---FIKYKERFLVYGRYCSQVESAS 122
Query: 707 KVLHP-NEGNQALQEFLSSRNPRQQHSS-TLESYLIKPIQRILKYPLLLQQLCNLT-DPH 763
K L + +Q L + R + TL L+ P+QR+LKY LLLQ+L T D
Sbjct: 123 KHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDAT 182
Query: 764 CDEHLHLV 771
E+L L
Sbjct: 183 EKENLRLA 190
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 18/176 (10%)
Query: 587 QLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVA 646
++T+ +K + E+ +TE Y L + +++L+PL++ FL +I +F NI +++
Sbjct: 191 KMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR--FLKPQDIEIIFINIEDLLR 248
Query: 647 FQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQ 706
FL+ + EAL ++ F+ Y F +Y +C+ A
Sbjct: 249 VHTHFLKEMKEALGTPG--------------AANLYQVFIKYKERFLVYGRYCSQVESAS 294
Query: 707 KVLHP-NEGNQALQEFLSSRNPRQQHSS-TLESYLIKPIQRILKYPLLLQQLCNLT 760
K L + +Q L + R + TL L+ P+QR+LKY LLLQ+L T
Sbjct: 295 KHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT 350
>pdb|2RGN|B Chain B, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|E Chain E, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 354
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 592 EKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETF---LSGAEINALFGNILEIVAFQ 648
E+ V+ EL+ETE+ YV +L ++E Y+ + + L G + +FGNI +I +
Sbjct: 11 ERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRD-RIVFGNIQQIYEWH 69
Query: 649 RQ-FLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQK 707
R FLQ L L++ D+ + F+ + +Y +C + K++
Sbjct: 70 RDYFLQELQRCLKD-PDW---------------LAQLFIKHERRLHMYVVYCQNKPKSEH 113
Query: 708 VLHPNEGNQALQEFLSSRNPRQQ--HSSTLESYLIKPIQRILKYPLLLQ 754
V+ G+ +E RQQ H L LIKP+QRI+KY LLL+
Sbjct: 114 VVS-EFGDSYFEEL------RQQLGHRLQLNDLLIKPVQRIMKYQLLLK 155
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 588 LTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAF 647
+T+ +K + E+ +TE Y L + +++L+PL++ FL +I +F NI +++
Sbjct: 1 MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR--FLKPQDIEIIFINIEDLLRV 58
Query: 648 QRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQK 707
FL+ + EAL ++ F+ Y F +Y +C+ A K
Sbjct: 59 HTHFLKEMKEALGTPG--------------AANLYQVFIKYKERFLVYGRYCSQVESASK 104
Query: 708 VLHP-NEGNQALQEFLSSRNPRQQHSS-TLESYLIKPIQRILKYPLLLQQLCNLT 760
L + +Q L + R + TL L+ P+QR+LKY LLLQ+L T
Sbjct: 105 HLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT 159
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 598 IIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVE 657
I ELI+TE Y+ +L ++E + + + + FL+ E+ +F N E++ + L+ L
Sbjct: 103 IHELIQTEERYMADLQLVVEVFQKRMAESGFLTEGEMALIFVNWKELIMSNTKLLKAL-- 160
Query: 658 ALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLH-PNEGNQ 716
++ K + IG ++H + Y FC+ +L + +
Sbjct: 161 --------RVRKKTGGEKMPVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDT 212
Query: 717 ALQEFLS--SRNPRQQHSSTLESYLIKPIQRILKYPLLLQQ-LCNLTDPHCD 765
+EFL + +PR + L S+L+KP+QRI +YPLL++ L N + H D
Sbjct: 213 DFKEFLKKLASDPRCK-GMPLSSFLLKPMQRITRYPLLIRSILENTPESHAD 263
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 598 IIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVE 657
I ELI+TE Y+ +L ++E + + + + FL+ E+ +F N E++ + L+ L
Sbjct: 32 IHELIQTEERYMADLQLVVEVFQKRMAESGFLTEGEMALIFVNWKELIMSNTKLLKALRV 91
Query: 658 ALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLH-PNEGNQ 716
+ + K + IG ++H + Y FC+ +L + +
Sbjct: 92 RKKTGGE----------KMPVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDT 141
Query: 717 ALQEFLS--SRNPRQQHSSTLESYLIKPIQRILKYPLLLQQ-LCNLTDPHCD 765
+EFL + +PR + L S+L+KP+QRI +YPLL++ L N + H D
Sbjct: 142 DFKEFLKKLASDPRCK-GMPLSSFLLKPMQRITRYPLLIRSILENTPESHAD 192
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 25/213 (11%)
Query: 572 PTGSMANQSSLNPSRQ----------LTDAE-KLSKVIIELIETERTYVKNLNGLLENYL 620
P+ + + ++PS+Q LT E K I ELI TE YV +L + E +
Sbjct: 50 PSNYVKLTTDMDPSQQWCSDLHLLDMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQ 109
Query: 621 EPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFS 680
+PL + L+ E+ +F N E++ + L+ L + S K +
Sbjct: 110 KPLTESELLTEKEVAMIFVNWKELIMCNIKLLKAL----------RVRKKMSGEKMPVKM 159
Query: 681 IGSAFLYYVNHFKLYSSFCASH-SKAQKVLHPNEGNQALQEFLS--SRNPRQQHSSTLES 737
IG + H + Y FC+ + A + + +EF+ + +PR + L S
Sbjct: 160 IGDILSAQLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCK-GMPLSS 218
Query: 738 YLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHL 770
+++KP+QR+ +YPL+++ + T + +H HL
Sbjct: 219 FILKPMQRVTRYPLIIKNILENTPENHPDHSHL 251
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 17/202 (8%)
Query: 593 KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFL 652
K + I EL + E +++L + Y +P K + + E+N +FG + ++ + L
Sbjct: 19 KRQEAIFELSQGEEDLIEDLKLAKKAYHDPXLKLSIXTEQELNQIFGTLDSLIPLHEELL 78
Query: 653 QNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPN 712
L + + + H +G + ++ Y S+C++ A+ +L
Sbjct: 79 SQLRDVRKPDGSTEH-------------VGPILVGWLPCLSSYDSYCSNQVAAKALLDHK 125
Query: 713 EGNQALQEFLSSRNPRQQHSSTLE--SYLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHL 770
+ + +Q+FL R S L+ ++L P R++KYPLLL+++ T + HL
Sbjct: 126 KQDHRVQDFL-QRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHL 184
Query: 771 VGVVCLISFLVGLIFT-TGAGE 791
+ +I +V I T TG E
Sbjct: 185 EEAINIIQGIVAEINTKTGESE 206
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 598 IIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVE 657
I ELI TE YV +L + E + +PL + L+ E+ +F N E++ + L+ L
Sbjct: 14 IHELIVTEENYVNDLQLVTEIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKAL-- 71
Query: 658 ALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASH-SKAQKVLHPNEGNQ 716
+ S K + IG + H + Y FC+ + A + +
Sbjct: 72 --------RVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAP 123
Query: 717 ALQEFLS--SRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHL 770
+EF+ +PR + L S+++KP+QR+ +YPL+++ + T + +H HL
Sbjct: 124 DFKEFVKRLEMDPRCK-GMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHL 178
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 598 IIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVE 657
I ELI TE YV +L + E + +PL + L+ E+ +F N E++ + L+ L
Sbjct: 14 IHELIVTEENYVNDLQLVTEIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKAL-- 71
Query: 658 ALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASH-SKAQKVLHPNEGNQ 716
+ S K + IG + H + Y FC+ + A + +
Sbjct: 72 --------RVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAP 123
Query: 717 ALQEFLS--SRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHL 770
+EF+ + +PR + L +++KP+QR+ +YPL+++ + T + +H HL
Sbjct: 124 DFKEFVKRLAMDPRCK-GMPLSEFILKPMQRVTRYPLIIKNILENTPENHPDHSHL 178
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 18/217 (8%)
Query: 579 QSSLNPSRQLTDAE-KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINAL 637
Q + LT E + + I E+ E+ +++L + Y +P+ K + +S E+ +
Sbjct: 17 QGDITMKESLTTREIRRQEAIYEMSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHI 76
Query: 638 FGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSS 697
FG++ + L + EA + + IG + ++ Y
Sbjct: 77 FGDLDSYIPLHEDLLTRIGEATKPDGTVEQ-------------IGHILVSWLPRLNAYRG 123
Query: 698 FCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLE--SYLIKPIQRILKYPLLLQQ 755
+C++ A+ +L + + +Q+FL R S L+ S+L P R++KYPLLL++
Sbjct: 124 YCSNQLAAKALLDQKKQDPRVQDFL-QRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKE 182
Query: 756 LCNLT-DPHCDEHLHLVGVVCLISFLVGLIFTTGAGE 791
+ T H D L ++ + L + G E
Sbjct: 183 ILKHTPKEHPDVQLLEDAILIIQGVLSDINLKKGESE 219
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 593 KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFL 652
K +VI EL+ TE +V+ L L + + +P+ + F E+ +F ++ E++ FL
Sbjct: 180 KRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFL 239
Query: 653 QNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHF------KLYSSFCASHSKAQ 706
L++ Q S + ++ IG L + K+ S FC+ S A
Sbjct: 240 DRLMKRR----------QESGY--LIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFAL 287
Query: 707 KVLHPNEGNQA-----LQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLC-NLT 760
+ L + +QE S R+ L+ + +QR+ KYPLLLQ + N
Sbjct: 288 EQLKAKQRKDPRFCAFVQEAESRPRCRRLQ---LKDMIPTEMQRLTKYPLLLQSIGQNTE 344
Query: 761 DPHCDEHLHLVGVVC 775
+P E + L C
Sbjct: 345 EPTEREKVELAAECC 359
>pdb|2DTC|A Chain A, Crystal Structure Of Ms0666
pdb|2DTC|B Chain B, Crystal Structure Of Ms0666
Length = 126
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 9 LRKKHQIELARK---RGWKGYWVCLKGTTLLFYPCDSREG---RSVDAAPKHLIIVDGAI 62
LR+K ++ RK W YWV L G TLL+Y S G + + P + + G
Sbjct: 7 LRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWX 66
Query: 63 MQPIPEHPKRDYIFCLSTA-FGDAYLFQAPCQVELENWVNSIHSACAAA 110
+Q +P+ P+ IF L+ G+ Y FQ + W + AC ++
Sbjct: 67 VQ-LPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 593 KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFL 652
K +VI EL+ TE +V+ L L + + +P+ + F E+ +F ++ E++ FL
Sbjct: 67 KRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFL 126
Query: 653 QNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHF------KLYSSFCASHSKAQ 706
L++ Q S + ++ IG L + K+ S FC+ S A
Sbjct: 127 DRLMKR----------RQESGY--LIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFAL 174
Query: 707 KVLHPNEGNQA-----LQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLC-NLT 760
+ L + +QE S R+ L+ + +QR+ KYPLLLQ + N
Sbjct: 175 EQLKAKQRKDPRFCAFVQEAESRPRCRRLQ---LKDMIPTEMQRLTKYPLLLQSIGQNTE 231
Query: 761 DPHCDEHLHLVGVVC 775
+P E + L C
Sbjct: 232 EPTEREKVELAAECC 246
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 25/194 (12%)
Query: 593 KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFL 652
K +VI EL+ TE +V+ L L + + +P+ + F E+ +F ++ E++ FL
Sbjct: 25 KRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFL 84
Query: 653 QNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHF------KLYSSFCASHSKAQ 706
L++ Q S + ++ IG L + K+ S FC+ S A
Sbjct: 85 DRLMKR----------RQESGY--LIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFAL 132
Query: 707 KVLHPNEGNQ----ALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLC-NLTD 761
+ L + A + SR PR + L+ + +QR+ KYPLLLQ + N +
Sbjct: 133 EQLKAKQRKDPRFCAFVQEAESR-PRCRRLQ-LKDMIPTEMQRLTKYPLLLQSIGQNTEE 190
Query: 762 PHCDEHLHLVGVVC 775
P E + L C
Sbjct: 191 PTEREKVELAAECC 204
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 25/194 (12%)
Query: 593 KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFL 652
K +VI EL+ TE +V+ L L + + +P+ + F E+ +F ++ E++ FL
Sbjct: 27 KRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFL 86
Query: 653 QNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHF------KLYSSFCASHSKAQ 706
L++ Q S + ++ IG L + K+ S FC+ S A
Sbjct: 87 DRLMKR----------RQESGY--LIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFAL 134
Query: 707 KVLHPNEGNQ----ALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLC-NLTD 761
+ L + A + SR PR + L+ + +QR+ KYPLLLQ + N +
Sbjct: 135 EQLKAKQRKDPRFCAFVQEAESR-PRCRRLQ-LKDMIPTEMQRLTKYPLLLQSIGQNTEE 192
Query: 762 PHCDEHLHLVGVVC 775
P E + L C
Sbjct: 193 PTEREKVELAAECC 206
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 396 EDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE 434
E + H G++KGDEIM ING IV+D + E+ LQ+
Sbjct: 52 EGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQK 90
>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain
Length = 113
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 23 WKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIM-QPIPEHPKRDYIFCLSTA 81
WK WV L + FY S D +PK +I + G+ + P + KR ++F ++T
Sbjct: 21 WKPMWVVLLEDGIEFYKKKS------DNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTT 74
Query: 82 FGDAYLFQAPCQVELENWVNSIHSA 106
+ FQA E + WV I+ A
Sbjct: 75 KQQDHFFQAAFLEERDAWVRDINKA 99
>pdb|1BTN|A Chain A, Structure Of The Binding Site For Inositol Phosphates In A
Ph Domain
pdb|1MPH|A Chain A, Pleckstrin Homology Domain From Mouse Beta-Spectrin, Nmr,
50 Structures
Length = 106
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 8 LLRKKHQIEL----ARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHL---IIVDG 60
L +KH+ E A R W + + + FY D++ S P H + +
Sbjct: 4 FLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYK-DAKSAAS--GIPYHSEVPVSLKE 60
Query: 61 AIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
AI + ++ K+ ++F L + G+ YLFQA E+ W+ +I SA
Sbjct: 61 AICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 29/199 (14%)
Query: 593 KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFL 652
K +VI EL TER +V+ L L + + + + +E LS +E+ +F N+ +I+ L
Sbjct: 24 KRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILSPSELRKIFSNLEDILQLH-IGL 82
Query: 653 QNLVEALENEADFHHFDQSSQFKNILFS-IGSAFLYYVNHFKLYSSFCASHSKAQKVLHP 711
++A+ + DQ + FS G L + ++FC++ A +++
Sbjct: 83 NEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHA-----AATFCSNQPFALEMIKS 137
Query: 712 NEGNQA-LQEFL--SSRNP---RQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTD---- 761
+ + Q F+ + NP R Q L+ + +QR+ KYPLLL + T+
Sbjct: 138 RQKKDSRFQTFVQDAESNPLCRRLQ----LKDIIPTQMQRLTKYPLLLDNIAKYTEWPTE 193
Query: 762 --------PHCDEHLHLVG 772
HC + L+ V
Sbjct: 194 REKVKKAADHCRQILNFVN 212
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 40.0 bits (92), Expect = 0.011, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 349 VEVCAKILYQVELQRT-TLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLI 407
+E+C K+ + ++++ T +GFS+ + + E+ R+ YV+ V++ +A GL
Sbjct: 9 IEICPKVTQSIHIEKSDTAADTYGFSLSS-VEEDGIRR----LYVNSVKETGLASKKGLK 63
Query: 408 KGDEIMVINGAIVSDLDMMYLESVLQEELSLCMMMRS 444
GDEI+ IN L+ L+ L + SL +++R+
Sbjct: 64 AGDEILEINNRAADALNSSMLKDFLSQP-SLGLLVRT 99
>pdb|1WJM|A Chain A, Solution Structure Of Pleckstrin Homology Domain Of Human
Beta Iii Spectrin
Length = 123
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 8 LLRKKHQIEL----ARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAA-------PKHLI 56
+L +K ++E A R W+ + L+ +L FY ++ ++ A P L
Sbjct: 13 MLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFY----KDAKAASAGVPYHGEVPVSLA 68
Query: 57 IVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAA 110
G++ ++ KR ++F L G YLFQA + E+ +W+ +++A A+
Sbjct: 69 RAQGSVAF---DYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG 119
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 21/183 (11%)
Query: 596 KVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNL 655
+VI EL TE ++++ L L + + +KKE + E+ LF N+ E++ + + +
Sbjct: 66 EVINELFVTEASHLRTLRVLDLIFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAM 125
Query: 656 VEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNH------FKLYSSFCASHSKAQKVL 709
+ E I+ I L + ++ + FC+ S A +++
Sbjct: 126 KKLREEGP-------------IIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELI 172
Query: 710 HPNEGNQA-LQEFLSSRNPRQQ-HSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEH 767
+ ++ Q F+ Q L +I +QR+ KYPLLL+ + T+ EH
Sbjct: 173 KTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEH 232
Query: 768 LHL 770
L
Sbjct: 233 EKL 235
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 21/183 (11%)
Query: 596 KVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNL 655
+VI EL TE ++++ L L + + +KKE + E+ LF N+ E++ + + +
Sbjct: 29 EVINELFVTEASHLRTLRVLDLIFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAM 88
Query: 656 VEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNH------FKLYSSFCASHSKAQKVL 709
+ E I+ I L + ++ + FC+ S A +++
Sbjct: 89 KKLREEGP-------------IIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELI 135
Query: 710 HPNEGNQA-LQEFLSSRNPRQQ-HSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEH 767
+ ++ Q F+ Q L +I +QR+ KYPLLL+ + T+ EH
Sbjct: 136 KTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEH 195
Query: 768 LHL 770
L
Sbjct: 196 EKL 198
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 21/183 (11%)
Query: 596 KVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNL 655
+VI EL TE ++++ L L + + +KKE + E+ LF N+ E++ + + +
Sbjct: 24 EVINELFVTEASHLRTLRVLDLIFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAM 83
Query: 656 VEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNH------FKLYSSFCASHSKAQKVL 709
+ L E I+ I L + ++ + FC+ S A +++
Sbjct: 84 -KKLREEGP------------IIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELI 130
Query: 710 HPNEGNQA-LQEFLSSRNPRQQ-HSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEH 767
+ ++ Q F+ Q L +I +QR+ KYPLLL+ + T+ EH
Sbjct: 131 KTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEH 190
Query: 768 LHL 770
L
Sbjct: 191 EKL 193
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 36.6 bits (83), Expect = 0.10, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Query: 600 ELIETERTYVKNL-------NGLLENYLEPLKKE--TFLSGAEINALFGNILEIVAFQRQ 650
EL+ +E+ YV+ L +G + L+ E L+ E+ + I +
Sbjct: 29 ELLSSEKAYVEXLQHLNLDFHGAVXRALDDXDHEGRDTLAREELRQGLSELPAIHDLHQG 88
Query: 651 FLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLH 710
L+ L E L N ++ + ++ + F ++ H + + S + LH
Sbjct: 89 ILEELEERLSN------WESQQKVADVFLAREQGFDHHATHILQFDRYLGLLS--ENCLH 140
Query: 711 PNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHL 770
A++EF S Q S T + L++ +QR+ +Y +LL N P E+ +
Sbjct: 141 SPRLAAAVREFEQSV---QGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNT 197
Query: 771 VGVVCLIS 778
G + LIS
Sbjct: 198 QGALSLIS 205
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 355 ILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMV 414
I++ V ++++ + GFSV + L +VS+VE+ S A GL GD+I
Sbjct: 10 IIHSVRVEKSPAGRL-GFSVRGG------SEHGLGIFVSKVEEGSSAERAGLCVGDKITE 62
Query: 415 INGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEP 449
+NG + M VL L MM+R + P
Sbjct: 63 VNGLSLESTTMGSAVKVLTSSSRLHMMVRRMGSGP 97
>pdb|2J59|M Chain M, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|N Chain N, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|O Chain O, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|P Chain P, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|Q Chain Q, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|R Chain R, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 168
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLST 80
R WK +V L+G +L Y D RE ++ + + I V+ ++ KR +F L+T
Sbjct: 27 RPWKQMYVVLRGHSLYLYK-DKRE-QTTPSEEEQPISVNACLIDISYSETKRKNVFRLTT 84
Query: 81 AFGDAYLFQAPCQVELENWVNSIHSA 106
+ + LFQA + ++ W+ +I +
Sbjct: 85 SDCEC-LFQAEDRDDMLAWIKTIQES 109
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 34.3 bits (77), Expect = 0.51, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 353 AKILYQVELQRT-TLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDE 411
K+ + + ++++ T +GFS+ + + E+ R+ YV+ V++ +A GL GDE
Sbjct: 4 GKVTHSIHIEKSDTAADTYGFSLSS-VEEDGIRR----LYVNSVKETGLASKKGLKAGDE 58
Query: 412 IMVINGAIVSDLDMMYLESVLQEELSLCMMMRS 444
I+ IN L+ L+ L + SL +++R+
Sbjct: 59 ILEINNRAADALNSSMLKDFLSQP-SLGLLVRT 90
>pdb|2DHJ|A Chain A, Solution Structure Of The Ph Domain Of Rho Gtpase
Activating Protein 21 From Human
Length = 125
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLST 80
R WK +V L+G +L Y D RE ++ + + I V+ ++ KR +F L+T
Sbjct: 33 RPWKQMYVVLRGHSLYLYK-DKRE-QTTPSEEEQPISVNACLIDISYSETKRKNVFRLTT 90
Query: 81 AFGDAYLFQAPCQVELENWVNSIHSA 106
+ + LFQA + ++ W+ +I +
Sbjct: 91 SDCEC-LFQAEDRDDMLAWIKTIQES 115
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 367 DHMWGFSVEAE-LTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVING 417
+ +GF ++ L E++ E+ +V+RV + S A GL GD I +NG
Sbjct: 15 NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNG 66
>pdb|3PP2|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
pdb|3PP2|B Chain B, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
Length = 124
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 19 RKRGWKGYWVCLKGTTLLFYPCDSREGR-------SVDAAPKHLIIVDGAIMQPIP-EHP 70
RK+ W W L+G L F+ DS+ S + P++ + + GA + P +
Sbjct: 27 RKKHWSASWTVLEGGVLTFFK-DSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKS 85
Query: 71 KRDYIFCLSTAFGDAYLFQAPCQVELENWVNSI 103
R + L + G YL Q + + W +I
Sbjct: 86 SRKNVLELRSRDGSEYLIQHDSEAIISTWHKAI 118
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 569 RTSPTGSMANQSSLNPSRQLTDAEKLSKVIIELIETE-RTYVKNLNGLLENYLEPLKKET 627
R + G ++ LN LT AE + +I ET + ++NL G L ++++ L++E
Sbjct: 133 RMAEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRREL 192
Query: 628 FLSGAEI-------NALFGNILEIVAFQRQFLQNLVEALE 660
AEI + + N E+V + + L E L+
Sbjct: 193 IEVLAEIRVELDYPDEIETNTGEVVTRLERIKEKLTEELK 232
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 367 DHMWGFSVEAE-LTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVING 417
+ +GF ++ L E++ E +V+RV + S A GL GD I +NG
Sbjct: 15 NQTFGFEIQTYGLHHREEQRVEXVTFVARVHESSPAQLAGLTPGDTIASVNG 66
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVA-MHNGLIKGDEIMVING 417
VEL +T D GF++ +N+ Y+SRV VA H GL +GD+++ +NG
Sbjct: 9 VELPKT--DEGLGFNIMGGKEQNSP------IYISRVIPGGVADRHGGLKRGDQLLSVNG 60
Query: 418 AIV 420
V
Sbjct: 61 VSV 63
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 367 DHMWGFSVEA-ELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVING 417
+ +GF ++ L E++ E+ +V RV + S A GL GD I +NG
Sbjct: 15 NQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQLAGLTPGDTIASVNG 66
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 30.8 bits (68), Expect = 7.3, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLCM 440
++S V+ S++ GL GD+I+ +NG S+LD +VL+ SL +
Sbjct: 44 FISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTI 93
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 30.8 bits (68), Expect = 7.3, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLCM 440
++S V+ S++ GL GD+I+ +NG S+LD +VL+ SL +
Sbjct: 30 FISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTI 79
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90
From Leishmania Major, Lmjf33.0312
Length = 444
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 1206 EIFKRIRKPILTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGD 1265
+I K IRK I+ + L+ ++VAE+ + ++ +E++G + + K+ ++L
Sbjct: 133 KILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMEL---- 188
Query: 1266 LLYY---GGVEWLNISDFLGKIKKG 1287
L +Y G E + D++ ++K G
Sbjct: 189 LRFYSTESGEEMTTLKDYVTRMKAG 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,271,080
Number of Sequences: 62578
Number of extensions: 1708200
Number of successful extensions: 3610
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3477
Number of HSP's gapped (non-prelim): 107
length of query: 1613
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1501
effective length of database: 7,964,601
effective search space: 11954866101
effective search space used: 11954866101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)