Query psy8107
Match_columns 1613
No_of_seqs 861 out of 2927
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 18:40:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3659|consensus 100.0 3.7E-85 8E-90 779.9 18.4 452 839-1304 78-552 (629)
2 KOG3660|consensus 100.0 7.7E-83 1.7E-87 793.0 19.6 450 842-1304 33-511 (629)
3 PF00209 SNF: Sodium:neurotran 100.0 1E-77 2.2E-82 753.8 -1.7 448 841-1305 3-474 (523)
4 COG0733 Na+-dependent transpor 100.0 2.3E-68 5E-73 629.6 14.8 413 840-1306 6-428 (439)
5 cd01255 PH_TIAM TIAM Pleckstri 100.0 5.9E-44 1.3E-48 354.8 8.3 160 1240-1401 1-160 (160)
6 KOG0932|consensus 100.0 2.3E-42 4.9E-47 401.8 5.9 185 4-193 508-712 (774)
7 cd00160 RhoGEF Guanine nucleot 99.9 1.8E-26 3.8E-31 250.9 15.4 178 594-784 1-180 (181)
8 KOG3519|consensus 99.9 8.6E-26 1.9E-30 292.2 18.6 427 276-802 104-538 (756)
9 smart00325 RhoGEF Guanine nucl 99.9 6.4E-26 1.4E-30 246.3 14.5 177 597-785 1-179 (180)
10 KOG4424|consensus 99.9 4.2E-24 9E-29 253.9 16.9 192 591-803 64-262 (623)
11 cd01230 PH_EFA6 EFA6 Pleckstri 99.9 8.9E-24 1.9E-28 213.5 13.1 106 4-109 2-113 (117)
12 cd01818 TIAM1_RBD Ubiquitin do 99.9 1.8E-24 4E-29 195.4 7.1 76 276-354 1-77 (77)
13 PF15410 PH_9: Pleckstrin homo 99.9 8.4E-24 1.8E-28 215.9 9.8 105 4-108 2-119 (119)
14 PF00621 RhoGEF: RhoGEF domain 99.9 2.1E-23 4.6E-28 225.2 12.9 175 597-784 1-178 (180)
15 KOG2996|consensus 99.9 4.8E-22 1E-26 233.3 15.3 221 587-831 191-413 (865)
16 KOG3518|consensus 99.9 1E-21 2.2E-26 218.6 14.2 180 592-787 120-304 (521)
17 KOG4305|consensus 99.9 8.7E-22 1.9E-26 250.7 10.0 191 586-789 328-525 (1029)
18 KOG3520|consensus 99.8 6E-20 1.3E-24 234.4 20.7 188 587-786 384-579 (1167)
19 KOG3523|consensus 99.8 2.4E-19 5.2E-24 213.8 13.3 186 588-786 252-440 (695)
20 KOG2070|consensus 99.8 4.6E-18 1E-22 197.7 15.1 184 591-789 99-283 (661)
21 KOG3522|consensus 99.8 2E-18 4.4E-23 212.3 12.0 231 594-855 1-268 (925)
22 KOG3521|consensus 99.7 5.4E-17 1.2E-21 194.4 13.4 189 589-785 173-367 (846)
23 KOG0689|consensus 99.7 4.2E-17 9.1E-22 196.1 4.6 177 586-782 55-235 (448)
24 cd01253 PH_beta_spectrin Beta- 99.6 9.9E-16 2.1E-20 152.8 11.7 100 5-106 2-104 (104)
25 KOG4240|consensus 99.6 2.8E-16 6E-21 200.1 8.7 162 591-774 630-798 (1025)
26 KOG3660|consensus 99.6 6.9E-16 1.5E-20 194.5 6.5 130 764-895 419-554 (629)
27 COG5422 ROM1 RhoGEF, Guanine n 99.6 4.5E-15 9.7E-20 182.1 8.9 186 588-786 479-670 (1175)
28 KOG3531|consensus 99.5 1.3E-14 2.9E-19 177.8 6.8 182 585-771 525-707 (1036)
29 KOG3659|consensus 99.4 2.5E-14 5.4E-19 173.8 3.1 110 767-876 464-576 (629)
30 cd01260 PH_CNK Connector enhan 99.4 5.5E-13 1.2E-17 131.2 11.0 95 4-106 2-96 (96)
31 PF00595 PDZ: PDZ domain (Also 99.3 9.3E-12 2E-16 118.5 11.3 80 358-443 1-81 (81)
32 cd01760 RBD Ubiquitin-like dom 99.3 4.1E-12 9E-17 117.8 6.6 72 276-354 1-72 (72)
33 cd01233 Unc104 Unc-104 pleckst 99.3 1.8E-11 4E-16 121.6 11.3 93 4-108 4-99 (100)
34 PF00209 SNF: Sodium:neurotran 99.3 1.3E-12 2.7E-17 165.7 2.6 125 752-876 370-497 (523)
35 cd01246 PH_oxysterol_bp Oxyste 99.2 4.9E-11 1.1E-15 115.3 11.8 91 4-106 1-91 (91)
36 KOG3606|consensus 99.2 6.1E-11 1.3E-15 130.7 12.4 103 349-452 152-260 (358)
37 cd01250 PH_centaurin Centaurin 99.2 8.8E-11 1.9E-15 114.2 11.4 93 4-105 1-93 (94)
38 KOG3524|consensus 99.2 6.5E-11 1.4E-15 144.1 10.8 195 590-808 381-586 (850)
39 cd01252 PH_cytohesin Cytohesin 99.2 2.4E-10 5.1E-15 118.2 12.3 94 4-109 2-115 (125)
40 cd01238 PH_Tec Tec pleckstrin 99.1 2.1E-10 4.6E-15 115.2 11.3 97 4-105 2-105 (106)
41 PF00169 PH: PH domain; Inter 99.1 2.3E-10 5E-15 111.6 11.4 96 4-107 3-103 (104)
42 cd01265 PH_PARIS-1 PARIS-1 ple 99.1 3.8E-10 8.2E-15 111.2 11.6 90 5-106 2-93 (95)
43 cd01264 PH_melted Melted pleck 99.1 3.7E-10 8.1E-15 111.7 11.2 95 4-106 2-100 (101)
44 cd01247 PH_GPBP Goodpasture an 99.0 1.6E-09 3.4E-14 105.9 11.6 90 4-105 1-90 (91)
45 cd01236 PH_outspread Outspread 99.0 1.4E-09 3.1E-14 108.4 11.4 94 5-104 2-101 (104)
46 cd01251 PH_centaurin_alpha Cen 99.0 1.8E-09 3.9E-14 108.0 12.0 93 5-108 2-101 (103)
47 cd01266 PH_Gab Gab (Grb2-assoc 99.0 1.4E-09 3E-14 109.7 10.4 95 5-107 2-108 (108)
48 cd01257 PH_IRS Insulin recepto 99.0 1.9E-09 4.1E-14 107.2 11.0 83 21-105 12-100 (101)
49 cd01263 PH_anillin Anillin Ple 99.0 1.8E-09 3.8E-14 110.6 9.2 99 2-106 1-122 (122)
50 cd01235 PH_SETbf Set binding f 99.0 4.5E-09 9.8E-14 104.1 11.5 91 5-107 2-101 (101)
51 PF02196 RBD: Raf-like Ras-bin 98.9 1.1E-09 2.4E-14 102.0 5.5 61 276-336 2-65 (71)
52 cd01244 PH_RasGAP_CG9209 RAS_G 98.9 6.9E-09 1.5E-13 102.6 10.6 91 7-105 5-97 (98)
53 smart00233 PH Pleckstrin homol 98.9 2E-08 4.3E-13 96.3 12.4 98 3-107 2-101 (102)
54 KOG3550|consensus 98.9 4.7E-09 1E-13 107.0 7.4 81 355-443 90-172 (207)
55 cd00992 PDZ_signaling PDZ doma 98.9 1.7E-08 3.8E-13 95.6 10.9 79 357-442 2-81 (82)
56 cd00821 PH Pleckstrin homology 98.8 5E-08 1.1E-12 92.6 10.6 95 5-106 2-96 (96)
57 cd01245 PH_RasGAP_CG5898 RAS G 98.7 4.3E-08 9.4E-13 96.8 9.8 90 5-105 2-97 (98)
58 smart00228 PDZ Domain present 98.7 9.5E-08 2.1E-12 90.8 11.5 81 357-445 3-84 (85)
59 cd00136 PDZ PDZ domain, also c 98.7 7.3E-08 1.6E-12 88.8 9.1 66 369-442 2-69 (70)
60 cd01241 PH_Akt Akt pleckstrin 98.7 1.1E-07 2.3E-12 95.2 10.8 95 4-106 3-101 (102)
61 smart00455 RBD Raf-like Ras-bi 98.6 3.3E-08 7.2E-13 91.8 3.6 44 277-320 2-45 (70)
62 cd00900 PH-like Pleckstrin hom 98.5 9E-07 2E-11 84.6 12.1 96 5-106 2-99 (99)
63 cd01237 Unc112 Unc-112 pleckst 98.5 5.7E-07 1.2E-11 89.3 10.1 86 19-108 16-104 (106)
64 KOG3553|consensus 98.5 4E-08 8.7E-13 94.1 0.9 77 369-446 36-117 (124)
65 KOG3209|consensus 98.4 5.1E-07 1.1E-11 110.7 9.1 85 354-446 897-982 (984)
66 PF13180 PDZ_2: PDZ domain; PD 98.4 1.5E-06 3.2E-11 83.2 9.7 70 369-447 2-74 (82)
67 KOG3549|consensus 98.4 1.7E-06 3.6E-11 99.0 11.5 106 339-451 32-145 (505)
68 cd00988 PDZ_CTP_protease PDZ d 98.4 1.4E-06 3E-11 83.4 9.2 69 368-445 2-72 (85)
69 KOG0517|consensus 98.4 1.1E-08 2.5E-13 134.0 -7.3 103 4-108 2301-2410(2473)
70 KOG3209|consensus 98.3 1.8E-06 3.9E-11 106.1 10.6 89 354-450 648-740 (984)
71 cd01219 PH_FGD FGD (faciogenit 98.3 5.5E-06 1.2E-10 82.8 11.5 97 4-108 4-100 (101)
72 KOG3542|consensus 98.3 1.1E-06 2.3E-11 106.7 6.6 86 354-445 534-619 (1283)
73 PF15409 PH_8: Pleckstrin homo 98.1 1.3E-05 2.8E-10 77.8 9.8 86 6-106 1-88 (89)
74 cd01254 PH_PLD Phospholipase D 98.1 1.4E-05 3.1E-10 82.4 10.5 78 22-106 32-121 (121)
75 KOG4407|consensus 98.1 2.7E-07 5.8E-12 118.2 -2.7 108 1-109 928-1043(1973)
76 cd01256 PH_dynamin Dynamin ple 98.1 1.8E-05 3.8E-10 76.7 9.8 94 4-106 3-104 (110)
77 cd00991 PDZ_archaeal_metallopr 98.1 1.1E-05 2.4E-10 76.8 8.2 57 388-446 10-69 (79)
78 cd00990 PDZ_glycyl_aminopeptid 98.1 1.3E-05 2.9E-10 75.9 8.3 56 389-446 13-68 (80)
79 KOG0930|consensus 98.0 2.4E-05 5.1E-10 87.8 9.9 96 3-109 261-377 (395)
80 cd00989 PDZ_metalloprotease PD 98.0 2.2E-05 4.8E-10 74.0 8.2 56 389-446 13-70 (79)
81 cd01220 PH_CDEP Chondrocyte-de 97.8 0.00012 2.6E-09 72.9 10.3 95 4-108 4-98 (99)
82 KOG3551|consensus 97.8 5.1E-05 1.1E-09 88.5 8.1 87 357-450 86-174 (506)
83 cd00987 PDZ_serine_protease PD 97.8 9.1E-05 2E-09 71.4 8.3 57 388-446 24-83 (90)
84 cd00986 PDZ_LON_protease PDZ d 97.7 8.8E-05 1.9E-09 70.4 7.9 56 388-446 8-66 (79)
85 PF15413 PH_11: Pleckstrin hom 97.7 9.8E-05 2.1E-09 75.3 8.3 97 4-106 1-112 (112)
86 PLN00049 carboxyl-terminal pro 97.7 0.00011 2.3E-09 90.5 10.1 76 367-445 84-161 (389)
87 TIGR00225 prc C-terminal pepti 97.7 9.2E-05 2E-09 89.4 9.2 70 368-446 51-122 (334)
88 KOG3651|consensus 97.7 0.00011 2.3E-09 83.3 8.9 81 356-443 5-87 (429)
89 KOG1892|consensus 97.7 0.00019 4.1E-09 90.8 11.1 87 356-448 934-1022(1629)
90 cd01243 PH_MRCK MRCK (myotonic 97.7 0.00037 8E-09 70.6 10.9 101 3-106 3-118 (122)
91 KOG3580|consensus 97.6 0.00021 4.5E-09 86.8 10.3 86 357-448 10-100 (1027)
92 COG0793 Prc Periplasmic protea 97.6 0.0001 2.2E-09 90.9 7.5 73 366-446 98-172 (406)
93 KOG4269|consensus 97.6 0.00025 5.5E-09 89.9 10.8 183 589-785 328-535 (1112)
94 cd01231 PH_Lnk LNK-family Plec 97.6 0.00024 5.2E-09 69.3 7.9 85 17-105 15-106 (107)
95 TIGR01713 typeII_sec_gspC gene 97.5 0.00026 5.7E-09 82.3 8.2 60 388-447 191-251 (259)
96 cd01242 PH_ROK Rok (Rho- assoc 97.4 0.0014 3E-08 65.6 11.1 96 4-105 2-108 (112)
97 KOG3580|consensus 97.4 0.0011 2.5E-08 80.7 12.1 84 351-447 195-280 (1027)
98 COG0733 Na+-dependent transpor 97.4 6.7E-05 1.5E-09 91.5 1.8 111 751-862 322-433 (439)
99 cd01817 RGS12_RBD Ubiquitin do 97.3 0.00027 5.9E-09 65.7 4.1 39 277-315 2-40 (73)
100 KOG3552|consensus 97.2 0.00027 5.9E-09 89.7 5.0 75 356-444 56-131 (1298)
101 PRK11186 carboxy-terminal prot 97.2 0.00046 9.9E-09 89.4 7.1 69 368-445 244-320 (667)
102 TIGR00054 RIP metalloprotease 97.1 0.00083 1.8E-08 83.7 7.8 56 389-446 204-261 (420)
103 TIGR02037 degP_htrA_DO peripla 97.0 0.0008 1.7E-08 84.1 6.7 58 388-447 257-317 (428)
104 PF04495 GRASP55_65: GRASP55/6 97.0 0.0033 7.1E-08 66.5 10.1 86 355-445 10-101 (138)
105 PRK10898 serine endoprotease; 97.0 0.00097 2.1E-08 81.2 7.1 57 388-446 279-338 (353)
106 KOG0606|consensus 97.0 0.0011 2.5E-08 86.8 7.7 82 357-442 628-713 (1205)
107 PRK10942 serine endoprotease; 97.0 0.0013 2.8E-08 83.0 8.1 58 388-447 408-466 (473)
108 TIGR02038 protease_degS peripl 97.0 0.00093 2E-08 81.4 6.6 57 388-446 278-337 (351)
109 PRK10779 zinc metallopeptidase 97.0 0.0013 2.7E-08 82.8 7.9 56 389-446 222-279 (449)
110 TIGR02037 degP_htrA_DO peripla 97.0 0.0014 3E-08 81.9 8.2 58 388-447 362-422 (428)
111 PRK10139 serine endoprotease; 97.0 0.0015 3.2E-08 82.2 8.3 57 388-446 290-349 (455)
112 PRK10139 serine endoprotease; 97.0 0.0016 3.4E-08 81.9 8.0 58 388-447 390-448 (455)
113 cd01249 PH_oligophrenin Oligop 97.0 0.0043 9.3E-08 62.0 9.3 96 5-104 2-102 (104)
114 cd01259 PH_Apbb1ip Apbb1ip (Am 96.9 0.0025 5.4E-08 64.0 7.3 96 3-106 1-107 (114)
115 PRK10942 serine endoprotease; 96.9 0.0015 3.3E-08 82.4 7.1 58 388-447 311-371 (473)
116 cd01258 PH_syntrophin Syntroph 96.9 0.0034 7.3E-08 63.3 7.8 97 6-104 3-106 (108)
117 KOG0609|consensus 96.9 0.0027 5.8E-08 78.3 8.5 84 353-445 120-205 (542)
118 PRK10779 zinc metallopeptidase 96.8 0.0015 3.2E-08 82.1 6.4 57 390-448 128-187 (449)
119 KOG3640|consensus 96.7 0.0017 3.6E-08 83.4 5.3 101 2-108 990-1107(1116)
120 KOG2059|consensus 96.5 0.0031 6.8E-08 79.2 5.5 98 4-109 566-666 (800)
121 TIGR03279 cyano_FeS_chp putati 96.4 0.0041 8.9E-08 76.4 6.3 49 392-443 2-50 (433)
122 PTZ00267 NIMA-related protein 96.4 0.0062 1.4E-07 77.2 7.9 87 21-107 390-476 (478)
123 KOG3605|consensus 96.4 0.003 6.4E-08 78.4 4.4 79 349-441 731-810 (829)
124 cd01261 PH_SOS Son of Sevenles 96.4 0.023 5E-07 58.0 10.1 89 20-108 17-110 (112)
125 cd01816 Raf_RBD Ubiquitin doma 96.3 0.0045 9.7E-08 57.5 4.2 70 277-351 2-71 (74)
126 KOG3129|consensus 96.2 0.0094 2E-07 65.6 6.7 61 388-448 139-202 (231)
127 cd01234 PH_CADPS CADPS (Ca2+-d 96.1 0.01 2.2E-07 58.6 5.6 97 4-107 4-110 (117)
128 TIGR00054 RIP metalloprotease 95.9 0.0098 2.1E-07 74.3 5.9 56 390-447 130-186 (420)
129 cd01218 PH_phafin2 Phafin2 Pl 95.8 0.071 1.5E-06 53.9 10.6 85 21-109 16-100 (104)
130 KOG1738|consensus 95.5 0.075 1.6E-06 67.0 11.1 77 359-443 204-282 (638)
131 PTZ00283 serine/threonine prot 95.4 0.021 4.6E-07 72.9 6.6 46 63-108 443-490 (496)
132 TIGR02860 spore_IV_B stage IV 95.3 0.064 1.4E-06 65.8 9.8 49 397-447 122-172 (402)
133 KOG0690|consensus 95.3 0.033 7.2E-07 65.0 6.7 98 4-109 17-118 (516)
134 PRK09681 putative type II secr 94.9 0.037 8.1E-07 64.7 5.8 48 401-448 220-268 (276)
135 KOG3524|consensus 94.8 0.065 1.4E-06 67.7 7.9 153 588-764 389-548 (850)
136 cd01221 PH_ephexin Ephexin Ple 94.8 0.12 2.5E-06 53.8 8.3 104 1-104 2-119 (125)
137 COG3975 Predicted protease wit 94.6 0.06 1.3E-06 66.8 6.9 44 366-418 449-492 (558)
138 KOG3571|consensus 94.3 0.11 2.4E-06 63.6 8.0 73 367-443 260-337 (626)
139 PF03845 Spore_permease: Spore 94.2 0.57 1.2E-05 56.4 13.9 195 885-1135 39-235 (320)
140 PF11470 TUG-UBL1: GLUT4 regul 94.0 0.054 1.2E-06 50.0 3.7 43 279-321 1-43 (65)
141 KOG3751|consensus 93.9 0.11 2.3E-06 64.1 6.8 98 1-106 316-423 (622)
142 KOG3531|consensus 93.8 0.025 5.3E-07 72.4 1.4 92 5-108 927-1020(1036)
143 PRK11375 allantoin permease; P 93.4 3.1 6.8E-05 53.2 19.1 49 1006-1054 159-207 (484)
144 TIGR00837 araaP aromatic amino 92.8 1.5 3.2E-05 54.1 14.6 176 1016-1208 125-301 (381)
145 cd01239 PH_PKD Protein kinase 92.8 0.36 7.8E-06 49.2 7.3 91 4-106 2-117 (117)
146 TIGR00814 stp serine transport 92.7 1.1 2.4E-05 55.8 13.4 64 1074-1138 186-254 (397)
147 KOG0521|consensus 92.7 0.12 2.7E-06 68.6 5.2 86 19-111 287-372 (785)
148 TIGR00912 2A0309 spore germina 92.7 1.3 2.9E-05 54.0 13.9 113 1015-1134 125-238 (359)
149 COG0265 DegQ Trypsin-like seri 92.6 0.2 4.4E-06 61.0 6.8 58 388-447 270-330 (347)
150 COG3031 PulC Type II secretory 92.4 0.29 6.2E-06 55.4 6.8 54 395-448 214-268 (275)
151 KOG3605|consensus 92.2 0.18 3.8E-06 63.5 5.3 94 346-444 634-733 (829)
152 PF01235 Na_Ala_symp: Sodium:a 92.0 1.7 3.7E-05 54.2 13.6 171 1013-1203 147-338 (416)
153 KOG3723|consensus 91.9 0.068 1.5E-06 65.9 1.4 98 4-109 737-838 (851)
154 KOG1090|consensus 91.9 0.12 2.6E-06 67.1 3.4 91 4-106 1636-1730(1732)
155 COG1953 FUI1 Cytosine/uracil/t 91.8 2.6 5.6E-05 53.2 14.8 54 1003-1056 169-222 (497)
156 PF14685 Tricorn_PDZ: Tricorn 91.8 0.94 2E-05 44.5 8.8 56 389-446 13-80 (88)
157 KOG3523|consensus 91.7 0.24 5.3E-06 62.1 5.7 104 1-104 474-591 (695)
158 KOG3938|consensus 90.4 1.7 3.7E-05 49.9 10.2 130 288-442 66-207 (334)
159 TIGR00930 2a30 K-Cl cotranspor 89.6 4.2 9.2E-05 56.1 15.2 113 1012-1127 210-333 (953)
160 PF03222 Trp_Tyr_perm: Tryptop 89.4 6.7 0.00015 49.0 15.6 126 1072-1208 182-307 (394)
161 cd01777 SNX27_RA Ubiquitin dom 89.1 0.46 1E-05 46.2 4.0 40 275-314 2-41 (87)
162 PRK00701 manganese transport p 88.9 8.9 0.00019 48.6 16.3 23 1172-1194 305-327 (439)
163 KOG1320|consensus 88.7 0.75 1.6E-05 57.6 6.6 54 389-444 399-455 (473)
164 TIGR00909 2A0306 amino acid tr 88.3 7.4 0.00016 48.7 15.2 158 1013-1196 141-299 (429)
165 cd01220 PH_CDEP Chondrocyte-de 88.0 2 4.3E-05 43.2 7.8 60 1328-1396 39-98 (99)
166 TIGR00905 2A0302 transporter, 87.3 6.3 0.00014 50.2 13.8 107 1015-1128 139-252 (473)
167 KOG1738|consensus 86.8 0.11 2.5E-06 65.4 -2.0 69 4-80 564-632 (638)
168 PF01566 Nramp: Natural resist 86.7 23 0.00051 43.5 17.8 47 1163-1210 242-289 (358)
169 cd01226 PH_exo84 Exocyst compl 86.6 1.7 3.8E-05 43.6 6.4 56 51-107 43-98 (100)
170 cd01225 PH_Cool_Pix Cool (clon 86.3 3 6.6E-05 42.5 8.0 80 22-105 28-107 (111)
171 KOG3519|consensus 86.2 0.23 4.9E-06 66.5 0.1 109 1295-1403 582-690 (756)
172 TIGR00835 agcS amino acid carr 86.0 9.1 0.0002 48.1 13.8 109 1079-1204 251-366 (425)
173 PF15406 PH_6: Pleckstrin homo 84.9 1.9 4E-05 43.7 5.6 69 26-104 42-110 (112)
174 cd01232 PH_TRIO Trio pleckstri 83.9 3.5 7.6E-05 42.5 7.4 64 1328-1397 51-114 (114)
175 cd01222 PH_clg Clg (common-sit 83.7 4.4 9.5E-05 40.7 7.8 61 1329-1397 37-97 (97)
176 PF14593 PH_3: PH domain; PDB: 83.7 3.1 6.7E-05 42.2 6.8 74 23-108 27-100 (104)
177 PRK10483 tryptophan permease; 82.8 21 0.00045 45.0 14.9 125 1074-1210 192-317 (414)
178 COG3480 SdrC Predicted secrete 82.6 3.2 7E-05 49.2 7.3 61 388-451 130-193 (342)
179 smart00295 B41 Band 4.1 homolo 82.4 3 6.4E-05 46.5 6.9 49 275-324 4-52 (207)
180 PRK10435 cadB lysine/cadaverin 81.8 21 0.00046 44.9 14.9 121 1006-1133 123-246 (435)
181 PLN02866 phospholipase D 81.8 5 0.00011 54.6 9.5 81 21-108 216-308 (1068)
182 cd01224 PH_Collybistin Collybi 81.7 8.3 0.00018 39.5 8.9 82 22-105 16-105 (109)
183 PRK10655 potE putrescine trans 81.6 20 0.00044 45.1 14.6 54 1074-1128 189-243 (438)
184 TIGR00911 2A0308 L-type amino 81.5 22 0.00049 45.6 15.2 116 1013-1131 173-292 (501)
185 cd01261 PH_SOS Son of Sevenles 80.0 8.6 0.00019 39.6 8.5 79 1301-1396 31-110 (112)
186 PF15408 PH_7: Pleckstrin homo 79.9 0.77 1.7E-05 44.1 0.9 95 5-108 1-98 (104)
187 cd01232 PH_TRIO Trio pleckstri 79.9 8.5 0.00018 39.8 8.5 83 24-106 25-111 (114)
188 PF13520 AA_permease_2: Amino 79.8 31 0.00067 43.0 15.3 121 1007-1131 120-243 (426)
189 COG0531 PotE Amino acid transp 79.7 23 0.0005 44.4 14.3 108 1004-1115 133-242 (466)
190 TIGR00907 2A0304 amino acid pe 79.6 27 0.00059 44.5 15.0 37 878-915 48-85 (482)
191 TIGR03810 arg_ornith_anti argi 79.4 22 0.00048 45.3 14.0 38 1075-1113 196-233 (468)
192 cd01222 PH_clg Clg (common-sit 79.0 12 0.00026 37.6 8.9 75 26-107 19-95 (97)
193 PF09379 FERM_N: FERM N-termin 78.1 1.8 4E-05 41.0 2.9 41 279-319 1-42 (80)
194 cd01223 PH_Vav Vav pleckstrin 78.0 11 0.00024 39.0 8.4 85 24-108 21-112 (116)
195 cd00196 UBQ Ubiquitin-like pro 77.9 2.1 4.5E-05 36.5 3.0 44 278-321 1-44 (69)
196 KOG3834|consensus 77.6 5.8 0.00013 48.7 7.4 90 349-445 68-167 (462)
197 PRK10249 phenylalanine transpo 77.3 30 0.00064 44.0 14.2 105 1013-1119 143-254 (458)
198 PRK15049 L-asparagine permease 77.2 22 0.00048 45.7 13.2 97 1013-1112 152-258 (499)
199 PLN00188 enhanced disease resi 77.0 7.3 0.00016 51.1 8.6 101 2-108 4-110 (719)
200 PRK11357 frlA putative fructos 76.8 30 0.00066 43.6 14.1 58 1073-1131 194-252 (445)
201 PF00788 RA: Ras association ( 76.6 3.5 7.6E-05 40.0 4.5 44 275-318 3-52 (93)
202 PF02133 Transp_cyt_pur: Perme 76.4 27 0.00059 44.0 13.5 52 1004-1055 136-187 (440)
203 COG3949 Uncharacterized membra 76.2 31 0.00068 41.8 12.7 74 1059-1134 165-238 (349)
204 TIGR00910 2A0307_GadC glutamat 75.8 23 0.0005 45.7 12.8 113 1007-1126 126-246 (507)
205 cd01218 PH_phafin2 Phafin2 Pl 75.2 13 0.00028 37.8 8.1 63 1329-1400 41-103 (104)
206 PRK15433 branched-chain amino 75.0 75 0.0016 40.4 16.3 47 1161-1207 265-311 (439)
207 KOG1117|consensus 74.1 7.1 0.00015 51.3 7.2 78 23-106 518-600 (1186)
208 PRK11049 D-alanine/D-serine/gl 74.0 20 0.00043 45.7 11.5 38 1074-1112 211-249 (469)
209 KOG1421|consensus 73.9 5 0.00011 51.5 5.8 59 390-451 305-365 (955)
210 PF15404 PH_4: Pleckstrin homo 72.7 15 0.00032 41.2 8.4 33 4-41 1-33 (185)
211 cd01227 PH_Dbs Dbs (DBL's big 72.4 12 0.00026 39.7 7.3 62 1328-1398 57-118 (133)
212 TIGR00906 2A0303 cationic amin 71.7 1E+02 0.0022 40.4 17.4 113 1015-1130 171-287 (557)
213 TIGR03813 put_Glu_GABA_T putat 71.7 47 0.001 42.4 14.0 116 1008-1130 127-250 (474)
214 TIGR00800 ncs1 NCS1 nucleoside 71.6 1.3E+02 0.0027 38.3 17.7 36 1074-1110 207-243 (442)
215 PRK11387 S-methylmethionine tr 71.2 42 0.0009 42.8 13.4 41 1074-1115 206-247 (471)
216 PRK10644 arginine:agmatin anti 70.9 54 0.0012 41.4 14.2 115 1008-1130 129-247 (445)
217 cd01219 PH_FGD FGD (faciogenit 70.7 15 0.00033 36.8 7.4 57 1330-1396 44-100 (101)
218 TIGR00796 livcs branched-chain 70.3 96 0.0021 38.7 15.7 179 1004-1206 110-300 (378)
219 cd01240 PH_beta-ARK Beta adren 69.7 7.2 0.00016 39.6 4.7 79 22-108 19-99 (116)
220 PF02185 HR1: Hr1 repeat; Int 69.6 4.5 9.7E-05 37.9 3.2 56 129-184 4-61 (70)
221 PRK09664 tryptophan permease T 69.1 1.1E+02 0.0024 38.6 16.0 123 1076-1210 195-318 (415)
222 COG1914 MntH Mn2+ and Fe2+ tra 68.9 1.1E+02 0.0024 38.6 15.9 87 840-932 11-100 (416)
223 PF00324 AA_permease: Amino ac 68.4 10 0.00022 48.4 7.0 113 1011-1124 123-250 (478)
224 PF02028 BCCT: BCCT family tra 67.5 4.3 9.3E-05 51.9 3.4 109 1086-1204 314-423 (485)
225 cd01787 GRB7_RA RA (RAS-associ 65.8 6.5 0.00014 38.4 3.5 42 276-317 4-45 (85)
226 KOG3532|consensus 65.0 10 0.00022 48.6 5.8 43 390-434 400-442 (1051)
227 COG0750 Predicted membrane-ass 64.9 11 0.00025 46.2 6.4 54 391-444 132-188 (375)
228 PRK09928 choline transport pro 62.7 36 0.00079 45.2 10.4 61 1054-1114 115-182 (679)
229 TIGR00913 2A0310 amino acid pe 62.6 1.2E+02 0.0026 38.6 15.2 36 878-913 37-73 (478)
230 PRK15132 tyrosine transporter 62.0 1.2E+02 0.0026 38.2 14.5 120 1076-1207 183-303 (403)
231 smart00314 RA Ras association 59.8 14 0.00031 36.0 4.8 44 277-320 5-53 (90)
232 COG1457 CodB Purine-cytosine p 59.4 4.4E+02 0.0096 33.7 18.6 48 1073-1123 192-240 (442)
233 PF12812 PDZ_1: PDZ-like domai 58.9 9.1 0.0002 36.9 3.1 42 390-434 33-74 (78)
234 PRK11017 codB cytosine permeas 58.5 3.3E+02 0.0072 34.2 17.6 38 1179-1216 260-297 (404)
235 KOG1264|consensus 58.4 22 0.00047 46.8 7.0 57 53-109 853-912 (1267)
236 TIGR02358 thia_cytX probable h 57.6 1.8E+02 0.0039 36.3 15.0 39 1181-1219 251-290 (386)
237 PF00169 PH: PH domain; Inter 57.0 35 0.00076 32.6 7.0 85 1289-1395 15-103 (104)
238 PRK15419 proline:sodium sympor 56.8 90 0.0019 40.3 12.6 42 1161-1204 313-355 (502)
239 TIGR00927 2A1904 K+-dependent 56.5 23 0.00049 48.1 7.0 56 843-905 905-960 (1096)
240 cd01768 RA RA (Ras-associating 55.9 25 0.00054 34.0 5.7 41 277-317 2-46 (87)
241 smart00233 PH Pleckstrin homol 54.7 32 0.0007 32.2 6.3 59 1330-1395 42-101 (102)
242 COG0814 SdaC Amino acid permea 53.5 3E+02 0.0066 34.8 16.2 64 1072-1136 191-256 (415)
243 cd01224 PH_Collybistin Collybi 53.4 58 0.0013 33.5 7.9 59 1328-1392 41-104 (109)
244 PRK10580 proY putative proline 53.2 3.1E+02 0.0067 34.9 16.4 38 1074-1112 199-237 (457)
245 TIGR01773 GABAperm gamma-amino 53.0 3.7E+02 0.0079 34.1 17.0 38 1074-1112 201-239 (452)
246 TIGR03428 ureacarb_perm permea 52.7 4.7E+02 0.01 33.4 18.0 107 1011-1120 150-259 (475)
247 KOG4424|consensus 52.3 27 0.00059 44.6 6.4 83 24-109 289-371 (623)
248 PF15405 PH_5: Pleckstrin homo 52.2 42 0.00092 35.7 7.1 98 4-106 3-134 (135)
249 PRK09928 choline transport pro 52.2 9.5 0.00021 50.3 2.7 84 1115-1201 353-437 (679)
250 PRK10197 gamma-aminobutyrate t 52.0 2.5E+02 0.0053 35.7 15.2 42 1074-1116 181-223 (446)
251 TIGR00842 bcct choline/carniti 51.5 15 0.00033 46.6 4.2 83 1116-1201 300-384 (453)
252 PRK15238 inner membrane transp 51.3 81 0.0018 40.6 10.9 52 1073-1125 210-262 (496)
253 PRK10746 putative transport pr 48.5 2.2E+02 0.0049 36.3 14.1 40 1073-1113 199-239 (461)
254 PRK11021 putative transporter; 47.3 4.6E+02 0.01 32.7 16.5 54 1072-1126 175-229 (410)
255 PF05297 Herpes_LMP1: Herpesvi 47.3 6.3 0.00014 45.9 0.0 16 1292-1307 141-156 (381)
256 cd01228 PH_BCR-related BCR (br 47.1 62 0.0013 32.5 6.7 71 27-105 21-92 (96)
257 KOG2921|consensus 45.8 17 0.00037 44.4 3.2 43 389-434 221-265 (484)
258 KOG3834|consensus 45.5 31 0.00067 42.8 5.3 58 388-446 15-74 (462)
259 PF05297 Herpes_LMP1: Herpesvi 45.3 7 0.00015 45.5 0.0 14 1172-1185 134-147 (381)
260 PF05525 Branch_AA_trans: Bran 45.1 1.4E+02 0.003 37.9 11.1 46 1170-1216 270-315 (427)
261 KOG0248|consensus 44.6 19 0.00042 46.4 3.6 81 20-109 262-343 (936)
262 PF15411 PH_10: Pleckstrin hom 44.2 89 0.0019 32.5 7.8 82 21-103 19-116 (116)
263 TIGR00908 2A0305 ethanolamine 44.1 3.1E+02 0.0068 34.5 14.4 42 1074-1116 191-233 (442)
264 KOG0792|consensus 43.2 11 0.00024 50.9 1.3 68 367-435 715-797 (1144)
265 cd01228 PH_BCR-related BCR (br 43.1 38 0.00082 33.9 4.6 51 1328-1394 43-93 (96)
266 KOG1739|consensus 42.6 34 0.00073 42.8 5.0 80 21-108 38-117 (611)
267 PTZ00206 amino acid transporte 42.0 1.5E+02 0.0032 38.1 11.0 28 923-950 139-166 (467)
268 TIGR00813 sss transporter, SSS 42.0 2.2E+02 0.0048 35.5 12.5 44 1160-1204 281-324 (407)
269 PF00474 SSF: Sodium:solute sy 40.5 40 0.00087 42.0 5.6 44 1161-1205 280-323 (406)
270 KOG1451|consensus 40.5 64 0.0014 41.4 7.0 99 4-106 267-366 (812)
271 PF11976 Rad60-SLD: Ubiquitin- 40.3 26 0.00056 32.6 2.9 38 276-313 2-39 (72)
272 TIGR02119 panF sodium/pantothe 38.3 1.2E+02 0.0026 38.7 9.5 43 1161-1204 306-348 (471)
273 COG1114 BrnQ Branched-chain am 38.0 8.4E+02 0.018 31.0 15.8 181 1005-1206 120-308 (431)
274 KOG4371|consensus 37.7 44 0.00095 45.4 5.3 78 356-444 1148-1226(1332)
275 KOG0193|consensus 37.2 81 0.0018 41.1 7.3 41 274-314 96-136 (678)
276 cd01763 Sumo Small ubiquitin-r 37.2 53 0.0012 32.1 4.7 39 275-313 12-50 (87)
277 cd01227 PH_Dbs Dbs (DBL's big 37.1 1.4E+02 0.003 31.9 8.0 82 24-108 30-116 (133)
278 KOG1289|consensus 36.4 2.6E+02 0.0057 36.3 11.6 43 1267-1309 439-481 (550)
279 PRK09950 putative transporter; 36.2 21 0.00045 46.0 2.2 85 1115-1202 345-431 (506)
280 PRK12488 acetate permease; Pro 35.9 2.9E+02 0.0063 36.2 12.5 32 923-954 145-176 (549)
281 PRK03356 L-carnitine/gamma-but 35.5 31 0.00067 44.5 3.5 85 1116-1203 349-435 (504)
282 cd00089 HR1 Protein kinase C-r 35.1 63 0.0014 30.5 4.7 60 124-183 7-69 (72)
283 PF11874 DUF3394: Domain of un 34.9 55 0.0012 36.7 4.8 38 370-416 113-150 (183)
284 TIGR01197 nramp NRAMP (natural 34.3 1E+03 0.023 29.9 17.7 26 1172-1197 291-316 (390)
285 COG1115 AlsT Na+/alanine sympo 34.1 7.4E+02 0.016 31.8 14.7 108 793-907 7-123 (452)
286 KOG3676|consensus 33.7 3.3E+02 0.0071 36.9 12.0 25 1005-1030 507-531 (782)
287 PF07497 Rho_RNA_bind: Rho ter 33.2 34 0.00073 33.2 2.5 39 368-413 12-50 (78)
288 PF02990 EMP70: Endomembrane p 31.7 5.1E+02 0.011 33.8 13.6 27 933-960 304-330 (521)
289 cd01806 Nedd8 Nebb8-like ubiq 31.6 76 0.0017 29.5 4.7 42 276-317 2-43 (76)
290 smart00742 Hr1 Rho effector or 31.4 68 0.0015 29.0 4.0 52 130-181 5-57 (57)
291 PRK10238 aromatic amino acid t 30.7 6.5E+02 0.014 32.0 14.3 98 1013-1112 134-238 (456)
292 PRK09395 actP acetate permease 30.6 3E+02 0.0065 36.1 11.4 14 1014-1027 192-205 (551)
293 cd01251 PH_centaurin_alpha Cen 30.4 57 0.0012 32.9 3.8 27 1370-1396 75-101 (103)
294 cd01807 GDX_N ubiquitin-like d 30.0 68 0.0015 30.1 4.0 42 276-317 2-43 (74)
295 PRK03356 L-carnitine/gamma-but 30.0 3.7E+02 0.008 35.0 11.7 77 1031-1112 90-175 (504)
296 PF12814 Mcp5_PH: Meiotic cell 29.9 4.6E+02 0.01 27.4 10.5 84 22-107 29-121 (123)
297 TIGR02121 Na_Pro_sym sodium/pr 28.1 2E+02 0.0044 37.0 9.1 43 1161-1204 306-348 (487)
298 PRK09950 putative transporter; 27.7 4.2E+02 0.0092 34.5 11.6 72 1031-1107 88-167 (506)
299 cd01245 PH_RasGAP_CG5898 RAS G 26.0 1.3E+02 0.0029 30.4 5.4 52 1335-1393 46-97 (98)
300 cd01262 PH_PDK1 3-Phosphoinosi 25.8 3.2E+02 0.007 27.3 7.8 73 23-107 15-88 (89)
301 COG1292 BetT Choline-glycine b 25.8 1.2E+02 0.0026 39.3 6.1 108 1086-1203 326-435 (537)
302 cd00900 PH-like Pleckstrin hom 25.2 1.8E+02 0.004 26.9 6.2 54 1334-1393 45-98 (99)
303 cd01223 PH_Vav Vav pleckstrin 25.1 1.2E+02 0.0026 31.6 5.0 59 1329-1393 46-109 (116)
304 KOG3551|consensus 23.9 59 0.0013 39.8 2.8 90 18-107 305-401 (506)
305 PF08458 PH_2: Plant pleckstri 23.9 4.3E+02 0.0092 27.5 8.5 37 71-108 68-104 (110)
306 PRK10263 DNA translocase FtsK; 23.7 1.9E+02 0.0041 41.4 7.8 6 877-882 68-73 (1355)
307 KOG4407|consensus 23.7 40 0.00086 46.7 1.5 54 389-442 144-198 (1973)
308 PF00789 UBX: UBX domain; Int 23.3 1.1E+02 0.0025 29.1 4.3 33 272-304 4-36 (82)
309 PRK09442 panF sodium/panthothe 22.7 2E+02 0.0043 37.0 7.6 41 1161-1202 307-347 (483)
310 KOG3549|consensus 22.6 93 0.002 37.6 4.1 103 4-109 283-388 (505)
311 cd01798 parkin_N amino-termina 22.6 96 0.0021 28.7 3.5 40 278-317 2-41 (70)
312 KOG3784|consensus 22.0 99 0.0021 38.3 4.2 50 274-323 107-159 (407)
313 PRK05771 V-type ATP synthase s 21.9 7.9E+02 0.017 33.0 13.1 24 1001-1024 442-465 (646)
314 PRK10836 lysine transporter; P 21.7 1.5E+03 0.032 29.1 15.1 38 1075-1113 206-244 (489)
315 PF02028 BCCT: BCCT family tra 21.2 2.1E+02 0.0046 37.0 7.3 80 1056-1135 99-190 (485)
316 cd01794 DC_UbP_C dendritic cel 21.1 1.2E+02 0.0026 28.5 3.8 38 278-315 2-39 (70)
317 KOG1450|consensus 20.6 94 0.002 41.0 3.9 91 18-108 268-364 (650)
318 TIGR00815 sulP high affinity s 20.6 1.7E+02 0.0037 38.5 6.5 67 1065-1133 253-319 (563)
319 KOG2466|consensus 20.3 6.1E+02 0.013 32.8 10.5 48 1005-1052 186-233 (572)
320 KOG1303|consensus 20.1 1.4E+03 0.03 29.4 14.0 36 921-956 121-156 (437)
321 KOG1286|consensus 20.0 4.7E+02 0.01 34.5 10.1 76 1022-1099 178-256 (554)
No 1
>KOG3659|consensus
Probab=100.00 E-value=3.7e-85 Score=779.92 Aligned_cols=452 Identities=40% Similarity=0.791 Sum_probs=420.3
Q ss_pred cccccccccccchhhhhHHhhhheeeeccCCCc--ccccccchhHhHHHHHhhhcchhhhHHHhhhhccCCChhhhhhhh
Q psy8107 839 GWYWQITWRFLGPAIMSCILVSSIICRFLKKPS--YSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTI 916 (1613)
Q Consensus 839 ~~yWk~cW~fItP~il~~I~i~~ii~~~~~~P~--Y~~~g~~FLIpYli~l~liGlPll~lElalGQ~~r~g~i~a~~~i 916 (1613)
...|..-|-|++..++.++.++++ |++|+ |.+|||+|++||+++++++|+||++||+++||+.|+|++++|+++
T Consensus 78 R~~W~~K~eflLa~vgfaV~lgnv----WrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri 153 (629)
T KOG3659|consen 78 RPTWGSKTEFLLAVVGFAVDLGNV----WRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRI 153 (629)
T ss_pred CCcchhHHHHHHHHHHHhhccccc----ceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHh
Confidence 568999999998888888888866 89997 889999999999999999999999999999999999999999999
Q ss_pred hhcccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcCC----------cccCCchhhhhhhh
Q psy8107 917 HPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIP----------ECELSSETAYFWYR 986 (1613)
Q Consensus 917 ~p~~~GvG~~~~li~~li~~YYsVi~aW~L~Y~~~Sf~~~lpW~~C~~~~n~~~~~----------~C~~s~~~~~f~~~ 986 (1613)
+|.++|||++++++++++.+||++|++|+++|++.||++++||++|++.||+..+. +|...+++++||++
T Consensus 154 ~P~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s~n~~~C~~~~~s~~~~~~~ek~s~a~ef~~r 233 (629)
T KOG3659|consen 154 APALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNSWNGPNCFDPTWSKNCDEECEKTSPAQEFWYR 233 (629)
T ss_pred CHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCcccCCCccCccccccCchhhhccchhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999976532 46778999999999
Q ss_pred hccccCCC--CCCCCchhHHHHHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChhccceeeec
Q psy8107 987 TTLDVSPN--IESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYT 1064 (1613)
Q Consensus 987 ~vL~~s~~--i~~~g~~~~~l~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~lf~ 1064 (1613)
.+|+++.. ++|.|++.|.+++|++++|++++++++||+|++||++|+++++|++++.++++|+++||||..|+.|+++
T Consensus 234 ~~l~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~ 313 (629)
T KOG3659|consen 234 KVLGLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLT 313 (629)
T ss_pred hcccccccccccccCCCchHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheec
Confidence 99998877 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccChhHHHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhccccccccccC
Q psy8107 1065 PKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEG 1144 (1613)
Q Consensus 1065 Pd~s~L~~~~vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~~ 1144 (1613)
|||+++.++.+|++|++|+|||||+|+|++++|||||+++|||+|||++++++|+++++++|+++|+++|+++.......
T Consensus 314 ~~~~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~y~~~ 393 (629)
T KOG3659|consen 314 PDIEKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALLTSIINCLTSFLSGFVIFSVLGYMATLIYPCN 393 (629)
T ss_pred ccHHHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998755555
Q ss_pred CCcee-cccCCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcc-cccccchhhhhHhh--
Q psy8107 1145 TGLAF-IAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIE-IFKRIRKPILTEAL-- 1220 (1613)
Q Consensus 1145 ~~i~~-~~~~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~-~~~r~~~~~~~~~l-- 1220 (1613)
.+.++ +..+||||+|++||+|+++||.+.+|+++||+||..+|++|+++.+|.+++.+.|++ ..-|+++..+++.+
T Consensus 394 ~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~s~~g~~e~iit~l~d~~~~~l~~~~e~~~~~~~l 473 (629)
T KOG3659|consen 394 EEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLDSMFGGIEAIITPLLDEFYLSLRKHRELFTLLVCL 473 (629)
T ss_pred ccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhHhhhhhHHHHhccccchhhhHhhhhHHHHHHHHHH
Confidence 56655 567899999999999999999999999999999999999999999999999999998 55566666655443
Q ss_pred ----hhhhhcchhhhHHHHHHHhhcceeeeeeeccccccceeccccCCceEEEEeEee-echhhhhhcccCCccceeeeh
Q psy8107 1221 ----KGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEW-LNISDFLGKIKKGLELHAMCF 1295 (1613)
Q Consensus 1221 ----~gL~~vt~gG~y~~~l~d~yga~f~ll~~~~~~~l~e~Ials~~~lwiyg~~~~-~~i~~mlg~~~~~~~~w~~~w 1295 (1613)
+++++++.+|.|+.+++++|++++.+++. +++|.++++ |+||.+++ .|++.|+|. +++ .+|++||
T Consensus 474 ~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~----Vlie~i~Vs----wvYG~~rf~~d~~~Mlg~-~P~-~yw~v~w 543 (629)
T KOG3659|consen 474 FSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFV----VLIEAIAVS----WVYGVRRFSADVKQMLGF-RPG-WYWRVCW 543 (629)
T ss_pred HHHhhhhhhccccceeeehhhHHHhhhhHHHHH----HHHHHHHHH----hhhhHhHHHHHHHHHhCC-CCc-hhHHHHH
Confidence 48899999999999999999988877666 899999998 99999666 599999999 666 7999999
Q ss_pred hhhhhhhee
Q psy8107 1296 VFKSAVVFL 1304 (1613)
Q Consensus 1296 ~fitPvill 1304 (1613)
..+.|++++
T Consensus 544 ~~vsp~~ll 552 (629)
T KOG3659|consen 544 PCVSPVFLL 552 (629)
T ss_pred hhhhHHHHH
Confidence 999998776
No 2
>KOG3660|consensus
Probab=100.00 E-value=7.7e-83 Score=792.98 Aligned_cols=450 Identities=40% Similarity=0.746 Sum_probs=409.7
Q ss_pred ccccccccchhhhhHHhhhheeeeccCCCc--ccccccchhHhHHHHHhhhcchhhhHHHhhhhccCCChhhhhhhhhhc
Q psy8107 842 WQITWRFLGPAIMSCILVSSIICRFLKKPS--YSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPW 919 (1613)
Q Consensus 842 Wk~cW~fItP~il~~I~i~~ii~~~~~~P~--Y~~~g~~FLIpYli~l~liGlPll~lElalGQ~~r~g~i~a~~~i~p~ 919 (1613)
+|..|+--.-.++++++......|+||+|+ |.+|||||||||+++++++|+|+++||+++||++++|++.+||+++|+
T Consensus 33 ~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pi 112 (629)
T KOG3660|consen 33 DRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPI 112 (629)
T ss_pred ccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhChH
Confidence 666666666666676666666667799995 999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcCC------cccC----------Cchhhhh
Q psy8107 920 LGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIP------ECEL----------SSETAYF 983 (1613)
Q Consensus 920 ~~GvG~~~~li~~li~~YYsVi~aW~L~Y~~~Sf~~~lpW~~C~~~~n~~~~~------~C~~----------s~~~~~f 983 (1613)
++|+|++++++++++++||++++||+++|+++||+..+||..|++.||++.+. .|.. .++...+
T Consensus 113 f~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (629)
T KOG3660|consen 113 FKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTEYCLDGTSKQNCANLTKLSNALNFNSPVAEF 192 (629)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCCccccccccccccccccccchhhhccchhhh
Confidence 99999999999999999999999999999999999999999999999964432 2321 2345677
Q ss_pred hhhhccccCCC--CCCCCchhHHHHHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChhcccee
Q psy8107 984 WYRTTLDVSPN--IESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVH 1061 (1613)
Q Consensus 984 ~~~~vL~~s~~--i~~~g~~~~~l~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~ 1061 (1613)
|.+..+..+.. ++++|.++|.+++|++++|++|+++++||+|++||++|+++++||++|++|++|++|||||.+|+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~ 272 (629)
T KOG3660|consen 193 WENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINF 272 (629)
T ss_pred hhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHH
Confidence 87777776664 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccChhHHHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhcccccccc
Q psy8107 1062 MYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNA 1141 (1613)
Q Consensus 1062 lf~Pd~s~L~~~~vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~ 1141 (1613)
|++|||++|.|+++|.||+.|+|||+|+|+|++|++||||+++||++||+++++++|+.+|+++|+++|+++||+++.
T Consensus 273 ~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~-- 350 (629)
T KOG3660|consen 273 YLTPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHE-- 350 (629)
T ss_pred HHhhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCC-CceecccCCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcccccccchhhhhHh-
Q psy8107 1142 AEGT-GLAFIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPILTEA- 1219 (1613)
Q Consensus 1142 ~~~~-~i~~~~~~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~~~r~~~~~~~~~- 1219 (1613)
.++ ++++++.+|+||+|++||+++++||.+++|++|||+|++++|++|+++++|.+++++.|+|...|.++..+++.
T Consensus 351 -~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp~~~~~~~~~vl~v 429 (629)
T KOG3660|consen 351 -QGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLDSQFAIVETIVTAIVDEFPRLRNRRWIVVLFV 429 (629)
T ss_pred -hCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccccccchhhhHHH
Confidence 355 78889999999999999999999999999999999999999999999999999999999998555555555444
Q ss_pred -----hhhhhhcchhhhHHHHHHHhhcceeeeeeeccccccceeccccCCceEEEEe-Eeeechhhhhh-cccCCcccee
Q psy8107 1220 -----LKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGG-VEWLNISDFLG-KIKKGLELHA 1292 (1613)
Q Consensus 1220 -----l~gL~~vt~gG~y~~~l~d~yga~f~ll~~~~~~~l~e~Ials~~~lwiyg~-~~~~~i~~mlg-~~~~~~~~w~ 1292 (1613)
++|+++++++|.|+++++|+|++++.+++. +++|++++. |+||. ++..|++.|+| . +.. .+|+
T Consensus 430 cv~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~----~~~e~~~i~----wiYG~~~~~~di~~M~g~~-~~~-~~~~ 499 (629)
T KOG3660|consen 430 CVVGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFI----AIFECFAIA----WVYGADRFRDDIHEMIGCG-RPS-PYWK 499 (629)
T ss_pred HHHHHHcchheecCcchhHHHHHHHHhchHHHHHH----HHHHHHHHh----heecccchHhhHHHHhCCC-CCC-HHHH
Confidence 349999999999999999999988888777 899999988 99999 55579999999 4 444 8999
Q ss_pred eehhhhhhhhee
Q psy8107 1293 MCFVFKSAVVFL 1304 (1613)
Q Consensus 1293 ~~w~fitPvill 1304 (1613)
+||.|++|++++
T Consensus 500 ~~W~f~tP~~~~ 511 (629)
T KOG3660|consen 500 LCWKFVTPILLL 511 (629)
T ss_pred HHHHHhhhHHHH
Confidence 999999997775
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=100.00 E-value=1e-77 Score=753.76 Aligned_cols=448 Identities=36% Similarity=0.727 Sum_probs=340.6
Q ss_pred cccccccccchhhhhHHhhhheeeeccCCCc--ccccccchhHhHHHHHhhhcchhhhHHHhhhhccCCChhhhhhhhhh
Q psy8107 841 YWQITWRFLGPAIMSCILVSSIICRFLKKPS--YSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHP 918 (1613)
Q Consensus 841 yWk~cW~fItP~il~~I~i~~ii~~~~~~P~--Y~~~g~~FLIpYli~l~liGlPll~lElalGQ~~r~g~i~a~~~i~p 918 (1613)
-|...+.|+..+++.+++++|+ |++|+ |.+||++|++||+++++++|+|++++|+++||++|+|++++|++++|
T Consensus 3 ~w~~~~~~~l~~~g~~vglgn~----wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p 78 (523)
T PF00209_consen 3 KWSSKIGFILACIGYAVGLGNI----WRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCP 78 (523)
T ss_dssp --S-HHHHHHHHHHHHSSHHHH----THHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHH
T ss_pred cccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4788888888888888888876 88996 77899999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcCCc------c---------cCCchhhhh
Q psy8107 919 WLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPE------C---------ELSSETAYF 983 (1613)
Q Consensus 919 ~~~GvG~~~~li~~li~~YYsVi~aW~L~Y~~~Sf~~~lpW~~C~~~~n~~~~~~------C---------~~s~~~~~f 983 (1613)
.++|+|++++++++++++||++++||+++|+++|+++++||++|+++||++.+.+ | ...++..+|
T Consensus 79 ~~~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~f 158 (523)
T PF00209_consen 79 IFKGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSWNTPNCYDIYSNCNCSNSSSYNFTQRISPAEEF 158 (523)
T ss_dssp HHHTHHHH---HHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999754321 1 124678899
Q ss_pred hhhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChhccceeee
Q psy8107 984 WYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMY 1063 (1613)
Q Consensus 984 ~~~~vL~~s~~i~~~g~~~~~l~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~lf 1063 (1613)
|++++++.++++++.|.++|+++++++++|+++++++.||||+.+|++++++++|+++++++++|++||||+.+|++|+|
T Consensus 159 f~~~vl~~s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~ 238 (523)
T PF00209_consen 159 FYREVLQISDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLF 238 (523)
T ss_dssp ----------------------HHHHHHHHHHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccChhHHHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhcccccccccc
Q psy8107 1064 TPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAE 1143 (1613)
Q Consensus 1064 ~Pd~s~L~~~~vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~ 1143 (1613)
+|||++|.|+++|.+|++|+|||||+|+|++++||||+++++|+.+|++++++.|+++|++||++||+++|++++..
T Consensus 239 ~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~--- 315 (523)
T PF00209_consen 239 TPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANEL--- 315 (523)
T ss_dssp SB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHH---
T ss_pred cCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHHhhcccCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCceecccCCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcccccccchhhhhHh----
Q psy8107 1144 GTGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPILTEA---- 1219 (1613)
Q Consensus 1144 ~~~i~~~~~~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~~~r~~~~~~~~~---- 1219 (1613)
+.++++++++|+||+|+++|++|++||+|++|+++||+|++++|++|+++++|++++.++|++..+|++|..++.+
T Consensus 316 ~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~~~~r~~~~~~v~~~ 395 (523)
T PF00209_consen 316 GVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEFPISRKKRKKVTLIVCLV 395 (523)
T ss_dssp HHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----HHHHHHHHHHHH
T ss_pred CCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecCccchhhccceeHHHhhh
Confidence 3456667789999999999999999999999999999999999999999999999999999998866666555433
Q ss_pred --hhhhhhcchhhhHHHHHHHhhcceeeeeeeccccccceeccccCCceEEEEeE-eeechhhhhhcccCCccceeeehh
Q psy8107 1220 --LKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGV-EWLNISDFLGKIKKGLELHAMCFV 1296 (1613)
Q Consensus 1220 --l~gL~~vt~gG~y~~~l~d~yga~f~ll~~~~~~~l~e~Ials~~~lwiyg~~-~~~~i~~mlg~~~~~~~~w~~~w~ 1296 (1613)
++|+++++.+|.|+++++|+|.+.+.+++. +++|++++. |+||.. ...|++.|+|. +.. .+|+++|+
T Consensus 396 ~~l~gl~~~t~~G~~~~~~~d~~~~~~~l~~~----~l~e~i~v~----wvyG~~~~~~di~~~~g~-~~~-~~w~~~w~ 465 (523)
T PF00209_consen 396 GFLLGLPFCTQGGIYIFDLLDDYVGSISLLII----ALLECIAVG----WVYGWDRFREDINEMLGF-KPG-KFWKFLWK 465 (523)
T ss_dssp HHHHHHHHHBT---THHHHHHHHTTTHHHHHH----HHHHHHHHH----TTSTHHHHHHHHHTT-SS-----THHHHHHH
T ss_pred HeEeccccccccHHHhcchHhhcchhHHHHHH----HHHHHHhee----ccccceehhhhhcccccc-cHH-HHHHhhEE
Confidence 348888999999999999999877766655 788999887 999994 45689999987 444 79999999
Q ss_pred hhhhhheee
Q psy8107 1297 FKSAVVFLC 1305 (1613)
Q Consensus 1297 fitPvill~ 1305 (1613)
|++|++++.
T Consensus 466 ~v~Pi~ll~ 474 (523)
T PF00209_consen 466 YVTPIILLV 474 (523)
T ss_dssp THHHHHHHH
T ss_pred Eeecccccc
Confidence 999988763
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=100.00 E-value=2.3e-68 Score=629.64 Aligned_cols=413 Identities=27% Similarity=0.450 Sum_probs=358.3
Q ss_pred ccccccccccchhhhhHHhhhheeeeccCCCc--ccccccchhHhHHHHHhhhcchhhhHHHhhhhccCCChhhhhhhhh
Q psy8107 840 WYWQITWRFLGPAIMSCILVSSIICRFLKKPS--YSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIH 917 (1613)
Q Consensus 840 ~yWk~cW~fItP~il~~I~i~~ii~~~~~~P~--Y~~~g~~FLIpYli~l~liGlPll~lElalGQ~~r~g~i~a~~~i~ 917 (1613)
.-|..++.||..+++++|+++|+ ||+|+ +.+|||||++||+++++++|+|++++|+++||++|++++++++++.
T Consensus 6 e~w~SrlGFILAa~GsAVGLGNi----WrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~ 81 (439)
T COG0733 6 EQWSSRLGFILAAAGSAVGLGNI----WRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLA 81 (439)
T ss_pred cchhhHHHHHHHHHHHHhccccc----ccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhc
Confidence 36999999999999999999987 89996 7899999999999999999999999999999999999999999997
Q ss_pred --hcccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcCCcccCCchhhhhhhhhccccCCCC
Q psy8107 918 --PWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNI 995 (1613)
Q Consensus 918 --p~~~GvG~~~~li~~li~~YYsVi~aW~L~Y~~~Sf~~~lpW~~C~~~~n~~~~~~C~~s~~~~~f~~~~vL~~s~~i 995 (1613)
+.|.++||..+++++++++||+||+||++.|++.|++|.++ .+ . .....+|. ..+
T Consensus 82 ~~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~~--~-------------~~~~~~f~-------~~~ 138 (439)
T COG0733 82 PKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-DT--G-------------EQFAQLFG-------QTI 138 (439)
T ss_pred cCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC--h-------------hHHHHHHH-------HHh
Confidence 78999999999999999999999999999999999999886 11 0 01122221 123
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhcccccceeeeeehhhHHH--HHHHHHHHHhccCCChhccceeeeccccccccCh
Q psy8107 996 ESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPY--IVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDP 1073 (1613)
Q Consensus 996 ~~~g~~~~~l~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~--vlL~iLlir~ltL~Ga~~Gl~~lf~Pd~s~L~~~ 1073 (1613)
++++...++++++++++++++..++.||||+..|+ +||. +++++|++|++|||||.+|++|+|+|||++|.|+
T Consensus 139 ~~~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~~ki-----mMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~ 213 (439)
T COG0733 139 SNPGLAVIFHLLFLVLTALIVSRGVKKGIEKANKI-----MMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDP 213 (439)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH-----HHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCch
Confidence 34677889999999999999999999999999998 8995 6789999999999999999999999999999999
Q ss_pred hHHHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhccccccccccCCCceecccC
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAE 1153 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~~~~i~~~~~~ 1153 (1613)
++|++|+||+|||||+|+|+|+|||||.++++|+.++++.++++|++++++||++|||++++++.+ +.+
T Consensus 214 ~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~-----------~~~ 282 (439)
T COG0733 214 KVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD-----------ASQ 282 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999988754 678
Q ss_pred CCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcccccccchhhhhHhh---hhhhhcchhh
Q psy8107 1154 GTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPILTEAL---KGMEKVAEHI 1230 (1613)
Q Consensus 1154 G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~~~r~~~~~~~~~l---~gL~~vt~gG 1230 (1613)
||||+|+++|++|.+||.|++++++||+++++||+||+++|+|++++.++|+++++|+++.++++++ +|+++++..|
T Consensus 283 GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~~~~R~~a~~~~~~~~fl~gi~~~ls~g 362 (439)
T COG0733 283 GPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKFGISRKKATWLIGILIFLLGIPSILSFG 362 (439)
T ss_pred CCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHhHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999887654 4778888888
Q ss_pred hHHHHHHHhhcceeeeeeeccccccceeccccCCceEEEEeEeeechhhhhhcc-cCCccceeeehhhhhhhheeee
Q psy8107 1231 NEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWLNISDFLGKI-KKGLELHAMCFVFKSAVVFLCK 1306 (1613)
Q Consensus 1231 ~y~~~l~d~yga~f~ll~~~~~~~l~e~Ials~~~lwiyg~~~~~~i~~mlg~~-~~~~~~w~~~w~fitPvill~~ 1306 (1613)
..+++.+|++...+.+.. .++...+.+. |+++.. +..+-+++. ++...+|.+|-+|++|++++..
T Consensus 363 ~~~fD~~D~~~s~~l~pl----gaL~~~i~~~----w~~~~~---~~~~~~~~~s~~~~~~w~~~vr~i~Pi~i~~v 428 (439)
T COG0733 363 LSIFDLVDFVVSNILMPL----GALLIAIFVG----WVLKKE---LLREELNAGSAKLFKIWLYLVRYIAPIVILVV 428 (439)
T ss_pred chHHHHHHHHHHHHHHHH----HHHHHHHHHH----HhcCHH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 788888888865443322 2566666555 554321 122222222 1344789999999999887643
No 5
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=100.00 E-value=5.9e-44 Score=354.80 Aligned_cols=160 Identities=74% Similarity=1.144 Sum_probs=154.0
Q ss_pred hcceeeeeeeccccccceeccccCCceEEEEeEeeechhhhhhcccCCccceeeehhhhhhhheeeeccccccccccCcc
Q psy8107 1240 YGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVS 1319 (1613)
Q Consensus 1240 yga~f~ll~~~~~~~l~e~Ials~~~lwiyg~~~~~~i~~mlg~~~~~~~~w~~~w~fitPvill~~~~~~~~~~~~~~~ 1319 (1613)
||++||.++........|++.+++|.|++|+...|+|+.+.+|+.++. .-..||+|.++++++|++.+|+|||++|++
T Consensus 1 yGavFdqL~~eq~~~~Kev~~lsmgdLL~h~~v~WLNp~~slgk~kKe--~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~ 78 (160)
T cd01255 1 YGAVFDQLFREHQKSCKQPIDLSPGDLLYHGGVEWLNPSDSLGKIKKE--LELMCFVFKSAVVLVYKERLKQKKKLMGVS 78 (160)
T ss_pred CchHHHHHHHhcccccccccccCHHHhhhhcceeeecCChhhccccCC--ceEEEEEecceEEEEEcCcchhhhcccccc
Confidence 789999999988889999999999999999999999999999987775 555689999999999999999999999999
Q ss_pred CCCCCCccceEEEEEEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHHHHHHhh
Q psy8107 1320 NKGCSNEVEIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQIIRESV 1399 (1613)
Q Consensus 1320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1399 (1613)
+..-++|+||||||||||+++||||++|++|||++|+|||||+|||+|||||+|||||||+||+||+|+|+|||||||++
T Consensus 79 r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~~ 158 (160)
T cd01255 79 RKNATNEVDPFRFRVLIPVTALQVRASSAADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRESV 158 (160)
T ss_pred ccccccccCceeEEEeeceeeeeeecCCCcCcccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy8107 1400 RN 1401 (1613)
Q Consensus 1400 ~~ 1401 (1613)
||
T Consensus 159 rr 160 (160)
T cd01255 159 RR 160 (160)
T ss_pred cC
Confidence 97
No 6
>KOG0932|consensus
Probab=100.00 E-value=2.3e-42 Score=401.84 Aligned_cols=185 Identities=28% Similarity=0.422 Sum_probs=176.4
Q ss_pred ccceEEeccc-----ccccccCCCceEEEEEEeCCeEEEecCCCcCCC-CCCCCCCceeEeCceEEeeCCCCCCCCceEE
Q psy8107 4 VKKWLLRKKH-----QIELARKRGWKGYWVCLKGTTLLFYPCDSREGR-SVDAAPKHLIIVDGAIMQPIPEHPKRDYIFC 77 (1613)
Q Consensus 4 ~Kg~L~~K~~-----k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~-~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~ 77 (1613)
+.|+|+||-| |+||+|||+||+||+||||++|||.||++..++ ......+++|+|||+++++|.||+||+|||+
T Consensus 508 k~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~AtdY~KKp~Vf~ 587 (774)
T KOG0932|consen 508 KSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPATDYSKKPHVFK 587 (774)
T ss_pred hhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCcccccCCceEE
Confidence 5699999965 999999999999999999999999999999887 4446699999999999999999999999999
Q ss_pred EEcCCCCeEEeecCCHHHHHHHHHHHHHHHHh--------------hhhccCCccccccccHHHHhhhhhccChHHHHHh
Q psy8107 78 LSTAFGDAYLFQAPCQVELENWVNSIHSACAA--------------AFARHRGKTGTLHLLQEEIFRLEKAIDSDNKLKH 143 (1613)
Q Consensus 78 L~t~dg~~yLFQA~~~~em~~Wi~~I~~aaa~--------------~~~r~~~~~~~~~l~~~e~~~~~~ki~~e~k~k~ 143 (1613)
|+|+||++|||||++++||++||.+||.+||. +|+||++|..+++++++||++ +||.|+|+
T Consensus 588 lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPpfPaaV~Sqkkf~rPlLP~~~t~lsqeeQlr-----sHE~kl~~ 662 (774)
T KOG0932|consen 588 LRTADWRVFLFQAPSQEEMQSWIERINLVAAAFSAPPFPAAVGSQKKFSRPLLPSIPTRLSQEEQLR-----SHEAKLKA 662 (774)
T ss_pred EEeccceeEEEeCCCHHHHHHHHHHHHHHHHhccCCCCcccccccccccccccCcccccccHHHHHH-----hHHHHHHH
Confidence 99999999999999999999999999999996 899999999999999999999 99999999
Q ss_pred HHHHHHhhhcCCcchhhhHHHHHHHHHhhhhhcccchhhhhhhhhhccCC
Q psy8107 144 MADLQMSVLAEPETKQQINEQITQWEENLERLHCEQFRLRCYMASLQNGE 193 (1613)
Q Consensus 144 ~~~~~~~~~~~~~~kk~~~~~i~~~~~k~e~l~~e~~Ry~~Y~~~L~~~~ 193 (1613)
|.+|+.+|++.+++||.+.+++++|++|++||+||++||++|+++|+...
T Consensus 663 l~~el~ehr~~~~~~~~r~ke~ee~Rlk~~yLefEKtRYetYi~lLr~kl 712 (774)
T KOG0932|consen 663 LADELAEHRSQPVERKGRGKELEEYRLKEHYLEFEKTRYETYINLLRRKL 712 (774)
T ss_pred HHHHHHHHHhcCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999996543
No 7
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.94 E-value=1.8e-26 Score=250.87 Aligned_cols=178 Identities=39% Similarity=0.582 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy8107 594 LSKVIIELIETERTYVKNLNGLLENYLEPLKKETF-LSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSS 672 (1613)
Q Consensus 594 R~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~i-L~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~~~~~~~ 672 (1613)
|+++++||++||++||++|+.+.+.|..|+..... ++.++++.||+|+++|+++|+.|+.+|+++..++..
T Consensus 1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~-------- 72 (181)
T cd00160 1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDKELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEWDK-------- 72 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCc--------
Confidence 67899999999999999999999999999998777 899999999999999999999999999999987641
Q ss_pred chhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhc-cCChHHHHHHHhhCCCCCCCCCccccccccchhhhchHH
Q psy8107 673 QFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPN-EGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPL 751 (1613)
Q Consensus 673 ~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~-~~~~~f~~fl~~~~~~~~~~l~L~slLikPVQRI~KY~L 751 (1613)
....+|++|+++.+.++.|..||.+++.+.+.++++ +.++.|++|++.++. ..++++|.+||++||||++||+|
T Consensus 73 ----~~~~i~~~f~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~-~~~~~~l~~~L~~PvQRl~rY~l 147 (181)
T cd00160 73 ----SGPRIGDVFLKLAPFFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAES-ECGRLKLESLLLKPVQRLTKYPL 147 (181)
T ss_pred ----ccchHHHHHHHhhhHHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHH-hcccCCHHHHhhhhHHHhchHHH
Confidence 123599999999998899999999999999999996 578999999998876 66789999999999999999999
Q ss_pred HHHHHhhcCCCCCcccchhhhHHHHHHhhhccc
Q psy8107 752 LLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLI 784 (1613)
Q Consensus 752 LLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI 784 (1613)
||++|+|+|+++|+|+..+..|+..+..++.-+
T Consensus 148 LL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~i 180 (181)
T cd00160 148 LLKELLKHTPDGHEDREDLKKALEAIKEVASQV 180 (181)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998888776554
No 8
>KOG3519|consensus
Probab=99.93 E-value=8.6e-26 Score=292.20 Aligned_cols=427 Identities=24% Similarity=0.246 Sum_probs=282.7
Q ss_pred eEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccceeeeeeecccccccccCCCchhhHHHhhhccceeeecccc
Q psy8107 276 SVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREMEDHNYFVPPRGDLIETYLSTHEVVEVCAKI 355 (1613)
Q Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~iEv~~~~ 355 (1613)
..++|..++ .++|..++.+-+.+.|+.+...|+.||.++....... .+..+| +.+..+. +...++++..
T Consensus 104 ~~~~~~~~~-----~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-a~~~~~---~~~~q~~--~~~~~~~~~~ 172 (756)
T KOG3519|consen 104 TSYIYDGSL-----VIKPFQRVMEYLLLLSELRASSPSSHADQLPKTEANI-ANLPIP---VVINQQK--RRLEQVLKYS 172 (756)
T ss_pred eeeeecCcc-----ccccccccccchhccccccccccccchhhcchhhhcc-ccccCc---chhhhhh--hccccccccC
Confidence 336677776 8999999999999999999999999999999998843 666666 6666554 6788999988
Q ss_pred eEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhh-hcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc
Q psy8107 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAM-HNGLIKGDEIMVINGAIVSDLDMMYLESVLQE 434 (1613)
Q Consensus 356 ~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~-~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~ 434 (1613)
+....-.. ...+.|.... +. .++..+..+..+..+|+++ .-+++.++|| +.+..
T Consensus 173 ~~~~~~~~---~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----------------~~~~~ 227 (756)
T KOG3519|consen 173 PPDELKLK---DFRSKFIPTS--IS---KPSLYVESLLKGLTGGAASEGDNRKQSEEI-----------------KEFPQ 227 (756)
T ss_pred Cchhhhhc---cceeeccccc--cc---CCCcchhhhhcccccchhhcccchhhhhhh-----------------hhccC
Confidence 77766622 2345554433 33 2333445677888999998 8899999999 22221
Q ss_pred C-CeEEEEEeecCCCCCCCCCCCcccccccccccccCCCCCCCCCCCccccccccCCCCCCCCcCCCCCCCCCCCCCCCC
Q psy8107 435 E-LSLCMMMRSSRTEPPETAGSGMLSATDDMIESLVCPPPPSDPPMISEEMICDLIVPAPSWSKEHNISEQPPEKVKMPG 513 (1613)
Q Consensus 435 ~-~~l~L~vr~~~~~p~~~~~s~~~~~td~~~~~~~~pPPp~~~p~~~ee~i~s~~~p~p~~~~~~~~~~~~~~~~~~p~ 513 (1613)
. ..+...++..-.......... +. ..+.....+++....... ....+. . ...|... .. +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~~~~~--------~~----~ 287 (756)
T KOG3519|consen 228 LSSGTDSQARNLLILLGLTVEAP---AL-KRVVRADMRELGLEKLDA-KTVLDE-S--VAEESSG--------RT----M 287 (756)
T ss_pred ccccchhhccchhccCccccccc---cc-ccceecccccchhhhhhc-cccchh-h--hhhhhcc--------cc----c
Confidence 0 111111110000000000000 00 000111111111110000 000000 0 0000000 00 0
Q ss_pred CcccccccccCCCCCCccCCCCCCCCCCCCchhhhhhhhccccccccCCCCCccCCCCCCCCCCCC---CCCCCCCCCCh
Q psy8107 514 SLYNRDLLMSNNNNSSTINNNNVNSNNKGETYEIENLIKSAGEVTGFCRSPVETHRTSPTGSMANQ---SSLNPSRQLTD 590 (1613)
Q Consensus 514 ~~~~~p~~~~~~~~ss~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~S~~~s~~~s~s~s~~~~---s~~~~~~~~~~ 590 (1613)
. .....+.......+....++. ..+..+.... ...........
T Consensus 288 ~---------------------------------~~~s~s~rl~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 333 (756)
T KOG3519|consen 288 T---------------------------------LFASESERLIINQKLELLSAP-TGPVESAPSDYDGYLDAMRPSESL 333 (756)
T ss_pred h---------------------------------hchhhhhcchhhhhhhccccc-cCcccCcccccchhHHhhhhhhhh
Confidence 0 000000000111111111111 0000001110 00111222356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q psy8107 591 AEKLSKVIIELIETERTYVKNLNGLLENYLEP-LKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFD 669 (1613)
Q Consensus 591 ~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~p-L~~~~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~~~~ 669 (1613)
..+|.++++|+++||+.||++|+.+.+.|+.+ .+....+..++++.+|+|+++|+.||..||+.|++.....
T Consensus 334 ~~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~~~~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~~~~~~------- 406 (756)
T KOG3519|consen 334 DKKRTKVIKELLDTEKNYVKDLNALCEGYLPPQNKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQQINPE------- 406 (756)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHHhcchh-------
Confidence 78899999999999999999999999999999 4566789999999999999999999999999999998643
Q ss_pred CccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhccCChHHHHHHHhhCCCCCCC-CCccccccccchhhhc
Q psy8107 670 QSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHS-STLESYLIKPIQRILK 748 (1613)
Q Consensus 670 ~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~~~~~~f~~fl~~~~~~~~~~-l~L~slLikPVQRI~K 748 (1613)
++.+.+..||.+|+++.+.|..|..||++|+.+...+.+.++++++.+|+.+|.....+. ++|+++|++|+||++|
T Consensus 407 ---~~~~~~~~ig~~fL~~~~~f~~ys~yc~~h~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~L~s~l~~pvqri~k 483 (756)
T KOG3519|consen 407 ---LIPPSLSEIGPVFLEQLDVFKIYSEYCNNHPKAQKKLSKLKKKKKVKEFLEACNLLQQHSNSSLSSFLLKPVQRICK 483 (756)
T ss_pred ---hcchhHhHHHHHHHHhcccceeechhhhccchHHHHHHHHhhhhhhhhhhhhhhhhhccccCCchhhhccHHHHhcc
Confidence 345567789999999999999999999999999999999999999999999999877655 9999999999999999
Q ss_pred hHHHHHHHhhcCCCCCcccchhhhHHHHHHhhhcccccccchhHH-HHHHHHhhc
Q psy8107 749 YPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIFTTGAGEYW-LKLFDSFAG 802 (1613)
Q Consensus 749 Y~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~~T~gG~yv-~eL~D~y~a 802 (1613)
|||+|+++++.|+.++.||.++..+.-.+.-+...||.++.-.+. -+.+|.++.
T Consensus 484 YPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~ 538 (756)
T KOG3519|consen 484 YPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAA 538 (756)
T ss_pred CchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhh
Confidence 999999999999999999999999999999999999877654433 334555543
No 9
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.93 E-value=6.4e-26 Score=246.26 Aligned_cols=177 Identities=41% Similarity=0.625 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchh
Q psy8107 597 VIIELIETERTYVKNLNGLLENYLEPLKKET-FLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFK 675 (1613)
Q Consensus 597 VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~-iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~~~~~~~~~~ 675 (1613)
|++||++||++||++|+.+.+.|..|+...+ .++.++.+.||+|+++|+++|+.|+.+|+++..++..
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~----------- 69 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDD----------- 69 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcccc-----------
Confidence 5899999999999999999999999999877 8999999999999999999999999999999987631
Q ss_pred hhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhccCChHHHHHHHhhCCCCC-CCCCccccccccchhhhchHHHHH
Q psy8107 676 NILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQ-HSSTLESYLIKPIQRILKYPLLLQ 754 (1613)
Q Consensus 676 ~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~~~~~~f~~fl~~~~~~~~-~~l~L~slLikPVQRI~KY~LLLk 754 (1613)
....+|++|+++.+.++.|..||.+++.+.+.+.++++++.|..|+++++.... .+++|.+||++||||++||+|||+
T Consensus 70 -~~~~i~~~f~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~lll~ 148 (180)
T smart00325 70 -SPERIGDVFLKLEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQRLTKYPLLLK 148 (180)
T ss_pred -cccHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHhhcChhHHHHHHHHhCChhhccCCHHHHHhHHHHHhccHHHHHH
Confidence 123599999999888999999999999999999998899999999999876654 558999999999999999999999
Q ss_pred HHhhcCCCCCcccchhhhHHHHHHhhhcccc
Q psy8107 755 QLCNLTDPHCDEHLHLVGVVCLISFLVGLIF 785 (1613)
Q Consensus 755 eLLK~T~~dh~Eh~hL~~alclv~fLigLI~ 785 (1613)
+|+|+|+++|+|+..+..|+..+.-+...+|
T Consensus 149 ~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 179 (180)
T smart00325 149 ELLKHTPEDHEDREDLKKALKAIKELANQVN 179 (180)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999988887766554
No 10
>KOG4424|consensus
Probab=99.91 E-value=4.2e-24 Score=253.85 Aligned_cols=192 Identities=26% Similarity=0.357 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhccHHHHHHHHHH-HHHHHHHHHhcccccCCCC
Q psy8107 591 AEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQ-FLQNLVEALENEADFHHFD 669 (1613)
Q Consensus 591 ~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~iL~~~e~~~LF~NIeeIl~~h~~-FL~~Le~~~~~~~~~~~~~ 669 (1613)
.+|+.++++||+.||++||+.|..|.+.|+.+|..+..++.+.+..||+||..|+.+|.. ||..|+.++
T Consensus 64 ~qk~~~iaqEll~tE~~Yv~~L~lLd~~F~~~L~~~~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~---------- 133 (623)
T KOG4424|consen 64 LQKLRHIAQELLDTERTYVKRLHLLDQVFCRRLLEEASIPADVITGLFGNISSIHNFHGQFLLPELEKRI---------- 133 (623)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH----------
Confidence 789999999999999999999999999999999988899999999999999999999977 556665553
Q ss_pred CccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhc-cCChHHHHHHHhhCCCC-CCCCCccccccccchhhh
Q psy8107 670 QSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPN-EGNQALQEFLSSRNPRQ-QHSSTLESYLIKPIQRIL 747 (1613)
Q Consensus 670 ~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~-~~~~~f~~fl~~~~~~~-~~~l~L~slLikPVQRI~ 747 (1613)
||++|.+.++.||+|+.|..||++|.++++.+ ++++.|+.++++.+..+ +.+++|.+++|.|||||+
T Consensus 134 -----------Iadv~qKlAPFLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIP 202 (623)
T KOG4424|consen 134 -----------IADVFQKLAPFLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVP 202 (623)
T ss_pred -----------HHHHHHHhhhHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhhh
Confidence 99999999999999999999999999999997 66799999999988665 567899999999999999
Q ss_pred chHHHHHHHhhcCCCCCcccchhhhHHHHHHhhhcccc----cccchhHHHHHHHHhhch
Q psy8107 748 KYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIF----TTGAGEYWLKLFDSFAGT 803 (1613)
Q Consensus 748 KY~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~----~T~gG~yv~eL~D~y~a~ 803 (1613)
||.|||++++++++++++|...+..++..|.-..+.+| ..+.+.+++++.+.+++.
T Consensus 203 RYeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~e 262 (623)
T KOG4424|consen 203 RYELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGNE 262 (623)
T ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999988888876 346777888888888764
No 11
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.90 E-value=8.9e-24 Score=213.52 Aligned_cols=106 Identities=28% Similarity=0.441 Sum_probs=97.5
Q ss_pred ccceEEeccc-----ccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCC-CCCCceeEeCceEEeeCCCCCCCCceEE
Q psy8107 4 VKKWLLRKKH-----QIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVD-AAPKHLIIVDGAIMQPIPEHPKRDYIFC 77 (1613)
Q Consensus 4 ~Kg~L~~K~~-----k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~-~~p~~~I~l~~~~~~~a~dy~KK~nVF~ 77 (1613)
.+|+|.||.+ |+++.++|+|+++||||+|+.|+||||++....+.. ...+++|+|++|+|+++.||+||+|||+
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~ 81 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFR 81 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEE
Confidence 4799999953 888888999999999999999999999987666544 4678999999999999999999999999
Q ss_pred EEcCCCCeEEeecCCHHHHHHHHHHHHHHHHh
Q psy8107 78 LSTAFGDAYLFQAPCQVELENWVNSIHSACAA 109 (1613)
Q Consensus 78 L~t~dg~~yLFQA~~~~em~~Wi~~I~~aaa~ 109 (1613)
|+++||++|||||+|++||++||++||.|||+
T Consensus 82 L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 82 LRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred EEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999986
No 12
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=99.90 E-value=1.8e-24 Score=195.45 Aligned_cols=76 Identities=45% Similarity=0.784 Sum_probs=71.4
Q ss_pred eEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccceeeeeeeccccccccc-CCCchhhHHHhhhccceeeeccc
Q psy8107 276 SVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREMEDHNYF-VPPRGDLIETYLSTHEVVEVCAK 354 (1613)
Q Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~iEv~~~ 354 (1613)
++||||||||+++|.|||||||+|+|++|||+|+|||++||||||++++ ++++|+ +|++.|+|++++ |||||||||
T Consensus 1 ~~~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~-e~~~~~~~p~~~e~~~~~~--~~eiEvcpk 77 (77)
T cd01818 1 PSWVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRM-ENHEYFYIPNPLEDIYDLL--YKEIEICPK 77 (77)
T ss_pred CCEEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEec-CCccEEEcCChHHHHHHhh--hheEEeccC
Confidence 4699999999999999999999999999999999999999999999984 577777 999999999996 899999997
No 13
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.90 E-value=8.4e-24 Score=215.87 Aligned_cols=105 Identities=32% Similarity=0.526 Sum_probs=76.2
Q ss_pred ccceEEeccc-----ccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCC--------CCCCceeEeCceEEeeCCCCC
Q psy8107 4 VKKWLLRKKH-----QIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVD--------AAPKHLIIVDGAIMQPIPEHP 70 (1613)
Q Consensus 4 ~Kg~L~~K~~-----k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~--------~~p~~~I~l~~~~~~~a~dy~ 70 (1613)
..|+|.||.. |+.+.++|+|+++|+||+|+.|+||||+........ ..|...|+|+||+|+.|.||+
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~ 81 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT 81 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence 4688888843 666678999999999999999999999654332222 234456999999999999999
Q ss_pred CCCceEEEEcCCCCeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 71 KRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 71 KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
||+|||+|+|+||.+|||||.|++||++||++||.+||
T Consensus 82 Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~AA 119 (119)
T PF15410_consen 82 KRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAAA 119 (119)
T ss_dssp TCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH--
T ss_pred cCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999987
No 14
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.89 E-value=2.1e-23 Score=225.24 Aligned_cols=175 Identities=38% Similarity=0.604 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchh
Q psy8107 597 VIIELIETERTYVKNLNGLLENYLEPLKK-ETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFK 675 (1613)
Q Consensus 597 VI~ELl~TEr~YVkdL~~L~e~yl~pL~~-~~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~~~~~~~~~~ 675 (1613)
|++||++||+.|+++|+.+.+.|++|+.. .+.++..+.+.+|+|+++|+++|+.|+..|+.++..+..
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~~~~~----------- 69 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLKPLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMKEWSN----------- 69 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSS-----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHHhhhc-----------
Confidence 68999999999999999999999999998 889999999999999999999999999999998865532
Q ss_pred hhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhc-cCChHHHHHHHhhCC-CCCCCCCccccccccchhhhchHHHH
Q psy8107 676 NILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPN-EGNQALQEFLSSRNP-RQQHSSTLESYLIKPIQRILKYPLLL 753 (1613)
Q Consensus 676 ~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~-~~~~~f~~fl~~~~~-~~~~~l~L~slLikPVQRI~KY~LLL 753 (1613)
...||++|+...+.++.|..||.+++.+.+.++++ +++..|..|++.++. .....+++.++|++|+||++||+++|
T Consensus 70 --~~~i~~if~~~~~~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~Piqrl~rY~lll 147 (180)
T PF00621_consen 70 --IQSIGDIFLKFEPFLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSPESKRLSLSSLLIKPIQRLPRYPLLL 147 (180)
T ss_dssp --GGGHHHHHHHHTTGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHCTTSTHHHHTTHHHHHHHHHHHHH
T ss_pred --cchhhhhhhhccccccceeccchheechhhhhhHHHhhccccccccccccccccccCCCHHHHHHHhhhHHHHHHHHH
Confidence 23599999996676779999999999999999886 445559999998766 45577899999999999999999999
Q ss_pred HHHhhcCCCCCcccchhhhHHHHHHhhhccc
Q psy8107 754 QQLCNLTDPHCDEHLHLVGVVCLISFLVGLI 784 (1613)
Q Consensus 754 keLLK~T~~dh~Eh~hL~~alclv~fLigLI 784 (1613)
++|+++|+++|+||..|..++..+..+...+
T Consensus 148 ~~llk~t~~~~~d~~~L~~a~~~i~~l~~~i 178 (180)
T PF00621_consen 148 KRLLKNTPPDHPDYKSLQKALDQIKELIQHI 178 (180)
T ss_dssp HHHHHTSSTTSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998888776554
No 15
>KOG2996|consensus
Probab=99.87 E-value=4.8e-22 Score=233.25 Aligned_cols=221 Identities=24% Similarity=0.424 Sum_probs=198.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccC
Q psy8107 587 QLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFH 666 (1613)
Q Consensus 587 ~~~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~ 666 (1613)
..++.+||..++.||-+||+.|++.|..|.+.|++||+. ++++.+++.||.||++|..+|..||++++..+.....
T Consensus 191 ~~te~dkRncClrEi~~TE~kY~~tL~sI~k~f~~PLk~--~l~~ad~~ivFiNieel~klHt~ll~ei~~sv~v~~~-- 266 (865)
T KOG2996|consen 191 KMTETDKRNCCLREIQQTEEKYTQTLESIEKTFMEPLKR--FLPPADYNIVFINIEELNKLHTALLAEIEYSVKVAGG-- 266 (865)
T ss_pred cCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCChhhhheeEecHHHHHHHHHHHHHHhHHHhhCCCc--
Confidence 567789999999999999999999999999999999997 8999999999999999999999999999999876553
Q ss_pred CCCCccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhc-cCChHHHHHHHhhCCCCC-CCCCccccccccch
Q psy8107 667 HFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPN-EGNQALQEFLSSRNPRQQ-HSSTLESYLIKPIQ 744 (1613)
Q Consensus 667 ~~~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~-~~~~~f~~fl~~~~~~~~-~~l~L~slLikPVQ 744 (1613)
+.++.+|+++.++|-+|..||+|-+.|.+.+..+ +.+..++.-+++|..+.. ++.+|.++|.-|+|
T Consensus 267 ------------qtl~qVFikyker~liYG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~nngkF~l~DLL~VPmQ 334 (865)
T KOG2996|consen 267 ------------QTLYQVFIKYKERLLIYGKYCSNVESARKLLNELLKTREDVSRKLEECTARANNGKFTLRDLLVVPMQ 334 (865)
T ss_pred ------------ccHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCceeeceeeeeeHH
Confidence 2499999999999999999999999999999995 777788999999987765 78999999999999
Q ss_pred hhhchHHHHHHHhhcCCCCCcccchhhhHHHHHHhhhcccccccchhHHHHHHHHhhchhhHHHHHHHhheeEEeecCch
Q psy8107 745 RILKYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHE 824 (1613)
Q Consensus 745 RI~KY~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~~T~gG~yv~eL~D~y~a~~~ll~~al~E~i~i~WiyG~~ 824 (1613)
|++||+|||+||+|+|....++. .|..|+..+..++..||........+..+|+|.-++.-|-..+.+ ||..
T Consensus 335 RvlKYhLLLkEL~kht~~a~ek~-~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIenL~~pl~~-------~GRp 406 (865)
T KOG2996|consen 335 RVLKYHLLLKELVKHTDEASEKR-NLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIENLSQPLHD-------FGRP 406 (865)
T ss_pred HHHHHHHHHHHHHHhcccCChhh-hHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHhhcchHHH-------hCCC
Confidence 99999999999999998777665 899999999999999999999999999999998887777666544 6655
Q ss_pred hHHHHhh
Q psy8107 825 KFTNDIY 831 (1613)
Q Consensus 825 rf~~di~ 831 (1613)
+.-..++
T Consensus 407 kiDGElk 413 (865)
T KOG2996|consen 407 KIDGELK 413 (865)
T ss_pred CcCceEE
Confidence 4444443
No 16
>KOG3518|consensus
Probab=99.86 E-value=1e-21 Score=218.65 Aligned_cols=180 Identities=30% Similarity=0.484 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccCCC
Q psy8107 592 EKLSKVIIELIETERTYVKNLNGLLENYLEPLKKE---TFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHF 668 (1613)
Q Consensus 592 ~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~---~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~~~ 668 (1613)
....+|+.||++|||+||+||+.+++.|+..+.+. --+.-+++..+||||++|+.|+..++.+|+.+-...
T Consensus 120 ~~ldriaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ldaadld~------ 193 (521)
T KOG3518|consen 120 LHLDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFAFNKELLNDLDAADLDC------ 193 (521)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhcccch------
Confidence 34567999999999999999999999999999732 236779999999999999999999999998874321
Q ss_pred CCccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhccCChHHHHHHHhhCCCCCCCCCccccccccchhhhc
Q psy8107 669 DQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILK 748 (1613)
Q Consensus 669 ~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~~~~~~f~~fl~~~~~~~~~~l~L~slLikPVQRI~K 748 (1613)
..|+.||......|..|..||.||++....|.+|++++-...++++++....|.++|.+||+||||||.|
T Consensus 194 ----------v~ia~cfve~s~efe~yieyctny~rmmatl~~~~q~~ilaka~qerq~al~hsl~l~ayllkpvqrilk 263 (521)
T KOG3518|consen 194 ----------VAIAECFVEKSEEFEDYIEYCTNYHRMMATLTECMQNKILAKAFQERQEALKHSLPLGAYLLKPVQRILK 263 (521)
T ss_pred ----------HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 2499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCC-Ccccch-hhhHHHHHHhhhcccccc
Q psy8107 749 YPLLLQQLCNLTDPH-CDEHLH-LVGVVCLISFLVGLIFTT 787 (1613)
Q Consensus 749 Y~LLLkeLLK~T~~d-h~Eh~h-L~~alclv~fLigLI~~T 787 (1613)
|.|+|+++.|+.+.+ |||.+. +..+...++-...-||-.
T Consensus 264 yhlfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~inde 304 (521)
T KOG3518|consen 264 YHLFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDE 304 (521)
T ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcch
Confidence 999999999998754 555544 455667777777777643
No 17
>KOG4305|consensus
Probab=99.85 E-value=8.7e-22 Score=250.73 Aligned_cols=191 Identities=26% Similarity=0.378 Sum_probs=174.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHH----HHHHhccHHHHHHHHHHHHHHHHHHHhc
Q psy8107 586 RQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAE----INALFGNILEIVAFQRQFLQNLVEALEN 661 (1613)
Q Consensus 586 ~~~~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~iL~~~e----~~~LF~NIeeIl~~h~~FL~~Le~~~~~ 661 (1613)
....++.|||++|.||+-||++||+||+.+.+.|++||-+..++++++ +..+|+|+++|+.+|+.||.+|..+.+.
T Consensus 328 ~ls~rEikRQe~I~Eli~tE~d~v~dLel~re~y~kpl~~S~iipE~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r~k~ 407 (1029)
T KOG4305|consen 328 SLSPREIKRQEAIFELIYTEEDFVADLELAREIYRKPLLESSIIPEQERAEFIAHVFGNIEEIIQLNEKLLKALRVRQKL 407 (1029)
T ss_pred hcCHHHhhhhheeEEEEeehhHHHHHHHHHHHHHhChHhhhccCccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Confidence 344568899999999999999999999999999999999999999998 9999999999999999999999988765
Q ss_pred ccccCCCCCccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhh-ccCChHHHHHHHhhCCCC-CCCCCccccc
Q psy8107 662 EADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHP-NEGNQALQEFLSSRNPRQ-QHSSTLESYL 739 (1613)
Q Consensus 662 ~~~~~~~~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~-~~~~~~f~~fl~~~~~~~-~~~l~L~slL 739 (1613)
.+ ++.+|||+|+.++++|+.|..||++++.|...++. .+.|+.|++|+++++..+ +++++|.+||
T Consensus 408 ~G-------------~V~~IGdIll~~lp~~~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp~~rkl~L~~FL 474 (1029)
T KOG4305|consen 408 SG-------------VVEGIGDILLAWLPKAEPYISYGANQAYAKALIEQKKKQNPRFARFLKECESSPESRKLDLVSFL 474 (1029)
T ss_pred CC-------------ccchHHHHHHHHhhhhhHHHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHhChhhhccchhhhh
Confidence 43 45679999999999999999999999999999988 499999999999988765 5779999999
Q ss_pred cccchhhhchHHHHHHHhhcC-CCCCcccchhhhHHHHHHhhhcccccccc
Q psy8107 740 IKPIQRILKYPLLLQQLCNLT-DPHCDEHLHLVGVVCLISFLVGLIFTTGA 789 (1613)
Q Consensus 740 ikPVQRI~KY~LLLkeLLK~T-~~dh~Eh~hL~~alclv~fLigLI~~T~g 789 (1613)
.+|+||+.||||||+++||+| |.+|+||+++..|+..+..++.-++.-.|
T Consensus 475 ~kp~sRl~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g 525 (1029)
T KOG4305|consen 475 TKPTSRLQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQGSG 525 (1029)
T ss_pred ccccchhheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChhhc
Confidence 999999999999999999999 66679999999999999999988885433
No 18
>KOG3520|consensus
Probab=99.83 E-value=6e-20 Score=234.36 Aligned_cols=188 Identities=26% Similarity=0.403 Sum_probs=172.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccC
Q psy8107 587 QLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFH 666 (1613)
Q Consensus 587 ~~~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~ 666 (1613)
......|||+||.||+.||+.+|+.|+++..+|.+||..+.+++.+++..||.|+++|+++|..|+++|.++.+.+..
T Consensus 384 lk~~~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~m~~e~~~~~~~l~~LFP~LdeL~eiH~~f~~~lk~rr~e~~~-- 461 (1167)
T KOG3520|consen 384 LKKDVVKRQEVIYELFQTERHHVRTLKILDRVFYQPMMEELLFPQEELNKLFPCLDELIEIHSSFLQRLKERRKESLV-- 461 (1167)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 345567999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred CCCCccchhhhHhhHHHHHhhhccc-----cc-hhhHHHhchHHHHHHHhhc-cCChHHHHHHHhhCCCC-CCCCCcccc
Q psy8107 667 HFDQSSQFKNILFSIGSAFLYYVNH-----FK-LYSSFCASHSKAQKVLHPN-EGNQALQEFLSSRNPRQ-QHSSTLESY 738 (1613)
Q Consensus 667 ~~~~~~~~~~~i~~IGdvFl~~~~~-----fk-~Y~~Yc~n~~~a~~~L~~~-~~~~~f~~fl~~~~~~~-~~~l~L~sl 738 (1613)
++..|||+++.+.+. |+ .|..||.+|..|.+.++.+ .+++.|++|++++++.+ ++++.|.++
T Consensus 462 ----------vI~~IGDlLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p~cRRL~lkd~ 531 (1167)
T KOG3520|consen 462 ----------VIKRIGDLLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNPVCRRLGLKDC 531 (1167)
T ss_pred ----------hHHHHHHHHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcchHHHhhcchHH
Confidence 678899999988654 44 9999999999999999986 69999999999988765 567999999
Q ss_pred ccccchhhhchHHHHHHHhhcCCCCCcccchhhhHHHHHHhhhccccc
Q psy8107 739 LIKPIQRILKYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIFT 786 (1613)
Q Consensus 739 LikPVQRI~KY~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~~ 786 (1613)
++.-+|||+||||||+.|+|+|.....|+..|..++..+..+++-++.
T Consensus 532 I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~ 579 (1167)
T KOG3520|consen 532 ILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQ 579 (1167)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988764
No 19
>KOG3523|consensus
Probab=99.80 E-value=2.4e-19 Score=213.81 Aligned_cols=186 Identities=25% Similarity=0.393 Sum_probs=168.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy8107 588 LTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHH 667 (1613)
Q Consensus 588 ~~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~~ 667 (1613)
..++.|+|++..|++.+|.+|.+.|+++++.|+.--.-...++..|.+.||+||.++.+.+++||.+||.++++..
T Consensus 252 s~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~l~~~Ls~~d~~~LFSni~~V~~~Serfl~dLE~r~e~ni---- 327 (695)
T KOG3523|consen 252 SPEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKELRSTLSASDRHHLFSNIQDVREVSERFLCDLEARLEENI---- 327 (695)
T ss_pred CHHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHHHHHhcChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc----
Confidence 3456789999999999999999999999999999876677899999999999999999999999999999987542
Q ss_pred CCCccchhhhHhhHHHHHhhhcc-ccchhhHHHhchHHHHHHHhhc-cCChHHHHHHHhhCCC-CCCCCCccccccccch
Q psy8107 668 FDQSSQFKNILFSIGSAFLYYVN-HFKLYSSFCASHSKAQKVLHPN-EGNQALQEFLSSRNPR-QQHSSTLESYLIKPIQ 744 (1613)
Q Consensus 668 ~~~~~~~~~~i~~IGdvFl~~~~-~fk~Y~~Yc~n~~~a~~~L~~~-~~~~~f~~fl~~~~~~-~~~~l~L~slLikPVQ 744 (1613)
.+..|.||...|++ +|.+|..||.|+-.....++++ ..|+.|.+.++..+.. .|++++|.+|||.|+|
T Consensus 328 ---------~i~dicDiv~~ha~~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C~~Lpl~SFLiLPmQ 398 (695)
T KOG3523|consen 328 ---------FIDDICDIVEDHAAKHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKCQGLPLRSFLILPMQ 398 (695)
T ss_pred ---------hhhHHHHHHHHhcccccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccccCCCchhhhhchHH
Confidence 45669999999985 5679999999999999999995 8999999999998765 5677999999999999
Q ss_pred hhhchHHHHHHHhhcCCCCCcccchhhhHHHHHHhhhccccc
Q psy8107 745 RILKYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIFT 786 (1613)
Q Consensus 745 RI~KY~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~~ 786 (1613)
||+|++||++.|++.|++.++++...+.|+..+..++..+|.
T Consensus 399 RITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe 440 (695)
T KOG3523|consen 399 RITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNE 440 (695)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888764
No 20
>KOG2070|consensus
Probab=99.76 E-value=4.6e-18 Score=197.70 Aligned_cols=184 Identities=29% Similarity=0.448 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccCCCCC
Q psy8107 591 AEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQ 670 (1613)
Q Consensus 591 ~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~~~~~ 670 (1613)
.+-|.-|++.+++||+.|++.|+.+.+.|+.|++...+|+..|...|.+|+++|+.+|++++.+||+|-..+...
T Consensus 99 ~~Yr~vVLk~~lesEkey~~eLq~lL~t~L~Plq~s~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~~~~~~q----- 173 (661)
T KOG2070|consen 99 KSYRNVVLKNILESEKEYSKELQTLLSTYLRPLQTSEILSSAEYSYLMGNFEEICTFQQDLVQQLEECTKLPEAQ----- 173 (661)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHhcchHHhHhHHHHHHHHHHHhhcCchhh-----
Confidence 345777999999999999999999999999999999999999999999999999999999999999998665432
Q ss_pred ccchhhhHhhHHHHHhhhccccc-hhhHHHhchHHHHHHHhhccCChHHHHHHHhhCCCCCCCCCccccccccchhhhch
Q psy8107 671 SSQFKNILFSIGSAFLYYVNHFK-LYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKY 749 (1613)
Q Consensus 671 ~~~~~~~i~~IGdvFl~~~~~fk-~Y~~Yc~n~~~a~~~L~~~~~~~~f~~fl~~~~~~~~~~l~L~slLikPVQRI~KY 749 (1613)
.++|.+|+..++.|+ +|..||+|||.|..+|.+. ..++..|++.........+-|..=|-||..|+-||
T Consensus 174 --------~RVGg~fln~ap~mkt~~~aYcanHP~AV~VL~k~--~dELek~me~Qgasspg~lvLttgLSkPfrrldkY 243 (661)
T KOG2070|consen 174 --------QRVGGCFLNLAPQMKTLYLAYCANHPSAVNVLTKH--SDELEKFMETQGASSPGILVLTTGLSKPFRRLDKY 243 (661)
T ss_pred --------hhhhhHHHhhhHHHHHHHHHHHhcCchhhhHHHHh--HHHHHHHHHhcCCCCCCeEEEecccchHHHHHHHH
Confidence 359999999999999 9999999999999999764 56899999988877777888999999999999999
Q ss_pred HHHHHHHhhcCCCCCcccchhhhHHHHHHhhhcccccccc
Q psy8107 750 PLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIFTTGA 789 (1613)
Q Consensus 750 ~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~~T~g 789 (1613)
+-||++|-++.+..||||..+...+++...+.+.+-.++.
T Consensus 244 ~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRk 283 (661)
T KOG2070|consen 244 PTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRK 283 (661)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988888877776554443
No 21
>KOG3522|consensus
Probab=99.76 E-value=2e-18 Score=212.30 Aligned_cols=231 Identities=22% Similarity=0.374 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy8107 594 LSKVIIELIETERTYVKNLNGLLENYLEPLKKET-FLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSS 672 (1613)
Q Consensus 594 R~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~-iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~~~~~~~~~ 672 (1613)
|++++.+|+++|++||..|+.+++.|++||+... .+.+.+++.||.||+||+++|++||.+|+.+...|...+
T Consensus 1 r~~v~~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~~qq------ 74 (925)
T KOG3522|consen 1 RRYVLLQLIDREQSYVESLHTGVDRYVQPLKERKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWDEQQ------ 74 (925)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHH------
Confidence 5689999999999999999999999999998754 455589999999999999999999999999999987644
Q ss_pred chhhhHhhHHHHHhhhcccc---chhhHHHhchHHHHHHHhhccCChHHHHHHHhhCCCCCCCCCccccccccchhhhch
Q psy8107 673 QFKNILFSIGSAFLYYVNHF---KLYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKY 749 (1613)
Q Consensus 673 ~~~~~i~~IGdvFl~~~~~f---k~Y~~Yc~n~~~a~~~L~~~~~~~~f~~fl~~~~~~~~~~l~L~slLikPVQRI~KY 749 (1613)
.+|+.|.+..... .+|+.||+|..+|.+.++..+ .++|.+|++ +++|| |+++|
T Consensus 75 -------~vga~~v~~fSk~~v~~~Y~~y~nn~~~A~~~l~~~~-rpaf~~Fl~--------------l~~kP--r~P~y 130 (925)
T KOG3522|consen 75 -------KVGASFVYSFSKTAVLAAYSKYVNNFKRAKCALRNKK-RPAFSKFLE--------------LMIKP--RFPRY 130 (925)
T ss_pred -------HHHHHHHHhhhHHHHHHHHHHHHhchhHHHHHHHHhc-chHHHHHHH--------------HHhcc--CCchH
Confidence 4999999887653 599999999999999998866 899999999 89999 99999
Q ss_pred HHHHHHHhhcCCCCCcccchhhhHHHHHHhhhcccccc--------------cchhHHHHHHHHhhchhhHHHHHH--Hh
Q psy8107 750 PLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIFTT--------------GAGEYWLKLFDSFAGTIGLVLIAL--IE 813 (1613)
Q Consensus 750 ~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~~T--------------~gG~yv~eL~D~y~a~~~ll~~al--~E 813 (1613)
.|||+ |+||||.+||||.+|..+...+.-+.-.+|+- +.-.-.-++++-..++--.++... .|
T Consensus 131 ~lll~-mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl~dl~se 209 (925)
T KOG3522|consen 131 ELLLQ-MLKHTPLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAGRRQLLLQDLVSE 209 (925)
T ss_pred HHHHH-HhhcCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHhhh
Confidence 99999 99999999999999999999988888888743 222223345555555544444433 34
Q ss_pred heeEE-------eecCchhHHHHhhhccCCcccc----------cccccccccchhhhh
Q psy8107 814 MLAVM-------FIYGHEKFTNDIYEMTGYKPGW----------YWQITWRFLGPAIMS 855 (1613)
Q Consensus 814 ~i~i~-------WiyG~~rf~~di~~m~G~~~~~----------yWk~cW~fItP~il~ 855 (1613)
+++.. ..|...-++.+++...|+-.+. +|+..|+...+..-.
T Consensus 210 ~vy~~rk~d~~~~~~rd~i~~~~Lk~~sg~~r~~~t~as~vdt~ky~~lw~~~L~~~~v 268 (925)
T KOG3522|consen 210 TVYTGRKKDRKAFLFRDLIVNTDLKRASGSSRKPSTAASVVDTAKYKLLWKDPLVFADV 268 (925)
T ss_pred hhhccccchhhheeeeeeeeeeeeeeeeceecCCccccccccccceeeeeccccchhhe
Confidence 44332 2333334566777777765444 999999988776644
No 22
>KOG3521|consensus
Probab=99.70 E-value=5.4e-17 Score=194.41 Aligned_cols=189 Identities=22% Similarity=0.350 Sum_probs=149.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCHHHHHHHhccHHHHHHHHHHHHHH-HHHHHhcccc
Q psy8107 589 TDAEKLSKVIIELIETERTYVKNLNGLLENYLEPL---KKETFLSGAEINALFGNILEIVAFQRQFLQN-LVEALENEAD 664 (1613)
Q Consensus 589 ~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL---~~~~iL~~~e~~~LF~NIeeIl~~h~~FL~~-Le~~~~~~~~ 664 (1613)
.+.-|.|++|+|||+||-.||+.|+.+.+.|+..| ++.++|-+-+-..||+|+.+|.+.|+.|..+ |+-.++....
T Consensus 173 ~~~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~~~n~slW~~~l~P~laksr~ 252 (846)
T KOG3521|consen 173 DKSCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDVEAERLFSNVPTLFNVNRSLWLQVLEPILAKSRE 252 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33568899999999999999999999888766555 7789999999999999999999999996644 4444444332
Q ss_pred cCCCCCccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhc-cCChHHHHHHHhhCCCC-CCCCCcccccccc
Q psy8107 665 FHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPN-EGNQALQEFLSSRNPRQ-QHSSTLESYLIKP 742 (1613)
Q Consensus 665 ~~~~~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~-~~~~~f~~fl~~~~~~~-~~~l~L~slLikP 742 (1613)
....-++ .-+-.-|+.+...|+.|..||..+..+++.++++ +.|+-|.+|+.+|+..+ +.++.|.|.|++|
T Consensus 253 TgepLd~-------~~lq~GFl~f~s~f~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~RqkL~D~l~kP 325 (846)
T KOG3521|consen 253 TGEPLDP-------NYLQNGFLDFGSWFRPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQKLIDTLSKP 325 (846)
T ss_pred hCCCCCh-------HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHHHHHHhhhH
Confidence 2211111 1255679999999999999999999999999985 88899999999998664 5779999999999
Q ss_pred chhhhchHHHHHHHhhcCCCCCcccchhhhHHHHHHhhhcccc
Q psy8107 743 IQRILKYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIF 785 (1613)
Q Consensus 743 VQRI~KY~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~ 785 (1613)
+|||+||+|||+.++|.|+.. .|...+...+..+.-+++.+|
T Consensus 326 mQRLTKY~LLLkAVlK~t~d~-~e~Eai~aMi~svEsf~~~vN 367 (846)
T KOG3521|consen 326 MQRLTKYPLLLKAVLKVTTDE-REREAISAMIDSVESFTAHVN 367 (846)
T ss_pred HHHhhhhHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998544 455566655555544444444
No 23
>KOG0689|consensus
Probab=99.65 E-value=4.2e-17 Score=196.09 Aligned_cols=177 Identities=32% Similarity=0.521 Sum_probs=150.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCH--HHHHHHhccHHHHHHHHHH-HHHHHHHHHhcc
Q psy8107 586 RQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSG--AEINALFGNILEIVAFQRQ-FLQNLVEALENE 662 (1613)
Q Consensus 586 ~~~~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~iL~~--~e~~~LF~NIeeIl~~h~~-FL~~Le~~~~~~ 662 (1613)
...+...++..++.|++.||+.||++|..+++.|+.++...++-.. +..+.||+|+.+|+++|.. |+.+++.+.+..
T Consensus 55 ~~~~~~~k~~~v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~~lp~~lrg~~~iifgni~~i~~~h~~~fl~e~e~~~r~~ 134 (448)
T KOG0689|consen 55 SEIKALKKRSFVLDELIATEVDYVKDLKSVVENYIELLDAEDLPEDLRGKDKIIFGNIKEIYEFHKKEFLPELERCERDP 134 (448)
T ss_pred cchhhhhhhHHHHHHHHHHHHhhhhccccccccccccccccCCChhccCCceeeechHHHHHHhhcccCcchHHHhhhCH
Confidence 3445566788999999999999999999999999999987653221 3478999999999999999 699999998765
Q ss_pred cccCCCCCccchhhhHhhHHHHHhhhccccc-hhhHHHhchHHHHHHHhhccCChHHHHHHHhhCCCCCCCCCccccccc
Q psy8107 663 ADFHHFDQSSQFKNILFSIGSAFLYYVNHFK-LYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIK 741 (1613)
Q Consensus 663 ~~~~~~~~~~~~~~~i~~IGdvFl~~~~~fk-~Y~~Yc~n~~~a~~~L~~~~~~~~f~~fl~~~~~~~~~~l~L~slLik 741 (1613)
. .+|.+|++|..+|. +|..||.|+++....+. ...+..|+++++.+..++++|.+||+|
T Consensus 135 ~----------------~~~~~f~kh~~k~~~~y~~y~q~kp~s~~~~~----~~~~~~~f~~~~~~~~~~l~l~~~l~k 194 (448)
T KOG0689|consen 135 L----------------ELGQAFAKHERKNSVLYVTYCQNKPKSDYLLA----EYDNEAFFQEYQTQLGHKLDLSSYLIK 194 (448)
T ss_pred H----------------HHHHHHHHHHHHhhhhhhhhhcCCCCCcccce----ecccchhhHHHhhhcccccccchhhhh
Confidence 4 39999999999999 99999999999854442 233467888888899999999999999
Q ss_pred cchhhhchHHHHHHHhhcCCCCCcccchhhhHHHHHHhhhc
Q psy8107 742 PIQRILKYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVG 782 (1613)
Q Consensus 742 PVQRI~KY~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLig 782 (1613)
||||+.||+|||++++|.+.....|...+..+.+++.+..-
T Consensus 195 PiQR~~kYqlLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~ 235 (448)
T KOG0689|consen 195 PVQRIMKYQLLLQDFLKFCEKAGDDTDALCKAEEVMRFVLK 235 (448)
T ss_pred hhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888877777776654
No 24
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.64 E-value=9.9e-16 Score=152.80 Aligned_cols=100 Identities=28% Similarity=0.439 Sum_probs=81.8
Q ss_pred cceEEeccc---ccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcC
Q psy8107 5 KKWLLRKKH---QIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTA 81 (1613)
Q Consensus 5 Kg~L~~K~~---k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~ 81 (1613)
.|+|.||.. ....+..|.|+++||||+|+.|+||||+....... ....+|++.++.++.+.+|+||+|||+|+++
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~--~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~ 79 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENV--HGEPPVDLTGAQCEVASDYTKKKHVFRLRLP 79 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCC--CCCCcEeccCCEEEecCCcccCceEEEEEec
Confidence 578888754 11124578899999999999999999986432111 2223799999999999999999999999999
Q ss_pred CCCeEEeecCCHHHHHHHHHHHHHH
Q psy8107 82 FGDAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 82 dg~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
+|.+|+|||+|++||+.||++|+.+
T Consensus 80 ~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 80 DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999853
No 25
>KOG4240|consensus
Probab=99.63 E-value=2.8e-16 Score=200.08 Aligned_cols=162 Identities=31% Similarity=0.559 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------CCCCHHHHHHHhccHHHHHHHHHH-HHHHHHHHHhccc
Q psy8107 591 AEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKE------TFLSGAEINALFGNILEIVAFQRQ-FLQNLVEALENEA 663 (1613)
Q Consensus 591 ~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~------~iL~~~e~~~LF~NIeeIl~~h~~-FL~~Le~~~~~~~ 663 (1613)
+.+++.++.||+.||+.||++|....+.|+..+... +.|. ....||+|+++|++||.+ ||.+|+.+-..|.
T Consensus 630 arl~~~~m~ellqterayv~~L~~~l~~y~~e~d~~~~~i~~~~Ln--k~~~ifgnmeeiy~fhn~~~L~eLe~y~~~pE 707 (1025)
T KOG4240|consen 630 ARLKRHVMRELLQTERAYVRDLEECLEGYLAEMDSPMKEILPPLLN--KKEIIFGNMEEIYEFHNDIFLSELEKYEQLPE 707 (1025)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccccccc--hHHHHHhhHHHHHHHHhhHHHHHhhhhccCHH
Confidence 344578999999999999999999999999988643 2344 778999999999999998 9999999977665
Q ss_pred ccCCCCCccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhccCChHHHHHHHhhCCCCCCCCCccccccccc
Q psy8107 664 DFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPI 743 (1613)
Q Consensus 664 ~~~~~~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~~~~~~f~~fl~~~~~~~~~~l~L~slLikPV 743 (1613)
+ +|++|+.+++.|.+|..||.|.+.+..+....... .|+.+++.+....+++.+||++||
T Consensus 708 ~----------------Vg~~fle~~d~fqly~~Yc~nke~S~ql~~~~a~~----~ff~e~qr~~~l~l~~~S~l~kpv 767 (1025)
T KOG4240|consen 708 D----------------VGHCFLERADDFQLYAKYCQNKELSNQLIRLHAGC----SFFQEIQRRHGLELSISSYLIKPV 767 (1025)
T ss_pred H----------------HHHHHHHHHHHHHHHHHHHhCCcchHHHHHhcccc----cccHHHHHHhhhhhhhHHHHhHHH
Confidence 3 99999999999999999999999999988765444 355666666666679999999999
Q ss_pred hhhhchHHHHHHHhhcCCCCCcccchhhhHH
Q psy8107 744 QRILKYPLLLQQLCNLTDPHCDEHLHLVGVV 774 (1613)
Q Consensus 744 QRI~KY~LLLkeLLK~T~~dh~Eh~hL~~al 774 (1613)
|||+||.|||+++++...+...++.....++
T Consensus 768 qritkYqlllkell~~c~e~~~~lkd~l~~m 798 (1025)
T KOG4240|consen 768 QRITKYQLLLKELLKCCCEGTGDLKDALEVM 798 (1025)
T ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Confidence 9999999999999997666666665544333
No 26
>KOG3660|consensus
Probab=99.59 E-value=6.9e-16 Score=194.48 Aligned_cols=130 Identities=35% Similarity=0.767 Sum_probs=111.0
Q ss_pred CcccchhhhHHHHHHhhhcccccccchhHHHHHHHHhhchhhHHHHHHHhheeEEeecCchhHHHHhhhccC-Ccccccc
Q psy8107 764 CDEHLHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTG-YKPGWYW 842 (1613)
Q Consensus 764 h~Eh~hL~~alclv~fLigLI~~T~gG~yv~eL~D~y~a~~~ll~~al~E~i~i~WiyG~~rf~~di~~m~G-~~~~~yW 842 (1613)
...+..++..+|++.+++|++++|++|.||++++|+|++++.+++++++|+++|+|+||.+||++||++|+| .+++.||
T Consensus 419 ~~~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i~wiYG~~~~~~di~~M~g~~~~~~~~ 498 (629)
T KOG3660|consen 419 RNRRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAIAWVYGADRFRDDIHEMIGCGRPSPYW 498 (629)
T ss_pred cccchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHHhheecccchHhhHHHHhCCCCCCHHH
Confidence 334677888999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccccchhhhhHHhhhheeee---ccC-CCcccccccchhHhHHHHHh-hhcchhh
Q psy8107 843 QITWRFLGPAIMSCILVSSIICR---FLK-KPSYSAWNRAFLIPFMVMLI-LEGIPLF 895 (1613)
Q Consensus 843 k~cW~fItP~il~~I~i~~ii~~---~~~-~P~Y~~~g~~FLIpYli~l~-liGlPll 895 (1613)
+.||+|++|++++.+++++.+.. .++ .|.||.|+- .+.+++++. ++-+|+.
T Consensus 499 ~~~W~f~tP~~~~~i~v~s~~~~~p~~y~~~~~yP~w~~--~~Gw~~a~~~~~~iP~~ 554 (629)
T KOG3660|consen 499 KLCWKFVTPILLLGILVFSLVKYYPLKYNKVYVYPPWGD--IVGWLVALSPLLVIPLY 554 (629)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCccCCcCCCCccHHH--HHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764 234 667888875 344444433 3334443
No 27
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.56 E-value=4.5e-15 Score=182.10 Aligned_cols=186 Identities=26% Similarity=0.410 Sum_probs=165.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCH----HHHHHHhccHHHHHHHHHHHHHHHHHHHhccc
Q psy8107 588 LTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSG----AEINALFGNILEIVAFQRQFLQNLVEALENEA 663 (1613)
Q Consensus 588 ~~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~iL~~----~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~ 663 (1613)
..++.|||++|.|++-||++||++|+.+.+.|++||....+++. +-++-+|.|+-+|+.++.+|+++|..+....
T Consensus 479 ~~qe~kRqe~I~evi~ter~FVk~le~lRD~~~K~L~~sn~Ip~n~r~~Fik~vf~~i~~i~avn~k~~~AL~~rQ~ls- 557 (1175)
T COG5422 479 PKQEIKRQEAIYEVIYTERDFVKDLEYLRDTWIKPLEESNIIPENARRNFIKHVFANINEIYAVNSKLLKALTNRQCLS- 557 (1175)
T ss_pred cHHHHhhhhhhhheeeeccchhhhhHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhccccc-
Confidence 35577999999999999999999999999999999999888877 4567899999999999999999998876543
Q ss_pred ccCCCCCccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhh-ccCChHHHHHHHhhCCC-CCCCCCccccccc
Q psy8107 664 DFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHP-NEGNQALQEFLSSRNPR-QQHSSTLESYLIK 741 (1613)
Q Consensus 664 ~~~~~~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~-~~~~~~f~~fl~~~~~~-~~~~l~L~slLik 741 (1613)
+++..|||+|+++.+.|+.+..|.++.+.+....++ ...|+.|..|..+.+.- ...++-++.||-+
T Consensus 558 ------------Piv~~I~DifL~~vP~Fepfiky~a~~~yaky~~erekS~np~fa~Fd~~v~rl~~s~k~~ld~yLtk 625 (1175)
T COG5422 558 ------------PIVNGIADIFLDYVPKFEPFIKYGASQPYAKYEFEREKSVNPNFARFDHEVERLDESRKLELDGYLTK 625 (1175)
T ss_pred ------------ccccchHHHHHhhhhhhhHHHHhhcccchhheeeeeccccCcchhhhhHHHHhcchhhhhcccceecC
Confidence 345569999999999999999999999999988877 57889999999886633 3456789999999
Q ss_pred cchhhhchHHHHHHHhhcCCCCCcccchhhhHHHHHHhhhccccc
Q psy8107 742 PIQRILKYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIFT 786 (1613)
Q Consensus 742 PVQRI~KY~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~~ 786 (1613)
|+-|+.||+||+++++|+|++|.+|.+.+-.++.++..++..++.
T Consensus 626 ~~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~ 670 (1175)
T COG5422 626 PTTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNF 670 (1175)
T ss_pred CcccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999888887663
No 28
>KOG3531|consensus
Probab=99.51 E-value=1.3e-14 Score=177.80 Aligned_cols=182 Identities=22% Similarity=0.348 Sum_probs=161.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccc
Q psy8107 585 SRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEAD 664 (1613)
Q Consensus 585 ~~~~~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~ 664 (1613)
++..-+.++-..+++||..|||+|.+||+++..+|...+.+++.++...+..+|.|++.+.++|+.||+++|+++..|+.
T Consensus 525 rr~~~ptd~vyF~~kel~~tERty~kdleV~tt~Frst~v~~dam~~~~~s~l~~~~~pl~k~h~~fLk~ieeria~weG 604 (1036)
T KOG3531|consen 525 RRKRRPTDNVYFIVKELSDTERTYLKDLEVITTWFRSTVVKEDAMPNALKSLLFHNSTPLTKFHEGFLKEIEERIALWEG 604 (1036)
T ss_pred ccccCCCCcceeeecccccccccchhccceeeeeecceeecCcccccchhhhhccCCChhhHHHHHHHHHHHHHHHhccC
Confidence 33344455566799999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred cCCCCCccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhh-ccCChHHHHHHHhhCCCCCCCCCccccccccc
Q psy8107 665 FHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHP-NEGNQALQEFLSSRNPRQQHSSTLESYLIKPI 743 (1613)
Q Consensus 665 ~~~~~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~-~~~~~~f~~fl~~~~~~~~~~l~L~slLikPV 743 (1613)
.. ..+.. .-.+|||+.++++..+++|..|...|......+.. .+...+|.+++++.+.++.|.++++.||.+|+
T Consensus 605 rs----nani~-~~~~igDVmLk~m~~l~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v~kefelqkvcyLP~~~fllkpL 679 (1036)
T KOG3531|consen 605 RS----NANIV-IEQRIGDVMLKNMRSLKITTTTTQRHAETLTTLTTTSKVLTRLEAVYKEFELQKVCYLPLNTFLLKPL 679 (1036)
T ss_pred CC----CCcee-eeeccCCcchhhhhccchhhhhHHhHHHHHHHHhhcchhhhhHHhhhccHHhhhccccccchhhhccc
Confidence 33 23333 23569999999999999999999999999999988 48888999999999999999999999999999
Q ss_pred hhhhchHHHHHHHhhcCCCCCcccchhh
Q psy8107 744 QRILKYPLLLQQLCNLTDPHCDEHLHLV 771 (1613)
Q Consensus 744 QRI~KY~LLLkeLLK~T~~dh~Eh~hL~ 771 (1613)
+|+..|.++|+.|..+..++|.++....
T Consensus 680 ~rllhyq~~LeRLc~~~~~~h~d~ad~~ 707 (1036)
T KOG3531|consen 680 SRLLHYQLALERLCGHYSPTHEDFADCK 707 (1036)
T ss_pred cHHHHHHHHHHHhhcccCCCccchHHHh
Confidence 9999999999999999999998875443
No 29
>KOG3659|consensus
Probab=99.45 E-value=2.5e-14 Score=173.80 Aligned_cols=110 Identities=34% Similarity=0.751 Sum_probs=100.4
Q ss_pred cchhhhHHHHHHhhhcccccccchhHHHHHHHHhhchhhHHHHHHHhheeEEeecCchhHHHHhhhccCCcccccccccc
Q psy8107 767 HLHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYKPGWYWQITW 846 (1613)
Q Consensus 767 h~hL~~alclv~fLigLI~~T~gG~yv~eL~D~y~a~~~ll~~al~E~i~i~WiyG~~rf~~di~~m~G~~~~~yWk~cW 846 (1613)
..+++..+|+..+++++.+++.+|.|++++++.|+.++.+++.+++|+++|+|+||.+||..|++.|+|++|++||+.||
T Consensus 464 ~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~Mlg~~P~~yw~v~w 543 (629)
T KOG3659|consen 464 RELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSWVYGVRRFSADVKQMLGFRPGWYWRVCW 543 (629)
T ss_pred HHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhCCCCchhHHHHH
Confidence 34677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHhhhheeee---ccCCCcccccc
Q psy8107 847 RFLGPAIMSCILVSSIICR---FLKKPSYSAWN 876 (1613)
Q Consensus 847 ~fItP~il~~I~i~~ii~~---~~~~P~Y~~~g 876 (1613)
+.++|++++++++..+... ....+.||+|+
T Consensus 544 ~~vsp~~ll~if~~~~~~~~~~~~~~y~yp~Wa 576 (629)
T KOG3659|consen 544 PCVSPVFLLFIFVFSLRNFSPIQVVIYAYPDWA 576 (629)
T ss_pred hhhhHHHHHHHHHHHHhccccceEEeecCCchH
Confidence 9999999999999988762 22345678876
No 30
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.43 E-value=5.5e-13 Score=131.16 Aligned_cols=95 Identities=28% Similarity=0.558 Sum_probs=81.5
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFG 83 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg 83 (1613)
..|||.+|..+.+ +..+.|++.||||+|+.|++||++. ...|.+.|.|.++.++.+.+. +|+|+|++.+++.
T Consensus 2 ~~GwL~kk~~~~g-~~~k~WkkrwfvL~~~~L~yyk~~~------~~~~~~~I~L~~~~v~~~~~~-~k~~~F~I~~~~~ 73 (96)
T cd01260 2 CDGWLWKRKKPGG-FMGQKWARRWFVLKGTTLYWYRSKQ------DEKAEGLIFLSGFTIESAKEV-KKKYAFKVCHPVY 73 (96)
T ss_pred ceeEEEEecCCCC-ccccCceeEEEEEECCEEEEECCCC------CCccceEEEccCCEEEEchhc-CCceEEEECCCCC
Confidence 4699999876533 2567899999999999999999984 345778999999988877665 5899999999998
Q ss_pred CeEEeecCCHHHHHHHHHHHHHH
Q psy8107 84 DAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 84 ~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
+.|+|+|+|++|++.||++|+.|
T Consensus 74 ~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 74 KSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHHhC
Confidence 99999999999999999999865
No 31
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.32 E-value=9.3e-12 Score=118.48 Aligned_cols=80 Identities=26% Similarity=0.370 Sum_probs=69.5
Q ss_pred EEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC-C
Q psy8107 358 QVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE-L 436 (1613)
Q Consensus 358 ~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~-~ 436 (1613)
+|++.|+ ..++|||++.. ..+.. ..++||++|.|+|+|+++||++||+|++|||+++.+++++++.++++++ .
T Consensus 1 ~v~l~k~-~~~~lG~~l~~--~~~~~---~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~ 74 (81)
T PF00595_consen 1 QVTLEKS-GNGPLGFTLRG--GSDND---EKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASN 74 (81)
T ss_dssp EEEEEES-TTSBSSEEEEE--ESTSS---SEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTS
T ss_pred CEEEEeC-CCCCcCEEEEe--cCCCC---cCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCC
Confidence 6899998 45999999999 22111 2579999999999999999999999999999999999999999999776 5
Q ss_pred eEEEEEe
Q psy8107 437 SLCMMMR 443 (1613)
Q Consensus 437 ~l~L~vr 443 (1613)
.++|+|+
T Consensus 75 ~v~L~V~ 81 (81)
T PF00595_consen 75 PVTLTVQ 81 (81)
T ss_dssp EEEEEEE
T ss_pred cEEEEEC
Confidence 8888874
No 32
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=99.29 E-value=4.1e-12 Score=117.81 Aligned_cols=72 Identities=26% Similarity=0.231 Sum_probs=65.0
Q ss_pred eEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccceeeeeeecccccccccCCCchhhHHHhhhccceeeeccc
Q psy8107 276 SVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREMEDHNYFVPPRGDLIETYLSTHEVVEVCAK 354 (1613)
Q Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~iEv~~~ 354 (1613)
.++|+|||||...|.+|||||+.|+|+.+||+|+|+|+.|+|+++...+ +..++.++++..+. ++||||+++
T Consensus 1 ~~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~-----~~~~~~~~d~~~L~--~~El~Ve~~ 72 (72)
T cd01760 1 LCRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDE-----KKPLDLDTDSSSLA--GEELEVEPL 72 (72)
T ss_pred CEEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCC-----cCCcCchhhhhhhc--CCEEEEEeC
Confidence 3689999999999999999999999999999999999999999996644 56788899998885 899999874
No 33
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.28 E-value=1.8e-11 Score=121.58 Aligned_cols=93 Identities=23% Similarity=0.388 Sum_probs=78.1
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCC---CCCCceEEEEc
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEH---PKRDYIFCLST 80 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy---~KK~nVF~L~t 80 (1613)
.+|||.+|+++. ..|++.|+||+++.|++||++.. ..+...|+|.++.++...|- .+|+|+|.+.|
T Consensus 4 k~G~L~Kkg~~~-----k~WkkRwfvL~~~~L~yyk~~~~------~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t 72 (100)
T cd01233 4 KKGYLNFPEETN-----SGWTRRFVVVRRPYLHIYRSDKD------PVERGVINLSTARVEHSEDQAAMVKGPNTFAVCT 72 (100)
T ss_pred eeEEEEeeCCCC-----CCcEEEEEEEECCEEEEEccCCC------ccEeeEEEecccEEEEccchhhhcCCCcEEEEEC
Confidence 478998887752 56999999999999999999743 45678899998888777654 35899999998
Q ss_pred CCCCeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 81 AFGDAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 81 ~dg~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
++ +.|+|||+|++||++||.+|+...+
T Consensus 73 ~~-rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 73 KH-RGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 86 7899999999999999999987654
No 34
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=99.27 E-value=1.3e-12 Score=165.72 Aligned_cols=125 Identities=36% Similarity=0.734 Sum_probs=98.3
Q ss_pred HHHHHhhcCCCCCcccchhhhHHHHHHhhhcccccccchhHHHHHHHHhhchhhHHHHHHHhheeEEeecCchhHHHHhh
Q psy8107 752 LLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIY 831 (1613)
Q Consensus 752 LLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~~T~gG~yv~eL~D~y~a~~~ll~~al~E~i~i~WiyG~~rf~~di~ 831 (1613)
++..+.+.-+.....+..++..+|++.+++++++.|++|.|+++++|+|.+++.+++++++|+++++|+||.+||.+|++
T Consensus 370 iv~~l~d~~~~~~~~r~~~~~~v~~~~~l~gl~~~t~~G~~~~~~~d~~~~~~~l~~~~l~e~i~v~wvyG~~~~~~di~ 449 (523)
T PF00209_consen 370 IVSALMDEFPISRKKRKKVTLIVCLVGFLLGLPFCTQGGIYIFDLLDDYVGSISLLIIALLECIAVGWVYGWDRFREDIN 449 (523)
T ss_dssp HHHHHHHTST----HHHHHHHHHHHHHHHHHHHHHBT---THHHHHHHHTTTHHHHHHHHHHHHHHHTTSTHHHHHHHHH
T ss_pred eeEeeeecCccchhhccceeHHHhhhHeEeccccccccHHHhcchHhhcchhHHHHHHHHHHHHheeccccceehhhhhc
Confidence 34444444444444666778889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcccccccccccccchhhhhHHhhhheeee---ccCCCcccccc
Q psy8107 832 EMTGYKPGWYWQITWRFLGPAIMSCILVSSIICR---FLKKPSYSAWN 876 (1613)
Q Consensus 832 ~m~G~~~~~yWk~cW~fItP~il~~I~i~~ii~~---~~~~P~Y~~~g 876 (1613)
+|.|++++.||+.||+|++|++++++++.+++.. .+..+.||.|.
T Consensus 450 ~~~g~~~~~~w~~~w~~v~Pi~ll~ili~~i~~~~~~~~~~~~yp~w~ 497 (523)
T PF00209_consen 450 EMLGFKPGKFWKFLWKYVTPIILLVILIWSIIDYKPLSYNSYIYPWWA 497 (523)
T ss_dssp TT-SS---THHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSS-TTHHH
T ss_pred ccccccHHHHHHhhEEEeecccccceeeeeEEecCCCCCcceEEhHhe
Confidence 9999999999999999999999999999888754 22345677774
No 35
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.25 E-value=4.9e-11 Score=115.27 Aligned_cols=91 Identities=25% Similarity=0.516 Sum_probs=76.5
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFG 83 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg 83 (1613)
++|||.+|.++ .+.|++.||+|++..|++|+++.... ..+.+.|.|.++.+... .+++|+|++.++++
T Consensus 1 ~~G~L~k~~~~-----~~~W~~r~~vl~~~~L~~~~~~~~~~----~~~~~~i~l~~~~~~~~---~~~~~~F~i~~~~~ 68 (91)
T cd01246 1 VEGWLLKWTNY-----LKGWQKRWFVLDNGLLSYYKNKSSMR----GKPRGTILLSGAVISED---DSDDKCFTIDTGGD 68 (91)
T ss_pred CeEEEEEeccc-----CCCceeeEEEEECCEEEEEecCccCC----CCceEEEEeceEEEEEC---CCCCcEEEEEcCCC
Confidence 47999888654 36799999999999999999985431 35778899999876553 24589999999999
Q ss_pred CeEEeecCCHHHHHHHHHHHHHH
Q psy8107 84 DAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 84 ~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
+.|+|+|+|.+|++.||++|+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999865
No 36
>KOG3606|consensus
Probab=99.22 E-value=6.1e-11 Score=130.71 Aligned_cols=103 Identities=17% Similarity=0.309 Sum_probs=87.5
Q ss_pred eeecccceEEEEEEecCCCCccceEEEE----eecccccccCcceeEEEEecCCChhhhcCCCC-CCEEEEEcCeecCCC
Q psy8107 349 VEVCAKILYQVELQRTTLDHMWGFSVEA----ELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423 (1613)
Q Consensus 349 iEv~~~~~~~v~l~k~~~~~~~GF~v~~----~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~-GDeIl~vNg~~v~~l 423 (1613)
|.|+|+..+.|+|.|.+++...||-++- -|.+. |-+..++||||++.|||+|+..||.+ .||||||||+.|.+.
T Consensus 152 VDivPEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~-GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGK 230 (358)
T KOG3606|consen 152 VDIVPETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPH-GLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGK 230 (358)
T ss_pred ecccchhhhheehhhcCCCCCceEEEecCceEEeccc-cccccCceEEEeecCCccccccceeeecceeEEEcCEEeccc
Confidence 8899999999999999998999994332 11222 34556899999999999999999876 999999999999999
Q ss_pred CHHHHHHHH-hcCCeEEEEEeecCCCCCCC
Q psy8107 424 DMMYLESVL-QEELSLCMMMRSSRTEPPET 452 (1613)
Q Consensus 424 ~~~~~~~ll-~~~~~l~L~vr~~~~~p~~~ 452 (1613)
++++|-++| +.+.+|.++|+..+++.+..
T Consensus 231 TLDQVTDMMvANshNLIiTVkPANQRnnvv 260 (358)
T KOG3606|consen 231 TLDQVTDMMVANSHNLIITVKPANQRNNVV 260 (358)
T ss_pred cHHHHHHHHhhcccceEEEeccccccccee
Confidence 999999999 66699999999888776643
No 37
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.21 E-value=8.8e-11 Score=114.17 Aligned_cols=93 Identities=20% Similarity=0.407 Sum_probs=77.6
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFG 83 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg 83 (1613)
..|||.+|..+. .+.|++.||+|++..|++|+++... ...+...|.+..+.+....+..+++++|.+.+++
T Consensus 1 k~G~L~kk~~~~----~~~W~kr~~~L~~~~l~~y~~~~~~----~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~- 71 (94)
T cd01250 1 KQGYLYKRSSKS----NKEWKKRWFVLKNGQLTYHHRLKDY----DNAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPT- 71 (94)
T ss_pred CcceEEEECCCc----CCCceEEEEEEeCCeEEEEcCCccc----ccccceEEeccceEEecCccccCCceEEEEEcCC-
Confidence 368988876542 4789999999999999999998532 2345567899888888887766689999999999
Q ss_pred CeEEeecCCHHHHHHHHHHHHH
Q psy8107 84 DAYLFQAPCQVELENWVNSIHS 105 (1613)
Q Consensus 84 ~~yLFQA~~~~em~~Wi~~I~~ 105 (1613)
..|+|+|+|.+|++.||.+|+.
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 8999999999999999999974
No 38
>KOG3524|consensus
Probab=99.18 E-value=6.5e-11 Score=144.09 Aligned_cols=195 Identities=20% Similarity=0.267 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----cCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcccc
Q psy8107 590 DAEKLSKVIIELIETERTYVKNLNGLLENYLEPLK-----KETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEAD 664 (1613)
Q Consensus 590 ~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~-----~~~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~~ 664 (1613)
...-|-++-.++..||..||.-|+.+++.|..+|. ..+++...++..+|+|+++|...|+...+.|++-...|.+
T Consensus 381 k~s~r~~~~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~e 460 (850)
T KOG3524|consen 381 KLSLRVKFKEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWIE 460 (850)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhHH
Confidence 34456678899999999999999999998888774 4678999999999999999999999999999999998875
Q ss_pred cCCCCCccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhhc-cCChHHHHHHHhhCCCC-CCCCCcccccccc
Q psy8107 665 FHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPN-EGNQALQEFLSSRNPRQ-QHSSTLESYLIKP 742 (1613)
Q Consensus 665 ~~~~~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~~-~~~~~f~~fl~~~~~~~-~~~l~L~slLikP 742 (1613)
.. ...-+.|..|.+-++.....++++ ++++.|.+|++..+..+ +++..|.+++++|
T Consensus 461 ~k----------------------~el~kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirp 518 (850)
T KOG3524|consen 461 AK----------------------EELKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRP 518 (850)
T ss_pred HH----------------------HHHHHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccc
Confidence 21 122357888888888888889888 88999999999887765 4779999999999
Q ss_pred chhhhchHHHHHHHhhcCCCCCcccchhhhHHHHHHhhhccccc----ccchhHHHHHHHHhhchhhHHH
Q psy8107 743 IQRILKYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLIFT----TGAGEYWLKLFDSFAGTIGLVL 808 (1613)
Q Consensus 743 VQRI~KY~LLLkeLLK~T~~dh~Eh~hL~~alclv~fLigLI~~----T~gG~yv~eL~D~y~a~~~ll~ 808 (1613)
|||++-..|||++|.| ..+.++|.++..+.-.+..+.-.|+. |+.-+.+|+.+....+.+.+|.
T Consensus 519 vqrlpsvilllndl~k--~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa~lv 586 (850)
T KOG3524|consen 519 VQRLPSVILLLNDMAK--KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPAILV 586 (850)
T ss_pred hhhhhHHHHHHHHHHh--hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCchhhe
Confidence 9999999999999999 56778899999999999999999985 4555556666655555555544
No 39
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.15 E-value=2.4e-10 Score=118.21 Aligned_cols=94 Identities=20% Similarity=0.558 Sum_probs=79.4
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFG 83 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg 83 (1613)
.+|||.+++++ .+.||+.||||+++.|++||++.. ..+.+.|.|.++.+....+ .+|+++|.+.++++
T Consensus 2 k~G~L~K~~~~-----~~~WkkRwfvL~~~~L~yyk~~~~------~~~~g~I~L~~~~v~~~~~-~~~~~~F~i~~~~~ 69 (125)
T cd01252 2 REGWLLKQGGR-----VKTWKRRWFILTDNCLYYFEYTTD------KEPRGIIPLENVSIREVED-PSKPFCFELFSPSD 69 (125)
T ss_pred cEEEEEEeCCC-----CCCeEeEEEEEECCEEEEEcCCCC------CCceEEEECCCcEEEEccc-CCCCeeEEEECCcc
Confidence 57999876654 267999999999999999998742 3578899999988777755 47889999999887
Q ss_pred --------------------CeEEeecCCHHHHHHHHHHHHHHHHh
Q psy8107 84 --------------------DAYLFQAPCQVELENWVNSIHSACAA 109 (1613)
Q Consensus 84 --------------------~~yLFQA~~~~em~~Wi~~I~~aaa~ 109 (1613)
..|+|+|+|.+|++.||++|+.++..
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999988663
No 40
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.15 E-value=2.1e-10 Score=115.20 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=75.3
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEE-eeCCCCC------CCCceE
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIM-QPIPEHP------KRDYIF 76 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~-~~a~dy~------KK~nVF 76 (1613)
.+|+|++|..-+...++++||+.|+||+++.|++||++... ...+.+.|+|.++.+ +.+.+.. ++++.|
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~----~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F 77 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK----RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPF 77 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc----ccCcceeEECCcceEEEEecCCcCcccccccCccE
Confidence 36888888642223567799999999999999999987432 345788999998754 3344433 468999
Q ss_pred EEEcCCCCeEEeecCCHHHHHHHHHHHHH
Q psy8107 77 CLSTAFGDAYLFQAPCQVELENWVNSIHS 105 (1613)
Q Consensus 77 ~L~t~dg~~yLFQA~~~~em~~Wi~~I~~ 105 (1613)
++.|++ +.|.++|+|++|+++||++|+.
T Consensus 78 ~i~t~~-r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 78 QVVHDE-GTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEEeCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence 999986 5677889999999999999985
No 41
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.15 E-value=2.3e-10 Score=111.56 Aligned_cols=96 Identities=31% Similarity=0.630 Sum_probs=84.1
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCC-----CCCCceEEE
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEH-----PKRDYIFCL 78 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy-----~KK~nVF~L 78 (1613)
..|||.++.+ ..++|++.|+||+++.|++|+++.. .....+...|+|.++.+....+. .+++|+|.+
T Consensus 3 ~~G~L~~~~~-----~~~~wk~r~~vL~~~~L~~~~~~~~---~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i 74 (104)
T PF00169_consen 3 KEGWLLKKSS-----SRKKWKKRYFVLRDSYLLYYKSSKD---KSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEI 74 (104)
T ss_dssp EEEEEEEEES-----SSSSEEEEEEEEETTEEEEESSTTT---TTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEE
T ss_pred EEEEEEEECC-----CCCCeEEEEEEEECCEEEEEecCcc---ccceeeeEEEEecCceEEEcCccccccccCCCcEEEE
Confidence 5799998872 3477999999999999999999854 23467888999999988888776 589999999
Q ss_pred EcCCCCeEEeecCCHHHHHHHHHHHHHHH
Q psy8107 79 STAFGDAYLFQAPCQVELENWVNSIHSAC 107 (1613)
Q Consensus 79 ~t~dg~~yLFQA~~~~em~~Wi~~I~~aa 107 (1613)
.++++..|+|+|+|++|++.|+.+|+.|+
T Consensus 75 ~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 75 TTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999885
No 42
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.13 E-value=3.8e-10 Score=111.21 Aligned_cols=90 Identities=19% Similarity=0.357 Sum_probs=72.7
Q ss_pred cceEEecccccccccCCCceEEEEEEe--CCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCC
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLK--GTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAF 82 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLk--G~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~d 82 (1613)
-|||.+.+++.. .++||+.|+||+ ++.||+||++. +..|.+.|+|.++......+. +++.|.+.|+
T Consensus 2 ~GyL~K~g~~~~---~K~WkkRWFvL~~~~~~L~Yyk~~~------d~~p~G~I~L~~~~~~~~~~~--~~~~F~i~t~- 69 (95)
T cd01265 2 CGYLHKIEGKGP---LRGRRSRWFALDDRTCYLYYYKDSQ------DAKPLGRVDLSGAAFTYDPRE--EKGRFEIHSN- 69 (95)
T ss_pred cccEEEecCCCC---CcCceeEEEEEcCCCcEEEEECCCC------cccccceEECCccEEEcCCCC--CCCEEEEEcC-
Confidence 377777665421 578999999998 56899999874 346889999999776655443 4899999987
Q ss_pred CCeEEeecCCHHHHHHHHHHHHHH
Q psy8107 83 GDAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 83 g~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
.+.|.|+|+|++||+.||++|+.+
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 478999999999999999999875
No 43
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.12 E-value=3.7e-10 Score=111.71 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=76.1
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCC----CCceEEEE
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPK----RDYIFCLS 79 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~K----K~nVF~L~ 79 (1613)
+.|||.+++++- ..-+.|++.|++|+|..|++||+.... ..+.+.|+|.+|......+-.+ ++|.|.+.
T Consensus 2 ~~G~l~k~~g~~--r~~K~WkrRwF~L~~~~L~y~K~~~~~-----~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~ 74 (101)
T cd01264 2 IEGQLKEKKGRW--RFIKRWKTRYFTLSGAQLLFQKGKSKD-----DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIF 74 (101)
T ss_pred cceEEeecCccc--eeeecceeEEEEEeCCEEEEEeccCcc-----CCCCceEEcccceEEeeccccccccccCcEEEEE
Confidence 468888887742 123679999999999999999987432 2234799999998777654323 36999999
Q ss_pred cCCCCeEEeecCCHHHHHHHHHHHHHH
Q psy8107 80 TAFGDAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 80 t~dg~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
|++ +.|+|||+|++|+++||++|+.|
T Consensus 75 tp~-rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 75 TAD-KTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred cCC-ceEEEEeCCHHHHHHHHHHHHhh
Confidence 999 89999999999999999999876
No 44
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.04 E-value=1.6e-09 Score=105.94 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=74.4
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFG 83 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg 83 (1613)
.+|||.+..+. .++||+.|+||+++.|++||++... ...+.+.|+|++|..... + .+++.|.+.+.++
T Consensus 1 ~~G~L~K~~~~-----~k~Wk~RwFvL~~g~L~Yyk~~~~~----~~~~~G~I~L~~~~i~~~-~--~~~~~F~i~~~~~ 68 (91)
T cd01247 1 TNGVLSKWTNY-----INGWQDRYFVLKEGNLSYYKSEAEK----SHGCRGSIFLKKAIIAAH-E--FDENRFDISVNEN 68 (91)
T ss_pred CceEEEEeccc-----cCCCceEEEEEECCEEEEEecCccC----cCCCcEEEECcccEEEcC-C--CCCCEEEEEeCCC
Confidence 37899888764 2579999999999999999987432 235789999999866543 2 4479999999888
Q ss_pred CeEEeecCCHHHHHHHHHHHHH
Q psy8107 84 DAYLFQAPCQVELENWVNSIHS 105 (1613)
Q Consensus 84 ~~yLFQA~~~~em~~Wi~~I~~ 105 (1613)
+.|.+.|+|++|++.||++|+.
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999974
No 45
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.03 E-value=1.4e-09 Score=108.44 Aligned_cols=94 Identities=17% Similarity=0.318 Sum_probs=75.4
Q ss_pred cceEEecccccc----cccCCCceEEEEEEe-CCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeC-CCCCCCCceEEE
Q psy8107 5 KKWLLRKKHQIE----LARKRGWKGYWVCLK-GTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI-PEHPKRDYIFCL 78 (1613)
Q Consensus 5 Kg~L~~K~~k~~----~~~~R~Wk~~~~vLk-G~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a-~dy~KK~nVF~L 78 (1613)
-|||+.+..-+. ....++||+.|+||+ +..|++|+|+. ....|.+.|+|.+|..... .+.++++|.|.+
T Consensus 2 ~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~-----~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I 76 (104)
T cd01236 2 CGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEM-----PTTLPQGTIDMNQCTDVVDAEARTGQKFSICI 76 (104)
T ss_pred cceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCC-----CCcccceEEEccceEEEeecccccCCccEEEE
Confidence 488888865222 245788999999998 67888888763 2346778999998876664 456677899999
Q ss_pred EcCCCCeEEeecCCHHHHHHHHHHHH
Q psy8107 79 STAFGDAYLFQAPCQVELENWVNSIH 104 (1613)
Q Consensus 79 ~t~dg~~yLFQA~~~~em~~Wi~~I~ 104 (1613)
.|++ +.|+|.|++++|++.||++|+
T Consensus 77 ~tp~-R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 77 LTPD-KEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred ECCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 9997 899999999999999999997
No 46
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.03 E-value=1.8e-09 Score=107.96 Aligned_cols=93 Identities=15% Similarity=0.353 Sum_probs=71.3
Q ss_pred cceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceE----E-eeCC-C-CCCCCceEE
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAI----M-QPIP-E-HPKRDYIFC 77 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~----~-~~a~-d-y~KK~nVF~ 77 (1613)
.|||.+++++. .++||+.|+||++..|++||++.. ..|.+.|.|..+. + ...+ + -.++.+.|.
T Consensus 2 eG~L~K~g~~~----~k~wkkRwFvL~~~~L~Yyk~~~d------~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~ 71 (103)
T cd01251 2 EGFMEKTGPKH----TEGFKKRWFTLDDRRLMYFKDPLD------AFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVT 71 (103)
T ss_pred ceeEEecCCCC----CCCceeEEEEEeCCEEEEECCCCC------cCcCcEEEeeccccceeEeccCCccccccccceEE
Confidence 68998876642 367999999999999999998742 3567788887432 2 1112 2 223345999
Q ss_pred EEcCCCCeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 78 LSTAFGDAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 78 L~t~dg~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
+.|+ .+.|+|+|++++||+.||++|+.|..
T Consensus 72 i~t~-~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 72 LVTP-ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEeC-CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 9998 68999999999999999999998854
No 47
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.01 E-value=1.4e-09 Score=109.71 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=74.3
Q ss_pred cceEEecccccccccCCCceEEEEEEeCCe-------EEEecCCCcCCCCCCCCCCceeEeCceEEeeC-----CCCCCC
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLKGTT-------LLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI-----PEHPKR 72 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~-------L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a-----~dy~KK 72 (1613)
.|||.+++.+.. ..+++||+.|+||++.. |++||++. ...|++.|+|..+..... .+..++
T Consensus 2 eGwL~K~~~~~~-~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~------~~k~~g~I~L~~~~~v~~~~~~~~~~~~~ 74 (108)
T cd01266 2 EGWLKKSPPYKL-LFRTKWVRRYFVLHCGDRERNLFALEYYKTSR------KFKLEFVIDLESCSQVDPGLLCTAGNCIF 74 (108)
T ss_pred ceeeeeCCcccc-ccccCcEEEEEEEeccccCCCcceEEEECCCC------CCccceEEECCccEEEcccccccccCccc
Confidence 699999876433 24578999999999875 69999873 356888999998765433 222356
Q ss_pred CceEEEEcCCCCeEEeecCCHHHHHHHHHHHHHHH
Q psy8107 73 DYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107 (1613)
Q Consensus 73 ~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~~aa 107 (1613)
+++|++.|++ +.|+|+|+|++||+.||++|+..|
T Consensus 75 ~~~f~i~t~~-r~y~l~A~s~ee~~~Wi~~I~~~~ 108 (108)
T cd01266 75 GYGFDIETIV-RDLYLVAKNEEEMTLWVNCICKLC 108 (108)
T ss_pred ceEEEEEeCC-ccEEEEECCHHHHHHHHHHHHhhC
Confidence 7889999875 799999999999999999997653
No 48
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.01 E-value=1.9e-09 Score=107.18 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=69.3
Q ss_pred CCceEEEEEEeCC------eEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHH
Q psy8107 21 RGWKGYWVCLKGT------TLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQV 94 (1613)
Q Consensus 21 R~Wk~~~~vLkG~------~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~ 94 (1613)
+.||+.|+||++. .|.+||++..... ....|...|.|.+|....-..-.|++|+|.|.|+| +.|+|+|++++
T Consensus 12 K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~-~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~d-r~f~l~aese~ 89 (101)
T cd01257 12 KSMHKRFFVLRAESSGGPARLEYYENEKKFLQ-KGSAPKRVIPLESCFNINKRADAKHRHLIALYTRD-EYFAVAAENEA 89 (101)
T ss_pred cCcEeEEEEEecCCCCCCceEEEECChhhccc-cCCCceEEEEccceEEEeeccccccCeEEEEEeCC-ceEEEEeCCHH
Confidence 4699999999988 7999999865422 12568899999999876554335778999999999 69999999999
Q ss_pred HHHHHHHHHHH
Q psy8107 95 ELENWVNSIHS 105 (1613)
Q Consensus 95 em~~Wi~~I~~ 105 (1613)
|+++|+++|+.
T Consensus 90 E~~~Wi~~i~~ 100 (101)
T cd01257 90 EQDSWYQALLE 100 (101)
T ss_pred HHHHHHHHHhh
Confidence 99999999974
No 49
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.97 E-value=1.8e-09 Score=110.60 Aligned_cols=99 Identities=16% Similarity=0.280 Sum_probs=79.0
Q ss_pred ccccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeC----CCCCCCCceEE
Q psy8107 2 LSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI----PEHPKRDYIFC 77 (1613)
Q Consensus 2 L~~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a----~dy~KK~nVF~ 77 (1613)
.+++|||.-...- .+.+.|+++||||+|..|++|+++... ....|.+.|+|.+|..... .|.-.|+|.|.
T Consensus 1 ~~~~GfL~~~q~~---~~~k~W~RRWFvL~g~~L~y~k~p~d~---~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~ 74 (122)
T cd01263 1 VEYHGFLTMFEDT---SGFGAWHRRWCALEGGEIKYWKYPDDE---KRKGPTGLIDLSTCTSSEGASAVRDICARPNTFH 74 (122)
T ss_pred CccceeEEEEecc---CCCCCceEEEEEEeCCEEEEEcCCCcc---ccCCceEEEEhhhCcccccccCChhhcCCCCeEE
Confidence 3789999876543 245789999999999999999977542 2367889999999876655 46679999999
Q ss_pred EEcCCCC----------------e---EEeecCCHHHHHHHHHHHHHH
Q psy8107 78 LSTAFGD----------------A---YLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 78 L~t~dg~----------------~---yLFQA~~~~em~~Wi~~I~~a 106 (1613)
|+.-.+. + |+|.|++++|+++|+.+||.|
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 75 LDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 9764322 2 789999999999999999964
No 50
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.96 E-value=4.5e-09 Score=104.12 Aligned_cols=91 Identities=26% Similarity=0.416 Sum_probs=71.5
Q ss_pred cceEEecccccccccCCCceEEEEEEeC--CeEEEecCCCcCCCCCCCCCCceeEeCceEEee-------CCCCCCCCce
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLKG--TTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQP-------IPEHPKRDYI 75 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG--~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~-------a~dy~KK~nV 75 (1613)
.|||.+++++ .+.||+.|+||++ ..|++|+++. ...|++.|+|..+.... ++++..+.+.
T Consensus 2 ~G~L~K~g~~-----~k~WkkRwFvL~~~~~~L~Yy~~~~------~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~ 70 (101)
T cd01235 2 EGYLYKRGAL-----LKGWKPRWFVLDPDKHQLRYYDDFE------DTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGF 70 (101)
T ss_pred eEEEEEcCCC-----CCCccceEEEEECCCCEEEEecCCC------CCccceEEEcceeEEEeecCCCCCCCCCCCCceE
Confidence 5899988764 3679999999994 4999999873 35677899999764332 1334457788
Q ss_pred EEEEcCCCCeEEeecCCHHHHHHHHHHHHHHH
Q psy8107 76 FCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107 (1613)
Q Consensus 76 F~L~t~dg~~yLFQA~~~~em~~Wi~~I~~aa 107 (1613)
|.+.+. .+.|+|+|++.+|++.||++|+.++
T Consensus 71 f~i~t~-~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 71 FDLKTS-KRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEeC-CceEEEECCCHHHHHHHHHHHHhhC
Confidence 999875 5899999999999999999998753
No 51
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=98.93 E-value=1.1e-09 Score=101.97 Aligned_cols=61 Identities=30% Similarity=0.488 Sum_probs=51.1
Q ss_pred eEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccceeee---eeecccccccccCCCch
Q psy8107 276 SVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRV---KKRREMEDHNYFVPPRG 336 (1613)
Q Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~~~---~~~~~~~~~~~~~p~~~ 336 (1613)
.+||+|||||++.|.+|||+|+.|+|+.+||+|+|+|..|++++ ++..+.+....++|.++
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~L~~~E 65 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSSLPGEE 65 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGGGTTSE
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceeeecCCE
Confidence 57999999999999999999999999999999999999999994 77777776777788843
No 52
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.91 E-value=6.9e-09 Score=102.62 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=71.1
Q ss_pred eEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCC--CCCCceEEEEcCCCC
Q psy8107 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEH--PKRDYIFCLSTAFGD 84 (1613)
Q Consensus 7 ~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy--~KK~nVF~L~t~dg~ 84 (1613)
.++.|+.+..+...++||+.|++|.+..|++||++. ..|.+.|+|.+..+....+. .+++|+|++-|++ +
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt~~~L~Y~k~~~-------~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r 76 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLTTTHLSWAKDVQ-------CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED-D 76 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEECCCEEEEECCCC-------CceeeeEEccceEEEEEcCCcccCCCceEEEEeCC-C
Confidence 344444433333347999999999999999999763 36788999998877655332 3457999999987 5
Q ss_pred eEEeecCCHHHHHHHHHHHHH
Q psy8107 85 AYLFQAPCQVELENWVNSIHS 105 (1613)
Q Consensus 85 ~yLFQA~~~~em~~Wi~~I~~ 105 (1613)
.|++||+|++|+++||++|+.
T Consensus 77 ~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 77 TMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 899999999999999999975
No 53
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.87 E-value=2e-08 Score=96.31 Aligned_cols=98 Identities=31% Similarity=0.546 Sum_probs=81.8
Q ss_pred cccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCC--CCCceEEEEc
Q psy8107 3 SVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHP--KRDYIFCLST 80 (1613)
Q Consensus 3 ~~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~--KK~nVF~L~t 80 (1613)
...|+|.++... ....|+++|++|.+..|++|+++.... ...+...|+|.++.+....+.. ..+++|.|.+
T Consensus 2 ~~~G~l~~~~~~----~~~~~~~~~~~L~~~~l~~~~~~~~~~---~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~ 74 (102)
T smart00233 2 IKEGWLYKKSGG----KKKSWKKRYFVLFNSTLLYYKSEKAKK---DYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKT 74 (102)
T ss_pred ceeEEEEEeCCC----ccCCceEEEEEEECCEEEEEeCCCccc---cCCCceEEECCcCEEEeCCCCccCCCceEEEEEe
Confidence 467898887653 346799999999999999999885422 1567789999999777776653 5789999999
Q ss_pred CCCCeEEeecCCHHHHHHHHHHHHHHH
Q psy8107 81 AFGDAYLFQAPCQVELENWVNSIHSAC 107 (1613)
Q Consensus 81 ~dg~~yLFQA~~~~em~~Wi~~I~~aa 107 (1613)
.++..|+|+|+|++|++.|+.+|+.++
T Consensus 75 ~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 75 ADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred cCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
No 54
>KOG3550|consensus
Probab=98.85 E-value=4.7e-09 Score=107.01 Aligned_cols=81 Identities=27% Similarity=0.367 Sum_probs=72.4
Q ss_pred ceEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhh-cCCCCCCEEEEEcCeecCCCCHHHHHHHHh
Q psy8107 355 ILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMH-NGLIKGDEIMVINGAIVSDLDMMYLESVLQ 433 (1613)
Q Consensus 355 ~~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~-~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~ 433 (1613)
-.+.|+|-|++ .|.||+|-+ |.++.+.+|||++.|||.|+| .||+-||++|.|||.+|++..|+..++||+
T Consensus 90 hprvvelpktd--eglgfnvmg------gkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellk 161 (207)
T KOG3550|consen 90 HPRVVELPKTD--EGLGFNVMG------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLK 161 (207)
T ss_pred CCceeecCccc--cccceeecc------CcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHH
Confidence 35789998887 799999999 677778899999999999977 689999999999999999999999999997
Q ss_pred cC-CeEEEEEe
Q psy8107 434 EE-LSLCMMMR 443 (1613)
Q Consensus 434 ~~-~~l~L~vr 443 (1613)
.. .++.|.||
T Consensus 162 aa~gsvklvvr 172 (207)
T KOG3550|consen 162 AAVGSVKLVVR 172 (207)
T ss_pred HhcCcEEEEEe
Confidence 55 77888876
No 55
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.85 E-value=1.7e-08 Score=95.64 Aligned_cols=79 Identities=27% Similarity=0.339 Sum_probs=66.4
Q ss_pred EEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC-
Q psy8107 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE- 435 (1613)
Q Consensus 357 ~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~- 435 (1613)
+.+++.|.. .+.+||.+.. .. ....+++|.+|.++|+|.++||++||+|+.|||+++.+++++++.++++..
T Consensus 2 ~~~~l~~~~-~~~~G~~~~~--~~----~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~ 74 (82)
T cd00992 2 RTVTLRKDP-GGGLGFSLRG--GK----DSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSG 74 (82)
T ss_pred EEEEEEeCC-CCCcCEEEeC--cc----cCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCC
Confidence 568888886 4899999987 21 112468999999999999999999999999999999999999999999765
Q ss_pred CeEEEEE
Q psy8107 436 LSLCMMM 442 (1613)
Q Consensus 436 ~~l~L~v 442 (1613)
..+.|.+
T Consensus 75 ~~v~l~v 81 (82)
T cd00992 75 DEVTLTV 81 (82)
T ss_pred CeEEEEE
Confidence 4666665
No 56
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.75 E-value=5e-08 Score=92.62 Aligned_cols=95 Identities=33% Similarity=0.615 Sum_probs=80.0
Q ss_pred cceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCC
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGD 84 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~ 84 (1613)
+|+|.++.... .+.|++.|++|.+..|++|++..... ...+...|+|.++.+....+..+++++|.|.+.++.
T Consensus 2 ~G~l~~~~~~~----~~~w~~~~~~L~~~~l~~~~~~~~~~---~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~ 74 (96)
T cd00821 2 EGYLLKKTGKL----RKGWKRRWFVLFNDLLLYYKKKSSKK---SYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDGR 74 (96)
T ss_pred cchhhhhhChh----hCCccEEEEEEECCEEEEEECCCCCc---CCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCCc
Confidence 57777775532 46799999999999999998875421 356778999999888888777778999999999999
Q ss_pred eEEeecCCHHHHHHHHHHHHHH
Q psy8107 85 AYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 85 ~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
.|+|+|+|++|++.|+.+|+.+
T Consensus 75 ~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 75 SYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred EEEEEeCCHHHHHHHHHHHhcC
Confidence 9999999999999999999753
No 57
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.74 E-value=4.3e-08 Score=96.82 Aligned_cols=90 Identities=19% Similarity=0.321 Sum_probs=72.8
Q ss_pred cceEEecccccccccCCCceEEEEEEeC----CeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCC-CCCCceEEEE
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLKG----TTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEH-PKRDYIFCLS 79 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG----~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy-~KK~nVF~L~ 79 (1613)
||||+++.+.. .+.||+.|++|.+ +.|++|++... ..|.+.|.+.++.+....|. -+|+|.|+|.
T Consensus 2 ~G~l~K~g~~~----~K~wK~rwF~l~~~~s~~~l~yf~~~~~------~~p~gli~l~~~~V~~v~ds~~~r~~cFel~ 71 (98)
T cd01245 2 KGNLLKRTKSV----TKLWKTLYFALILDGSRSHESLLSSPKK------TKPIGLIDLSDAYLYPVHDSLFGRPNCFQIV 71 (98)
T ss_pred CCccccCCCCc----ccccceeEEEEecCCCCceEEEEcCCCC------CCccceeeccccEEEEccccccCCCeEEEEe
Confidence 78888664421 3679999999998 99999998743 45667889998866666665 4789999999
Q ss_pred cCCC-CeEEeecCCHHHHHHHHHHHHH
Q psy8107 80 TAFG-DAYLFQAPCQVELENWVNSIHS 105 (1613)
Q Consensus 80 t~dg-~~yLFQA~~~~em~~Wi~~I~~ 105 (1613)
++.+ ..|.+-|++ +|++.||++|..
T Consensus 72 ~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 72 ERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred cCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 9987 889888888 999999999974
No 58
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.72 E-value=9.5e-08 Score=90.78 Aligned_cols=81 Identities=26% Similarity=0.281 Sum_probs=67.3
Q ss_pred EEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC-
Q psy8107 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE- 435 (1613)
Q Consensus 357 ~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~- 435 (1613)
..+++.|.+ ..+||.+.. .. ....+++|+.|.++|+|+++||++||+|+.|||+++.++++.++...++..
T Consensus 3 ~~~~~~~~~--~~~G~~~~~--~~----~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~ 74 (85)
T smart00228 3 RLVELEKGG--GGLGFSLVG--GK----DEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAG 74 (85)
T ss_pred EEEEEEECC--CcccEEEEC--CC----CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 567888876 899999876 22 111469999999999999999999999999999999999999999888654
Q ss_pred CeEEEEEeec
Q psy8107 436 LSLCMMMRSS 445 (1613)
Q Consensus 436 ~~l~L~vr~~ 445 (1613)
..+.|.+.|.
T Consensus 75 ~~~~l~i~r~ 84 (85)
T smart00228 75 GKVTLTVLRG 84 (85)
T ss_pred CeEEEEEEeC
Confidence 4888888764
No 59
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.69 E-value=7.3e-08 Score=88.83 Aligned_cols=66 Identities=29% Similarity=0.377 Sum_probs=57.5
Q ss_pred ccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC--CeEEEEE
Q psy8107 369 MWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE--LSLCMMM 442 (1613)
Q Consensus 369 ~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~--~~l~L~v 442 (1613)
.+||.+.. .++ .+++|++|.++|+|+++||++||+|+.|||+++.+++++++.+++++. .++.|++
T Consensus 2 ~~G~~~~~--~~~------~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRG--GTE------GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEec--CCC------CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 57998877 221 358999999999999999999999999999999999999999999765 5777776
No 60
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.68 E-value=1.1e-07 Score=95.18 Aligned_cols=95 Identities=18% Similarity=0.323 Sum_probs=64.6
Q ss_pred ccceEEecccccccccCCCceEEEEEEe-CCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLK-GTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAF 82 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLk-G~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~d 82 (1613)
..|||.++++. .+.||+.||+|+ +..|++||++..... ....+-+.+.+..|.+... | ..|+|.|.++..+
T Consensus 3 k~G~L~K~g~~-----~~~Wk~R~f~L~~~~~l~~yk~~~~~~~-~~~i~l~~~~v~~~~~~~~-~-~~~~~~F~i~~~~ 74 (102)
T cd01241 3 KEGWLHKRGEY-----IKTWRPRYFLLKSDGSFIGYKEKPEDGD-PFLPPLNNFSVAECQLMKT-E-RPRPNTFIIRCLQ 74 (102)
T ss_pred EEEEEEeecCC-----CCCCeeEEEEEeCCCeEEEEecCCCccC-ccccccCCeEEeeeeeeec-c-CCCcceEEEEecc
Confidence 46888887653 357999999999 788888888643221 1123334455555544333 3 3677999998333
Q ss_pred CC---eEEeecCCHHHHHHHHHHHHHH
Q psy8107 83 GD---AYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 83 g~---~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
.. +-.|+|++++||++||.+|+.+
T Consensus 75 ~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 11 2267899999999999999876
No 61
>smart00455 RBD Raf-like Ras-binding domain.
Probab=98.58 E-value=3.3e-08 Score=91.83 Aligned_cols=44 Identities=39% Similarity=0.536 Sum_probs=42.5
Q ss_pred EEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccceeeee
Q psy8107 277 VKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVK 320 (1613)
Q Consensus 277 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~~~~ 320 (1613)
+||+|||||.+.|.+|||+|+.|+|+.+||+|+|+|+.|.|++.
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~ 45 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR 45 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc
Confidence 68999999999999999999999999999999999999999984
No 62
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.53 E-value=9e-07 Score=84.65 Aligned_cols=96 Identities=22% Similarity=0.410 Sum_probs=74.9
Q ss_pred cceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCC--
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAF-- 82 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~d-- 82 (1613)
.|+|..+..... .+++.|+++|++|.+..|++|+++....... ..+.+.+..+....+-..++++|.+.+.+
T Consensus 2 ~g~l~~~~~~~~-~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~-----~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDV-SKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP-----GSIPLSEISVEEDPDGSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCcc-ccccCceeeEEEEECCEEEEEEcCCCCcCCC-----CEEEccceEEEECCCCCCCCceEEEECCCCC
Confidence 477777755422 1357899999999999999999985432210 56888877766665544678999999997
Q ss_pred CCeEEeecCCHHHHHHHHHHHHHH
Q psy8107 83 GDAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 83 g~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
...|.|+|++.+|++.|+++|..|
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 999999999999999999999753
No 63
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.51 E-value=5.7e-07 Score=89.29 Aligned_cols=86 Identities=16% Similarity=0.410 Sum_probs=67.5
Q ss_pred cCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCC--C-CeEEeecCCHHH
Q psy8107 19 RKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAF--G-DAYLFQAPCQVE 95 (1613)
Q Consensus 19 ~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~d--g-~~yLFQA~~~~e 95 (1613)
+.++||++|++|+|+.|++||++... ...|...|++.+|.+.....-.++++.|+|-++. | ++|.|.++|++|
T Consensus 16 ~~K~~KrrwF~lk~~~L~YyK~kee~----~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeq 91 (106)
T cd01237 16 TLKGYKQYWFTFRDTSISYYKSKEDS----NGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQ 91 (106)
T ss_pred hhhhheeEEEEEeCCEEEEEccchhc----CCCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHH
Confidence 45789999999999999999987432 2345555666666666665456777999998753 3 689999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8107 96 LENWVNSIHSACA 108 (1613)
Q Consensus 96 m~~Wi~~I~~aaa 108 (1613)
+..|+.+...|+.
T Consensus 92 ya~Wmaa~rlas~ 104 (106)
T cd01237 92 YAKWMAACRLASK 104 (106)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998863
No 64
>KOG3553|consensus
Probab=98.47 E-value=4e-08 Score=94.05 Aligned_cols=77 Identities=22% Similarity=0.301 Sum_probs=63.4
Q ss_pred ccceEEEEeeccccccc-----CcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcCCeEEEEEe
Q psy8107 369 MWGFSVEAELTENAERQ-----DELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLCMMMR 443 (1613)
Q Consensus 369 ~~GF~v~~~~~~~~~~~-----~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~~~l~L~vr 443 (1613)
-.||.+.+-++.+. .+ .-.++||.+|.+||||+.||||.+|.||.|||.+..-++|++.++.++.++-|.|.|-
T Consensus 36 ~~GFkIGGGIDQDp-~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~~vl~mLVa 114 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDP-SKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKEEVLRMLVA 114 (124)
T ss_pred EEEEEeccccCCCc-ccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHhHHHHHHHH
Confidence 47899888443321 11 1267999999999999999999999999999999999999999999987788888776
Q ss_pred ecC
Q psy8107 444 SSR 446 (1613)
Q Consensus 444 ~~~ 446 (1613)
|.+
T Consensus 115 R~~ 117 (124)
T KOG3553|consen 115 RQS 117 (124)
T ss_pred hhc
Confidence 543
No 65
>KOG3209|consensus
Probab=98.43 E-value=5.1e-07 Score=110.72 Aligned_cols=85 Identities=24% Similarity=0.390 Sum_probs=71.3
Q ss_pred cceEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcC-CCCCCEEEEEcCeecCCCCHHHHHHHH
Q psy8107 354 KILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNG-LIKGDEIMVINGAIVSDLDMMYLESVL 432 (1613)
Q Consensus 354 ~~~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~G-L~~GDeIl~vNg~~v~~l~~~~~~~ll 432 (1613)
.+.++|+|.|-. .||||++++ |++..-.+||=++.++|||.+.| +++||+|++|||.+..+++|+....|+
T Consensus 897 ~~~~~VelErG~--kGFGFSiRG------GreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelI 968 (984)
T KOG3209|consen 897 GDLYTVELERGA--KGFGFSIRG------GREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELI 968 (984)
T ss_pred CCeeEEEeeccc--cccceEeec------ccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHH
Confidence 467899999966 899999999 55555569999999999998876 899999999999999999999999999
Q ss_pred hcCCeEEEEEeecC
Q psy8107 433 QEELSLCMMMRSSR 446 (1613)
Q Consensus 433 ~~~~~l~L~vr~~~ 446 (1613)
+.+-...|++.|.+
T Consensus 969 k~gg~~vll~Lr~g 982 (984)
T KOG3209|consen 969 KQGGRRVLLLLRRG 982 (984)
T ss_pred HhCCeEEEEEeccC
Confidence 87744444444444
No 66
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.39 E-value=1.5e-06 Score=83.19 Aligned_cols=70 Identities=24% Similarity=0.212 Sum_probs=54.0
Q ss_pred ccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHh---cCCeEEEEEeec
Q psy8107 369 MWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQ---EELSLCMMMRSS 445 (1613)
Q Consensus 369 ~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~---~~~~l~L~vr~~ 445 (1613)
+.|+.+.. ..+ ..+++|.+|.++|||+++||++||.|+.|||++| -+..++.+.+. .+.++.|++.|.
T Consensus 2 ~lGv~~~~--~~~-----~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R~ 72 (82)
T PF13180_consen 2 GLGVTVQN--LSD-----TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLRD 72 (82)
T ss_dssp E-SEEEEE--CSC-----SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEET
T ss_pred EECeEEEE--ccC-----CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 45777666 221 2469999999999999999999999999999999 45577777763 338999999986
Q ss_pred CC
Q psy8107 446 RT 447 (1613)
Q Consensus 446 ~~ 447 (1613)
+.
T Consensus 73 g~ 74 (82)
T PF13180_consen 73 GE 74 (82)
T ss_dssp TE
T ss_pred CE
Confidence 54
No 67
>KOG3549|consensus
Probab=98.39 E-value=1.7e-06 Score=98.95 Aligned_cols=106 Identities=21% Similarity=0.315 Sum_probs=88.5
Q ss_pred HHHhhhccceeeecc------cceEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcC-CCCCCE
Q psy8107 339 IETYLSTHEVVEVCA------KILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNG-LIKGDE 411 (1613)
Q Consensus 339 ~~~~~~~~~~iEv~~------~~~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~G-L~~GDe 411 (1613)
-.++|...+.--||+ .+-|+|+|.|..- +|+|.++.+ |.+|...+.||++-.+-.|+..| |.+||-
T Consensus 32 tke~L~iQkqdVvcvsG~p~~s~eRtVtirRQ~v-GGlGLSIKG------GaEHn~PvviSkI~kdQaAd~tG~LFvGDA 104 (505)
T KOG3549|consen 32 TKELLSIQKQDVVCVSGPPMESKERTVTIRRQKV-GGLGLSIKG------GAEHNLPVVISKIYKDQAADITGQLFVGDA 104 (505)
T ss_pred HHHHhhhhccceEecCCCCccCCceeEEEEeeec-Ccceeeecc------ccccCccEEeehhhhhhhhhhcCceEeeee
Confidence 344443334344676 4668999999875 999999999 88898999999999999998876 568999
Q ss_pred EEEEcCeecCCCCHHHHHHHHhcC-CeEEEEEeecCCCCCC
Q psy8107 412 IMVINGAIVSDLDMMYLESVLQEE-LSLCMMMRSSRTEPPE 451 (1613)
Q Consensus 412 Il~vNg~~v~~l~~~~~~~ll~~~-~~l~L~vr~~~~~p~~ 451 (1613)
||.|||..|..-.|+|++++|+.+ ..++|+|.--+..|+.
T Consensus 105 ilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~lr~ApaF 145 (505)
T KOG3549|consen 105 ILQVNGIYVTACPHEEVVNILRNAGDEVTLTVKHLRAAPAF 145 (505)
T ss_pred eEEeccEEeecCChHHHHHHHHhcCCEEEEEeHhhhcCcHH
Confidence 999999999999999999999766 8999999877777764
No 68
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.38 E-value=1.4e-06 Score=83.44 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=57.9
Q ss_pred CccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc--CCeEEEEEeec
Q psy8107 368 HMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE--ELSLCMMMRSS 445 (1613)
Q Consensus 368 ~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~--~~~l~L~vr~~ 445 (1613)
++.|+.+.- .. .+++|+.|.++|+|+++||++||+|+.|||.++.+.+++++..+++. +..+.|+++|.
T Consensus 2 ~~lG~~~~~--~~-------~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKY--DD-------GGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEE--cC-------CeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 456777654 11 34899999999999999999999999999999999999999999843 37789998764
No 69
>KOG0517|consensus
Probab=98.36 E-value=1.1e-08 Score=133.97 Aligned_cols=103 Identities=22% Similarity=0.344 Sum_probs=89.3
Q ss_pred ccceEEeccc-----ccccccCCCceEEEEEEeCCeEEEecCCCcCCCC--CCCCCCceeEeCceEEeeCCCCCCCCceE
Q psy8107 4 VKKWLLRKKH-----QIELARKRGWKGYWVCLKGTTLLFYPCDSREGRS--VDAAPKHLIIVDGAIMQPIPEHPKRDYIF 76 (1613)
Q Consensus 4 ~Kg~L~~K~~-----k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~--~~~~p~~~I~l~~~~~~~a~dy~KK~nVF 76 (1613)
..|+|.||.. ++ +..|+|...|++++...|.||||.+....+ .....+.++.++.+.++.+.||.||+|||
T Consensus 2301 ~eG~L~Rk~~~~A~e~k--~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~ 2378 (2473)
T KOG0517|consen 2301 LEGFLYRKHLLGALEIK--ASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVF 2378 (2473)
T ss_pred HHhHHHHHHHHhhhhhh--hhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhh
Confidence 4578877742 22 567999999999999999999999886654 33556678999999999999999999999
Q ss_pred EEEcCCCCeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 77 CLSTAFGDAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 77 ~L~t~dg~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
.|++++|.+|+|||.++++|++|++++..+.+
T Consensus 2379 ~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2379 LLQLPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred hhcCCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776
No 70
>KOG3209|consensus
Probab=98.33 E-value=1.8e-06 Score=106.07 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=73.5
Q ss_pred cceEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcC-CCCCCEEEEEcCeecCCCCHHHHHHHH
Q psy8107 354 KILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNG-LIKGDEIMVINGAIVSDLDMMYLESVL 432 (1613)
Q Consensus 354 ~~~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~G-L~~GDeIl~vNg~~v~~l~~~~~~~ll 432 (1613)
+.-..|.|.|.+ .||||++-+ + .+.+..+||-.|.++|.|++-| |++||||+.|+|.+|.+.+|.++++||
T Consensus 648 dk~ldV~L~rke--sGFGFRiLG--G----~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm 719 (984)
T KOG3209|consen 648 DKELDVFLRRKE--SGFGFRILG--G----DEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLM 719 (984)
T ss_pred ccceeEEEEeec--cccceEEec--C----CCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHH
Confidence 345678888888 799999998 3 3333459999999999998755 999999999999999999999999999
Q ss_pred hc---CCeEEEEEeecCCCCC
Q psy8107 433 QE---ELSLCMMMRSSRTEPP 450 (1613)
Q Consensus 433 ~~---~~~l~L~vr~~~~~p~ 450 (1613)
.. +.-+.|+|||.-..-+
T Consensus 720 ~~AArnghV~LtVRRkv~~~~ 740 (984)
T KOG3209|consen 720 EAAARNGHVNLTVRRKVRTGP 740 (984)
T ss_pred HHHHhcCceEEEEeeeeeecc
Confidence 33 3779999998765444
No 71
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.30 E-value=5.5e-06 Score=82.77 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=75.8
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFG 83 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg 83 (1613)
..|+|.+-.++ .++|+..|+.|-.+.|.+++..... ........+.|+|.++.+... +...++|.|.++..+
T Consensus 4 keG~L~K~~~~-----~~~~k~RyffLFnd~Ll~~~~~~~~-~~~~y~~~~~i~l~~~~v~~~-~~~~~~~~F~I~~~~- 75 (101)
T cd01219 4 KEGSVLKISST-----TEKTEERYLFLFNDLLLYCVPRKMI-GGSKFKVRARIDVSGMQVCEG-DNLERPHSFLVSGKQ- 75 (101)
T ss_pred cceEEEEEecC-----CCCceeEEEEEeCCEEEEEEccccc-CCCcEEEEEEEecccEEEEeC-CCCCcCceEEEecCC-
Confidence 56888765443 3579999999999999888864321 123345667899999877654 345679999999988
Q ss_pred CeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 84 DAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 84 ~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
+.|.++|++++|++.|+.+|+.|+.
T Consensus 76 rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 76 RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999863
No 72
>KOG3542|consensus
Probab=98.26 E-value=1.1e-06 Score=106.74 Aligned_cols=86 Identities=21% Similarity=0.323 Sum_probs=78.7
Q ss_pred cceEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHh
Q psy8107 354 KILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQ 433 (1613)
Q Consensus 354 ~~~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~ 433 (1613)
...++|.|+|..-++..-|++.| |.+.+-++||..|.||+.|.++||+-||+||||||++...++....+++|+
T Consensus 534 AK~RqviLtk~sre~pl~f~L~G------GsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLr 607 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVG------GSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILR 607 (1283)
T ss_pred ccceeEEEecccccCCceeEecc------CccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhc
Confidence 56789999997766888999988 777788999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeec
Q psy8107 434 EELSLCMMMRSS 445 (1613)
Q Consensus 434 ~~~~l~L~vr~~ 445 (1613)
++..|+|+|..+
T Consensus 608 nnthLtltvKtN 619 (1283)
T KOG3542|consen 608 NNTHLTLTVKTN 619 (1283)
T ss_pred CCceEEEEEecc
Confidence 889999998753
No 73
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.14 E-value=1.3e-05 Score=77.75 Aligned_cols=86 Identities=22% Similarity=0.466 Sum_probs=69.8
Q ss_pred ceEEecccccccccCCCceEEEEEE--eCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCC
Q psy8107 6 KWLLRKKHQIELARKRGWKGYWVCL--KGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFG 83 (1613)
Q Consensus 6 g~L~~K~~k~~~~~~R~Wk~~~~vL--kG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg 83 (1613)
|||++|++|. -.+|.+.|+|| ..++|.+|+++... ...+.|+|..|.+... ++..-|-|.+. .
T Consensus 1 G~llKkrr~~----lqG~~kRyFvL~~~~G~LsYy~~~~~~------~~rGsi~v~~a~is~~----~~~~~I~idsg-~ 65 (89)
T PF15409_consen 1 GWLLKKRRKP----LQGWHKRYFVLDFEKGTLSYYRNQNSG------KLRGSIDVSLAVISAN----KKSRRIDIDSG-D 65 (89)
T ss_pred Ccceeecccc----CCCceeEEEEEEcCCcEEEEEecCCCC------eeEeEEEccceEEEec----CCCCEEEEEcC-C
Confidence 7899987764 26799999999 89999999977332 5677899998866553 45567888765 5
Q ss_pred CeEEeecCCHHHHHHHHHHHHHH
Q psy8107 84 DAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 84 ~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
..|.+.|.|++|-+.|+++++.|
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 69999999999999999999865
No 74
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.12 E-value=1.4e-05 Score=82.44 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=59.9
Q ss_pred CceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeC------------CCCCCCCceEEEEcCCCCeEEee
Q psy8107 22 GWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI------------PEHPKRDYIFCLSTAFGDAYLFQ 89 (1613)
Q Consensus 22 ~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a------------~dy~KK~nVF~L~t~dg~~yLFQ 89 (1613)
.|++.|+||+++.|.+|+++.. ..+...|.+...-.... .|.+.+.|-|++.|++ +.|.+-
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~------~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~-R~~~l~ 104 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSS------AQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSN-RSLKLK 104 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCC------CceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCC-cEEEEE
Confidence 6999999999999999998754 23444555543222111 2335778999999987 779999
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy8107 90 APCQVELENWVNSIHSA 106 (1613)
Q Consensus 90 A~~~~em~~Wi~~I~~a 106 (1613)
|+|+.+++.|+++|+.|
T Consensus 105 a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 105 CKSSRKLKQWMASIEDA 121 (121)
T ss_pred eCCHHHHHHHHHHHHhC
Confidence 99999999999999865
No 75
>KOG4407|consensus
Probab=98.12 E-value=2.7e-07 Score=118.23 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=87.9
Q ss_pred CccccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCC--------CCCCCCCceeEeCceEEeeCCCCCCC
Q psy8107 1 FLSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGR--------SVDAAPKHLIIVDGAIMQPIPEHPKR 72 (1613)
Q Consensus 1 ~L~~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~--------~~~~~p~~~I~l~~~~~~~a~dy~KK 72 (1613)
||+++..+-+| .|.+..+.|.||+.|.+|.|+.|++||+...... ...+....++++..|+.++.+..+||
T Consensus 928 Wly~~q~~Skk-Gk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~ysetkr 1006 (1973)
T KOG4407|consen 928 WLYVLQSSSKK-GKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQYSETKR 1006 (1973)
T ss_pred ceeeeeecccC-CcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhhhhhhh
Confidence 55555554444 4445578899999999999999999999876221 11244556899999999999999999
Q ss_pred CceEEEEcCCCCeEEeecCCHHHHHHHHHHHHHHHHh
Q psy8107 73 DYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAA 109 (1613)
Q Consensus 73 ~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~~aaa~ 109 (1613)
.|||||++.|-+++||||+|.++|..|+..+...++.
T Consensus 1007 n~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St~~ 1043 (1973)
T KOG4407|consen 1007 NQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSSTTE 1043 (1973)
T ss_pred hhHHHhHHHHHHhHhhccCccccccchhhhhhhcccc
Confidence 9999999999999999999999999999999665553
No 76
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.10 E-value=1.8e-05 Score=76.67 Aligned_cols=94 Identities=24% Similarity=0.339 Sum_probs=70.5
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceE-EeeCCCCCCCCceEEEEcCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAI-MQPIPEHPKRDYIFCLSTAF 82 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~-~~~a~dy~KK~nVF~L~t~d 82 (1613)
.||||.-..-- ..+.+=|.+|+||+..+||+|||+. +..++..|+|.+.- -+....+.+|+|.|.|-++|
T Consensus 3 rkgwl~~~n~~---~m~ggsK~~WFVLt~~~L~wykd~e------eKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd 73 (110)
T cd01256 3 RKGWLSISNVG---IMKGGSKDYWFVLTSESLSWYKDDE------EKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPD 73 (110)
T ss_pred eeeeEEeeccc---eecCCCcceEEEEecceeeeecccc------cccccceeeccccEEEeecccccCCCcEEEEEcCc
Confidence 47777665331 2234569999999999999999983 44578899998753 34445678999999999998
Q ss_pred CCe-------EEeecCCHHHHHHHHHHHHHH
Q psy8107 83 GDA-------YLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 83 g~~-------yLFQA~~~~em~~Wi~~I~~a 106 (1613)
++. .=+.|++++|+++|-...-.|
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 643 347899999999997665443
No 77
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.08 E-value=1.1e-05 Score=76.81 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=49.2
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc---CCeEEEEEeecC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE---ELSLCMMMRSSR 446 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~---~~~l~L~vr~~~ 446 (1613)
.++.|.+|.++|+|+++||++||+|+.|||+++. +.+++.+++.. +..+.|+++|.+
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 4689999999999999999999999999999998 56788888853 367889988755
No 78
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.06 E-value=1.3e-05 Score=75.85 Aligned_cols=56 Identities=25% Similarity=0.233 Sum_probs=45.8
Q ss_pred eeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcCCeEEEEEeecC
Q psy8107 389 CCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLCMMMRSSR 446 (1613)
Q Consensus 389 ~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~~~l~L~vr~~~ 446 (1613)
++.|++|.++|+|+++||++||+|+.|||+++.+ ..++.+.++.+..+.+++.|.+
T Consensus 13 ~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~~~~~~v~l~v~r~g 68 (80)
T cd00990 13 LGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEYQAGDPVELTVFRDD 68 (80)
T ss_pred cEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhcCCCCEEEEEEEECC
Confidence 4899999999999999999999999999999987 4444444444468888887654
No 79
>KOG0930|consensus
Probab=98.00 E-value=2.4e-05 Score=87.75 Aligned_cols=96 Identities=27% Similarity=0.571 Sum_probs=74.9
Q ss_pred cccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcC-
Q psy8107 3 SVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTA- 81 (1613)
Q Consensus 3 ~~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~- 81 (1613)
+..|||++-+. .+...||+.|++|....||+|.-- .+..|++.|.|.+-..... |-+||+|.|.|-.+
T Consensus 261 dREGWLlKlgg----~rvktWKrRWFiLtdNCLYYFe~t------TDKEPrGIIpLeNlsir~V-edP~kP~cfEly~ps 329 (395)
T KOG0930|consen 261 DREGWLLKLGG----NRVKTWKRRWFILTDNCLYYFEYT------TDKEPRGIIPLENLSIREV-EDPKKPNCFELYIPS 329 (395)
T ss_pred cccceeeeecC----CcccchhheeEEeecceeeeeeec------cCCCCCcceeccccceeec-cCCCCCCeEEEecCC
Confidence 45789987644 234679999999999999998643 3346888999997655555 55699999998443
Q ss_pred -------------CC-------CeEEeecCCHHHHHHHHHHHHHHHHh
Q psy8107 82 -------------FG-------DAYLFQAPCQVELENWVNSIHSACAA 109 (1613)
Q Consensus 82 -------------dg-------~~yLFQA~~~~em~~Wi~~I~~aaa~ 109 (1613)
|| ..|-..|++.+||.+||++|..+++.
T Consensus 330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 33 36999999999999999999988774
No 80
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.99 E-value=2.2e-05 Score=73.97 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=47.8
Q ss_pred eeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC--CeEEEEEeecC
Q psy8107 389 CCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE--LSLCMMMRSSR 446 (1613)
Q Consensus 389 ~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~--~~l~L~vr~~~ 446 (1613)
.+.|++|.++|+|+++||++||+|+.|||+++.+ .+++.++++.. ..+.++++|.+
T Consensus 13 ~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred CcEEEeECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECC
Confidence 3789999999999999999999999999999984 57788887543 67888887654
No 81
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.81 E-value=0.00012 Score=72.93 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=72.9
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFG 83 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg 83 (1613)
..|+|++.-+| ..|+++|+.+....||..+.... . ......+.|+|.+..++...|-.+.+|.|++.++.
T Consensus 4 kEG~L~K~~~k------~~~~R~~FLFnD~LlY~~~~~~~--~-~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~- 73 (99)
T cd01220 4 RQGCLLKLSKK------GLQQRMFFLFSDLLLYTSKSPTD--Q-NSFRILGHLPLRGMLTEESEHEWGVPHCFTIFGGQ- 73 (99)
T ss_pred eEEEEEEEeCC------CCceEEEEEccceEEEEEeecCC--C-ceEEEEEEEEcCceEEeeccCCcCCceeEEEEcCC-
Confidence 35777765443 45889988888888887654311 1 12346778999999888887755789999999764
Q ss_pred CeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 84 DAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 84 ~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
..|.++|++++|++.|+.+|+.|+.
T Consensus 74 ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 74 CAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhh
Confidence 7799999999999999999999864
No 82
>KOG3551|consensus
Probab=97.78 E-value=5.1e-05 Score=88.50 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=75.2
Q ss_pred EEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhc-CCCCCCEEEEEcCeecCCCCHHHHHHHHhcC
Q psy8107 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHN-GLIKGDEIMVINGAIVSDLDMMYLESVLQEE 435 (1613)
Q Consensus 357 ~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~-GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~ 435 (1613)
|.|++.|.+. +|.|+++.+ |++..-.|.||++-+|=.|.+. -|..||-||.|||.+..+.+|+|.++.|+..
T Consensus 86 R~V~V~K~d~-gGLGISIKG------GreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra 158 (506)
T KOG3551|consen 86 RRVRVVKQDA-GGLGISIKG------GRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA 158 (506)
T ss_pred ceeEEEEecC-CcceEEeec------CcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh
Confidence 8999999886 999999999 7777777999999999999775 5899999999999999999999999999655
Q ss_pred -CeEEEEEeecCCCCC
Q psy8107 436 -LSLCMMMRSSRTEPP 450 (1613)
Q Consensus 436 -~~l~L~vr~~~~~p~ 450 (1613)
+.+-|.|+=.+..-+
T Consensus 159 GkeV~levKy~REvtP 174 (506)
T KOG3551|consen 159 GKEVLLEVKYMREVTP 174 (506)
T ss_pred Cceeeeeeeeehhcch
Confidence 788887766555433
No 83
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.75 E-value=9.1e-05 Score=71.45 Aligned_cols=57 Identities=26% Similarity=0.310 Sum_probs=47.3
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc---CCeEEEEEeecC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE---ELSLCMMMRSSR 446 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~---~~~l~L~vr~~~ 446 (1613)
.++.|++|.++|+|+++||++||.|+.|||+++.+ .+++.+++.. +..+.+.+.|.+
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 36899999999999999999999999999999875 4466666643 367888887654
No 84
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.75 E-value=8.8e-05 Score=70.40 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=46.4
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc---CCeEEEEEeecC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE---ELSLCMMMRSSR 446 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~---~~~l~L~vr~~~ 446 (1613)
.++.|..|.++|+|++ ||++||+|+.|||.++.+ .+++.+++.+ +..+.|++.|.+
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECC
Confidence 3589999999999997 899999999999999984 5677777753 367889988754
No 85
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=97.72 E-value=9.8e-05 Score=75.27 Aligned_cols=97 Identities=15% Similarity=0.316 Sum_probs=54.4
Q ss_pred ccceEEecccccccccCCCceEEEEEEe-CCeEEEecCCCcCCC-------CCCCCCCceeEeC--ce-EE--e--eCCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLK-GTTLLFYPCDSREGR-------SVDAAPKHLIIVD--GA-IM--Q--PIPE 68 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLk-G~~L~fyKd~~~~~~-------~~~~~p~~~I~l~--~~-~~--~--~a~d 68 (1613)
.+|+|.++..+- .++||+.|++|. +..|.+||.+..... .........+... .. .. . ...+
T Consensus 1 k~G~l~K~~~~~----~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (112)
T PF15413_consen 1 KEGYLYKWGNKF----GKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFG 76 (112)
T ss_dssp EEEEEEE--TTS-----S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--S
T ss_pred CCceEEEecCCC----CcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCccc
Confidence 368888776661 257999999999 999999999332111 0111111111111 11 11 0 1122
Q ss_pred CCCCCceEEEEcCCCCeEEeecCCHHHHHHHHHHHHHH
Q psy8107 69 HPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 69 y~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
. -...+|.+.|++. .|.|.|++.+|...||.+|..|
T Consensus 77 ~-~~~~~~~i~T~~k-t~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 77 E-IHLKVFSIFTPTK-TFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp S--SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH-
T ss_pred C-cCCCCcEEECCCc-EEEEEECCHHHHHHHHHHHHhC
Confidence 2 3457888999975 7999999999999999999865
No 86
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.71 E-value=0.00011 Score=90.54 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=59.9
Q ss_pred CCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc--CCeEEEEEee
Q psy8107 367 DHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE--ELSLCMMMRS 444 (1613)
Q Consensus 367 ~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~--~~~l~L~vr~ 444 (1613)
..|+|+.+.- .+..+ ....++.|..|.|+|||+++||++||+|+.|||++|.+++..++..++++ +.++.|+|+|
T Consensus 84 ~~GiG~~~~~--~~~~~-~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r 160 (389)
T PLN00049 84 VTGVGLEVGY--PTGSD-GPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRR 160 (389)
T ss_pred ceEEEEEEEE--ccCCC-CccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEE
Confidence 3677777755 22111 11135899999999999999999999999999999999999999988853 3789999886
Q ss_pred c
Q psy8107 445 S 445 (1613)
Q Consensus 445 ~ 445 (1613)
.
T Consensus 161 ~ 161 (389)
T PLN00049 161 G 161 (389)
T ss_pred C
Confidence 4
No 87
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.71 E-value=9.2e-05 Score=89.43 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=58.2
Q ss_pred CccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc--CCeEEEEEeec
Q psy8107 368 HMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE--ELSLCMMMRSS 445 (1613)
Q Consensus 368 ~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~--~~~l~L~vr~~ 445 (1613)
.+.|+.+.- .+ .++.|.+|.++|+|+++||++||+|+.|||++|.+++..++.++++. +.++.|++.|.
T Consensus 51 ~~lG~~~~~--~~-------~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 121 (334)
T TIGR00225 51 EGIGIQVGM--DD-------GEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRA 121 (334)
T ss_pred EEEEEEEEE--EC-------CEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeC
Confidence 567777754 11 24899999999999999999999999999999999998898888843 37889998875
Q ss_pred C
Q psy8107 446 R 446 (1613)
Q Consensus 446 ~ 446 (1613)
+
T Consensus 122 g 122 (334)
T TIGR00225 122 G 122 (334)
T ss_pred C
Confidence 4
No 88
>KOG3651|consensus
Probab=97.70 E-value=0.00011 Score=83.31 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=71.1
Q ss_pred eEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcC-CCCCCEEEEEcCeecCCCCHHHHHHHHhc
Q psy8107 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNG-LIKGDEIMVINGAIVSDLDMMYLESVLQE 434 (1613)
Q Consensus 356 ~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~G-L~~GDeIl~vNg~~v~~l~~~~~~~ll~~ 434 (1613)
+-.|+|+|++. +-.|+++.| |.+.-||+||-+|-++.||.+.| ++.||||+.|||++|.+.+-.++-++++.
T Consensus 5 ~~~v~ltKD~~-nliGISIGG------GapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~ 77 (429)
T KOG3651|consen 5 SETVELTKDEK-NLIGISIGG------GAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQV 77 (429)
T ss_pred cCcEEEeeccc-cceeEEecC------CCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHH
Confidence 45789999885 789999988 88999999999999999998876 77899999999999999999999999976
Q ss_pred C-CeEEEEEe
Q psy8107 435 E-LSLCMMMR 443 (1613)
Q Consensus 435 ~-~~l~L~vr 443 (1613)
. ..+.+..-
T Consensus 78 ~~~eV~IhyN 87 (429)
T KOG3651|consen 78 SLNEVKIHYN 87 (429)
T ss_pred hccceEEEeh
Confidence 5 66666543
No 89
>KOG1892|consensus
Probab=97.67 E-value=0.00019 Score=90.79 Aligned_cols=87 Identities=20% Similarity=0.326 Sum_probs=74.7
Q ss_pred eEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcC-CCCCCEEEEEcCeecCCCCHHHHHHHH-h
Q psy8107 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNG-LIKGDEIMVINGAIVSDLDMMYLESVL-Q 433 (1613)
Q Consensus 356 ~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~G-L~~GDeIl~vNg~~v~~l~~~~~~~ll-~ 433 (1613)
+.+|+|.|. +|-|+++.+ +++-+|+..+|||.+|.+||+|..-| |..||++|.|||++.-|++-+..-.+| +
T Consensus 934 i~~vtL~Kn---nGmGLSIVA---AkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtr 1007 (1629)
T KOG1892|consen 934 IITVTLKKN---NGMGLSIVA---AKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTR 1007 (1629)
T ss_pred eEEEEEecc---CCceEEEEe---eccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhc
Confidence 478999886 578999887 45567788999999999999997755 788999999999999999999999999 5
Q ss_pred cCCeEEEEEeecCCC
Q psy8107 434 EELSLCMMMRSSRTE 448 (1613)
Q Consensus 434 ~~~~l~L~vr~~~~~ 448 (1613)
.+..++|.|+..+..
T Consensus 1008 tg~vV~leVaKqgAi 1022 (1629)
T KOG1892|consen 1008 TGNVVHLEVAKQGAI 1022 (1629)
T ss_pred cCCeEEEehhhhhhH
Confidence 568999999866544
No 90
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.65 E-value=0.00037 Score=70.64 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=67.4
Q ss_pred cccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCce--EE-------eeCCCCCCCC
Q psy8107 3 SVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGA--IM-------QPIPEHPKRD 73 (1613)
Q Consensus 3 ~~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~--~~-------~~a~dy~KK~ 73 (1613)
.++||+--.+.- ..+|+|++.|+||.+.-|+||..+..........+...|++.+. .+ ....+-+.-|
T Consensus 3 ~~EGwvkvP~~~---~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP 79 (122)
T cd01243 3 AYEGHVKIPKPG---GVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIP 79 (122)
T ss_pred cceeeEeccCCC---CcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCC
Confidence 367887544331 11468999999999999999997654332222333334444211 11 1114555668
Q ss_pred ceEEEEcCC------CCeEEeecCCHHHHHHHHHHHHHH
Q psy8107 74 YIFCLSTAF------GDAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 74 nVF~L~t~d------g~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
.+|++.+.. +..-||-|+++.|-+.|+.+++.-
T Consensus 80 ~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 80 CIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred eEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 899997744 578899999999999999998753
No 91
>KOG3580|consensus
Probab=97.63 E-value=0.00021 Score=86.79 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=70.4
Q ss_pred EEEEEEecCCCCccceEEEEeecccccccC----cceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHH
Q psy8107 357 YQVELQRTTLDHMWGFSVEAELTENAERQD----ELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVL 432 (1613)
Q Consensus 357 ~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~----~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll 432 (1613)
++|+|+|++. -|||+.|++ +- +++| ...+.||+|.|||||+ .-|+.||.|.-|||.+.++..|...++.|
T Consensus 10 hTvTL~kdp~-rGFGIAiSG--GR--DnPhf~~getSiViSDVlpGGPAe-G~LQenDrvvMVNGvsMenv~haFAvQqL 83 (1027)
T KOG3580|consen 10 HTVTLQKDPK-RGFGIAISG--GR--DNPHFENGETSIVISDVLPGGPAE-GLLQENDRVVMVNGVSMENVLHAFAVQQL 83 (1027)
T ss_pred heeeeecCCC-CcceeEeec--CC--CCCCccCCceeEEEeeccCCCCcc-cccccCCeEEEEcCcchhhhHHHHHHHHH
Confidence 7899999986 899999998 22 1222 2357899999999997 46899999999999999999999999999
Q ss_pred hcC-CeEEEEEeecCCC
Q psy8107 433 QEE-LSLCMMMRSSRTE 448 (1613)
Q Consensus 433 ~~~-~~l~L~vr~~~~~ 448 (1613)
+.+ +.-.++|+|.+..
T Consensus 84 rksgK~A~ItvkRprkv 100 (1027)
T KOG3580|consen 84 RKSGKVAAITVKRPRKV 100 (1027)
T ss_pred HhhccceeEEeccccee
Confidence 555 7788888876543
No 92
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.0001 Score=90.91 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=61.8
Q ss_pred CCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC--CeEEEEEe
Q psy8107 366 LDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE--LSLCMMMR 443 (1613)
Q Consensus 366 ~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~--~~l~L~vr 443 (1613)
.-+|.|.++.. .+ . ..+.|.++.+|+||+++||++||.|+.|||+++.+++.+++++.|++. .+++|++.
T Consensus 98 ~~~GiG~~i~~--~~-~-----~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~ 169 (406)
T COG0793 98 EFGGIGIELQM--ED-I-----GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTIL 169 (406)
T ss_pred cccceeEEEEE--ec-C-----CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEE
Confidence 33677777766 22 1 237999999999999999999999999999999999999999999765 69999999
Q ss_pred ecC
Q psy8107 444 SSR 446 (1613)
Q Consensus 444 ~~~ 446 (1613)
|.+
T Consensus 170 r~~ 172 (406)
T COG0793 170 RAG 172 (406)
T ss_pred EcC
Confidence 863
No 93
>KOG4269|consensus
Probab=97.59 E-value=0.00025 Score=89.92 Aligned_cols=183 Identities=17% Similarity=0.212 Sum_probs=146.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccc
Q psy8107 589 TDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKK-----ETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEA 663 (1613)
Q Consensus 589 ~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~-----~~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~~ 663 (1613)
+-.+-|+.+.-.++..|..|...++.+. .=++|++. .+.++....+.||..+.+|+++|..|...|....+.|.
T Consensus 328 k~~~~rkl~dS~f~~~d~~~~~s~d~l~-l~~~p~~al~~tsqp~~~~~~~~t~~~k~s~i~~~hk~~~~~l~pk~q~~~ 406 (1112)
T KOG4269|consen 328 KGLEMRKLVDSGFLASDEHYSQSLDALL-LPMKPLKALATTSQPVLTKQQIETIFNKFSPIYEIHKEFYDNLHPKVQQWK 406 (1112)
T ss_pred hhHHHHHHHhcccccccchhhcccchhh-cccccccccCCCCCCCccccccccccccCCCchhhhhhhccccCchhhhhh
Confidence 4456788888999999999999998775 33445543 34677788999999999999999999999999888887
Q ss_pred ccCCCCCccchhhhHhhHHHHHhhhccccchhhHHHhc--hHHHHHHHhhc-cCChHHHHHHHhhCCCC-------CCCC
Q psy8107 664 DFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCAS--HSKAQKVLHPN-EGNQALQEFLSSRNPRQ-------QHSS 733 (1613)
Q Consensus 664 ~~~~~~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n--~~~a~~~L~~~-~~~~~f~~fl~~~~~~~-------~~~l 733 (1613)
... ..|+.|......+..|..|..| |..++..-.+| ..++.|+..-++..... ...-
T Consensus 407 sqs-------------~~~~~~~~L~S~l~n~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~~~n~~s~~sst~~ 473 (1112)
T KOG4269|consen 407 SQS-------------NSGGLFQKLASQLGNYLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVVGVNKDSKDSSTWK 473 (1112)
T ss_pred hhh-------------ccCccchhhhhhcchhhhhhcchhhhhhcccccchhhcchhhhhhhhhheecccccccccCCcc
Confidence 544 3788899999999999999999 88887777775 77778877655532221 1224
Q ss_pred CccccccccchhhhchHHHHHHHhhcCCCCCcccc----------hhhhHHHHHHhhhcccc
Q psy8107 734 TLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEHL----------HLVGVVCLISFLVGLIF 785 (1613)
Q Consensus 734 ~L~slLikPVQRI~KY~LLLkeLLK~T~~dh~Eh~----------hL~~alclv~fLigLI~ 785 (1613)
+..-.|-+|+-|+++.-+-|-+++|++|-+|+|+. .+..++...+-+++.|.
T Consensus 474 ~~~~~l~rpi~~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id 535 (1112)
T KOG4269|consen 474 DEEWLLYRPIDRVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSID 535 (1112)
T ss_pred chhhhhccchhhhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999998 67777777776666665
No 94
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=97.56 E-value=0.00024 Score=69.31 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=60.3
Q ss_pred cccCCCceEEEEEEe----CCeEEEecCCCcCCCCCCCCCCc---eeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEee
Q psy8107 17 LARKRGWKGYWVCLK----GTTLLFYPCDSREGRSVDAAPKH---LIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQ 89 (1613)
Q Consensus 17 ~~~~R~Wk~~~~vLk----G~~L~fyKd~~~~~~~~~~~p~~---~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQ 89 (1613)
+.+.-.|.++=.+|+ |..|.||--... ..+.|+- .-.|....-.-+-+++++.|+|.|+-.++.+|+|+
T Consensus 15 ~~~~~~WqkcRl~L~~~~gg~~le~~~~~pP----Kssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~E 90 (107)
T cd01231 15 MDSGARWQRGRLVLRKAVGGYMLEFYLPLPP----KSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFE 90 (107)
T ss_pred CCCccccceeeEEEEecCCCceEEEEccCCC----CCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEE
Confidence 455667999888887 456666654211 1122221 22333444445578999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q psy8107 90 APCQVELENWVNSIHS 105 (1613)
Q Consensus 90 A~~~~em~~Wi~~I~~ 105 (1613)
|.|.++|++|+..|..
T Consensus 91 a~d~~q~~SWla~Ir~ 106 (107)
T cd01231 91 VGDEQQLNSWLAELRY 106 (107)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999999863
No 95
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.47 E-value=0.00026 Score=82.32 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=49.1
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCC-CHHHHHHHHhcCCeEEEEEeecCC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDL-DMMYLESVLQEELSLCMMMRSSRT 447 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l-~~~~~~~ll~~~~~l~L~vr~~~~ 447 (1613)
.++.|+.|.++|+|+++||++||.|+.|||+++.+. ++.++.+-++.+..+.|+|.|.+.
T Consensus 191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 568999999999999999999999999999999864 334444444445789999998764
No 96
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.41 E-value=0.0014 Score=65.64 Aligned_cols=96 Identities=23% Similarity=0.444 Sum_probs=67.3
Q ss_pred ccceEEeccc-ccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEe---------eCCCCCCCC
Q psy8107 4 VKKWLLRKKH-QIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQ---------PIPEHPKRD 73 (1613)
Q Consensus 4 ~Kg~L~~K~~-k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~---------~a~dy~KK~ 73 (1613)
++||+--.+. ++ .++++|++.|+||.+.-|+||.++...+. ..|...+++.. ... ...+-+.-|
T Consensus 2 lEGwlsvP~~~~~--~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~---~~p~~vldl~~-~fhv~~V~asDVi~a~~kDiP 75 (112)
T cd01242 2 MEGWLSLPNRTNK--SRKPGWKKQYVVVSSRKILFYNDEQDKEN---STPSMILDIDK-LFHVRPVTQGDVYRADAKEIP 75 (112)
T ss_pred cceeEEccCCCCc--cccCCceEEEEEEeCCEEEEEecCccccC---CCcEEEEEccc-eeeeecccHHHeeecCcccCC
Confidence 5788744332 21 23468999999999999999998764322 12434444432 111 114555678
Q ss_pred ceEEEEcCC-CCeEEeecCCHHHHHHHHHHHHH
Q psy8107 74 YIFCLSTAF-GDAYLFQAPCQVELENWVNSIHS 105 (1613)
Q Consensus 74 nVF~L~t~d-g~~yLFQA~~~~em~~Wi~~I~~ 105 (1613)
.+|++..+. ++.-|+-|+++.|-+.|++++-.
T Consensus 76 ~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~ 108 (112)
T cd01242 76 KIFQILYANEARDLLLLAPQTDEQNKWVSRLVK 108 (112)
T ss_pred eEEEEEeCCccceEEEEeCCchHHHHHHHHHHH
Confidence 999998876 78999999999999999999864
No 97
>KOG3580|consensus
Probab=97.38 E-value=0.0011 Score=80.66 Aligned_cols=84 Identities=15% Similarity=0.311 Sum_probs=69.5
Q ss_pred ecccceEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhh-cCCCCCCEEEEEcCeecCCCCHHHHH
Q psy8107 351 VCAKILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMH-NGLIKGDEIMVINGAIVSDLDMMYLE 429 (1613)
Q Consensus 351 v~~~~~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~-~GL~~GDeIl~vNg~~v~~l~~~~~~ 429 (1613)
+-|+-++ |.|.|+..+.-||..+..| |||.++...|+|.+ .+|+.||-||.|||....+|++.+..
T Consensus 195 ~~~~p~k-v~LvKsR~nEEyGlrLgSq------------IFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar 261 (1027)
T KOG3580|consen 195 GRPGPIK-VLLVKSRANEEYGLRLGSQ------------IFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDAR 261 (1027)
T ss_pred CCCCcce-EEEEeeccchhhcccccch------------hhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHH
Confidence 3444444 4566766668999988652 79999999999976 67999999999999999999999999
Q ss_pred HHH-hcCCeEEEEEeecCC
Q psy8107 430 SVL-QEELSLCMMMRSSRT 447 (1613)
Q Consensus 430 ~ll-~~~~~l~L~vr~~~~ 447 (1613)
+|+ ++..+|.|.|.|...
T Consensus 262 ~LIEkS~GKL~lvVlRD~~ 280 (1027)
T KOG3580|consen 262 KLIEKSRGKLQLVVLRDSQ 280 (1027)
T ss_pred HHHHhccCceEEEEEecCC
Confidence 999 545899999998764
No 98
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.37 E-value=6.7e-05 Score=91.46 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=97.5
Q ss_pred HHHHHHhhc-CCCCCcccchhhhHHHHHHhhhcccccccchhHHHHHHHHhhchhhHHHHHHHhheeEEeecCchhHHHH
Q psy8107 751 LLLQQLCNL-TDPHCDEHLHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTND 829 (1613)
Q Consensus 751 LLLkeLLK~-T~~dh~Eh~hL~~alclv~fLigLI~~T~gG~yv~eL~D~y~a~~~ll~~al~E~i~i~WiyG~~rf~~d 829 (1613)
-++|-+... .++..-.+...+..++.+.+++++++.+..|.++||.+|...+++.+.+.|+.+++++.|+++.+++.++
T Consensus 322 SmlE~~va~l~~~~~~~R~~a~~~~~~~~fl~gi~~~ls~g~~~fD~~D~~~s~~l~plgaL~~~i~~~w~~~~~~~~~~ 401 (439)
T COG0733 322 SMLEVLVAALIDKFGISRKKATWLIGILIFLLGIPSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKELLREE 401 (439)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344444433 3566677788888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcccccccccccccchhhhhHHhhhhe
Q psy8107 830 IYEMTGYKPGWYWQITWRFLGPAIMSCILVSSI 862 (1613)
Q Consensus 830 i~~m~G~~~~~yWk~cW~fItP~il~~I~i~~i 862 (1613)
++.-.. +.+.+|..|-+|++|.++..+++..+
T Consensus 402 ~~~~s~-~~~~~w~~~vr~i~Pi~i~~vl~~~~ 433 (439)
T COG0733 402 LNAGSA-KLFKIWLYLVRYIAPIVILVVLILGF 433 (439)
T ss_pred HHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999865 89999999999999999999888765
No 99
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=97.26 E-value=0.00027 Score=65.67 Aligned_cols=39 Identities=18% Similarity=0.408 Sum_probs=36.5
Q ss_pred EEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccc
Q psy8107 277 VKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEH 315 (1613)
Q Consensus 277 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~ 315 (1613)
.+|.|||+|...|.+|||+|+.|+|.-+|++|+|.|...
T Consensus 2 crV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~ 40 (73)
T cd01817 2 CRVILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAV 40 (73)
T ss_pred cEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHE
Confidence 479999999999999999999999999999999997653
No 100
>KOG3552|consensus
Probab=97.24 E-value=0.00027 Score=89.67 Aligned_cols=75 Identities=27% Similarity=0.316 Sum_probs=63.8
Q ss_pred eEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC
Q psy8107 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE 435 (1613)
Q Consensus 356 ~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~ 435 (1613)
.|+|+++|... =|||| .+ |++ +.|-.|.+||++.. -|++||+||.|||.+|+++.-+-+.+|.+..
T Consensus 56 pr~vq~~r~~~-lGFgf--va------grP----viVr~VT~GGps~G-KL~PGDQIl~vN~Epv~daprervIdlvRac 121 (1298)
T KOG3552|consen 56 PRQVQLQRNAS-LGFGF--VA------GRP----VIVRFVTEGGPSIG-KLQPGDQILAVNGEPVKDAPRERVIDLVRAC 121 (1298)
T ss_pred chhhhhhcccc-cccee--ec------CCc----eEEEEecCCCCccc-cccCCCeEEEecCcccccccHHHHHHHHHHH
Confidence 79999999875 56666 34 443 89999999999875 4999999999999999999999999999655
Q ss_pred -CeEEEEEee
Q psy8107 436 -LSLCMMMRS 444 (1613)
Q Consensus 436 -~~l~L~vr~ 444 (1613)
.++.|+|..
T Consensus 122 e~sv~ltV~q 131 (1298)
T KOG3552|consen 122 ESSVNLTVCQ 131 (1298)
T ss_pred hhhcceEEec
Confidence 889999864
No 101
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.23 E-value=0.00046 Score=89.45 Aligned_cols=69 Identities=10% Similarity=0.092 Sum_probs=55.9
Q ss_pred CccceEEEEeecccccccCcceeEEEEecCCChhhhc-CCCCCCEEEEEcC-----eecCCCCHHHHHHHHhcC--CeEE
Q psy8107 368 HMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHN-GLIKGDEIMVING-----AIVSDLDMMYLESVLQEE--LSLC 439 (1613)
Q Consensus 368 ~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~-GL~~GDeIl~vNg-----~~v~~l~~~~~~~ll~~~--~~l~ 439 (1613)
.|.|..+.- .+ ..+.|.+|.|||||+++ ||++||+|+.||| .+|.+++++++.++|++. .++.
T Consensus 244 ~GIGa~l~~--~~-------~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~ 314 (667)
T PRK11186 244 EGIGAVLQM--DD-------DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVR 314 (667)
T ss_pred eEEEEEEEE--eC-------CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEE
Confidence 456666644 11 23899999999999997 9999999999994 467789999999999744 7899
Q ss_pred EEEeec
Q psy8107 440 MMMRSS 445 (1613)
Q Consensus 440 L~vr~~ 445 (1613)
|+|+|.
T Consensus 315 LtV~r~ 320 (667)
T PRK11186 315 LEILPA 320 (667)
T ss_pred EEEEeC
Confidence 999863
No 102
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.13 E-value=0.00083 Score=83.65 Aligned_cols=56 Identities=27% Similarity=0.264 Sum_probs=48.7
Q ss_pred eeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC--CeEEEEEeecC
Q psy8107 389 CCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE--LSLCMMMRSSR 446 (1613)
Q Consensus 389 ~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~--~~l~L~vr~~~ 446 (1613)
++.|.+|.++|+|+++||++||+|++|||++|.+ .+|+.+.+++. .++.++|+|.+
T Consensus 204 g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g 261 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNG 261 (420)
T ss_pred CcEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECC
Confidence 4799999999999999999999999999999975 67888888643 67899988754
No 103
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.05 E-value=0.0008 Score=84.05 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=48.1
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHh---cCCeEEEEEeecCC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQ---EELSLCMMMRSSRT 447 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~---~~~~l~L~vr~~~~ 447 (1613)
.+++|.+|.|+|+|+++||++||.|+.|||+++.+ ..++..++. .+..+.|+|+|.+.
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l~v~R~g~ 317 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTLGILRKGK 317 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 46899999999999999999999999999999985 455555553 34789999988653
No 104
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.04 E-value=0.0033 Score=66.51 Aligned_cols=86 Identities=26% Similarity=0.229 Sum_probs=55.9
Q ss_pred ceEEEEEEec---CCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCC-CCEEEEEcCeecCCCCHHHHHH
Q psy8107 355 ILYQVELQRT---TLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDLDMMYLES 430 (1613)
Q Consensus 355 ~~~~v~l~k~---~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~-GDeIl~vNg~~v~~l~~~~~~~ 430 (1613)
.+|.|.+.-+ +..+..|++|+.+=.+. -....++|-+|.|+|||++|||++ .|.|+-+|+....+ .+++.+
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~---~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~--~~~l~~ 84 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEG---AEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDD--EDDLFE 84 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TT---GCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--S--TCHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEecccc---cccceEEEeEecCCCHHHHCCccccccEEEEccceecCC--HHHHHH
Confidence 3455555433 24588999999942221 123578999999999999999999 69999999988884 567777
Q ss_pred HHhcC--CeEEEEEeec
Q psy8107 431 VLQEE--LSLCMMMRSS 445 (1613)
Q Consensus 431 ll~~~--~~l~L~vr~~ 445 (1613)
+++.. ++|.|.|...
T Consensus 85 ~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 85 LVEANENKPLQLYVYNS 101 (138)
T ss_dssp HHHHTTTS-EEEEEEET
T ss_pred HHHHcCCCcEEEEEEEC
Confidence 77433 8999999743
No 105
>PRK10898 serine endoprotease; Provisional
Probab=97.04 E-value=0.00097 Score=81.19 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=46.4
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHH---hcCCeEEEEEeecC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVL---QEELSLCMMMRSSR 446 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll---~~~~~l~L~vr~~~ 446 (1613)
.+++|.+|.++|+|+++||++||.|+.|||++|.+. .++.+++ +.+..+.|+++|.+
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 579999999999999999999999999999999764 3344444 33477899998754
No 106
>KOG0606|consensus
Probab=97.02 E-value=0.0011 Score=86.77 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=64.3
Q ss_pred EEEEEEecCCCCccceEEEE---eecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHH-
Q psy8107 357 YQVELQRTTLDHMWGFSVEA---ELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVL- 432 (1613)
Q Consensus 357 ~~v~l~k~~~~~~~GF~v~~---~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll- 432 (1613)
..|++.+.+ ..|||.+.+ ++++.+ .+-.+=.|-.|++||+|+.+||++||-|+.|||.+|.+++|.||++++
T Consensus 628 ppI~i~~~~--~~yGft~~airVy~Gd~d--~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll 703 (1205)
T KOG0606|consen 628 PPITIHFSG--KKYGFTLRAIRVYMGDKD--VYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLL 703 (1205)
T ss_pred Cceeeeccc--cccCceeeeEEEecCCcc--cceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHH
Confidence 357888877 799998776 333321 111223588999999999999999999999999999999999999998
Q ss_pred hcCCeEEEEE
Q psy8107 433 QEELSLCMMM 442 (1613)
Q Consensus 433 ~~~~~l~L~v 442 (1613)
+++..+++++
T Consensus 704 ~~gn~v~~~t 713 (1205)
T KOG0606|consen 704 KSGNKVTLRT 713 (1205)
T ss_pred hcCCeeEEEe
Confidence 4457777765
No 107
>PRK10942 serine endoprotease; Provisional
Probab=97.02 E-value=0.0013 Score=82.98 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=50.8
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC-CeEEEEEeecCC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE-LSLCMMMRSSRT 447 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~-~~l~L~vr~~~~ 447 (1613)
.++.|.+|.++|+|+++||++||.|++|||++|.+ .+++.+++++. ..+.|+|+|.+.
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 46999999999999999999999999999999986 57888888554 788899988653
No 108
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.01 E-value=0.00093 Score=81.35 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=47.5
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHh---cCCeEEEEEeecC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQ---EELSLCMMMRSSR 446 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~---~~~~l~L~vr~~~ 446 (1613)
.+++|.+|.++|+|+++||++||.|++|||++|.+ .+++.++++ .+.++.|+|+|.+
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 46899999999999999999999999999999976 445555553 2478999998764
No 109
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.01 E-value=0.0013 Score=82.78 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=47.8
Q ss_pred eeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc--CCeEEEEEeecC
Q psy8107 389 CCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE--ELSLCMMMRSSR 446 (1613)
Q Consensus 389 ~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~--~~~l~L~vr~~~ 446 (1613)
+..|.+|.++|+|+++||++||+|++|||++|. +.+|+.++++. ++.+.++++|.+
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g 279 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQG 279 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECC
Confidence 368999999999999999999999999999996 56778888754 367889988754
No 110
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.01 E-value=0.0014 Score=81.93 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=50.2
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc---CCeEEEEEeecCC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE---ELSLCMMMRSSRT 447 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~---~~~l~L~vr~~~~ 447 (1613)
.+++|.+|.++|+|+++||++||.|++|||++|.+ .+++.++++. +..+.|+|+|.+.
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 46999999999999999999999999999999974 6778888753 3789999988764
No 111
>PRK10139 serine endoprotease; Provisional
Probab=97.00 E-value=0.0015 Score=82.18 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=48.6
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc---CCeEEEEEeecC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE---ELSLCMMMRSSR 446 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~---~~~l~L~vr~~~ 446 (1613)
.+++|.+|.|+|+|+++||++||.|+.|||++|.+ ..++...+.. +.++.|+|.|.+
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G 349 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNG 349 (455)
T ss_pred CceEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 46899999999999999999999999999999985 5677777643 367899998765
No 112
>PRK10139 serine endoprotease; Provisional
Probab=96.95 E-value=0.0016 Score=81.93 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=49.7
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC-CeEEEEEeecCC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE-LSLCMMMRSSRT 447 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~-~~l~L~vr~~~~ 447 (1613)
.+++|..|.++|+|+++||++||.|++|||++|.+ .+++.+++++. +.+.|+|+|.+.
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 46899999999999999999999999999999865 56788888543 788899988653
No 113
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.95 E-value=0.0043 Score=62.02 Aligned_cols=96 Identities=8% Similarity=0.213 Sum_probs=64.3
Q ss_pred cceEEecccccccccCCCceEEEEEEeCC-eEE---EecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEc
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLKGT-TLL---FYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLST 80 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~-~L~---fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t 80 (1613)
.|||..+.++. -+-.|.++||...+. .++ .+.................|.|..|....+.+- .|.+.|.+.+
T Consensus 2 ~GYLy~~~k~~---~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~-dRRFCFei~~ 77 (104)
T cd01249 2 EGYLYMQEKSK---FGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESI-DKRFCFDVEV 77 (104)
T ss_pred CceEEEEcCCC---CCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCc-cceeeEeeee
Confidence 58888876432 244799999997763 232 222221111111122335688888877666554 8999999977
Q ss_pred CCC-CeEEeecCCHHHHHHHHHHHH
Q psy8107 81 AFG-DAYLFQAPCQVELENWVNSIH 104 (1613)
Q Consensus 81 ~dg-~~yLFQA~~~~em~~Wi~~I~ 104 (1613)
.+. ..+.|||.+++|.+.||.++.
T Consensus 78 ~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 78 EEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cCCCCeEEEEecCHHHHHHHHHhhc
Confidence 775 469999999999999999874
No 114
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.91 E-value=0.0025 Score=63.97 Aligned_cols=96 Identities=21% Similarity=0.361 Sum_probs=60.7
Q ss_pred cccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCC-----CceEE
Q psy8107 3 SVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKR-----DYIFC 77 (1613)
Q Consensus 3 ~~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK-----~nVF~ 77 (1613)
|+.|+|.-|.. ++++||++|++|+++-||+.-......+ .+......+++..+=...++.|+ ++-|.
T Consensus 1 e~~g~LylK~~-----gkKsWKk~~f~LR~SGLYy~~Kgksk~s---rdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~ 72 (114)
T cd01259 1 EMEGPLYLKAD-----GKKSWKKYYFVLRSSGLYYFPKEKTKNT---RDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFG 72 (114)
T ss_pred CccceEEEccC-----CCccceEEEEEEeCCeeEEccCCCcCCH---HHHHHHHhcccCcEEEEechhhccCCCCCceEE
Confidence 56788888743 3468999999999999997654422111 11112233333322222233222 46788
Q ss_pred EEcCCCC------eEEeecCCHHHHHHHHHHHHHH
Q psy8107 78 LSTAFGD------AYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 78 L~t~dg~------~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
++.+.-+ .-.|=|+|+..+..|+++|..+
T Consensus 73 ~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 73 FKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred EeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 8665522 2468899999999999999866
No 115
>PRK10942 serine endoprotease; Provisional
Probab=96.89 E-value=0.0015 Score=82.43 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=48.3
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHh---cCCeEEEEEeecCC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQ---EELSLCMMMRSSRT 447 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~---~~~~l~L~vr~~~~ 447 (1613)
.+++|.+|.++|+|+++||++||.|+.|||++|.+. +++...+. .+..+.|+|.|.+.
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~ 371 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK 371 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCe
Confidence 468999999999999999999999999999999864 55555553 24789999988663
No 116
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.86 E-value=0.0034 Score=63.35 Aligned_cols=97 Identities=14% Similarity=0.318 Sum_probs=65.3
Q ss_pred ceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeC--ce-EEeeCCC---CCCCCceEEEE
Q psy8107 6 KWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVD--GA-IMQPIPE---HPKRDYIFCLS 79 (1613)
Q Consensus 6 g~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~--~~-~~~~a~d---y~KK~nVF~L~ 79 (1613)
||+..+-.-- .-+.+.||..+++|+|..|++|+..-....+ -..|.+.-.|- -. ++..-+. ..++++.|.++
T Consensus 3 GW~~E~~~~~-~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~-w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~ir 80 (108)
T cd01258 3 GWVNEQLSGD-DESSQRWRPRFLALKGSEFLFFETPPLSVED-WSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIR 80 (108)
T ss_pred eecccccCCC-CccccccceEEEEEcCCcEEEEeCCCCCHHH-HhChhhhChhHHhhhheeccCCccCcCCCCceEEEEE
Confidence 6776663311 1235789999999999999999987542221 12222222222 00 1111122 23889999999
Q ss_pred cCCC-CeEEeecCCHHHHHHHHHHHH
Q psy8107 80 TAFG-DAYLFQAPCQVELENWVNSIH 104 (1613)
Q Consensus 80 t~dg-~~yLFQA~~~~em~~Wi~~I~ 104 (1613)
+..| ..++|..+...||..|.++|.
T Consensus 81 tg~~vesh~fsVEt~~dL~~W~raiv 106 (108)
T cd01258 81 TGTQVENHYLRVETHRDLASWERALV 106 (108)
T ss_pred cCCceeeEEEEecCHHHHHHHHHHHh
Confidence 9999 999999999999999999986
No 117
>KOG0609|consensus
Probab=96.86 E-value=0.0027 Score=78.30 Aligned_cols=84 Identities=25% Similarity=0.329 Sum_probs=69.0
Q ss_pred ccceEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCC-CCCCEEEEEcCeecCCCCHHHHHHH
Q psy8107 353 AKILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGL-IKGDEIMVINGAIVSDLDMMYLESV 431 (1613)
Q Consensus 353 ~~~~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL-~~GDeIl~vNg~~v~~l~~~~~~~l 431 (1613)
.+.++-|++.|... .-.|-+++.+ + +. .++|.++..||.|.|.|| ++||||++|||.+|.+.+..++.++
T Consensus 120 ~~~vriv~i~k~~~-eplG~Tik~~--e--~~----~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~ 190 (542)
T KOG0609|consen 120 VEAVRIVRIVKNTG-EPLGATIRVE--E--DT----KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQEL 190 (542)
T ss_pred cceeEEEEEeecCC-CccceEEEec--c--CC----ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHH
Confidence 34568899999864 6788888882 2 11 389999999999988775 6799999999999999999999999
Q ss_pred HhcC-CeEEEEEeec
Q psy8107 432 LQEE-LSLCMMMRSS 445 (1613)
Q Consensus 432 l~~~-~~l~L~vr~~ 445 (1613)
++.. .++++.|...
T Consensus 191 l~~~~G~itfkiiP~ 205 (542)
T KOG0609|consen 191 LRNSRGSITFKIIPS 205 (542)
T ss_pred HHhCCCcEEEEEccc
Confidence 9655 7888887544
No 118
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.83 E-value=0.0015 Score=82.12 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=46.6
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHh---cCCeEEEEEeecCCC
Q psy8107 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQ---EELSLCMMMRSSRTE 448 (1613)
Q Consensus 390 ~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~---~~~~l~L~vr~~~~~ 448 (1613)
..|++|.|+|+|++|||++||.|+.|||++|.+. +++...+. .+.++.++|.|.+..
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk~ 187 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGSD 187 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCcc
Confidence 4799999999999999999999999999999976 45544442 226799999887653
No 119
>KOG3640|consensus
Probab=96.69 E-value=0.0017 Score=83.40 Aligned_cols=101 Identities=19% Similarity=0.337 Sum_probs=76.3
Q ss_pred ccccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeC----CCCCCCCceEE
Q psy8107 2 LSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI----PEHPKRDYIFC 77 (1613)
Q Consensus 2 L~~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a----~dy~KK~nVF~ 77 (1613)
.|+||||.-=..- .++ ..|.+|||+|.|+.+.|.|.+...+ .-.|-..|+|..|.-... .|.--|+|.|-
T Consensus 990 VEYrGFLtmfed~-sgf--GaWhRyWc~L~gg~I~fWk~PdDEk---rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFh 1063 (1116)
T KOG3640|consen 990 VEYRGFLTMFEDG-SGF--GAWHRYWCALHGGEIKFWKYPDDEK---RKVPIGQIDLTKCTSQSIEEARRDICARPNTFH 1063 (1116)
T ss_pred eeeeeeeeeeecc-CCC--chhhhhhHHhcCCeeeeecCcchhc---ccCcceeeehhhhhccccccchhhhccCCceeE
Confidence 4789999877643 223 3499999999999999988765433 345777899998854443 57789999999
Q ss_pred EE---------cCCC----CeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 78 LS---------TAFG----DAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 78 L~---------t~dg----~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
|- ++.+ ---++.|++.+|++.|+.+||.+..
T Consensus 1064 ie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1064 IEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred EEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 86 1221 1457899999999999999998865
No 120
>KOG2059|consensus
Probab=96.47 E-value=0.0031 Score=79.18 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=77.6
Q ss_pred ccceEEeccc-ccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEE-eeCCC-CCCCCceEEEEc
Q psy8107 4 VKKWLLRKKH-QIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIM-QPIPE-HPKRDYIFCLST 80 (1613)
Q Consensus 4 ~Kg~L~~K~~-k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~-~~a~d-y~KK~nVF~L~t 80 (1613)
.||.|+.|+. -+++++++..|+.|+.|.+..|.|.|++.. .|.+.|.|.+-.+ ++..| -=|.+|||++-+
T Consensus 566 ~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~-------q~~~~Ipl~nI~avEklee~sF~~knv~qVV~ 638 (800)
T KOG2059|consen 566 LKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGK-------QPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVH 638 (800)
T ss_pred ecccceEeccccccchhhhhhhheEEEeccceeEEecCCcc-------CcccceeHHHHHHHHHhhhhccCCCceEEEEe
Confidence 5677777755 344578889999999999999999998754 4566788876432 22222 228899999999
Q ss_pred CCCCeEEeecCCHHHHHHHHHHHHHHHHh
Q psy8107 81 AFGDAYLFQAPCQVELENWVNSIHSACAA 109 (1613)
Q Consensus 81 ~dg~~yLFQA~~~~em~~Wi~~I~~aaa~ 109 (1613)
.| +.-.+||++-.|.+.|+++|+.++..
T Consensus 639 ~d-rtly~Q~~n~vEandWldaL~kvs~~ 666 (800)
T KOG2059|consen 639 TD-RTLYVQAKNCVEANDWLDALRKVSCC 666 (800)
T ss_pred cC-cceeEecCCchHHHHHHHHHHHHhcc
Confidence 99 68999999999999999999999885
No 121
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.45 E-value=0.0041 Score=76.38 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=41.2
Q ss_pred EEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcCCeEEEEEe
Q psy8107 392 VSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLCMMMR 443 (1613)
Q Consensus 392 Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~~~l~L~vr 443 (1613)
|..|.|||+|+++||++||+|+.|||++|.+ ..++..++.+ ..+.|+|+
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~D--w~D~~~~l~~-e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRD--LIDYQFLCAD-EELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHhcC-CcEEEEEE
Confidence 6789999999999999999999999999975 4566666653 57888885
No 122
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=96.40 E-value=0.0062 Score=77.18 Aligned_cols=87 Identities=17% Similarity=0.262 Sum_probs=58.8
Q ss_pred CCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHH
Q psy8107 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWV 100 (1613)
Q Consensus 21 R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi 100 (1613)
.+|++.|+.+++..+................+-..-.+.++.-....+-.+++|+|.+.|.+|..++|+|++++|++.|+
T Consensus 390 ~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~ 469 (478)
T PTZ00267 390 MRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWI 469 (478)
T ss_pred cchhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHH
Confidence 45999999999776666533322221121122122223333222222345789999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8107 101 NSIHSAC 107 (1613)
Q Consensus 101 ~~I~~aa 107 (1613)
.+|..|+
T Consensus 470 ~~~~~~~ 476 (478)
T PTZ00267 470 SKFQRAC 476 (478)
T ss_pred HHHHHHh
Confidence 9999886
No 123
>KOG3605|consensus
Probab=96.37 E-value=0.003 Score=78.43 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=65.0
Q ss_pred eeecccceEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHH
Q psy8107 349 VEVCAKILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYL 428 (1613)
Q Consensus 349 iEv~~~~~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~ 428 (1613)
|--||- +-.|.|.|.+..--.||+|.- + .|=++.-||-|+|.|+|+|-+|+||||++|....|+-|
T Consensus 731 iV~cpP-V~~V~I~RPd~kyQLGFSVQN-----G--------iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekI 796 (829)
T KOG3605|consen 731 IVSCPP-VTTVLIRRPDLRYQLGFSVQN-----G--------IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKI 796 (829)
T ss_pred EecCCC-ceEEEeecccchhhccceeeC-----c--------EeehhhcccchhccCceeeeeEEEECCceEEeccHHHH
Confidence 445664 456788888876789998854 2 56678899999999999999999999999999999999
Q ss_pred HHHHhcC-CeEEEE
Q psy8107 429 ESVLQEE-LSLCMM 441 (1613)
Q Consensus 429 ~~ll~~~-~~l~L~ 441 (1613)
+++|+.+ -.++|+
T Consensus 797 V~lLs~aVGEIhMK 810 (829)
T KOG3605|consen 797 VQLLSNAVGEIHMK 810 (829)
T ss_pred HHHHHHhhhhhhhh
Confidence 9999866 555554
No 124
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.36 E-value=0.023 Score=58.02 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=66.4
Q ss_pred CCCceEEEEEEeCCeEEEecCCCc-CCC----CCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHH
Q psy8107 20 KRGWKGYWVCLKGTTLLFYPCDSR-EGR----SVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQV 94 (1613)
Q Consensus 20 ~R~Wk~~~~vLkG~~L~fyKd~~~-~~~----~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~ 94 (1613)
++.++..++.|=.+.|.+.|.... ... .....-+..+++++..+.--+|-.+-+|.|.|.+.++..|.|+|.+++
T Consensus 17 ~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~e 96 (112)
T cd01261 17 KKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAE 96 (112)
T ss_pred cCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHH
Confidence 455777778888777777665432 110 112344566888877776667766779999999988889999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8107 95 ELENWVNSIHSACA 108 (1613)
Q Consensus 95 em~~Wi~~I~~aaa 108 (1613)
|-++|+.+|+.+..
T Consensus 97 eK~~Wm~~l~~~~~ 110 (112)
T cd01261 97 EKNNWMAALISVQT 110 (112)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998753
No 125
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=96.31 E-value=0.0045 Score=57.54 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=48.3
Q ss_pred EEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccceeeeeeecccccccccCCCchhhHHHhhhccceeee
Q psy8107 277 VKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREMEDHNYFVPPRGDLIETYLSTHEVVEV 351 (1613)
Q Consensus 277 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~iEv 351 (1613)
++++|||+|-..|-+|||||+.|.|..+-|.|+|-|.- ..+-+..+.++..+.++= ++++..+. -+|+.|
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~--C~V~~~~~~~~~~~~i~W-~td~~~L~--geEL~V 71 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPEC--CAVFRLGDGSSKKLRIDW-DTDISSLI--GEELQV 71 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhH--eEEEEcCCCcccccccch-hhhhhhcc--CceEEE
Confidence 68999999999999999999999999999999999753 333333332222343433 34555553 344443
No 126
>KOG3129|consensus
Probab=96.21 E-value=0.0094 Score=65.61 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=44.5
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCC-HHHHHHHHh--cCCeEEEEEeecCCC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD-MMYLESVLQ--EELSLCMMMRSSRTE 448 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~-~~~~~~ll~--~~~~l~L~vr~~~~~ 448 (1613)
+-.+|++|.|+|||..|||++||+|+.+.+..-.+-. +..+...-+ +.+.+.++|.|.+..
T Consensus 139 ~Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 139 PFAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred ceEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 5678999999999999999999999999874333222 334444432 237888888876653
No 127
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.09 E-value=0.01 Score=58.56 Aligned_cols=97 Identities=21% Similarity=0.275 Sum_probs=67.2
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCC----------CCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHP----------KRD 73 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~----------KK~ 73 (1613)
.-|||...++. ..++||+.|+||+|-.-|-+--..-. ...+.|.+.+-|.|..++-....+ .-+
T Consensus 4 ~sGyL~k~Gg~----~~KkWKKRwFvL~qvsQYtfamcsy~--ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~ 77 (117)
T cd01234 4 HCGYLYAIGKN----VWKKWKKRFFVLVQVSQYTFAMCSYR--EKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGR 77 (117)
T ss_pred eeEEEEeccch----hhhhhheeEEEEEchhHHHHHHHhhh--hhcCCchhheeecceEEeccCCCCCCcccccccccch
Confidence 34777666552 24679999999998665554322111 223567889999999887763333 334
Q ss_pred ceEEEEcCCCCeEEeecCCHHHHHHHHHHHHHHH
Q psy8107 74 YIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107 (1613)
Q Consensus 74 nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~~aa 107 (1613)
+-|.. ...|++..|.++++.|...||+++-.|.
T Consensus 78 ~ff~a-vkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 78 HFFNA-VKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred hhhhe-eccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 44543 3568899999999999999999998774
No 128
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=95.90 E-value=0.0098 Score=74.25 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=44.2
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC-CeEEEEEeecCC
Q psy8107 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE-LSLCMMMRSSRT 447 (1613)
Q Consensus 390 ~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~-~~l~L~vr~~~~ 447 (1613)
.+|.+|.|+|+|++|||++||.|+.|||+++.+. .++...+... .++.+++.|.+.
T Consensus 130 ~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g~ 186 (420)
T TIGR00054 130 PVIELLDKNSIALEAGIEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAERE 186 (420)
T ss_pred ceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEecC
Confidence 5899999999999999999999999999988765 5555554221 567777777543
No 129
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.83 E-value=0.071 Score=53.85 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=63.6
Q ss_pred CCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHH
Q psy8107 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWV 100 (1613)
Q Consensus 21 R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi 100 (1613)
++-+..|+.|=.+.|.+-+-. . . .........++|.+..++...|-..-+|.|++.++. ..|.++|++++|...|+
T Consensus 16 k~~~~R~ffLFnD~LvY~~~~-~-~-~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~-kSf~v~A~s~~eK~eWl 91 (104)
T cd01218 16 KKPKQRQFFLFNDILVYGNIV-I-S-KKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTPT-KSFAVYAATETEKREWM 91 (104)
T ss_pred CCCceEEEEEecCEEEEEEee-c-C-CceeeEeeEEEccceEEEecCCcccccceEEEecCC-eEEEEEcCCHHHHHHHH
Confidence 345556788888766553211 0 0 112334568899999888887766779999999987 57999999999999999
Q ss_pred HHHHHHHHh
Q psy8107 101 NSIHSACAA 109 (1613)
Q Consensus 101 ~~I~~aaa~ 109 (1613)
++|+.|+..
T Consensus 92 ~~i~~ai~~ 100 (104)
T cd01218 92 LHINKCVTD 100 (104)
T ss_pred HHHHHHHHH
Confidence 999999864
No 130
>KOG1738|consensus
Probab=95.47 E-value=0.075 Score=66.99 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=58.9
Q ss_pred EEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhh-cCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC-C
Q psy8107 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMH-NGLIKGDEIMVINGAIVSDLDMMYLESVLQEE-L 436 (1613)
Q Consensus 359 v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~-~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~-~ 436 (1613)
|++.+.....+.|+.+.... ++.| .|+++.++++|++ .-+..||||+.||+.-|-+.++.-++.-+.+. .
T Consensus 204 vqls~~kp~eglg~~I~Ssy----dg~h----~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~s 275 (638)
T KOG1738|consen 204 VQLSTLSPSEGLGLYIDSSY----DGPH----VTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPA 275 (638)
T ss_pred HHhccCCcccCCceEEeeec----CCce----eccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcc
Confidence 55554344478999888833 3344 8999999999965 55677999999999999999999999999766 4
Q ss_pred eEEEEEe
Q psy8107 437 SLCMMMR 443 (1613)
Q Consensus 437 ~l~L~vr 443 (1613)
.+.++|.
T Consensus 276 gi~l~lk 282 (638)
T KOG1738|consen 276 GIELTLK 282 (638)
T ss_pred cceeeee
Confidence 4444443
No 131
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.45 E-value=0.021 Score=72.88 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=40.4
Q ss_pred EeeCCCCCC--CCceEEEEcCCCCeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 63 MQPIPEHPK--RDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 63 ~~~a~dy~K--K~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
+.....|++ .+|||-|.+..|+.++|||.+.+|++.||.+|..++.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 443 FPVPSKYTGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred ccccHHhhCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 334456777 8999999999999999999999999999999998864
No 132
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=95.35 E-value=0.064 Score=65.83 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=40.4
Q ss_pred CCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc--CCeEEEEEeecCC
Q psy8107 397 DKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE--ELSLCMMMRSSRT 447 (1613)
Q Consensus 397 ~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~--~~~l~L~vr~~~~ 447 (1613)
.+++|+++||++||+|+.|||++|.+ .+|+.+++++ +..+.|+|+|.+.
T Consensus 122 ~~SPAa~AGLq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~LtV~R~Ge 172 (402)
T TIGR02860 122 IHSPGEEAGIQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLTIERGGK 172 (402)
T ss_pred CCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEEEEECCE
Confidence 36899999999999999999999875 4677777754 3789999988764
No 133
>KOG0690|consensus
Probab=95.28 E-value=0.033 Score=65.02 Aligned_cols=98 Identities=17% Similarity=0.309 Sum_probs=69.0
Q ss_pred ccceEEecccccccccCCCceEEEEEEe-CCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLK-GTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAF 82 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLk-G~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~d 82 (1613)
..|||.+|+.- -|.|+..|++|+ ..+|.=||.+.+... +...|-+-..+.+|..... ..-|+|.|-++.-.
T Consensus 17 kEgWlhKrGE~-----IknWRpRYF~l~~DG~~~Gyr~kP~~~~-~~p~pLNnF~v~~cq~m~~--erPrPntFiiRcLQ 88 (516)
T KOG0690|consen 17 KEGWLHKRGEH-----IKNWRPRYFLLFNDGTLLGYRSKPKEVQ-PTPEPLNNFMVRDCQTMKT--ERPRPNTFIIRCLQ 88 (516)
T ss_pred HhhhHhhcchh-----hhcccceEEEEeeCCceEeeccCCccCC-CCcccccchhhhhhhhhhc--cCCCCceEEEEeee
Confidence 35788777653 256999999988 457777876644332 2234545556666544333 34689999988777
Q ss_pred CCe---EEeecCCHHHHHHHHHHHHHHHHh
Q psy8107 83 GDA---YLFQAPCQVELENWVNSIHSACAA 109 (1613)
Q Consensus 83 g~~---yLFQA~~~~em~~Wi~~I~~aaa~ 109 (1613)
|.. =-|.+++.++.+.|+.+|..++..
T Consensus 89 WTTVIERTF~ves~~eRq~W~~AIq~vsn~ 118 (516)
T KOG0690|consen 89 WTTVIERTFYVESAEERQEWIEAIQAVSNR 118 (516)
T ss_pred eeeeeeeeeecCCHHHHHHHHHHHHHHhhh
Confidence 764 459999999999999999988764
No 134
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=94.90 E-value=0.037 Score=64.69 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=40.3
Q ss_pred hhhcCCCCCCEEEEEcCeecCCCC-HHHHHHHHhcCCeEEEEEeecCCC
Q psy8107 401 AMHNGLIKGDEIMVINGAIVSDLD-MMYLESVLQEELSLCMMMRSSRTE 448 (1613)
Q Consensus 401 A~~~GL~~GDeIl~vNg~~v~~l~-~~~~~~ll~~~~~l~L~vr~~~~~ 448 (1613)
=+++||++||-+..|||.++.+.. ..++.+.|++...++|+|+|.|..
T Consensus 220 F~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~ 268 (276)
T PRK09681 220 FDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGAR 268 (276)
T ss_pred HHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEE
Confidence 388999999999999999997554 346777778889999999998764
No 135
>KOG3524|consensus
Probab=94.84 E-value=0.065 Score=67.67 Aligned_cols=153 Identities=12% Similarity=-0.012 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----CCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcc
Q psy8107 588 LTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKE-----TFLSGAEINALFGNILEIVAFQRQFLQNLVEALENE 662 (1613)
Q Consensus 588 ~~~~~KR~~VI~ELl~TEr~YVkdL~~L~e~yl~pL~~~-----~iL~~~e~~~LF~NIeeIl~~h~~FL~~Le~~~~~~ 662 (1613)
..+...+...-.+|+.||-.|+..+-..+..+..|+..+ .+....++..+|+.+++++.-|..-..+.++.+...
T Consensus 389 ~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~e~k~el~ka 468 (850)
T KOG3524|consen 389 KEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWIEAKEELKKA 468 (850)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhHHHHHHHHHh
Confidence 344556777899999999999998877777888888543 356778999999999998888888777777665432
Q ss_pred cccCCCCCccchhhhHhhHHHHHhhhccccchhhHHHhchHHHHHHHhh-ccCChHHHHHHHhhCCCCC-CCCCcccccc
Q psy8107 663 ADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHP-NEGNQALQEFLSSRNPRQQ-HSSTLESYLI 740 (1613)
Q Consensus 663 ~~~~~~~~~~~~~~~i~~IGdvFl~~~~~fk~Y~~Yc~n~~~a~~~L~~-~~~~~~f~~fl~~~~~~~~-~~l~L~slLi 740 (1613)
-. .+.+.|+.|..++...++....+.+ ++.++.+.+|.+....... +....-..++
T Consensus 469 yp----------------------pyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvi 526 (850)
T KOG3524|consen 469 YP----------------------PYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVI 526 (850)
T ss_pred cc----------------------chhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhHHH
Confidence 21 2333444444444444443333433 3566666777766544433 3345666788
Q ss_pred ccchhhhchHHHHHHHhhcCCCCC
Q psy8107 741 KPIQRILKYPLLLQQLCNLTDPHC 764 (1613)
Q Consensus 741 kPVQRI~KY~LLLkeLLK~T~~dh 764 (1613)
.|+||++| ++...+-+++++..
T Consensus 527 lllndl~k--~s~N~dk~~leea~ 548 (850)
T KOG3524|consen 527 LLLNDMAK--KSDNKDKNNLEEAA 548 (850)
T ss_pred HHHHHHHh--hccCcchhhHHHhh
Confidence 99999999 55555544444333
No 136
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.75 E-value=0.12 Score=53.81 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=61.5
Q ss_pred CccccceEEeccccccc--cc-CCCceEEEEEEeCCeEEEecCCCcCCC-CCCCCCCceeEeCceEEeeC-----CCCCC
Q psy8107 1 FLSVKKWLLRKKHQIEL--AR-KRGWKGYWVCLKGTTLLFYPCDSREGR-SVDAAPKHLIIVDGAIMQPI-----PEHPK 71 (1613)
Q Consensus 1 ~L~~Kg~L~~K~~k~~~--~~-~R~Wk~~~~vLkG~~L~fyKd~~~~~~-~~~~~p~~~I~l~~~~~~~a-----~dy~K 71 (1613)
||..+|-|..=...... .+ +-+=+.+|..|=.+.|.+-|.+....- -.+..+...|.+..+-.... .....
T Consensus 2 wLvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~ 81 (125)
T cd01221 2 WLVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVG 81 (125)
T ss_pred ceEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccC
Confidence 66677766653221111 11 112357899999888888775431110 11234555666664322111 11124
Q ss_pred CCceEEEE---cCCC--CeEEeecCCHHHHHHHHHHHH
Q psy8107 72 RDYIFCLS---TAFG--DAYLFQAPCQVELENWVNSIH 104 (1613)
Q Consensus 72 K~nVF~L~---t~dg--~~yLFQA~~~~em~~Wi~~I~ 104 (1613)
.+|.|+++ +.+| .+++++|+++.|++.||+++.
T Consensus 82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 68999985 4445 459999999999999999983
No 137
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=94.63 E-value=0.06 Score=66.76 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=36.0
Q ss_pred CCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCe
Q psy8107 366 LDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418 (1613)
Q Consensus 366 ~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~ 418 (1613)
....+|..|.. ++| +.-|+.|.+||||++|||.+||+|+.|||.
T Consensus 449 ~~~~LGl~v~~----~~g-----~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 449 EAYYLGLKVKS----EGG-----HEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred CCcccceEecc----cCC-----eeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 34577777755 222 258999999999999999999999999997
No 138
>KOG3571|consensus
Probab=94.34 E-value=0.11 Score=63.61 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=58.5
Q ss_pred CCccceEEEEeecccccccCcceeEEEEecCCChhhh-cCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC----CeEEEE
Q psy8107 367 DHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMH-NGLIKGDEIMVINGAIVSDLDMMYLESVLQEE----LSLCMM 441 (1613)
Q Consensus 367 ~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~-~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~----~~l~L~ 441 (1613)
....|+++.+|--+ .+ | -+|||.++.+||.-+. .-+-+||.||.||..+.++++-+|.+.+|++. .++.|+
T Consensus 260 vnfLGiSivgqsn~--rg-D-ggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~lt 335 (626)
T KOG3571|consen 260 VNFLGISIVGQSNA--RG-D-GGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLT 335 (626)
T ss_pred cccceeEeecccCc--CC-C-CceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEE
Confidence 35789999996433 22 2 4699999999997655 45778999999999999999999999999765 447787
Q ss_pred Ee
Q psy8107 442 MR 443 (1613)
Q Consensus 442 vr 443 (1613)
|-
T Consensus 336 vA 337 (626)
T KOG3571|consen 336 VA 337 (626)
T ss_pred Ee
Confidence 64
No 139
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=94.16 E-value=0.57 Score=56.40 Aligned_cols=195 Identities=16% Similarity=0.303 Sum_probs=106.3
Q ss_pred HHHhhhcchhhhHHHhhhhc-cCCChhhhhhhhhhcccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhcccC-CCCCCC
Q psy8107 885 VMLILEGIPLFLIELGIGQK-MRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSS-LPWSSC 962 (1613)
Q Consensus 885 i~l~liGlPll~lElalGQ~-~r~g~i~a~~~i~p~~~GvG~~~~li~~li~~YYsVi~aW~L~Y~~~Sf~~~-lpW~~C 962 (1613)
+.-.++++++.++-..++++ -+++.....++... +++| -+++++...|+-...+..+..+..-.... +|
T Consensus 39 ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~G--k~lg---~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp---- 109 (320)
T PF03845_consen 39 LLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFG--KWLG---KIINLLYILYFLLISALVLREFSEFIKTYLLP---- 109 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhC--cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 34445566666667777765 55566666554322 2233 35566777777777777776665554432 22
Q ss_pred CCCCCCCcCCcccCCchhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHH
Q psy8107 963 PTDHNGTIIPECELSSETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVL 1042 (1613)
Q Consensus 963 ~~~~n~~~~~~C~~s~~~~~f~~~~vL~~s~~i~~~g~~~~~l~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL 1042 (1613)
..+.|.. +++..++++.+..+|+|..+|+. ..++|.+++
T Consensus 110 ------------------------------------~TP~~~i---~~~~ll~~~y~a~~G~e~i~R~~--~~~~~~~~i 148 (320)
T PF03845_consen 110 ------------------------------------ETPIWVI---ILLFLLVAAYAARKGIEVIARVA--EILFPIFLI 148 (320)
T ss_pred ------------------------------------cCCHHHH---HHHHHHHHHHHHhcCHHHHHHHH--HHHHHHHHH
Confidence 0112222 23334667788899999999853 345565555
Q ss_pred HHHHHHhccCCChhccceeeeccccccccChhHHHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHH
Q psy8107 1043 TIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTA 1122 (1613)
Q Consensus 1043 ~iLlir~ltL~Ga~~Gl~~lf~Pd~s~L~~~~vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vS 1122 (1613)
..+++..+.++...- ..+.|=++. +..-...+.-.+++.+ .|+-.+..+..|.+++++..|..+.-.++.++.-
T Consensus 149 ~~~~i~~~~~~~~~~---~~l~P~~~~--g~~~i~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~ 222 (320)
T PF03845_consen 149 LLLLILLLSIPNIDW---DNLLPVLES--GIKPILKGSLVISFPF-GGIEILLFLFPFVKDKKKLKKSLLIAILISGLFL 222 (320)
T ss_pred HHHHHHHHhcccCCH---HHeeCcccC--ChHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 555554544443221 123332221 2333444444444444 3666677788888888888776655554444443
Q ss_pred HHHHHHHHhhhcc
Q psy8107 1123 IYASVVVFAILGF 1135 (1613)
Q Consensus 1123 llAgl~IFsilG~ 1135 (1613)
.+..++...++|.
T Consensus 223 ~~~~~~~i~vfG~ 235 (320)
T PF03845_consen 223 LFIIFITIGVFGP 235 (320)
T ss_pred HHHHHHHHHhcCH
Confidence 4444444444443
No 140
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.04 E-value=0.054 Score=50.01 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=31.0
Q ss_pred EEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccceeeeee
Q psy8107 279 VSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKK 321 (1613)
Q Consensus 279 v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~~~~~ 321 (1613)
|--+|++.+.|.+-|++++.|||+.+|+..+|||..|.|+-.+
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~ 43 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNN 43 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETT
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECC
Confidence 3468999999999999999999999999999999988876544
No 141
>KOG3751|consensus
Probab=93.93 E-value=0.11 Score=64.12 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=58.8
Q ss_pred CccccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCC-----CCce
Q psy8107 1 FLSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPK-----RDYI 75 (1613)
Q Consensus 1 ~L~~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~K-----K~nV 75 (1613)
++|+.|||.-|.. +|++||++||||+.+-||+.-....... .+....-++|+..+=......| -++-
T Consensus 316 ~pei~GfL~~K~d-----gkKsWKk~yf~LR~SGLYys~K~tsk~~---r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~ 387 (622)
T KOG3751|consen 316 PPEIQGFLYLKED-----GKKSWKKHYFVLRRSGLYYSTKGTSKEP---RHLQCLADLHSSNVYTGIGGRKKYKSPTDYG 387 (622)
T ss_pred Cccccceeeeccc-----ccccceeEEEEEecCcceEccCCCCCCc---hhhHHHHhcccCceEEeecchhccCCCCCce
Confidence 3688999999854 3468999999999999998754432211 1111222333222111111111 1346
Q ss_pred EEEEcCC-C----CeEEeecCCHHHHHHHHHHHHHH
Q psy8107 76 FCLSTAF-G----DAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 76 F~L~t~d-g----~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
|+++-.. + .-=+|=|+|+.-...|+++|..+
T Consensus 388 f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~ 423 (622)
T KOG3751|consen 388 FCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLL 423 (622)
T ss_pred EEeeeccccCcccceeeeecccchhHHHHHHHHHHH
Confidence 6654221 1 22357899999999999999865
No 142
>KOG3531|consensus
Probab=93.84 E-value=0.025 Score=72.41 Aligned_cols=92 Identities=28% Similarity=0.562 Sum_probs=71.6
Q ss_pred cceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeC--CCCCCCCceEEEEcCC
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI--PEHPKRDYIFCLSTAF 82 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a--~dy~KK~nVF~L~t~d 82 (1613)
-|+|+||=. ..-+|.+.|+|-....|||||... ++.|-..+.|-|....+. +|-.-|.+||+|+-..
T Consensus 927 sg~Llrkfk-----nssgwqkLwvvft~fcl~fyKS~q------D~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~ 995 (1036)
T KOG3531|consen 927 SGYLLRKFK-----NSSGWQKLWVVFTNFCLFFYKSHQ------DSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKS 995 (1036)
T ss_pred hHHHHHHhh-----ccccceeeeeeecceeeEeecccc------cccccccccccccccCCCCCCCCcchhheeeeehhh
Confidence 466777632 124799999999999999999873 333444555666555554 5778999999999876
Q ss_pred CCeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 83 GDAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 83 g~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
.+|.|.|++.---+.|...|..|..
T Consensus 996 -hvyffraes~yt~~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 996 -HVYFFRAESYYTFERWMEVITDAPS 1020 (1036)
T ss_pred -hHHHHhhhhhhhhhhHHHHhhcCCc
Confidence 6899999999999999999998755
No 143
>PRK11375 allantoin permease; Provisional
Probab=93.37 E-value=3.1 Score=53.24 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCC
Q psy8107 1006 VLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG 1054 (1613)
Q Consensus 1006 ~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~G 1054 (1613)
.++.++.|++.......|.+...|+.++...+-++++++++++++..-|
T Consensus 159 ~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g 207 (484)
T PRK11375 159 LITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVG 207 (484)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5666777888777788888888776554443334456666677766653
No 144
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=92.80 E-value=1.5 Score=54.06 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=80.0
Q ss_pred HHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChhccceeeeccccccccChhHHHHHHhhHHHhhccccccee
Q psy8107 1016 VFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLI 1095 (1613)
Q Consensus 1016 v~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~lf~Pd~s~L~~~~vW~~A~~QaFfSLslG~G~mi 1095 (1613)
+...+++|++..+|+..+....-++.++++++.++..-... .+.|.......+..+..|+.-.++++| ..+.+.
T Consensus 125 ~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~fg-~~~~i~ 198 (381)
T TIGR00837 125 FGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGD-----LLLDVALDTSYWPYILSALPVCLTSFG-FHGNVP 198 (381)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH-----HHhcCccccccHHHHHHHHHHHHHHHH-cccccH
Confidence 33567789888887755433322222222222222211110 112211101134456688888888884 224566
Q ss_pred hhccccC-CCCccccceehhhhhHHHHHHHHHHHHHhhhccccccccccCCCceecccCCCceehHHHHHHHHhCCChhH
Q psy8107 1096 AFGSYNQ-PNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPF 1174 (1613)
Q Consensus 1096 tygSY~~-~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~~~~i~~~~~~G~gL~Fi~lP~af~~mp~g~l 1174 (1613)
.+..|.+ .+.++.|..++-..+-+++-++-.++ ++|....+ .+......+... -.+..++..+-++..
T Consensus 199 ~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~---~~g~~~~~------~l~~~~~~~~~~--~~l~~~~~~~~~~~~ 267 (381)
T TIGR00837 199 SLYKYYDGNVKKVKKSILIGSAIALVLYILWQLA---TMGNLPRS------EFLPIIAKGGNL--DGLVNALQGVLKSSA 267 (381)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCHH------HHHHHHHcCCCh--HHHHHHHHHhccchH
Confidence 6666654 34455555444333333333333333 33333221 010001111111 122334444333444
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhhhhhhhhcccc
Q psy8107 1175 WSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIF 1208 (1613)
Q Consensus 1175 ~avLFFl~L~lagltS~isllE~iVt~l~D~~~~ 1208 (1613)
.+.+.-+.-+++-++|..+..-...+.+.|.++.
T Consensus 268 ~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~ 301 (381)
T TIGR00837 268 IELALELFSNFALASSFLGVTLGLFDYLADLFKF 301 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444444445555677777777777777776543
No 145
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.75 E-value=0.36 Score=49.20 Aligned_cols=91 Identities=13% Similarity=0.183 Sum_probs=61.3
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeC-CCC----CCCCceEEE
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI-PEH----PKRDYIFCL 78 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a-~dy----~KK~nVF~L 78 (1613)
++||+++=-.|- ..||+.|-+|....+.+|+++.. ..+-..|+|..-+...+ .+. .-.+|.|.+
T Consensus 2 kEGWmVHyT~~d-----~~rKRhYWrLDsK~Itlf~~e~~------skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi 70 (117)
T cd01239 2 KEGWMVHYTSSD-----NRRKKHYWRLDSKAITLYQEESG------SRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEI 70 (117)
T ss_pred ccceEEEEecCc-----cceeeeEEEecCCeEEEEEcCCC------CeeeEEeehHHheEEeccCCCcCCCCCCCcEEEE
Confidence 579999875542 34889999999999999998743 23334455554333322 222 368999999
Q ss_pred EcCCCCeEEeecCC--------------------HHHHHHHHHHHHHH
Q psy8107 79 STAFGDAYLFQAPC--------------------QVELENWVNSIHSA 106 (1613)
Q Consensus 79 ~t~dg~~yLFQA~~--------------------~~em~~Wi~~I~~a 106 (1613)
+|++ ..|+-+.++ .+..++|-++|..|
T Consensus 71 ~T~~-~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 71 RTTT-NVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EecC-EEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 9955 677776642 34568899999764
No 146
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=92.72 E-value=1.1 Score=55.76 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=37.9
Q ss_pred hHHHHHHhhHHHhhcccccceehhc-cccCC-C--Cccccceehhh-hhHHHHHHHHHHHHHhhhccccc
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFG-SYNQP-N--NNCVRDVIMVS-ICNALTAIYASVVVFAILGFKAM 1138 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mityg-SY~~~-~--~ni~rda~~v~-~~n~~vSllAgl~IFsilG~~a~ 1138 (1613)
.....|+--.+||.+ |.+++-++. +|.+. + ++..+.+.-+. ....+..++-.+-+|+.+|....
T Consensus 186 ~~i~~alpv~~~SF~-~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~ 254 (397)
T TIGR00814 186 KTLWLTIPVMVFSFN-HSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSP 254 (397)
T ss_pred HHHHHHHHHHHHHHH-ccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 456788899999998 888888888 66332 1 22223223333 23333334455666777776653
No 147
>KOG0521|consensus
Probab=92.67 E-value=0.12 Score=68.61 Aligned_cols=86 Identities=16% Similarity=0.397 Sum_probs=71.6
Q ss_pred cCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHH
Q psy8107 19 RKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELEN 98 (1613)
Q Consensus 19 ~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~ 98 (1613)
..+.|++.|+-.+++.|.+++.-..... ....++..|.+....+..-|+..|++-++.+ .|++||+|+.|-+.
T Consensus 287 ~~~tw~r~~f~~q~~~l~~~~r~~~~~~------~~~~dL~~csvk~~~~~~drr~CF~iiS~tk-s~~lQAes~~d~~~ 359 (785)
T KOG0521|consen 287 ASKTWKRRWFSIQDGQLGYQHRGADAEN------VLIEDLRTCSVKPDAEQRDRRFCFEIISPTK-SYLLQAESEKDCQD 359 (785)
T ss_pred chhhHHhhhhhhhccccccccccccccc------cccccchhccccCCcccccceeeEEEecCCc-ceEEecCchhHHHH
Confidence 4577999999999888888776533221 5678888899989999888999999999764 59999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy8107 99 WVNSIHSACAAAF 111 (1613)
Q Consensus 99 Wi~~I~~aaa~~~ 111 (1613)
||.+|+..++..+
T Consensus 360 Wi~~i~nsi~s~l 372 (785)
T KOG0521|consen 360 WISALQNSILSAL 372 (785)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 148
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=92.66 E-value=1.3 Score=53.95 Aligned_cols=113 Identities=17% Similarity=0.220 Sum_probs=60.4
Q ss_pred HHHHhhhcccccceeeeeehhhHHHHHHH-HHHHHhccCCChhccceeeeccccccccChhHHHHHHhhHHHhhcccccc
Q psy8107 1015 IVFFIVMKGIQSSGRVVYFTSMFPYIVLT-IFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGS 1093 (1613)
Q Consensus 1015 iv~~~v~kGI~~~gKv~~~~~l~P~vlL~-iLlir~ltL~Ga~~Gl~~lf~Pd~s~L~~~~vW~~A~~QaFfSLslG~G~ 1093 (1613)
++..+..+|+|..+++..+. +|++++. ++++-.+..+.. ..+ .+.|-++. .-..+|..+...++|+.+ |+..
T Consensus 125 ~~~~~~~~Gi~~i~r~~~i~--~~~~i~~~~~il~~~~~~~~--~~~-~l~P~~~~-g~~~~~~~~~~~~~~~f~-g~~i 197 (359)
T TIGR00912 125 VSIYIVRKGIEVLLRTAEIL--LIIFLILFILVLILLAPKLG--NIK-NLLPVLEN-GLSPILKGAYPVVTFAFG-EIEI 197 (359)
T ss_pred HHHHHHHccHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccc--cHH-HccCcccc-CcHHHHhhhhHHhhhhhH-HHHH
Confidence 45556788999998875443 3433322 122222222211 111 12344432 113445555557778875 8888
Q ss_pred eehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhc
Q psy8107 1094 LIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILG 1134 (1613)
Q Consensus 1094 mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG 1134 (1613)
+..+..|.+++.+..|..++-.++.+++-++..++...++|
T Consensus 198 ~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg 238 (359)
T TIGR00912 198 FFLLFPLLSKKKKIKKSIIKAIIIGVLLYILTTFVSISVFG 238 (359)
T ss_pred HHHHHHHhCChhhhHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 88888888887787776555444443333333333334443
No 149
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.2 Score=61.00 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=46.1
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc---CCeEEEEEeecCC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE---ELSLCMMMRSSRT 447 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~---~~~l~L~vr~~~~ 447 (1613)
.+..|.+|.|+|+|.++|+++||.|+.+||++|.+. .++...+.. +..+.+++.|.+.
T Consensus 270 ~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CceEEEecCCCChHHHcCCCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCE
Confidence 448999999999999999999999999999998764 344444422 3688888887643
No 150
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=92.45 E-value=0.29 Score=55.38 Aligned_cols=54 Identities=28% Similarity=0.326 Sum_probs=41.9
Q ss_pred ecCCChhhhcCCCCCCEEEEEcCeecCCC-CHHHHHHHHhcCCeEEEEEeecCCC
Q psy8107 395 VEDKSVAMHNGLIKGDEIMVINGAIVSDL-DMMYLESVLQEELSLCMMMRSSRTE 448 (1613)
Q Consensus 395 V~~gg~A~~~GL~~GDeIl~vNg~~v~~l-~~~~~~~ll~~~~~l~L~vr~~~~~ 448 (1613)
.+++++=++-||+.||-.+.+||.+..+= ++..+.++|.+.+++.|+|+|.|.+
T Consensus 214 gkd~slF~~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G~r 268 (275)
T COG3031 214 GKDGSLFYKSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRGKR 268 (275)
T ss_pred CCCcchhhhhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecCcc
Confidence 56778889999999999999999766542 2334445556669999999998865
No 151
>KOG3605|consensus
Probab=92.16 E-value=0.18 Score=63.46 Aligned_cols=94 Identities=21% Similarity=0.231 Sum_probs=70.8
Q ss_pred cceeeeccc--ceEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcC-CCCCCEEEEEcCeecCC
Q psy8107 346 HEVVEVCAK--ILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNG-LIKGDEIMVINGAIVSD 422 (1613)
Q Consensus 346 ~~~iEv~~~--~~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~G-L~~GDeIl~vNg~~v~~ 422 (1613)
.||+|+|.| +-+-|.+.|... ...|.- |+|.+=+-=++.+.|..+-++|+|.|.| |..||+|+.|||.+..+
T Consensus 634 gDeLe~FakkE~qKEVvv~K~kG-EiLGVV----iVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVG 708 (829)
T KOG3605|consen 634 GDELEHFAKKENQKEVVLEKHKG-EILGVV----IVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVG 708 (829)
T ss_pred ccHHHHhhhhcccceeeeecccC-ceeeEE----EEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceecc
Confidence 467788874 345688888764 455542 3565555556778899999999999976 77899999999999999
Q ss_pred CCHHHHHHHHhcC---CeEEEEEee
Q psy8107 423 LDMMYLESVLQEE---LSLCMMMRS 444 (1613)
Q Consensus 423 l~~~~~~~ll~~~---~~l~L~vr~ 444 (1613)
|.++--...+++- ..+.|+|-+
T Consensus 709 LPLstcQs~Ik~~KnQT~VkltiV~ 733 (829)
T KOG3605|consen 709 LPLSTCQSIIKGLKNQTAVKLNIVS 733 (829)
T ss_pred ccHHHHHHHHhcccccceEEEEEec
Confidence 9999999988643 456666643
No 152
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=92.03 E-value=1.7 Score=54.23 Aligned_cols=171 Identities=16% Similarity=0.234 Sum_probs=89.5
Q ss_pred HHHHHHhhhcccccceeeeeehhhHHHHH----HHHHHHHhc---cCCChhcc-ceeeeccccc--cccChhHH----HH
Q psy8107 1013 WIIVFFIVMKGIQSSGRVVYFTSMFPYIV----LTIFFIRGI---TLPGAGAG-LVHMYTPKVE--KLLDPNVW----LD 1078 (1613)
Q Consensus 1013 w~iv~~~v~kGI~~~gKv~~~~~l~P~vl----L~iLlir~l---tL~Ga~~G-l~~lf~Pd~s--~L~~~~vW----~~ 1078 (1613)
-+++.+.+..|+++.+|+. ..++|+.. +..+.+-.. .+|++..- ++.-|+|+-- -. -.... ..
T Consensus 147 ~~l~~~vi~GGikrI~~v~--~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~-~G~~i~~ai~~ 223 (416)
T PF01235_consen 147 AILVALVIFGGIKRIAKVS--EKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGF-AGSTIMMAIRQ 223 (416)
T ss_pred HHHHHHHHHcchhHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhH-HHHHHHHHHHH
Confidence 3456777899999998874 34666421 222222222 33433222 1222333310 00 01222 33
Q ss_pred HHhhHHHhhcccccceehhccccCCCCcccc--ceehhhhhHHH-HHHHHHHHHHhhhccccccccccCCCceecccCCC
Q psy8107 1079 AATQVFYSFGLAFGSLIAFGSYNQPNNNCVR--DVIMVSICNAL-TAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGT 1155 (1613)
Q Consensus 1079 A~~QaFfSLslG~G~mitygSY~~~~~ni~r--da~~v~~~n~~-vSllAgl~IFsilG~~a~~~~~~~~~i~~~~~~G~ 1155 (1613)
-+.-.+||--.|+|.-..-.+-.+-++.+-. -+.+-+++|++ ++-+.+++|...--+... ...+|.
T Consensus 224 Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~-----------~~~~g~ 292 (416)
T PF01235_consen 224 GVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWG-----------SGLEGA 292 (416)
T ss_pred hhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCC-----------CcchHH
Confidence 3444578888899988777776665554322 23344577766 577777776643211100 011232
Q ss_pred ceehHHHHHHHHh-CCChhHHHHHHHHHHHHHhhhhcchhh---hhhhhhhh
Q psy8107 1156 GLAFIVFTQAIVE-LPGAPFWSIIFFMMLLSLGLGSQIGIL---EGVLCTIF 1203 (1613)
Q Consensus 1156 gL~Fi~lP~af~~-mp~g~l~avLFFl~L~lagltS~isll---E~iVt~l~ 1203 (1613)
.|. -.+|.+ +| .+-..+..+++++.++||.++.. |..+..+.
T Consensus 293 ~l~----~~Af~~~~g--~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 293 ALT----QAAFSTVLG--SWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHH----HHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 232 245554 33 33344556777788899988876 66666666
No 153
>KOG3723|consensus
Probab=91.92 E-value=0.068 Score=65.88 Aligned_cols=98 Identities=22% Similarity=0.303 Sum_probs=68.3
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCC----CCCCceEEEE
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEH----PKRDYIFCLS 79 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy----~KK~nVF~L~ 79 (1613)
++|.|-.||+|... -|.|+..|++|.|..|.+.|....... . ..+|+|..-.-.++-.. ..-+-.|.+.
T Consensus 737 iEGQLKEKKGrWRf--~kRW~TrYFTLSgA~L~~~kg~s~~dS--~---~~~IDl~~IRSVk~v~~kr~~rslpKAFEIF 809 (851)
T KOG3723|consen 737 IEGQLKEKKGRWRF--IKRWKTRYFTLSGAQLLFQKGKSKDDS--D---DCPIDLSKIRSVKAVAKKRRDRSLPKAFEIF 809 (851)
T ss_pred hcchhhhhccchhh--hhhhccceEEecchhhhcccCCCCCCC--C---CCCccHHHhhhHHHHHhhhhhcccchhhhee
Confidence 35666666665433 356999999999999999886643322 1 14576664333332111 1124579999
Q ss_pred cCCCCeEEeecCCHHHHHHHHHHHHHHHHh
Q psy8107 80 TAFGDAYLFQAPCQVELENWVNSIHSACAA 109 (1613)
Q Consensus 80 t~dg~~yLFQA~~~~em~~Wi~~I~~aaa~ 109 (1613)
|+|.. |.+.|+|++..++|+..++-|.|-
T Consensus 810 TAD~T-~ILKaKDeKNAEEWlqCL~IavAH 838 (851)
T KOG3723|consen 810 TADKT-YILKAKDEKNAEEWLQCLNIAVAH 838 (851)
T ss_pred ecCce-EEeecccccCHHHHHHHHHHHHHH
Confidence 99976 999999999999999999988773
No 154
>KOG1090|consensus
Probab=91.88 E-value=0.12 Score=67.10 Aligned_cols=91 Identities=24% Similarity=0.370 Sum_probs=72.8
Q ss_pred ccceEEecccccccccCCCceEEEEEEeC--CeEEEecCCCcCCCCCCCCCCceeEeCce--EEeeCCCCCCCCceEEEE
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKG--TTLLFYPCDSREGRSVDAAPKHLIIVDGA--IMQPIPEHPKRDYIFCLS 79 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG--~~L~fyKd~~~~~~~~~~~p~~~I~l~~~--~~~~a~dy~KK~nVF~L~ 79 (1613)
..|+|.+|+.|. +.||..|+||-. +.|++|.|.. +..|++.|+|... .+-.++.-..+|--|-|+
T Consensus 1636 ~eG~LyKrGA~l-----K~Wk~RwFVLd~~khqlrYYd~~e------dt~pkG~IdLaevesv~~~~~k~vdekgffdlk 1704 (1732)
T KOG1090|consen 1636 PEGYLYKRGAKL-----KLWKPRWFVLDPDKHQLRYYDDFE------DTKPKGCIDLAEVESVALIGPKTVDEKGFFDLK 1704 (1732)
T ss_pred cccchhhcchhh-----cccccceeEecCCccceeeecccc------cccccchhhhhhhhhhcccCccccCccceeeee
Confidence 367787777664 569999999984 6999998863 4568888888754 333446777889999999
Q ss_pred cCCCCeEEeecCCHHHHHHHHHHHHHH
Q psy8107 80 TAFGDAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 80 t~dg~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
|.. +.|=|=|.|..+.+.|+..|...
T Consensus 1705 tt~-rvynf~a~nin~AqqWve~iqsc 1730 (1732)
T KOG1090|consen 1705 TTN-RVYNFCAQNINLAQQWVECIQSC 1730 (1732)
T ss_pred hhh-HHHHHHhccchHHHHHHHHHHHh
Confidence 987 78999999999999999999865
No 155
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=91.84 E-value=2.6 Score=53.23 Aligned_cols=54 Identities=17% Similarity=0.480 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChh
Q psy8107 1003 WWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAG 1056 (1613)
Q Consensus 1003 ~~l~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~ 1056 (1613)
-..++|.++.|++-..++++|.+...|...+....-+++++.++++.+..-|..
T Consensus 169 t~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~ 222 (497)
T COG1953 169 TLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGS 222 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCc
Confidence 356788999999999999999999999866665555678888999988876653
No 156
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=91.79 E-value=0.94 Score=44.52 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=37.1
Q ss_pred eeEEEEecCC--------ChhhhcCCC--CCCEEEEEcCeecCCCCHHHHHHHHhc--CCeEEEEEeecC
Q psy8107 389 CCYVSRVEDK--------SVAMHNGLI--KGDEIMVINGAIVSDLDMMYLESVLQE--ELSLCMMMRSSR 446 (1613)
Q Consensus 389 ~~~Vs~V~~g--------g~A~~~GL~--~GDeIl~vNg~~v~~l~~~~~~~ll~~--~~~l~L~vr~~~ 446 (1613)
++-|+++-+| ||-.+.|+. +||.|+.|||++|..-. .+..+|.. ++.+.|+|.+..
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-ST
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCC
Confidence 4778888887 666777776 89999999999998652 36667633 388999997654
No 157
>KOG3523|consensus
Probab=91.70 E-value=0.24 Score=62.08 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=66.1
Q ss_pred CccccceEEeccc---ccccccCCCceEEEEEEeCCeEEEecCCCcCCC-CCCCCCCceeEeCceE--Ee---eCCCCCC
Q psy8107 1 FLSVKKWLLRKKH---QIELARKRGWKGYWVCLKGTTLLFYPCDSREGR-SVDAAPKHLIIVDGAI--MQ---PIPEHPK 71 (1613)
Q Consensus 1 ~L~~Kg~L~~K~~---k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~-~~~~~p~~~I~l~~~~--~~---~a~dy~K 71 (1613)
||..+|-|..=.. -...++|+.-|.+|+-|=.+.|.+-|.+....- -.+..+...|.+..+- .. .+..-..
T Consensus 474 wLvk~GELt~l~~~~~s~~l~~k~~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~ 553 (695)
T KOG3523|consen 474 WLVKRGELTQLVERRASPLLFSKRLSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSS 553 (695)
T ss_pred hhhhccccceeecccccchhhcccccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCccccc
Confidence 4555555533221 223567888899999999999999887644221 1123344444444332 11 1122346
Q ss_pred CCceEEEEc---CC--CCeEEeecCCHHHHHHHHHHHH
Q psy8107 72 RDYIFCLST---AF--GDAYLFQAPCQVELENWVNSIH 104 (1613)
Q Consensus 72 K~nVF~L~t---~d--g~~yLFQA~~~~em~~Wi~~I~ 104 (1613)
++|+|.|+. .+ -.+||++|+++.||+.||.++.
T Consensus 554 ~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 554 RPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred ccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence 789999754 34 3689999999999999999885
No 158
>KOG3938|consensus
Probab=90.40 E-value=1.7 Score=49.92 Aligned_cols=130 Identities=18% Similarity=0.268 Sum_probs=90.9
Q ss_pred EEEecCCCcHHHHHHhHccccccCCcc-cee-------eeeeecccccccccCCCchhhHHHhhhccceeeecccceEEE
Q psy8107 288 HVYLKDSMTVEEFLANACSRKNLNPME-HFV-------RVKKRREMEDHNYFVPPRGDLIETYLSTHEVVEVCAKILYQV 359 (1613)
Q Consensus 288 ~~~~~~~~~~~~~l~~~c~~~~l~~~~-~~~-------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~iEv~~~~~~~v 359 (1613)
+-.|..-..++|+-..++....+.|.+ -|+ .+++..++| --.+|.| ..| .-...+-|
T Consensus 66 tg~Ie~fsnv~ELY~kIAe~F~Is~~dIlfcTlNshKvDM~~llgGq------igleDfi----FAH-----vkGq~kEv 130 (334)
T KOG3938|consen 66 TGRIEGFSNVRELYQKIAEAFDISPDDILFCTLNSHKVDMKRLLGGQ------IGLEDFI----FAH-----VKGQAKEV 130 (334)
T ss_pred cceecccccHHHHHHHHHHHhcCCccceEEEecCCCcccHHHHhcCc------cChhhhh----hhh-----hcCcceeE
Confidence 345667788999999999999998877 233 344444433 1123333 212 11344567
Q ss_pred EEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhh-cCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC---
Q psy8107 360 ELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMH-NGLIKGDEIMVINGAIVSDLDMMYLESVLQEE--- 435 (1613)
Q Consensus 360 ~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~-~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~--- 435 (1613)
++.|++ +.+|.+++- |+ .-. -||.++++||.-.+ .-+.+||-|=.|||.++-+.-|=||-++|++=
T Consensus 131 ~v~Kse--dalGlTITD----NG-~Gy---AFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg 200 (334)
T KOG3938|consen 131 EVVKSE--DALGLTITD----NG-AGY---AFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG 200 (334)
T ss_pred EEEecc--cccceEEee----CC-cce---eeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence 778887 789999876 22 111 49999999999865 57899999999999999999999999999643
Q ss_pred CeEEEEE
Q psy8107 436 LSLCMMM 442 (1613)
Q Consensus 436 ~~l~L~v 442 (1613)
...+|++
T Consensus 201 e~ftlrL 207 (334)
T KOG3938|consen 201 ETFTLRL 207 (334)
T ss_pred CeeEEEe
Confidence 4455544
No 159
>TIGR00930 2a30 K-Cl cotransporter.
Probab=89.58 E-value=4.2 Score=56.10 Aligned_cols=113 Identities=9% Similarity=0.132 Sum_probs=52.4
Q ss_pred HHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCC--hhcccee--------eeccccccccChhHHHHHHh
Q psy8107 1012 AWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG--AGAGLVH--------MYTPKVEKLLDPNVWLDAAT 1081 (1613)
Q Consensus 1012 ~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~G--a~~Gl~~--------lf~Pd~s~L~~~~vW~~A~~ 1081 (1613)
+.+++.++...|++.++|+..++..+-++.++++++-++.-+. ...|+.. -+.|+|... ...+..+++
T Consensus 210 ~l~ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~--~~~f~~~~a 287 (953)
T TIGR00930 210 TVVVLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGP--EGGFFSLFG 287 (953)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCc--ccHHHHHHH
Confidence 3344555667899999988665544433333333333322111 1112111 112222211 112556666
Q ss_pred hHHHhhcccccceehhcccc-CCCCccccceehhhhhHHHHHHHHHH
Q psy8107 1082 QVFYSFGLAFGSLIAFGSYN-QPNNNCVRDVIMVSICNALTAIYASV 1127 (1613)
Q Consensus 1082 QaFfSLslG~G~mitygSY~-~~~~ni~rda~~v~~~n~~vSllAgl 1127 (1613)
-.|++. .|+-....++.=. +.+.|+.+..++..++.+++-++..+
T Consensus 288 i~F~A~-tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 288 IFFPSV-TGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHHHHH-HHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 666552 2333333333333 23556777766666655555555543
No 160
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=89.37 E-value=6.7 Score=48.95 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=76.1
Q ss_pred ChhHHHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhccccccccccCCCceecc
Q psy8107 1072 DPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIA 1151 (1613)
Q Consensus 1072 ~~~vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~~~~i~~~~ 1151 (1613)
++..+..|+--.++|++ -..++.++..|.+.+..-.|.++++...-.++..+ +-.|+++|....+ +.....
T Consensus 182 ~~~~~~~~lPv~~~Sf~-f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl--~w~~~~lg~l~~~------~~~~~~ 252 (394)
T PF03222_consen 182 DWSYILPALPVLVFSFG-FHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYL--LWVFSILGSLPRE------QFAEAI 252 (394)
T ss_pred cHHHHHHHHHHHHHHHH-HHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHH------HHHHHH
Confidence 45566688889999888 45667888888887766666655554333332211 2234555533221 111122
Q ss_pred cCCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcccc
Q psy8107 1152 AEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIF 1208 (1613)
Q Consensus 1152 ~~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~~ 1208 (1613)
++|.++ ..+-.++.+...++....+.-+.-++|=+||-++..-.....+.|.+++
T Consensus 253 ~~~~~~--~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 253 AQGGNV--SALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred hcCCCh--HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 223221 2233455666666777777666677777888888888888888887766
No 161
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=89.12 E-value=0.46 Score=46.19 Aligned_cols=40 Identities=10% Similarity=0.343 Sum_probs=36.3
Q ss_pred ceEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCcc
Q psy8107 275 KSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPME 314 (1613)
Q Consensus 275 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~ 314 (1613)
....|.||||+.++|-++..+++++||+++|++-+|+...
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 3568999999999999999999999999999999997543
No 162
>PRK00701 manganese transport protein MntH; Reviewed
Probab=88.88 E-value=8.9 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHhhhhcchh
Q psy8107 1172 APFWSIIFFMMLLSLGLGSQIGI 1194 (1613)
Q Consensus 1172 g~l~avLFFl~L~lagltS~isl 1194 (1613)
|++...+|-+.++.+|++|.+..
T Consensus 305 G~~a~~lFaiGL~aag~sS~i~~ 327 (439)
T PRK00701 305 GAAAATLFGIALLASGLSSTVVG 327 (439)
T ss_pred hHHHHHHHHHHHHHhHhHHHhHH
Confidence 67777888888999999998763
No 163
>KOG1320|consensus
Probab=88.73 E-value=0.75 Score=57.62 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=44.8
Q ss_pred eeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcCC---eEEEEEee
Q psy8107 389 CCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEEL---SLCMMMRS 444 (1613)
Q Consensus 389 ~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~~---~l~L~vr~ 444 (1613)
.++|++|.||++|.+.|+++||.|..|||++|.+ ..++.+++..+. +|.+..++
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n--~~~l~~~i~~~~~~~~v~vl~~~ 455 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKN--LKHLYELIEECSTEDKVAVLDRR 455 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEeec--hHHHHHHHHhcCcCceEEEEEec
Confidence 4799999999999999999999999999999875 456777876553 67666554
No 164
>TIGR00909 2A0306 amino acid transporter.
Probab=88.28 E-value=7.4 Score=48.66 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=81.2
Q ss_pred HHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChhccceeeeccccccccChhHHHHHHhhHHHhhccccc
Q psy8107 1013 WIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFG 1092 (1613)
Q Consensus 1013 w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~lf~Pd~s~L~~~~vW~~A~~QaFfSLslG~G 1092 (1613)
.++..+...+|++..+|+..+...+-++.++++++-++...+.. .+.|-+. .....|..|+..++|++. |+-
T Consensus 141 ~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~af~-G~e 212 (429)
T TIGR00909 141 VLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASN-----NYTPFMP--MGFGGVGAATALVFFAFI-GFE 212 (429)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHH-----hcCCCCC--CcHHHHHHHHHHHHHHHh-hHH
Confidence 33445567779999998876655554433333222222111111 1111111 134567899999999986 888
Q ss_pred ceehhccccCC-CCccccceehhhhhHHHHHHHHHHHHHhhhccccccccccCCCceecccCCCceehHHHHHHHHhCCC
Q psy8107 1093 SLIAFGSYNQP-NNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPG 1171 (1613)
Q Consensus 1093 ~mitygSY~~~-~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~~~~i~~~~~~G~gL~Fi~lP~af~~mp~ 1171 (1613)
....++.-.+. +.|+.|..++-.++..++-++..+++..+... +++.. +++ .+..++.+. +
T Consensus 213 ~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~------------~~~~~-~~~----~~~~~~~~~-~ 274 (429)
T TIGR00909 213 AISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPW------------RQLAG-STA----PLSLVGYDL-G 274 (429)
T ss_pred HHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCH------------HHhCC-CCc----HHHHHHHHh-C
Confidence 88888777765 34566655544444444444443333322211 11111 111 123344443 3
Q ss_pred hhHHHHHHHHHHHHHhhhhcchhhh
Q psy8107 1172 APFWSIIFFMMLLSLGLGSQIGILE 1196 (1613)
Q Consensus 1172 g~l~avLFFl~L~lagltS~isllE 1196 (1613)
++.++.+..+..++..+++..+.+-
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (429)
T TIGR00909 275 QGIGGLILTAGAVFSIASVMLAGIY 299 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555656666666666666655443
No 165
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.99 E-value=2 Score=43.21 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=47.9
Q ss_pred ceEEEEEEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHHHHH
Q psy8107 1328 EIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQIIR 1396 (1613)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1396 (1613)
.-++++..||+..+||+...... +...-|++. -+++.|+|+.+|+|.|.+.++.|.+-|.
T Consensus 39 ~~y~~~~~i~L~~~~V~~~~~~~-~~~~~F~I~--------~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 39 NSFRILGHLPLRGMLTEESEHEW-GVPHCFTIF--------GGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred ceEEEEEEEEcCceEEeeccCCc-CCceeEEEE--------cCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 35788999999999999865422 233467777 3468899999999999999999998775
No 166
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=87.29 E-value=6.3 Score=50.23 Aligned_cols=107 Identities=8% Similarity=0.143 Sum_probs=58.7
Q ss_pred HHHHhhhcccccceeeeeehhhH---HHHHHHHHHHHhccCCChhccceeeec----cccccccChhHHHHHHhhHHHhh
Q psy8107 1015 IVFFIVMKGIQSSGRVVYFTSMF---PYIVLTIFFIRGITLPGAGAGLVHMYT----PKVEKLLDPNVWLDAATQVFYSF 1087 (1613)
Q Consensus 1015 iv~~~v~kGI~~~gKv~~~~~l~---P~vlL~iLlir~ltL~Ga~~Gl~~lf~----Pd~s~L~~~~vW~~A~~QaFfSL 1087 (1613)
+......+|++..+|+..+...+ |+++++++.+.. ..+. .....+. |++.. ....+..++..++|++
T Consensus 139 ~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~--~~~~--~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~af 212 (473)
T TIGR00905 139 VFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFW--FKLD--LFTADFWGHDVPSLGS--VFSQVKNTMLVTLWVF 212 (473)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCch--hcccccCccCCCcccc--hHHHHHHHHHHHHHHH
Confidence 35566777999988875544432 222222222211 1111 1111111 22211 2456788889999998
Q ss_pred cccccceehhccccCCCCccccceehhhhhHHHHHHHHHHH
Q psy8107 1088 GLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVV 1128 (1613)
Q Consensus 1088 slG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~ 1128 (1613)
. |+-....++...+.+.|+.|..+.-.++..++-++..++
T Consensus 213 ~-G~e~~~~~a~E~k~~r~iPrai~~~~~i~~~~Yil~~~~ 252 (473)
T TIGR00905 213 I-GIEGAVVSSGRAKNKSDVGKATVLGTLGALVIYILITLL 252 (473)
T ss_pred H-hHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 6 888888888777667777776666555544444444333
No 167
>KOG1738|consensus
Probab=86.81 E-value=0.11 Score=65.41 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=52.5
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEc
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLST 80 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t 80 (1613)
+.|||.|++.- ......|+++|+||+++.||+|..+. ...++..|.+-....+.|.|-.+|++.|.-.-
T Consensus 564 ~qg~~~r~k~~--~~~~~kW~k~~~~l~~~~l~~y~n~~------~~~~e~~i~l~~~~i~~a~e~~~~~~~~~~~~ 632 (638)
T KOG1738|consen 564 RQGWLTRLKLN--HLTQEKWRKIWMVLNDDPLLNYRNHR------VRAAESVIKLPLFTISVAEEVLGKPELTGEKF 632 (638)
T ss_pred hhccchhhccc--hHHHHHhhhheeeecCchhhhhhhhh------hhchhheeeccchhhhhHHHhccCHhhhccch
Confidence 45777777653 23345699999999999999999874 34567789999999999988877777665443
No 168
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=86.66 E-value=23 Score=43.46 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHhCCCh-hHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcccccc
Q psy8107 1163 TQAIVELPGA-PFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKR 1210 (1613)
Q Consensus 1163 P~af~~mp~g-~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~~~r 1210 (1613)
-+++... .| +....+|-+.++.++++|.+...-..-..+.|.+++++
T Consensus 242 ~~~L~~~-~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~ 289 (358)
T PF01566_consen 242 AQALEPL-LGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRW 289 (358)
T ss_pred HHHHHHh-cCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCC
Confidence 3444432 35 68889999999999999999887777777777665544
No 169
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.55 E-value=1.7 Score=43.60 Aligned_cols=56 Identities=7% Similarity=0.121 Sum_probs=46.1
Q ss_pred CCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHHHHHHHHH
Q psy8107 51 APKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107 (1613)
Q Consensus 51 ~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~~aa 107 (1613)
.-...++|++-.++-..|-..=+|.|++.|+.++ +.|||++.++-.+|++.|+.|-
T Consensus 43 ~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~~s-~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 43 VMESTYSLNSVAVVNVKDRENAKKVLKLLIFPES-RIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EEEEEEehHHeEEEecCCCcCcCceEEEEeCCcc-EEEEeCCHHHHHHHHHHHHHHh
Confidence 3345677887666666776667999999999864 8999999999999999999874
No 170
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.31 E-value=3 Score=42.47 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=63.0
Q ss_pred CceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHHH
Q psy8107 22 GWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVN 101 (1613)
Q Consensus 22 ~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~ 101 (1613)
.|.+| .+|=.+.|++.....+. ....-++.++|++-.+.+..|-.+.+|.|.+.-+.-..-++-+.+++|++.|+.
T Consensus 28 ~~eRy-LvLFp~~LlilS~s~r~---sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~ 103 (111)
T cd01225 28 KRERY-LVLFPNVLLMLSASPRM---SGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVE 103 (111)
T ss_pred cceeE-EEEcCceEEEEEcCCCc---cceEEeeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHH
Confidence 45555 77777777777653221 123445678899888888877778999999999999999999999999999999
Q ss_pred HHHH
Q psy8107 102 SIHS 105 (1613)
Q Consensus 102 ~I~~ 105 (1613)
.++.
T Consensus 104 hL~~ 107 (111)
T cd01225 104 LLNA 107 (111)
T ss_pred HHHh
Confidence 9875
No 171
>KOG3519|consensus
Probab=86.15 E-value=0.23 Score=66.52 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=98.0
Q ss_pred hhhhhhhheeeeccccccccccCccCCCCCCccceEEEEEEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceE
Q psy8107 1295 FVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVY 1374 (1613)
Q Consensus 1295 w~fitPvill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1374 (1613)
+.++.+...+|......++....-.+...+.++++++..++.|++.++.|..+.++++..++|+.||+-+..+++++..+
T Consensus 582 ~~l~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~ 661 (756)
T KOG3519|consen 582 FFLFDNQLVYCKRSSTSRSLLPSFRPRLASDSVDPFDNDGTKPADILVSRDNAFAGASLSTLTSEIHTSSNSSITPSSPL 661 (756)
T ss_pred heecccceeEeeccccccccccccCccccccccccccccccCccchhhhhhhhhhccccccCcchhcccccccCCCCCce
Confidence 45566778888887777776665456678999999999999999999999999999888899999999999999999999
Q ss_pred EeecCChHHHHHHHHHHHHHHHHhhhccC
Q psy8107 1375 VLSNSTAEFRNAFLKTIRQIIRESVRNMS 1403 (1613)
Q Consensus 1375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1403 (1613)
++++...+.++.+-|.+..+++|.++|+.
T Consensus 662 l~~~~~~~~~~~~~~~~~~~i~e~~~~q~ 690 (756)
T KOG3519|consen 662 LRATANEKSNTQLSKETGSLIYEEERNQS 690 (756)
T ss_pred eeehhcccccccccccccchHHHhhhhhH
Confidence 99999999999999999999999999986
No 172
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=86.02 E-value=9.1 Score=48.14 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=60.1
Q ss_pred HHhhHHHhhcccccceehhccccCCCCcccc--ceehhhhhHHH-HHHHHHHHHHhhhccccccccccCCCceecccCCC
Q psy8107 1079 AATQVFYSFGLAFGSLIAFGSYNQPNNNCVR--DVIMVSICNAL-TAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGT 1155 (1613)
Q Consensus 1079 A~~QaFfSLslG~G~mitygSY~~~~~ni~r--da~~v~~~n~~-vSllAgl~IFsilG~~a~~~~~~~~~i~~~~~~G~ 1155 (1613)
.+.=..||--.|+|.-..-.+-.+-++.+-. -+.+-+++|++ ++.+.+++|...--+.. . ...+|.
T Consensus 251 Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~-------~----~~~~g~ 319 (425)
T TIGR00835 251 GVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNN-------G----EGLSGA 319 (425)
T ss_pred hhHHHHhccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCC-------C----CCCcHH
Confidence 3444678888888888777666665555432 23334467655 46677777664321110 0 001232
Q ss_pred ceehHHHHHHHHh-CCChhHHHHHHHHHHHHHhhhhcchhh---hhhhhhhhh
Q psy8107 1156 GLAFIVFTQAIVE-LPGAPFWSIIFFMMLLSLGLGSQIGIL---EGVLCTIFD 1204 (1613)
Q Consensus 1156 gL~Fi~lP~af~~-mp~g~l~avLFFl~L~lagltS~isll---E~iVt~l~D 1204 (1613)
.|.- .+|.+ +| .+-..+.-+++++.++||.++.. |..+..+..
T Consensus 320 ~lt~----~af~~~~g--~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~ 366 (425)
T TIGR00835 320 QLTQ----QALSYGLG--SFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKG 366 (425)
T ss_pred HHHH----HHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222 44555 32 22334456677788888888875 666666643
No 173
>PF15406 PH_6: Pleckstrin homology domain
Probab=84.91 E-value=1.9 Score=43.68 Aligned_cols=69 Identities=26% Similarity=0.479 Sum_probs=51.0
Q ss_pred EEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHHHHHH
Q psy8107 26 YWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIH 104 (1613)
Q Consensus 26 ~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~ 104 (1613)
-|+.=.|--|+||-.. .....|.+.|+|.++. ++..|- .|=|.++. .|...-|||.+..|.++||..|.
T Consensus 42 AwAsqTGKGLLF~~K~-----~dka~P~GiinLadas-e~~~~g---~~kF~f~~-~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKA-----EDKASPSGIINLADAS-EPEKDG---SNKFHFKI-KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred hhhhccCceEEEEecc-----ccccCCcceEehhhcc-ccccCC---CceEEEEe-CCceeeeecCCHHHhccHHHHhh
Confidence 4677789888888742 1224688899998643 333333 45566666 89999999999999999999885
No 174
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.90 E-value=3.5 Score=42.53 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=51.0
Q ss_pred ceEEEEEEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHHHHHH
Q psy8107 1328 EIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQIIRE 1397 (1613)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1397 (1613)
..+.|..-|++.++++......| .+=+|+.+-+.. +++.+|+|..+++|.|++.++.|++||.+
T Consensus 51 ~~Y~yK~~ikls~l~l~e~v~gd---~~kF~i~~~~~~---~~~~~~ilqA~s~e~K~~W~~~I~~il~~ 114 (114)
T cd01232 51 PKYIYKSKLQVSKMGLTEHVEGD---PCRFALWSGDPP---ISDNRIILKANSQETKQEWVKKIREILQE 114 (114)
T ss_pred eeEEEecceeeeeeEeEEccCCC---CceEEEEeCCCC---CCceEEEEECCCHHHHHHHHHHHHHHhhC
Confidence 45889999999999998876533 455666664432 25799999999999999999999999864
No 175
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=83.75 E-value=4.4 Score=40.65 Aligned_cols=61 Identities=7% Similarity=0.244 Sum_probs=52.0
Q ss_pred eEEEEEEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHHHHHH
Q psy8107 1329 IIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQIIRE 1397 (1613)
Q Consensus 1329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1397 (1613)
-++|+--|.+..++|......| .+-++++|.+ .|+..|.|+.+++|.|+..++.|+.+|-|
T Consensus 37 ~y~~K~~i~~~~l~i~e~~~~d---~~~F~v~~~~-----~p~~~~~l~A~s~e~K~~W~~~i~~~i~~ 97 (97)
T cd01222 37 KYQFKAYIPCKNLMLVEHLPGE---PLCFRVIPFD-----DPKGALQLTARNREEKRIWTQQLKRAMLQ 97 (97)
T ss_pred eeEEEEEEEecceEEecCCCCC---CcEEEEEecC-----CCceEEEEEecCHHHHHHHHHHHHHHhhC
Confidence 5999999999999999876633 4667888876 57789999999999999999999998743
No 176
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=83.68 E-value=3.1 Score=42.25 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=47.9
Q ss_pred ceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHHHH
Q psy8107 23 WKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNS 102 (1613)
Q Consensus 23 Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~ 102 (1613)
+|+.|++|+..-=++|=|... -.-++-|.+...+-... |....|.+.|+ ++.|.|...+.. ...|+++
T Consensus 27 ~kkR~liLTd~PrL~Yvdp~~------~~~KGeI~~~~~l~v~~----k~~~~F~I~tp-~RtY~l~d~~~~-A~~W~~~ 94 (104)
T PF14593_consen 27 AKKRQLILTDGPRLFYVDPKK------MVLKGEIPWSKELSVEV----KSFKTFFIHTP-KRTYYLEDPEGN-AQQWVEA 94 (104)
T ss_dssp EEEEEEEEETTTEEEEEETTT------TEEEEEE--STT-EEEE----CSSSEEEEEET-TEEEEEE-TTS--HHHHHHH
T ss_pred EEEEEEEEccCCEEEEEECCC------CeECcEEecCCceEEEE----ccCCEEEEECC-CcEEEEECCCCC-HHHHHHH
Confidence 689999999773344444422 12335677775544443 44569999999 899999986655 5669999
Q ss_pred HHHHHH
Q psy8107 103 IHSACA 108 (1613)
Q Consensus 103 I~~aaa 108 (1613)
|+.+-.
T Consensus 95 I~~~~~ 100 (104)
T PF14593_consen 95 IEEVKK 100 (104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 177
>PRK10483 tryptophan permease; Provisional
Probab=82.78 E-value=21 Score=44.98 Aligned_cols=125 Identities=17% Similarity=0.204 Sum_probs=66.9
Q ss_pred hHHHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHH-HHHHhhhccccccccccCCCceeccc
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYAS-VVVFAILGFKAMSNAAEGTGLAFIAA 1152 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAg-l~IFsilG~~a~~~~~~~~~i~~~~~ 1152 (1613)
..+..|+--.++|.|-- +++.++-.|.+.+.+-.|.+++ ..+++.++.- +=.++++|....+ ++.....
T Consensus 192 ~~~~~alPvl~~SFgfh-~iIPsl~~y~~~d~~kir~~I~---iGs~Iplv~yl~W~~~~lg~l~~~------~~~~~~~ 261 (414)
T PRK10483 192 PYLLMTLPFCLASFGYH-GNVPSLMKYYGKDPKTIVKCLV---YGTLMALALYTIWLLATMGNIPRP------EFIGIAE 261 (414)
T ss_pred HHHHHHHHHHHhhccCC-CcchHHHHHhCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHH
Confidence 33447777788887765 6777777776544333333333 3333333332 2234556544321 0111111
Q ss_pred CCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcccccc
Q psy8107 1153 EGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKR 1210 (1613)
Q Consensus 1153 ~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~~~r 1210 (1613)
+|..+ -.+-.++++...+...+.++=+.-++|=.||-++..-...+.+.|.+++++
T Consensus 262 ~~~ni--~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~ 317 (414)
T PRK10483 262 KGGNI--DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDD 317 (414)
T ss_pred cCCCh--HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22221 122245555445555555544455566678888888888889999776654
No 178
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=82.62 E-value=3.2 Score=49.21 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=48.4
Q ss_pred ceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC---CeEEEEEeecCCCCCC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE---LSLCMMMRSSRTEPPE 451 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~---~~l~L~vr~~~~~p~~ 451 (1613)
.++||..|.++++|. .-|..||.|+.|||+++.. .+|+.+.+++. .++++..+|....|..
T Consensus 130 ~gvyv~~v~~~~~~~-gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~ 193 (342)
T COG3480 130 AGVYVLSVIDNSPFK-GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNETPEI 193 (342)
T ss_pred eeEEEEEccCCcchh-ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccCCCce
Confidence 348999999998774 5589999999999999864 56777777544 8899999987666653
No 179
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=82.41 E-value=3 Score=46.46 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=41.1
Q ss_pred ceEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccceeeeeeecc
Q psy8107 275 KSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRRE 324 (1613)
Q Consensus 275 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~~~~~~~~ 324 (1613)
..++|.||||+...+.+.+..||+|++..+|+.-+|. ..+|.-|....+
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~-~~~~F~L~~~~~ 52 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR-ESEYFGLQFEDP 52 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC-ccceeEEEEEcC
Confidence 4679999999999999999999999999999999994 455555554444
No 180
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=81.82 E-value=21 Score=44.93 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChhccceeeeccccccc--cChhHHHHHHhhH
Q psy8107 1006 VLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKL--LDPNVWLDAATQV 1083 (1613)
Q Consensus 1006 ~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~lf~Pd~s~L--~~~~vW~~A~~Qa 1083 (1613)
++++++.| ++.+...+|+|..+++..+...+-++.++++.+.+...-.. +. +.++|... .+...|..|+..+
T Consensus 123 ~~~~~i~~-~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~-~~----~~~~~~~~~~~~~~~~~~a~~~~ 196 (435)
T PRK10435 123 IACIAIVW-VFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDA-AT----YAANWNTSDTTDGHAIIKSILLC 196 (435)
T ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-Hh----hcccccCCCCchHHHHHHHHHHH
Confidence 34455566 44556778999887764332221111112122211110000 01 12333321 2357889999999
Q ss_pred HHhhcccccceehhccccCC-CCccccceehhhhhHHHHHHHHHHHHHhhh
Q psy8107 1084 FYSFGLAFGSLIAFGSYNQP-NNNCVRDVIMVSICNALTAIYASVVVFAIL 1133 (1613)
Q Consensus 1084 FfSLslG~G~mitygSY~~~-~~ni~rda~~v~~~n~~vSllAgl~IFsil 1133 (1613)
+|++ .|+....+++.-.+. +.|+.|..+...+.-+++-++..+++...+
T Consensus 197 ~faf-~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 197 LWAF-VGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHH-hhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999 788888888777765 468888777666655555555555444333
No 181
>PLN02866 phospholipase D
Probab=81.79 E-value=5 Score=54.57 Aligned_cols=81 Identities=17% Similarity=0.321 Sum_probs=55.8
Q ss_pred CCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeC---------ceEEeeCCCC---CCCCceEEEEcCCCCeEEe
Q psy8107 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVD---------GAIMQPIPEH---PKRDYIFCLSTAFGDAYLF 88 (1613)
Q Consensus 21 R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~---------~~~~~~a~dy---~KK~nVF~L~t~dg~~yLF 88 (1613)
-.|.+.|+|||.+-|.+.+|+.... +...+-.. +.....+.+. +--+|-|++.+.. +...|
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~------~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~-r~l~l 288 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAK------PLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGN-RSIRL 288 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCc------eeEEEEEecccccccCCCcceeecccccccCCCcceEEEecCc-eEEEE
Confidence 4599999999988888877765432 22222222 1112222233 2347889998766 56899
Q ss_pred ecCCHHHHHHHHHHHHHHHH
Q psy8107 89 QAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 89 QA~~~~em~~Wi~~I~~aaa 108 (1613)
-+.+..++..|+.+|+.++.
T Consensus 289 ~~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 289 RTKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred EECCHHHHHHHHHHHHHHHh
Confidence 99999999999999999974
No 182
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.68 E-value=8.3 Score=39.49 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=60.6
Q ss_pred Cce-EEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCC------CceEEEEcCC-CCeEEeecCCH
Q psy8107 22 GWK-GYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKR------DYIFCLSTAF-GDAYLFQAPCQ 93 (1613)
Q Consensus 22 ~Wk-~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK------~nVF~L~t~d-g~~yLFQA~~~ 93 (1613)
+|+ ..++-|=...|.+.|.+... .....-++.|.++.+.+.-..|=.+. +|-|+|...+ +.-|+|-|.++
T Consensus 16 g~~q~R~~FLFD~~LI~CKkd~~r--~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~ 93 (109)
T cd01224 16 GWNSSRVLFLFDHQMVLCKKDLIR--RDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSA 93 (109)
T ss_pred CCcccEEEEEecceEEEEeccccc--CCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCH
Confidence 454 45667777777777754332 22344566788888877777666555 8999999888 67899999999
Q ss_pred HHHHHHHHHHHH
Q psy8107 94 VELENWVNSIHS 105 (1613)
Q Consensus 94 ~em~~Wi~~I~~ 105 (1613)
++-+.|+.++..
T Consensus 94 e~K~~Wm~a~~~ 105 (109)
T cd01224 94 ERKHRWLSAFAL 105 (109)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 183
>PRK10655 potE putrescine transporter; Provisional
Probab=81.61 E-value=20 Score=45.07 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=35.6
Q ss_pred hHHHHHHhhHHHhhcccccceehhccccCC-CCccccceehhhhhHHHHHHHHHHH
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFGSYNQP-NNNCVRDVIMVSICNALTAIYASVV 1128 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mitygSY~~~-~~ni~rda~~v~~~n~~vSllAgl~ 1128 (1613)
..+..|+..++|++ .|+.....++.-.+. +.|+.|..+...++..++-++..++
T Consensus 189 ~~~~~~~~~~~~af-~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~ 243 (438)
T PRK10655 189 SAVGSSIAMTLWAF-LGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNV 243 (438)
T ss_pred HHHHHHHHHHHHHH-hhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888 688888777776664 5578777666555555444444433
No 184
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=81.48 E-value=22 Score=45.59 Aligned_cols=116 Identities=11% Similarity=0.092 Sum_probs=63.9
Q ss_pred HHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhcc-C-CChhccceeeeccccccc-cChhHHHHHHhhHHHhhcc
Q psy8107 1013 WIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGIT-L-PGAGAGLVHMYTPKVEKL-LDPNVWLDAATQVFYSFGL 1089 (1613)
Q Consensus 1013 w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~lt-L-~Ga~~Gl~~lf~Pd~s~L-~~~~vW~~A~~QaFfSLsl 1089 (1613)
.++....-..|++..+|+..+...+.++.++++++-++. + .|...... ....|... .+...|..|+..++|++ .
T Consensus 173 i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~a~~~~~~af-~ 249 (501)
T TIGR00911 173 VLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLN--PKNAFEGTETSAGGIVLAFYSGIWAY-G 249 (501)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC--cccccCCCCCcHHHHHHHHHHHHHHH-H
Confidence 335556677899999888766655554433333332221 1 11111110 00011111 23567888999999997 5
Q ss_pred cccceehhccccCC-CCccccceehhhhhHHHHHHHHHHHHHh
Q psy8107 1090 AFGSLIAFGSYNQP-NNNCVRDVIMVSICNALTAIYASVVVFA 1131 (1613)
Q Consensus 1090 G~G~mitygSY~~~-~~ni~rda~~v~~~n~~vSllAgl~IFs 1131 (1613)
|+.....++.-.+. +.|+.|..+...++-.++-++..+++..
T Consensus 250 G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~ 292 (501)
T TIGR00911 250 GWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFT 292 (501)
T ss_pred hHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777766654 4567776666666555555555444433
No 185
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=79.99 E-value=8.6 Score=39.63 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=55.2
Q ss_pred hheeeeccccccccccCccCCCCCCccceEEEEEEeecceEEEecCCcCCCCc-ceEEEEEeecccccCCccceEEeecC
Q psy8107 1301 VVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVLVPVTEVQVRASSAKDMDS-HFLWELIHLRSQIQRRTEKVYVLSNS 1379 (1613)
Q Consensus 1301 vill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1379 (1613)
++++|+-+.. +-++.|.+.+ -++|+-.+++..++|.-. .|+|. ..-|+|++ ++++.|.|++.
T Consensus 31 ~Li~CK~~~~-~~~~~g~~~~-------~y~~k~~~~l~~~~V~d~--~d~~~~knaF~I~~-------~~~~s~~l~Ak 93 (112)
T cd01261 31 LMVLCKSNHG-QPRLPGASSA-------EYRLKEKFFMRKVDINDK--PDSSEYKNAFEIIL-------KDGNSVIFSAK 93 (112)
T ss_pred eEEEEEeccC-cccccccccc-------eEEEEEEEeeeeeEEEEc--CCCcccCceEEEEc-------CCCCEEEEEEC
Confidence 3466775443 2224444322 689999999999999843 44442 34577776 34679999999
Q ss_pred ChHHHHHHHHHHHHHHH
Q psy8107 1380 TAEFRNAFLKTIRQIIR 1396 (1613)
Q Consensus 1380 ~~~~~~~~~~~~~~~~~ 1396 (1613)
++|.|+..++.+-.++-
T Consensus 94 t~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 94 NAEEKNNWMAALISVQT 110 (112)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999998877653
No 186
>PF15408 PH_7: Pleckstrin homology domain
Probab=79.93 E-value=0.77 Score=44.06 Aligned_cols=95 Identities=11% Similarity=0.136 Sum_probs=56.2
Q ss_pred cceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCC-CCc--eEEEEcC
Q psy8107 5 KKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPK-RDY--IFCLSTA 81 (1613)
Q Consensus 5 Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~K-K~n--VF~L~t~ 81 (1613)
+|+|.+-.+ .+-++.++||+|-.+-+|.|+..+.-....-.+..+ .|..++-..--+. --| =|-...+
T Consensus 1 EGYLY~~E~-------~si~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~--s~Pm~~~~~A~~N~Gi~A~G~L~~~~ 71 (104)
T PF15408_consen 1 EGYLYRDED-------SSIQRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVV--SHPMVNFSQAVPNLGINAFGFLMYSP 71 (104)
T ss_pred CCeEEEecc-------chHHHHHHhhhhceeEEecccCCceeeeeehhhhhh--hcccccccccCCCCCeeEEEEEEecC
Confidence 366666433 113455799999999999998764332221111111 1111111111111 122 3556778
Q ss_pred CCCeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 82 FGDAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 82 dg~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
||..--.-|++.+.|++||+++|.-++
T Consensus 72 ~~~~~~~FA~S~~~~~~Wi~~mN~~s~ 98 (104)
T PF15408_consen 72 SRRHVQCFASSKKVCQSWIQVMNSPSF 98 (104)
T ss_pred CcchhhhhhhHHHHHHHHHHHhcChhh
Confidence 888777779999999999999997655
No 187
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=79.89 E-value=8.5 Score=39.78 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=55.0
Q ss_pred eEEEEEEeCCeEEEecCCCcCC--CCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCC--CCeEEeecCCHHHHHHH
Q psy8107 24 KGYWVCLKGTTLLFYPCDSREG--RSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAF--GDAYLFQAPCQVELENW 99 (1613)
Q Consensus 24 k~~~~vLkG~~L~fyKd~~~~~--~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~d--g~~yLFQA~~~~em~~W 99 (1613)
+...+-|=...|.|-|-..... ......-++.|.+.+--.+...|-...++.+..+++. ...|.+||+|.++-+.|
T Consensus 25 ~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W 104 (114)
T cd01232 25 RERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEW 104 (114)
T ss_pred ceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHH
Confidence 3455777777777776543221 1122233467777766555554444566666666664 47999999999999999
Q ss_pred HHHHHHH
Q psy8107 100 VNSIHSA 106 (1613)
Q Consensus 100 i~~I~~a 106 (1613)
+..|+..
T Consensus 105 ~~~I~~i 111 (114)
T cd01232 105 VKKIREI 111 (114)
T ss_pred HHHHHHH
Confidence 9999875
No 188
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=79.79 E-value=31 Score=42.99 Aligned_cols=121 Identities=18% Similarity=0.293 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhhcccccceeeeeehhhHHH-HHHHHHHHHhccCC--ChhccceeeeccccccccChhHHHHHHhhH
Q psy8107 1007 LCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPY-IVLTIFFIRGITLP--GAGAGLVHMYTPKVEKLLDPNVWLDAATQV 1083 (1613)
Q Consensus 1007 l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~-vlL~iLlir~ltL~--Ga~~Gl~~lf~Pd~s~L~~~~vW~~A~~Qa 1083 (1613)
+..++..++......+|+|..+|+..+...+=. +.++++.+-++... +............+....+ . -..++.-+
T Consensus 120 ~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 197 (426)
T PF13520_consen 120 LIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWP-G-FLAGFSVA 197 (426)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSS-H-HHHHHHHH
T ss_pred eeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCcccc-c-hhhHHHHH
Confidence 333444556667778889988887555443333 22222222232222 1111111111111111112 2 24566666
Q ss_pred HHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHh
Q psy8107 1084 FYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFA 1131 (1613)
Q Consensus 1084 FfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFs 1131 (1613)
+|++ .|+.....++.=+|+ .|+.|..++..++..++-++..+++..
T Consensus 198 ~~~~-~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~y~l~~~~~~~ 243 (426)
T PF13520_consen 198 FFAF-SGFEAIASLAEENKN-KTIPRAIIISIIIVAIIYILFSIALLG 243 (426)
T ss_dssp GGGG-TTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Hhhc-ccccccccccccccc-hhheeecccchhHHHHHHhhhhheeee
Confidence 6666 477777777776665 456665555555544444444444333
No 189
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=79.69 E-value=23 Score=44.44 Aligned_cols=108 Identities=20% Similarity=0.337 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChhcccee-eeccccccccChhHHHHHHhh
Q psy8107 1004 WIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVH-MYTPKVEKLLDPNVWLDAATQ 1082 (1613)
Q Consensus 1004 ~l~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~-lf~Pd~s~L~~~~vW~~A~~Q 1082 (1613)
...++.++..++..+...+|++..+++..+....=++.++++.+.++...+...+-.+ .+.+ .-........++.-
T Consensus 133 ~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 209 (466)
T COG0531 133 LIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP---GGGSFGGILAAILL 209 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc---ccchHHHHHHHHHH
Confidence 3344444445556677788999888875554444444444444443333222211001 1111 11122345566666
Q ss_pred HHHhhcccccceehhccccCC-CCccccceehhh
Q psy8107 1083 VFYSFGLAFGSLIAFGSYNQP-NNNCVRDVIMVS 1115 (1613)
Q Consensus 1083 aFfSLslG~G~mitygSY~~~-~~ni~rda~~v~ 1115 (1613)
++|+. .|++....++.=.+. +.|+.|..++..
T Consensus 210 ~~~~f-~G~e~~~~~a~E~knp~r~ip~aii~~~ 242 (466)
T COG0531 210 AFFAF-TGFEAIATLAEEVKNPKRTIPRAIILSL 242 (466)
T ss_pred HHHHh-hcHHHHHHHHHHhcCccccccHHHHHHH
Confidence 66665 577777777744443 344555444433
No 190
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=79.61 E-value=27 Score=44.54 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=22.0
Q ss_pred chhHhHHHH-HhhhcchhhhHHHhhhhccCCChhhhhhh
Q psy8107 878 AFLIPFMVM-LILEGIPLFLIELGIGQKMRLGSLGVWNT 915 (1613)
Q Consensus 878 ~FLIpYli~-l~liGlPll~lElalGQ~~r~g~i~a~~~ 915 (1613)
+.++.|+++ ++.+-+.+.+.|++- ++-..|..-.|-+
T Consensus 48 ~~i~~~~i~gi~~l~~~~~~aEl~s-~~P~~Gg~y~~~~ 85 (482)
T TIGR00907 48 SIVWGWIIAGAGSICIALSLAELSS-AYPTSGGQYFWSA 85 (482)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHh-hCCCCccHHHHHH
Confidence 455566443 344456667788887 4555666666643
No 191
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=79.41 E-value=22 Score=45.25 Aligned_cols=38 Identities=3% Similarity=0.051 Sum_probs=25.5
Q ss_pred HHHHHHhhHHHhhcccccceehhccccCCCCccccceeh
Q psy8107 1075 VWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIM 1113 (1613)
Q Consensus 1075 vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~ 1113 (1613)
.+..|+..++|++. |+-....++...+.+.|+.|....
T Consensus 196 ~~~~~~~~~~~~f~-G~e~~~~~a~e~k~~k~ip~ai~~ 233 (468)
T TIGR03810 196 QVKNMMLVTVWVFI-GIEGASMLSARAEKRSDVGKATVI 233 (468)
T ss_pred HHHHHHHHHHHHHH-hHhHHhhhHhhccCcccchHHHHH
Confidence 45577788888874 777777777766665666665433
No 192
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=79.02 E-value=12 Score=37.64 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=50.5
Q ss_pred EEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCC--CeEEeecCCHHHHHHHHHHH
Q psy8107 26 YWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFG--DAYLFQAPCQVELENWVNSI 103 (1613)
Q Consensus 26 ~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg--~~yLFQA~~~~em~~Wi~~I 103 (1613)
.++-|=...|.+-|.... ...-+..|.+++-......+ .-++-|.+...+. +.|.|||+|+++-+.|+++|
T Consensus 19 R~vFLFe~~ll~~K~~~~-----~y~~K~~i~~~~l~i~e~~~--~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i 91 (97)
T cd01222 19 RLLFLFQTMLLIAKPRGD-----KYQFKAYIPCKNLMLVEHLP--GEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQL 91 (97)
T ss_pred eEEEEecccEEEEEecCC-----eeEEEEEEEecceEEecCCC--CCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHH
Confidence 456666666666664321 23444567766554333322 1279999976653 48999999999999999999
Q ss_pred HHHH
Q psy8107 104 HSAC 107 (1613)
Q Consensus 104 ~~aa 107 (1613)
+.+.
T Consensus 92 ~~~i 95 (97)
T cd01222 92 KRAM 95 (97)
T ss_pred HHHh
Confidence 8763
No 193
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=78.10 E-value=1.8 Score=41.03 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=36.7
Q ss_pred EEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccce-eee
Q psy8107 279 VSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHF-VRV 319 (1613)
Q Consensus 279 v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~-~~~ 319 (1613)
|.||||+..++.|.+..|+.|++..+|+.-+|.-.++| |..
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 78999999999999999999999999999999755555 666
No 194
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.96 E-value=11 Score=39.02 Aligned_cols=85 Identities=13% Similarity=0.222 Sum_probs=61.1
Q ss_pred eEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCC--C----CCCCCceEEEEcCCC-CeEEeecCCHHHH
Q psy8107 24 KGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIP--E----HPKRDYIFCLSTAFG-DAYLFQAPCQVEL 96 (1613)
Q Consensus 24 k~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~--d----y~KK~nVF~L~t~dg-~~yLFQA~~~~em 96 (1613)
+..|+-|=...+.+.|............-++++.++...++... | -++-+|.|.|-..+| ..|.|.+.++++-
T Consensus 21 k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~K 100 (116)
T cd01223 21 KLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHLR 100 (116)
T ss_pred ceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHHH
Confidence 46678888888888886644322233445566766665444431 2 225689999999997 8999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8107 97 ENWVNSIHSACA 108 (1613)
Q Consensus 97 ~~Wi~~I~~aaa 108 (1613)
.+|+.++-.|..
T Consensus 101 ~kWm~al~~a~s 112 (116)
T cd01223 101 KKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHh
Confidence 999999987743
No 195
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=77.90 E-value=2.1 Score=36.51 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=38.0
Q ss_pred EEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccceeeeee
Q psy8107 278 KVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKK 321 (1613)
Q Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~~~~~ 321 (1613)
+|.+++++.+.+.+.+++|+.|++..+|+..+.+|....|-...
T Consensus 1 ~v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~ 44 (69)
T cd00196 1 KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNG 44 (69)
T ss_pred CeEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECC
Confidence 36788999999999999999999999999999888877775443
No 196
>KOG3834|consensus
Probab=77.64 E-value=5.8 Score=48.73 Aligned_cols=90 Identities=22% Similarity=0.117 Sum_probs=59.0
Q ss_pred eeeccc---ceEEEEEEecCCCCc---cceEEEEeecccccccCcceeEEEEecCCChhhhcCCCC-CCEEEEE-cCeec
Q psy8107 349 VEVCAK---ILYQVELQRTTLDHM---WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI-NGAIV 420 (1613)
Q Consensus 349 iEv~~~---~~~~v~l~k~~~~~~---~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~-GDeIl~v-Ng~~v 420 (1613)
+||+-. .+|.|.+.+... -+ +|.+|+.. .. .+.-..--+|=+|.|.++|+.|||++ +|.|+-+ |.
T Consensus 68 ltv~n~kt~~~R~v~I~ps~~-wggqllGvsvrFc--sf-~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~--- 140 (462)
T KOG3834|consen 68 LTVYNSKTQEVRIVEIVPSNN-WGGQLLGVSVRFC--SF-DGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDA--- 140 (462)
T ss_pred EEEEecccceeEEEEeccccc-ccccccceEEEec--cC-ccchhheeeeeecCCCCHHHhcccccccceEecchhh---
Confidence 455543 445556655542 33 78888772 11 12222446899999999999999995 8999988 66
Q ss_pred CCCCHHHHHHHH--hcCCeEEEEEeec
Q psy8107 421 SDLDMMYLESVL--QEELSLCMMMRSS 445 (1613)
Q Consensus 421 ~~l~~~~~~~ll--~~~~~l~L~vr~~ 445 (1613)
..-+.+++..++ .+++.|-|.|.-.
T Consensus 141 ~~~~~eDl~~lIeshe~kpLklyVYN~ 167 (462)
T KOG3834|consen 141 VMHEEEDLFTLIESHEGKPLKLYVYNH 167 (462)
T ss_pred hccchHHHHHHHHhccCCCcceeEeec
Confidence 334556666666 4448898887643
No 197
>PRK10249 phenylalanine transporter; Provisional
Probab=77.31 E-value=30 Score=44.04 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccC-----CChhccceeeec-cccccccChhHHHHHHhhHHHh
Q psy8107 1013 WIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITL-----PGAGAGLVHMYT-PKVEKLLDPNVWLDAATQVFYS 1086 (1613)
Q Consensus 1013 w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL-----~Ga~~Gl~~lf~-Pd~s~L~~~~vW~~A~~QaFfS 1086 (1613)
++++.+.-..|++..+++-.+...+..+.++++++.++.+ ++...+...++. +++. -.....+..++..++|+
T Consensus 143 ~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~a 221 (458)
T PRK10249 143 FIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFF-ATGWNGLILSLAVIMFS 221 (458)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCC-CCcHHHHHHHHHHHHHH
Confidence 4455566778999998876655544443332222222111 111122222221 1110 01235578899999999
Q ss_pred hcccccceehhccccCC-CCccccceehhhhhHH
Q psy8107 1087 FGLAFGSLIAFGSYNQP-NNNCVRDVIMVSICNA 1119 (1613)
Q Consensus 1087 LslG~G~mitygSY~~~-~~ni~rda~~v~~~n~ 1119 (1613)
+ .|+.....++.=.+. +.|+.|......+.-.
T Consensus 222 f-~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~ 254 (458)
T PRK10249 222 F-GGLELIGITAAEARDPEKSIPKAVNQVVYRIL 254 (458)
T ss_pred H-cCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHH
Confidence 7 566666666655443 5567766555443333
No 198
>PRK15049 L-asparagine permease; Provisional
Probab=77.18 E-value=22 Score=45.74 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=47.1
Q ss_pred HHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccC--CC-----hhccceeeecccccccc-C-hhHHHHHHhhH
Q psy8107 1013 WIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITL--PG-----AGAGLVHMYTPKVEKLL-D-PNVWLDAATQV 1083 (1613)
Q Consensus 1013 w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL--~G-----a~~Gl~~lf~Pd~s~L~-~-~~vW~~A~~Qa 1083 (1613)
.+++..+-..|+|..+++-.+...+-++.++++++.++.+ .+ ...+..+.. +..... + ...++.++..+
T Consensus 152 ~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~--~~~~~~p~g~~~~~~~~~~~ 229 (499)
T PRK15049 152 LTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLIT--DNGGFFPHGLLPALVLIQGV 229 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccc--CCCCcccccHHHHHHHHHHH
Confidence 3345566778899888876665544443333322222211 11 111121111 111111 1 12345566778
Q ss_pred HHhhcccccceehhccccC-CCCcccccee
Q psy8107 1084 FYSFGLAFGSLIAFGSYNQ-PNNNCVRDVI 1112 (1613)
Q Consensus 1084 FfSLslG~G~mitygSY~~-~~~ni~rda~ 1112 (1613)
+|++ .|+.....++.=.+ .+.|+.|...
T Consensus 230 ~faf-~G~e~i~~~aeE~knP~r~iPrAi~ 258 (499)
T PRK15049 230 VFAF-ASIEMVGTAAGECKDPQTMVPKAIN 258 (499)
T ss_pred HHHH-hhHHHHHHHHHHhcChhhHHHHHHH
Confidence 8888 66666666665443 3456666544
No 199
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=76.98 E-value=7.3 Score=51.11 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=64.7
Q ss_pred ccccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCc-eEEe-eCC--CCCCCCceEE
Q psy8107 2 LSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDG-AIMQ-PIP--EHPKRDYIFC 77 (1613)
Q Consensus 2 L~~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~-~~~~-~a~--dy~KK~nVF~ 77 (1613)
..+.||+++=+..+ -|.--=++.|+||+|..|..||++-... ..|-....|.+ |.++ .-. -+.+-=+||+
T Consensus 4 ~~~eGW~y~~g~~k--ig~~~~~~Ry~vl~~~~~~~yK~~P~~~----~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~ 77 (719)
T PLN00188 4 VVYEGWMVRYGRRK--IGRSYIHMRYFVLESRLLAYYKKKPQDN----QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS 77 (719)
T ss_pred ceEeeEEEEEcccc--cccccceeEEEEEecchhhhcccCCccc----cccceeeccCCCceEeecCceEEcCceEEEEE
Confidence 35789999987622 1222246789999999999999864321 33333333332 2222 222 1222234666
Q ss_pred EEcC--CCCeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 78 LSTA--FGDAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 78 L~t~--dg~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
+=+. ..+.-.|.|.|.+|...|+.+|..|+.
T Consensus 78 ~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 110 (719)
T PLN00188 78 VYNKKEKYHRITMAAFNIQEALIWKEKIESVID 110 (719)
T ss_pred EecCCCccccEEEecCCHHHHHHHHHHHHHHHh
Confidence 6333 367788999999999999999999866
No 200
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=76.83 E-value=30 Score=43.62 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=36.3
Q ss_pred hhHHHHHHhhHHHhhcccccceehhccccCC-CCccccceehhhhhHHHHHHHHHHHHHh
Q psy8107 1073 PNVWLDAATQVFYSFGLAFGSLIAFGSYNQP-NNNCVRDVIMVSICNALTAIYASVVVFA 1131 (1613)
Q Consensus 1073 ~~vW~~A~~QaFfSLslG~G~mitygSY~~~-~~ni~rda~~v~~~n~~vSllAgl~IFs 1131 (1613)
...+..|+..++|++. |+.....++.=.+. +.|+.|..+...++.+++-++..++.+.
T Consensus 194 ~~~~~~~~~~~~~af~-G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~ 252 (445)
T PRK11357 194 FMALLAGISATSWSYT-GMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISG 252 (445)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888999985 77777777665543 4567776655555555544444444333
No 201
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=76.59 E-value=3.5 Score=39.97 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=38.3
Q ss_pred ceEEEEcCCCC----eEEEEecCCCcHHHHHHhHcccccc--CCccceee
Q psy8107 275 KSVKVSLPENQ----YAHVYLKDSMTVEEFLANACSRKNL--NPMEHFVR 318 (1613)
Q Consensus 275 ~~~~v~~~~~~----~~~~~~~~~~~~~~~l~~~c~~~~l--~~~~~~~~ 318 (1613)
..++|..+++. ..++.|-+.+|+.||+..++++.++ ||.+++|-
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 35789999988 9999999999999999999999999 66666674
No 202
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=76.40 E-value=27 Score=43.95 Aligned_cols=52 Identities=15% Similarity=0.427 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCCh
Q psy8107 1004 WIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGA 1055 (1613)
Q Consensus 1004 ~l~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga 1055 (1613)
...+++++.|++.......|++...++..+...+-.++.+.+.++.+...+.
T Consensus 136 ~~~~~~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (440)
T PF02133_consen 136 PLWVCFFIFWLIQTLFAIYGMKALRRLAVIAAPILLVVFIGMLIWALSKAGG 187 (440)
T ss_dssp ---HHHHHHHHHHHHHHCTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCc
Confidence 3456777788888888888888877765544333333334555555555444
No 203
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=76.23 E-value=31 Score=41.78 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=54.9
Q ss_pred ceeeeccccccccChhHHHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhc
Q psy8107 1059 LVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILG 1134 (1613)
Q Consensus 1059 l~~lf~Pd~s~L~~~~vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG 1134 (1613)
..+...+|+.+ .+.=|.+|.+..-+.+.++.+++.+.|.-.+...+....++.=+++=++++++.-+..++..+
T Consensus 165 ~~~~a~~~~~~--~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~nlsLi~~~~ 238 (349)
T COG3949 165 LGNAAQIVLTK--QGNWKASAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLINLSLIALYD 238 (349)
T ss_pred ccchhhhcCCc--CCChHHHHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 33445666666 344456777788888899999999999999988888888877777777777766666665554
No 204
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=75.75 E-value=23 Score=45.72 Aligned_cols=113 Identities=12% Similarity=0.223 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhcccccceeeeeeh----hhHHHHHHHHHHHHhccCCChhcccee---eeccccccccChhHHHHH
Q psy8107 1007 LCLLLAWIIVFFIVMKGIQSSGRVVYFT----SMFPYIVLTIFFIRGITLPGAGAGLVH---MYTPKVEKLLDPNVWLDA 1079 (1613)
Q Consensus 1007 l~l~l~w~iv~~~v~kGI~~~gKv~~~~----~l~P~vlL~iLlir~ltL~Ga~~Gl~~---lf~Pd~s~L~~~~vW~~A 1079 (1613)
+.+++.|++. +.-.+|+|..+++..+. .++|.++++++.+..+. .|...+..+ -+.|++..+ ..+. +
T Consensus 126 ~~l~i~~~~t-~~n~~G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~-~g~~~~~~~~~~~~~p~~~~~---~~~~-~ 199 (507)
T TIGR00910 126 AALIIFWALA-FSQFGGTKRTAKIAKAGFFAGILIPAFILFALAAAYFH-GGAPIAIEIDSHAFFPDFSKV---GTLV-V 199 (507)
T ss_pred HHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccccCCcHHhcCCCcccc---cHHH-H
Confidence 4444555544 44677898887764432 23444444433332221 222111111 123555432 1222 2
Q ss_pred HhhHHHhhcccccceehhccccC-CCCccccceehhhhhHHHHHHHHH
Q psy8107 1080 ATQVFYSFGLAFGSLIAFGSYNQ-PNNNCVRDVIMVSICNALTAIYAS 1126 (1613)
Q Consensus 1080 ~~QaFfSLslG~G~mitygSY~~-~~~ni~rda~~v~~~n~~vSllAg 1126 (1613)
+..++|++ .|+-....++.=.+ .+.|+.|..++.+++..++.++..
T Consensus 200 ~~~~~faf-~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 200 FVAFIGAY-MGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHH-hcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHH
Confidence 22234444 35555555555443 345677665554444444444333
No 205
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=75.20 E-value=13 Score=37.82 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=48.9
Q ss_pred eEEEEEEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHHHHHHhhh
Q psy8107 1329 IIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQIIRESVR 1400 (1613)
Q Consensus 1329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1400 (1613)
.++++.++|+..++|+..... .+-..-|.++. ++|.|.+++++++.|...++.|..-|.+.++
T Consensus 41 ~~~~~~~i~L~~~~v~~~~d~-~~~~n~f~I~~--------~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l~ 103 (104)
T cd01218 41 KYNKQHILPLEGVQVESIEDD-GIERNGWIIKT--------PTKSFAVYAATETEKREWMLHINKCVTDLLE 103 (104)
T ss_pred eeeEeeEEEccceEEEecCCc-ccccceEEEec--------CCeEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence 488999999999999855321 22344566554 5789999999999999999999888877654
No 206
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=75.00 E-value=75 Score=40.36 Aligned_cols=47 Identities=11% Similarity=-0.020 Sum_probs=38.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhccc
Q psy8107 1161 VFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEI 1207 (1613)
Q Consensus 1161 ~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~ 1207 (1613)
.+|......-.|+...+++=+.+++|-+|++++++-.....+.+.+.
T Consensus 265 ~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~ 311 (439)
T PRK15433 265 AILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP 311 (439)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34555555567888888999999999999999999999999888755
No 207
>KOG1117|consensus
Probab=74.05 E-value=7.1 Score=51.29 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=60.0
Q ss_pred ceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEE--eeCCC-CC--CCCceEEEEcCCCCeEEeecCCHHHHH
Q psy8107 23 WKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIM--QPIPE-HP--KRDYIFCLSTAFGDAYLFQAPCQVELE 97 (1613)
Q Consensus 23 Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~--~~a~d-y~--KK~nVF~L~t~dg~~yLFQA~~~~em~ 97 (1613)
-.+.||||-|..|++|..+... .|...|.+..-+| ...+| |+ .=.+.|.+=++.++.|+|-+++.+++.
T Consensus 518 ~nr~wcVlg~g~ls~fen~~S~------tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~ 591 (1186)
T KOG1117|consen 518 TNRKWCVLGGGFLSYFENEKST------TPNGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALR 591 (1186)
T ss_pred CCCceEEcCcchhhhhhhcCCC------CCCceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHH
Confidence 4567999999999999988543 4555666665433 33344 42 457899999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8107 98 NWVNSIHSA 106 (1613)
Q Consensus 98 ~Wi~~I~~a 106 (1613)
.|..+|-.+
T Consensus 592 ~wt~aiaKh 600 (1186)
T KOG1117|consen 592 KWTEAIAKH 600 (1186)
T ss_pred HHHHHHHHh
Confidence 999888544
No 208
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=73.97 E-value=20 Score=45.72 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=26.2
Q ss_pred hHHHHHHhhHHHhhcccccceehhccccC-CCCcccccee
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFGSYNQ-PNNNCVRDVI 1112 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mitygSY~~-~~~ni~rda~ 1112 (1613)
..+..|+..++|++. |+-...+++.=.+ .+.|+.|...
T Consensus 211 ~~~~~~~~~~~~af~-G~e~~~~~a~E~knP~r~iPrai~ 249 (469)
T PRK11049 211 SGFFAGFQIAVFAFV-GIELVGTTAAETKDPEKSLPRAIN 249 (469)
T ss_pred HHHHHHHHHHHHHHh-cHHHHHHHHHHhcCHhhHHHHHHH
Confidence 357889999999995 7777776665443 3456666653
No 209
>KOG1421|consensus
Probab=73.94 E-value=5 Score=51.48 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=46.5
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC--CeEEEEEeecCCCCCC
Q psy8107 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE--LSLCMMMRSSRTEPPE 451 (1613)
Q Consensus 390 ~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~--~~l~L~vr~~~~~p~~ 451 (1613)
+-|+.|.++|+|+++ |.+||.+|.||+... .+..++.+++.++ +.|.|++.|.++.-..
T Consensus 305 LvV~~vL~~gpa~k~-Le~GDillavN~t~l--~df~~l~~iLDegvgk~l~LtI~Rggqelel 365 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK-LEPGDILLAVNSTCL--NDFEALEQILDEGVGKNLELTIQRGGQELEL 365 (955)
T ss_pred EEEEEeccCCchhhc-cCCCcEEEEEcceeh--HHHHHHHHHHhhccCceEEEEEEeCCEEEEE
Confidence 578999999999875 899999999997543 3456666677555 8999999988875443
No 210
>PF15404 PH_4: Pleckstrin homology domain
Probab=72.66 E-value=15 Score=41.19 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=27.3
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCC
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCD 41 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~ 41 (1613)
..|.|.+|.+|.. .+++|++||..+.|.+|+.-
T Consensus 1 ~sG~LY~K~~khs-----~F~~~~vvL~~G~Li~f~~~ 33 (185)
T PF15404_consen 1 MSGYLYQKPRKHS-----TFKKYFVVLIPGFLILFQLF 33 (185)
T ss_pred CCceeeecCCCCC-----CceEEEEEEeCCEEEEEEEE
Confidence 3689999987743 49999999999999988873
No 211
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.35 E-value=12 Score=39.73 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=48.6
Q ss_pred ceEEEEEEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHHHHHHh
Q psy8107 1328 EIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQIIRES 1398 (1613)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1398 (1613)
..+.|..-|.+.++++......| .+=+|+-+. +++.+|+|-.+|+|.|++.++.|++||.+-
T Consensus 57 p~Y~yK~~ikls~lglte~v~gd---~~kFeiw~~------~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 57 PSYSFKQSLKMTAVGITENVKGD---TKKFEIWYN------AREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred eeEEEeeeEEeecccccccCCCC---ccEEEEEeC------CCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 45788889999999998765433 555565442 235699999999999999999999999765
No 212
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=71.75 E-value=1e+02 Score=40.42 Aligned_cols=113 Identities=14% Similarity=0.178 Sum_probs=61.1
Q ss_pred HHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChhccceeee--cc-ccccccChhHHHHHHhhHHHhhcccc
Q psy8107 1015 IVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMY--TP-KVEKLLDPNVWLDAATQVFYSFGLAF 1091 (1613)
Q Consensus 1015 iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~lf--~P-d~s~L~~~~vW~~A~~QaFfSLslG~ 1091 (1613)
++......|++.++|+..+...+-+++++++++.++...+. +...+.. .+ +|... ....++.|+..+||++ +|+
T Consensus 171 l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~-~~~~~~~~~~~~~f~p~-g~~g~l~g~~~~~faf-~Gf 247 (557)
T TIGR00906 171 LLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADV-ANWSITEEKGAGGFMPY-GFTGVLSGAATCFFAF-IGF 247 (557)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCc-hhccccccccCCCCCCc-chHHHHHHHHHHHHHH-hhH
Confidence 34456778999999886655554444333333333321111 1111000 00 11111 2356788999999997 688
Q ss_pred cceehhccccCC-CCccccceehhhhhHHHHHHHHHHHHH
Q psy8107 1092 GSLIAFGSYNQP-NNNCVRDVIMVSICNALTAIYASVVVF 1130 (1613)
Q Consensus 1092 G~mitygSY~~~-~~ni~rda~~v~~~n~~vSllAgl~IF 1130 (1613)
....+++.-.+. +.|+.+..+...++.+++-++..+++.
T Consensus 248 d~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~ 287 (557)
T TIGR00906 248 DAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALT 287 (557)
T ss_pred HHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 887777766543 445666655555555555555444443
No 213
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=71.67 E-value=47 Score=42.38 Aligned_cols=116 Identities=15% Similarity=0.293 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhhcccccceeeeeeh----hhHHHHHHHHHHHHhccCCChhccceee---eccccccccChhHHHHHH
Q psy8107 1008 CLLLAWIIVFFIVMKGIQSSGRVVYFT----SMFPYIVLTIFFIRGITLPGAGAGLVHM---YTPKVEKLLDPNVWLDAA 1080 (1613)
Q Consensus 1008 ~l~l~w~iv~~~v~kGI~~~gKv~~~~----~l~P~vlL~iLlir~ltL~Ga~~Gl~~l---f~Pd~s~L~~~~vW~~A~ 1080 (1613)
.+++.|+ +.+.-.+|+|..+|+..++ .++|.++++++.+..+. .|......+- +.|++.. ......+
T Consensus 127 ~l~~~~~-~~~in~~gv~~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~-~g~~~~~~~~~~~~~p~~~~---~~~~~~~- 200 (474)
T TIGR03813 127 VLFVYWL-ATFIALRGVAAFTKVAKWGGIVGTIIPAAILVILGISYLL-TGGESQIPLRWDDAFPDFTN---FDNVVLA- 200 (474)
T ss_pred HHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCCHHHhCCCccc---cccHHHH-
Confidence 3333443 4455778999888875433 24555444443222111 1111111111 1233221 1122222
Q ss_pred hhHHHhhcccccceehhccccC-CCCccccceehhhhhHHHHHHHHHHHHH
Q psy8107 1081 TQVFYSFGLAFGSLIAFGSYNQ-PNNNCVRDVIMVSICNALTAIYASVVVF 1130 (1613)
Q Consensus 1081 ~QaFfSLslG~G~mitygSY~~-~~~ni~rda~~v~~~n~~vSllAgl~IF 1130 (1613)
..+||++ .|+-....++.=.+ .+.|+.|......++..++.++..+++.
T Consensus 201 ~~~~~af-~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~ 250 (474)
T TIGR03813 201 ASIFLFY-AGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIA 250 (474)
T ss_pred HHHHHHH-hchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456665 66666655554443 4556777666655555555555444433
No 214
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=71.63 E-value=1.3e+02 Score=38.27 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=19.5
Q ss_pred hHHHHHHhhHHHhhccccccee-hhccccCCCCccccc
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLI-AFGSYNQPNNNCVRD 1110 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mi-tygSY~~~~~ni~rd 1110 (1613)
-.|+.+++- ..+..++++..+ =|+-|.|++.+..+.
T Consensus 207 ~~f~~~~~~-~~g~~~s~~~~~~DysRy~~~~~~~~~~ 243 (442)
T TIGR00800 207 WAFLYALSL-VIGSFATWATNAPDFTRFGKSKKTAIWG 243 (442)
T ss_pred HHHHHHHHH-HHHHHHHHHcCchhhhhhcCCccchHHH
Confidence 334555444 334455555444 477788876555444
No 215
>PRK11387 S-methylmethionine transporter; Provisional
Probab=71.21 E-value=42 Score=42.85 Aligned_cols=41 Identities=7% Similarity=-0.083 Sum_probs=26.7
Q ss_pred hHHHHHHhhHHHhhcccccceehhccccCC-CCccccceehhh
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFGSYNQP-NNNCVRDVIMVS 1115 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mitygSY~~~-~~ni~rda~~v~ 1115 (1613)
..+..|+..++|++. |+.....++.=.+. +.|+.|..+...
T Consensus 206 ~~~~~~~~~~~faf~-G~e~~~~~a~E~knP~r~iPrAi~~~~ 247 (471)
T PRK11387 206 LPILMTMVAVNFAFS-GTELIGIAAGETENPAKVIPVAIRTTI 247 (471)
T ss_pred HHHHHHHHHHHHHHc-CHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 346777778888874 77777777766543 446666655433
No 216
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=70.86 E-value=54 Score=41.43 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhcc-CCChhccceeeeccccc--cccChhHHHHHHhhHH
Q psy8107 1008 CLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGIT-LPGAGAGLVHMYTPKVE--KLLDPNVWLDAATQVF 1084 (1613)
Q Consensus 1008 ~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~lt-L~Ga~~Gl~~lf~Pd~s--~L~~~~vW~~A~~QaF 1084 (1613)
++++.|+ .......|+|..+|+-.+...+-++.++++.+.++. ..+. .+.++|. .......|..|+..++
T Consensus 129 ~~~~~~~-~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (445)
T PRK10644 129 CVVVLWI-FVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGE------TYMAAWNVSGLGTFGAIQSTLNVTL 201 (445)
T ss_pred HHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------hccCCccccccchHHHHHHHHHHHH
Confidence 3334443 444566789988887655443333333323222221 1110 1122221 1112345677888889
Q ss_pred HhhcccccceehhccccCC-CCccccceehhhhhHHHHHHHHHHHHH
Q psy8107 1085 YSFGLAFGSLIAFGSYNQP-NNNCVRDVIMVSICNALTAIYASVVVF 1130 (1613)
Q Consensus 1085 fSLslG~G~mitygSY~~~-~~ni~rda~~v~~~n~~vSllAgl~IF 1130 (1613)
|++ .|+.....++.=.+. +.|+.|..+...++..++-++..+++.
T Consensus 202 ~af-~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 202 WSF-IGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHH-HhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 477777777776653 457777776666666555555544443
No 217
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=70.67 E-value=15 Score=36.84 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=43.3
Q ss_pred EEEEEEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHHHHH
Q psy8107 1330 IRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQIIR 1396 (1613)
Q Consensus 1330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1396 (1613)
++++--|+|..+||...+. .+-..-|.+. .+++.|.|+.+|+|.|+.-+++|..+|.
T Consensus 44 y~~~~~i~l~~~~v~~~~~--~~~~~~F~I~--------~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 44 FKVRARIDVSGMQVCEGDN--LERPHSFLVS--------GKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEEEEEecccEEEEeCCC--CCcCceEEEe--------cCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 6777779999999986642 2223334542 2348999999999999999999999885
No 218
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=70.33 E-value=96 Score=38.74 Aligned_cols=179 Identities=12% Similarity=0.204 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccccc---eeeeeehhhHHH--HHHHHHHHHhccCCChhccceeeeccccccccChhHHHH
Q psy8107 1004 WIVLCLLLAWIIVFFIVMKGIQSS---GRVVYFTSMFPY--IVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLD 1078 (1613)
Q Consensus 1004 ~l~l~l~l~w~iv~~~v~kGI~~~---gKv~~~~~l~P~--vlL~iLlir~ltL~Ga~~Gl~~lf~Pd~s~L~~~~vW~~ 1078 (1613)
.+.++-++...++++...++-|-. ||+ +-|. +.++++++.++..|... . -.|. ....+...+..
T Consensus 110 ~l~i~siiff~i~~~l~~~~~k~~~~iGk~-----LTP~lLi~l~~lii~g~~~p~g~--~---~~~~-~~~~~~~~f~~ 178 (378)
T TIGR00796 110 ALFIFSLIFFAVVLLLSLNPSKLIDRVGKF-----LTPALLVTLLALIIKALLWPAGP--I---LAAS-GAYASQQAFSK 178 (378)
T ss_pred HHHHHHHHHHHHHHHHHcCcccHHHHhHHH-----HHHHHHHHHHHHHHHHHHcCCCC--c---CCcc-cccccccHHHH
Confidence 344555556666777777886644 555 5564 45666677777665321 0 1111 11111256778
Q ss_pred HHhhHHHhhc----ccccceeh--hcc-ccCCCCccccceehhhhhHHHHHHHHHHHHHhhhccccccccccCCCceecc
Q psy8107 1079 AATQVFYSFG----LAFGSLIA--FGS-YNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIA 1151 (1613)
Q Consensus 1079 A~~QaFfSLs----lG~G~mit--ygS-Y~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~~~~i~~~~ 1151 (1613)
++-+.++++- +.+|.++. ... ..+.++...+.++..++ ++.+.-..++.-++|.+..... .... .
T Consensus 179 g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~----ia~i~l~~vY~~L~~lGa~~~~---~~~~-~ 250 (378)
T TIGR00796 179 GFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGL----IAAVLLAFIYLSLFYLGATSAA---AAGD-A 250 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcHh---hhcc-c
Confidence 8888888876 34444433 222 11112222232222222 2222222223222222211000 0000 0
Q ss_pred cCCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcc
Q psy8107 1152 AEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIE 1206 (1613)
Q Consensus 1152 ~~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~ 1206 (1613)
++|.. .-...++.-.|+.-..++=+..+++.+|++++++-..-..+.+.+
T Consensus 251 ~~~~~-----~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~ 300 (378)
T TIGR00796 251 VNGAQ-----ILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLV 300 (378)
T ss_pred CCcHH-----HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01111 111222233466666777777888899999999888777777753
No 219
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=69.74 E-value=7.2 Score=39.60 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=59.9
Q ss_pred CceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCC--CCCceEEEEcCCCCeEEeecCCHHHHHHH
Q psy8107 22 GWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHP--KRDYIFCLSTAFGDAYLFQAPCQVELENW 99 (1613)
Q Consensus 22 ~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~--KK~nVF~L~t~dg~~yLFQA~~~~em~~W 99 (1613)
.|.+.|+-|=.+.|-||..... ..+ +.|... -+.+...|+. |-.|...++..++..+.++++|.-++..|
T Consensus 19 ~WQ~Ry~~LfPNRLE~~~~~~~------~~~-eLi~M~-~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW 90 (116)
T cd01240 19 QWQTRYFKLYPNRLELYGESEA------NKP-ELITMD-QIEDVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQW 90 (116)
T ss_pred HHHHHHheeCcceeeecccccc------cCC-cEEEee-hhhhcchhheeeccCceEEEEEcCCceEEEecCCcHHHHHH
Confidence 5999999999999999744322 111 233333 3444455555 88999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8107 100 VNSIHSACA 108 (1613)
Q Consensus 100 i~~I~~aaa 108 (1613)
...|..|-.
T Consensus 91 ~~elr~a~r 99 (116)
T cd01240 91 KKELRDAHR 99 (116)
T ss_pred HHHHHHHHH
Confidence 999988743
No 220
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=69.60 E-value=4.5 Score=37.94 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=47.1
Q ss_pred hhhhhccChHHHHHhHHHHHHhh-hcCCcc-hhhhHHHHHHHHHhhhhhcccchhhhh
Q psy8107 129 FRLEKAIDSDNKLKHMADLQMSV-LAEPET-KQQINEQITQWEENLERLHCEQFRLRC 184 (1613)
Q Consensus 129 ~~~~~ki~~e~k~k~~~~~~~~~-~~~~~~-kk~~~~~i~~~~~k~e~l~~e~~Ry~~ 184 (1613)
..+.++|+.|.|++.-++-.... .+|.+. +.....++.+-+.|++||+.++.+|..
T Consensus 4 ~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 4 EELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999988887 566666 677788999999999999999999864
No 221
>PRK09664 tryptophan permease TnaB; Provisional
Probab=69.12 E-value=1.1e+02 Score=38.59 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=64.2
Q ss_pred HHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHH-hhhccccccccccCCCceecccCC
Q psy8107 1076 WLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVF-AILGFKAMSNAAEGTGLAFIAAEG 1154 (1613)
Q Consensus 1076 W~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IF-silG~~a~~~~~~~~~i~~~~~~G 1154 (1613)
+..|+-=.++|.|- .+++.++..|.+.+.+-.|.++++. +++.++.-+.+. +++|....+ ++.....+|
T Consensus 195 i~~alPVl~~SFgf-h~iIPsl~~y~~~d~~~~~kaIl~G---s~IpLviY~~W~~~ilG~lp~~------~~~~~~~~g 264 (415)
T PRK09664 195 IFMALPVCLASFGF-HGNIPSLIICYGKRKDKLIKSVVFG---SLLALVIYLFWLYCTMGNIPRE------SFKAIISSG 264 (415)
T ss_pred HHHHHHHHHHhhhC-CCcchHHHHHhCccHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCHH------HHHHHHHcC
Confidence 45567777888877 7888889999765555556665554 333333333332 444533211 011111222
Q ss_pred CceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcccccc
Q psy8107 1155 TGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKR 1210 (1613)
Q Consensus 1155 ~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~~~r 1210 (1613)
..+.= +-..+.....+...+.++=+.-++|=.||-++.--...+.+.|.+++++
T Consensus 265 ~nv~~--l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~ 318 (415)
T PRK09664 265 GNVDS--LVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDN 318 (415)
T ss_pred CCchH--HHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22111 1111222233444443333344456667777778888888888776554
No 222
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=68.90 E-value=1.1e+02 Score=38.61 Aligned_cols=87 Identities=10% Similarity=0.133 Sum_probs=50.7
Q ss_pred ccccccccccchhhhhHHhhhheeeeccCCCcccccccchhHhHHHHHhhhcchhhhHHHhhhhcc---CCChhhhhhhh
Q psy8107 840 WYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKM---RLGSLGVWNTI 916 (1613)
Q Consensus 840 ~yWk~cW~fItP~il~~I~i~~ii~~~~~~P~Y~~~g~~FLIpYli~l~liGlPll~lElalGQ~~---r~g~i~a~~~i 916 (1613)
..|+..++++-|.++.++....-- ..-++...|..|---.+..+++.-++.+.++...+|.+ +++-....++.
T Consensus 11 ~~~~~~l~~lGPg~lva~a~iDpg----~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~ 86 (416)
T COG1914 11 STLRKLLALLGPGFLVAVAYVDPG----NIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRER 86 (416)
T ss_pred HHHHHHHHhhCcHHHHHHhccCch----hHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 467888899999888766543110 00134455666666666677777777788887766654 44444444432
Q ss_pred hhcccccchhhHHHHH
Q psy8107 917 HPWLGGVGISSCLVTF 932 (1613)
Q Consensus 917 ~p~~~GvG~~~~li~~ 932 (1613)
..+++|+...+.+.
T Consensus 87 --y~~~~~~~~~~~~~ 100 (416)
T COG1914 87 --YLPGLGILLWILAE 100 (416)
T ss_pred --ccchHHHHHHHHHH
Confidence 33455554444443
No 223
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=68.43 E-value=10 Score=48.39 Aligned_cols=113 Identities=15% Similarity=0.315 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHh----ccCCChhcc--------ceeeeccccccc--cChhHH
Q psy8107 1011 LAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRG----ITLPGAGAG--------LVHMYTPKVEKL--LDPNVW 1076 (1613)
Q Consensus 1011 l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~----ltL~Ga~~G--------l~~lf~Pd~s~L--~~~~vW 1076 (1613)
+.++++......|++..+|+-+++..+=.+.++.+++.+ ..-++...+ ....+.|++..- .+...+
T Consensus 123 i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (478)
T PF00324_consen 123 IFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGF 202 (478)
T ss_pred hhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHH
Confidence 444555566677889988865544433333333333333 111222222 112233332111 124667
Q ss_pred HHHHhhHHHhhcccccceehhccccCC-CCccccceehhhhhHHHHHHH
Q psy8107 1077 LDAATQVFYSFGLAFGSLIAFGSYNQP-NNNCVRDVIMVSICNALTAIY 1124 (1613)
Q Consensus 1077 ~~A~~QaFfSLslG~G~mitygSY~~~-~~ni~rda~~v~~~n~~vSll 1124 (1613)
..|+..++|+.. |+.....+|.=.+. +.|+.|....+.+.-.++-++
T Consensus 203 ~~~~~~~~~af~-G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~ 250 (478)
T PF00324_consen 203 FAALVFAFFAFV-GFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVL 250 (478)
T ss_pred HHhhhhhhcccc-cccccccccccCCCchhhhhhHhhhhhhhhhhhhhh
Confidence 889999999995 88888777766553 446666666655444443333
No 224
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=67.55 E-value=4.3 Score=51.87 Aligned_cols=109 Identities=18% Similarity=0.154 Sum_probs=67.9
Q ss_pred hhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhccccccccccC-CCceecccCCCceehHHHHH
Q psy8107 1086 SFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEG-TGLAFIAAEGTGLAFIVFTQ 1164 (1613)
Q Consensus 1086 SLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~~-~~i~~~~~~G~gL~Fi~lP~ 1164 (1613)
+.+.-+|..++==|+- |+.--+.+.+.++..+.+++.|+++|-.+......+ .++....+.|+. .++-.
T Consensus 314 awaPfvG~FiArISkG-------RTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~---~a~~~ 383 (485)
T PF02028_consen 314 AWAPFVGLFIARISKG-------RTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPE---AALFA 383 (485)
T ss_dssp HTHHHHHHHHHHCTTT-------SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HH---HHHHH
T ss_pred HHHHHHHHHHhhhcCC-------cCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchh---hHHHH
Confidence 4444555555433332 334445666777777888888888876654321111 122111223332 34557
Q ss_pred HHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhh
Q psy8107 1165 AIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204 (1613)
Q Consensus 1165 af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D 1204 (1613)
++.++|.+.+..++|.+++++.=+||.=+..-++-+.-.+
T Consensus 384 ~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~ 423 (485)
T PF02028_consen 384 FLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSK 423 (485)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcC
Confidence 7899999999999999999999888888877776666555
No 225
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=65.80 E-value=6.5 Score=38.41 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=36.9
Q ss_pred eEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCcccee
Q psy8107 276 SVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFV 317 (1613)
Q Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~ 317 (1613)
-++|.++||..-++.|-..|||.||+...+.+.++++..+.-
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~ 45 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWT 45 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeE
Confidence 468999999999999999999999999998888877666553
No 226
>KOG3532|consensus
Probab=64.97 E-value=10 Score=48.61 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=38.3
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc
Q psy8107 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE 434 (1613)
Q Consensus 390 ~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~ 434 (1613)
+-|..|+|.++|.++.+++||.++.|||+||. +..++-++++.
T Consensus 400 v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s 442 (1051)
T KOG3532|consen 400 VKVCTVEDNSLADKAAFKPGDVLVAINNVPIR--SERQATRFLQS 442 (1051)
T ss_pred EEEEEecCCChhhHhcCCCcceEEEecCccch--hHHHHHHHHHh
Confidence 78999999999999999999999999999887 46778888763
No 227
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=64.89 E-value=11 Score=46.21 Aligned_cols=54 Identities=28% Similarity=0.300 Sum_probs=41.7
Q ss_pred EEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcCCe---EEEEEee
Q psy8107 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELS---LCMMMRS 444 (1613)
Q Consensus 391 ~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~~~---l~L~vr~ 444 (1613)
.+..+.++++|..+|+++||+|+++|+..+.+.+.-........... +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence 45589999999999999999999999999887765544444433333 7777766
No 228
>PRK09928 choline transport protein BetT; Provisional
Probab=62.71 E-value=36 Score=45.17 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=42.5
Q ss_pred ChhccceeeeccccccccChhHHHHHHhhHHHhhcc-c------ccceehhccccCCCCccccceehh
Q psy8107 1054 GAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGL-A------FGSLIAFGSYNQPNNNCVRDVIMV 1114 (1613)
Q Consensus 1054 Ga~~Gl~~lf~Pd~s~L~~~~vW~~A~~QaFfSLsl-G------~G~mitygSY~~~~~ni~rda~~v 1114 (1613)
|..|=+.||.+|-...=.+.+.-..|+.+.||..|+ + .|..++|.+|+++..-..|+++.-
T Consensus 115 gvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~~pl~issal~p 182 (679)
T PRK09928 115 SVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYP 182 (679)
T ss_pred hHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCCCCchhHhhhh
Confidence 344446666666544333567888999999999997 3 466688999998887666665543
No 229
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=62.65 E-value=1.2e+02 Score=38.62 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=22.0
Q ss_pred chhHhHHHH-HhhhcchhhhHHHhhhhccCCChhhhh
Q psy8107 878 AFLIPFMVM-LILEGIPLFLIELGIGQKMRLGSLGVW 913 (1613)
Q Consensus 878 ~FLIpYli~-l~liGlPll~lElalGQ~~r~g~i~a~ 913 (1613)
+.++.|+++ ++.+.+++.+.|++---=...|....|
T Consensus 37 ~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~ 73 (478)
T TIGR00913 37 GLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATY 73 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 456677654 566777778888876333244445445
No 230
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=62.05 E-value=1.2e+02 Score=38.17 Aligned_cols=120 Identities=23% Similarity=0.229 Sum_probs=57.5
Q ss_pred HHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHH-HHHHHhhhccccccccccCCCceecccCC
Q psy8107 1076 WLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYA-SVVVFAILGFKAMSNAAEGTGLAFIAAEG 1154 (1613)
Q Consensus 1076 W~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllA-gl~IFsilG~~a~~~~~~~~~i~~~~~~G 1154 (1613)
+..++-=.++|+|- .+++-++..|.+.+.+-.|-+++++ +++.++. -+-+++++|....+ +.....+++
T Consensus 183 ~~~~iPvl~~SFgf-h~iIpsl~~y~~~~~~~~~k~i~~G---s~i~li~yl~W~~~~lg~l~~~------~~~~~~~~~ 252 (403)
T PRK15132 183 ALSAIPVIFTSFGF-HGSVPSIVSYMGGNIRKLRWVFIIG---SAIPLVAYIFWQLATLGSIDST------TFMGLLANH 252 (403)
T ss_pred HHHHHHHHHHHhhC-CcccHHHHHHhCcCHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCHH------HHHHHHHcc
Confidence 44555555665543 3456677777755544455444443 3332222 22234555544321 011111112
Q ss_pred CceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhccc
Q psy8107 1155 TGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEI 1207 (1613)
Q Consensus 1155 ~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~ 1207 (1613)
.+ .-.+-..+++...+...+.+.-+.-++|=.||-++........+.|.++
T Consensus 253 ~~--~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~ 303 (403)
T PRK15132 253 AG--LNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQ 303 (403)
T ss_pred Cc--hHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 1112234444334444444433444456667777777888888888654
No 231
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=59.78 E-value=14 Score=35.96 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=34.4
Q ss_pred EEEEc---CCCCeEEEEecCCCcHHHHHHhHccccccCC--ccceeeee
Q psy8107 277 VKVSL---PENQYAHVYLKDSMTVEEFLANACSRKNLNP--MEHFVRVK 320 (1613)
Q Consensus 277 ~~v~~---~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~--~~~~~~~~ 320 (1613)
++|.. |+++..++.|.+++|+.||+..+.++.+++. .+++|-..
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~ 53 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEV 53 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEE
Confidence 45554 4599999999999999999999999999975 34444433
No 232
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=59.37 E-value=4.4e+02 Score=33.72 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=31.9
Q ss_pred hhHHHHHHhhHHHhhcccccceeh-hccccCCCCccccceehhhhhHHHHHH
Q psy8107 1073 PNVWLDAATQVFYSFGLAFGSLIA-FGSYNQPNNNCVRDVIMVSICNALTAI 1123 (1613)
Q Consensus 1073 ~~vW~~A~~QaFfSLslG~G~mit-ygSY~~~~~ni~rda~~v~~~n~~vSl 1123 (1613)
+-.|..|+.-++=+ =+++|.+.+ |+-|.|.+.+ +++++.+++..+.+.
T Consensus 192 ~~~fl~a~slv~g~-~~sw~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~ 240 (442)
T COG1457 192 PLSFLSALSLVIGS-FASWGPYAADYSRYAPSPTP--SKAFLAAVLGFFLGT 240 (442)
T ss_pred chhHHHHHHHHHHH-HHhhhhhhhhhhhhcCCCch--HHHHHHHHHHHHHHH
Confidence 44566666665533 456666643 7888888887 788887777766554
No 233
>PF12812 PDZ_1: PDZ-like domain
Probab=58.91 E-value=9.1 Score=36.89 Aligned_cols=42 Identities=31% Similarity=0.424 Sum_probs=33.3
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc
Q psy8107 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE 434 (1613)
Q Consensus 390 ~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~ 434 (1613)
+|| .+..|++|.+.|+.+|--|..|||+++.+ +++..+++++
T Consensus 33 v~v-~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ 74 (78)
T PF12812_consen 33 VYV-AVSGGSLAFAGGISKGFIITSVNGKPTPD--LDDFIKVVKK 74 (78)
T ss_pred EEE-EecCCChhhhCCCCCCeEEEeECCcCCcC--HHHHHHHHHh
Confidence 445 55888899888899999999999988765 5677777763
No 234
>PRK11017 codB cytosine permease; Provisional
Probab=58.52 E-value=3.3e+02 Score=34.22 Aligned_cols=38 Identities=11% Similarity=-0.079 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhcccccccchhhh
Q psy8107 1179 FFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPIL 1216 (1613)
Q Consensus 1179 FFl~L~lagltS~isllE~iVt~l~D~~~~~r~~~~~~ 1216 (1613)
+++++++..+++....+-.....+.+..+++|++..++
T Consensus 260 ~l~~~~l~~~t~n~~~~ys~~l~~~~l~~~~~~~~~ii 297 (404)
T PRK11017 260 AIVMLGLNIWTTNDNALYASGLGFCNITRLSSRTLTVV 297 (404)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 44555555555555555444455666555555544433
No 235
>KOG1264|consensus
Probab=58.42 E-value=22 Score=46.81 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=43.5
Q ss_pred CceeEeCceEEeeCC-CCCCCCceEEEEcC--CCCeEEeecCCHHHHHHHHHHHHHHHHh
Q psy8107 53 KHLIIVDGAIMQPIP-EHPKRDYIFCLSTA--FGDAYLFQAPCQVELENWVNSIHSACAA 109 (1613)
Q Consensus 53 ~~~I~l~~~~~~~a~-dy~KK~nVF~L~t~--dg~~yLFQA~~~~em~~Wi~~I~~aaa~ 109 (1613)
++..++.-+.+.+++ ....|-.||.|.-. .-..|+|.|++++|+..|+++|..++-.
T Consensus 853 rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~ 912 (1267)
T KOG1264|consen 853 RGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWK 912 (1267)
T ss_pred hccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHH
Confidence 345566666555664 55678899998644 3667999999999999999999988653
No 236
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=57.56 E-value=1.8e+02 Score=36.30 Aligned_cols=39 Identities=8% Similarity=-0.038 Sum_probs=16.1
Q ss_pred HHHHHHhhhhcchhhhhhhhhhhhcc-cccccchhhhhHh
Q psy8107 1181 MMLLSLGLGSQIGILEGVLCTIFDIE-IFKRIRKPILTEA 1219 (1613)
Q Consensus 1181 l~L~lagltS~isllE~iVt~l~D~~-~~~r~~~~~~~~~ 1219 (1613)
+++++..+++....+-+.-..+...+ +++|+++.+++++
T Consensus 251 ~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~~~~~~~i~~i 290 (386)
T TIGR02358 251 LIILLSTVTTTFMDIYSAAISTGNLLPRLKVKHLAIGVGV 290 (386)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 34444555554444433333333322 3444444444333
No 237
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=57.02 E-value=35 Score=32.63 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=59.0
Q ss_pred cceeeehhhhhhhheeeeccccccccccCccCCCCCCccceEEEEEEeecceEEEecCCcCC----CCcceEEEEEeecc
Q psy8107 1289 ELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVLVPVTEVQVRASSAKD----MDSHFLWELIHLRS 1364 (1613)
Q Consensus 1289 ~~w~~~w~fitPvill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 1364 (1613)
.-|+-.|.++..-.++|.-.-.. .+...+...|++....|+.....+ .+.....++.|...
T Consensus 15 ~~wk~r~~vL~~~~L~~~~~~~~---------------~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~ 79 (104)
T PF00169_consen 15 KKWKKRYFVLRDSYLLYYKSSKD---------------KSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNG 79 (104)
T ss_dssp SSEEEEEEEEETTEEEEESSTTT---------------TTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTS
T ss_pred CCeEEEEEEEECCEEEEEecCcc---------------ccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCC
Confidence 35555666666644444332221 223345566999999998877763 66677777777433
Q ss_pred cccCCccceEEeecCChHHHHHHHHHHHHHH
Q psy8107 1365 QIQRRTEKVYVLSNSTAEFRNAFLKTIRQII 1395 (1613)
Q Consensus 1365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1395 (1613)
+.|.|++.+.|.+++.+++|+..+
T Consensus 80 -------~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 -------KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp -------EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -------cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999875
No 238
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=56.77 E-value=90 Score=40.35 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=31.2
Q ss_pred HHHHHHHh-CCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhh
Q psy8107 1161 VFTQAIVE-LPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204 (1613)
Q Consensus 1161 ~lP~af~~-mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D 1204 (1613)
++|....+ +| .....+|...++-+.++|.-+.+...-+.+..
T Consensus 313 ~~~~l~~~~lp--~~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~ 355 (502)
T PRK15419 313 VFIELAQILFN--PWIAGILLSAILAAVMSTLSCQLLVCSSAITE 355 (502)
T ss_pred HHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 44 56788899999999999999998888777644
No 239
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=56.49 E-value=23 Score=48.05 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=30.3
Q ss_pred cccccccchhhhhHHhhhheeeeccCCCcccccccchhHhHHHHHhhhcchhhhHHHhhhhcc
Q psy8107 843 QITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKM 905 (1613)
Q Consensus 843 k~cW~fItP~il~~I~i~~ii~~~~~~P~Y~~~g~~FLIpYli~l~liGlPll~lElalGQ~~ 905 (1613)
+..|.+..|+.+.+-+ ... ....+.|-.-|++.|+++++.|++--+++-..+-+.+
T Consensus 905 ~~~wvl~~Pi~~~l~~------TIP-Dcrk~~~~k~y~ltFi~SIiwIsi~SyilV~~at~IG 960 (1096)
T TIGR00927 905 QAIYLFLLPIVFPLWL------TVP-DVRRQEARKFFVITFLGSIMWIAMFSYLMVWWAHQVG 960 (1096)
T ss_pred eeEeEEecchhheeee------ecC-CCCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666676543211 111 1133344445677777777777776666666555544
No 240
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=55.93 E-value=25 Score=33.99 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=34.7
Q ss_pred EEEEcCC---CCeEEEEecCCCcHHHHHHhHccccccC-Ccccee
Q psy8107 277 VKVSLPE---NQYAHVYLKDSMTVEEFLANACSRKNLN-PMEHFV 317 (1613)
Q Consensus 277 ~~v~~~~---~~~~~~~~~~~~~~~~~l~~~c~~~~l~-~~~~~~ 317 (1613)
++|..+| ++..++.|..++|+.||+..+.++.+++ ...+|.
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~ 46 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYA 46 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEE
Confidence 4677777 9999999999999999999999999997 444553
No 241
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=54.72 E-value=32 Score=32.19 Aligned_cols=59 Identities=17% Similarity=0.346 Sum_probs=45.8
Q ss_pred EEEEEEeecceEEEecCCcCC-CCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHHHH
Q psy8107 1330 IRYQVLVPVTEVQVRASSAKD-MDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQII 1395 (1613)
Q Consensus 1330 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1395 (1613)
......||+.+++|+.....+ ...++.++|.+-. .+.|.+++.+++.++..+.+|++.+
T Consensus 42 ~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~-------~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 42 YKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTAD-------RRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CCCceEEECCcCEEEeCCCCccCCCceEEEEEecC-------CceEEEEcCCHHHHHHHHHHHHHhh
Confidence 455667999999888776543 3456777777633 2799999999999999999999875
No 242
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=53.55 E-value=3e+02 Score=34.78 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=43.8
Q ss_pred ChhHHHHHHhhHHHhhcccccceehhccccCCCCc--cccceehhhhhHHHHHHHHHHHHHhhhccc
Q psy8107 1072 DPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNN--CVRDVIMVSICNALTAIYASVVVFAILGFK 1136 (1613)
Q Consensus 1072 ~~~vW~~A~~QaFfSLslG~G~mitygSY~~~~~n--i~rda~~v~~~n~~vSllAgl~IFsilG~~ 1136 (1613)
+...|..++.-.+||.+ +.+.+..+..|.+++.. +.+...+..+...+.-++-++.+|+.+|-.
T Consensus 191 ~~~~~~~~ipv~vfsF~-~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~ 256 (415)
T COG0814 191 FWKYLLLAIPVFVFSFG-FHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSL 256 (415)
T ss_pred hHHHHHHHhhHHHhhhh-CCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45677889999999986 46788888888876665 444444444555555566667777766654
No 243
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.39 E-value=58 Score=33.53 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=47.6
Q ss_pred ceEEEEEEeecceEEEecCCcCCCC-----cceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHH
Q psy8107 1328 EIIRYQVLVPVTEVQVRASSAKDMD-----SHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIR 1392 (1613)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1392 (1613)
+-++|+--|.+..++|.--...+.+ -.--|+|+|. ..++.|++|+-|+|.|+.++.++.
T Consensus 41 ~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~------~~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 41 DHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSE------STDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred CcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEc------CCCeEEEEEECCHHHHHHHHHHHH
Confidence 4789999999999999876554434 2456888885 458999999999999999998874
No 244
>PRK10580 proY putative proline-specific permease; Provisional
Probab=53.16 E-value=3.1e+02 Score=34.87 Aligned_cols=38 Identities=5% Similarity=-0.001 Sum_probs=24.0
Q ss_pred hHHHHHHhhHHHhhcccccceehhccccCC-CCcccccee
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFGSYNQP-NNNCVRDVI 1112 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mitygSY~~~-~~ni~rda~ 1112 (1613)
..+..|+..++|++ .|+.....++.-.+. +.|+.|..+
T Consensus 199 ~~~~~~~~~~~fsf-~G~e~~~~~a~E~knP~k~iPrAi~ 237 (457)
T PRK10580 199 LGMVMSLQMVMFAY-GGIEIIGITAGEAKDPEKSIPRAIN 237 (457)
T ss_pred HHHHHHHHHHHHHH-hCHHHHHHHHHHhcChhhHHHHHHH
Confidence 45777888888887 466666666655432 334555543
No 245
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=53.02 E-value=3.7e+02 Score=34.07 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=28.0
Q ss_pred hHHHHHHhhHHHhhcccccceehhccccCC-CCcccccee
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFGSYNQP-NNNCVRDVI 1112 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mitygSY~~~-~~ni~rda~ 1112 (1613)
..|..|+..++|++. |+-....++.-.+. +.|+.|...
T Consensus 201 ~~~~~a~~~~~~af~-G~e~~~~~a~E~k~P~r~iPrAi~ 239 (452)
T TIGR01773 201 GAVLLAILVTMFSFM-GTEIVTIAAAESSNPIKSITRATN 239 (452)
T ss_pred HHHHHHHHHHHHHhc-cHHHHhHHHHhhcChhhHHHHHHH
Confidence 468899999999984 88888777776654 346777653
No 246
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=52.70 E-value=4.7e+02 Score=33.44 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccCCChhccceeeecccccccc-C-hhHHHHHHhhHHHhhc
Q psy8107 1011 LAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLL-D-PNVWLDAATQVFYSFG 1088 (1613)
Q Consensus 1011 l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~lf~Pd~s~L~-~-~~vW~~A~~QaFfSLs 1088 (1613)
+..+++..+-..|+|..+++..+...+=.+.++++++..+.... .+-.+.|...++... . ...|..++..++|++
T Consensus 150 ~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f- 226 (475)
T TIGR03428 150 VLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQ--RGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVM- 226 (475)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceeeecCCCCCCccHHHHHHHHHHHHHHHh-
Confidence 34445666677888888776433222211111111111111111 122233332221110 1 235666777777776
Q ss_pred ccccceehhccccC-CCCccccceehhhhhHHH
Q psy8107 1089 LAFGSLIAFGSYNQ-PNNNCVRDVIMVSICNAL 1120 (1613)
Q Consensus 1089 lG~G~mitygSY~~-~~~ni~rda~~v~~~n~~ 1120 (1613)
.|+.....++.=.+ .+.|+.|..+...++..+
T Consensus 227 ~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~ 259 (475)
T TIGR03428 227 VGFGSAGELSEETKNPRRVAPRTILTALSVSAL 259 (475)
T ss_pred cCcchHHHHHHHhcCcchhhhHHHHHHHHHHHH
Confidence 57777766665554 455666665555444433
No 247
>KOG4424|consensus
Probab=52.28 E-value=27 Score=44.64 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=58.8
Q ss_pred eEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHHHHH
Q psy8107 24 KGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSI 103 (1613)
Q Consensus 24 k~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I 103 (1613)
...|++|=.+.+.+.+... ............+++.|+... ..|+...+|.|.|+-.+ +.--|||.++++-..||++|
T Consensus 289 qeRylfLFNd~~lyc~~r~-~~~~~k~~~r~~~s~~~~~v~-~~~~~~~~~tF~~~G~~-r~vel~a~t~~ek~eWv~~I 365 (623)
T KOG4424|consen 289 QERYLFLFNDILLYCKPRK-RLPGSKYEVRARCSISHMQVQ-EDDNEELPHTFILTGKK-RGVELQARTEQEKKEWVQAI 365 (623)
T ss_pred ceeEEEEehhHHHhhhhhh-hcccceeccceeeccCcchhc-ccccccCCceEEEeccc-ceEEeecCchhhHHHHHHHH
Confidence 4456777766555555443 233444555566777776543 34677889999999855 44679999999999999999
Q ss_pred HHHHHh
Q psy8107 104 HSACAA 109 (1613)
Q Consensus 104 ~~aaa~ 109 (1613)
+.|+-.
T Consensus 366 ~~~Id~ 371 (623)
T KOG4424|consen 366 QDAIDK 371 (623)
T ss_pred HHHHHH
Confidence 999874
No 248
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=52.20 E-value=42 Score=35.74 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=43.7
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeC-----------------
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI----------------- 66 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a----------------- 66 (1613)
.||-|.||... ...|-...+.|=.+.|.+-|........+...-+.+|.+.--..+..
T Consensus 3 ~~G~L~Rk~~~-----~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~~r~s~s~ 77 (135)
T PF15405_consen 3 YKGDLKRKGDN-----SFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPPPQRSIAKRPSSSL 77 (135)
T ss_dssp -------------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTTS---------S--
T ss_pred ccccccccccc-----ccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCCcccCcccccccCc
Confidence 56777776553 23487888888888888877643322211111112222221111110
Q ss_pred ---------------CCCCCCCceEEEEcCC--CCeEEeecCCHHHHHHHHHHHHHH
Q psy8107 67 ---------------PEHPKRDYIFCLSTAF--GDAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 67 ---------------~dy~KK~nVF~L~t~d--g~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
.+..|..+-|+++... |..|-|.|++..+.+.|+++|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 78 ISSSSSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp -----SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCCccCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 1122444455555443 556899999999999999999864
No 249
>PRK09928 choline transport protein BetT; Provisional
Probab=52.19 E-value=9.5 Score=50.33 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccC-CCceecccCCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcch
Q psy8107 1115 SICNALTAIYASVVVFAILGFKAMSNAAEG-TGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIG 1193 (1613)
Q Consensus 1115 ~~~n~~vSllAgl~IFsilG~~a~~~~~~~-~~i~~~~~~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~is 1193 (1613)
++...++-.+.+++.|+++|-.+......+ .++.....++ .-.++-+++.++|++.+..+++.+++++.=+||+=|
T Consensus 353 ilgvllvPsl~~~~WfsIfGgsal~l~~~g~~~l~~~~~~~---~~~alf~~l~~lP~~~i~~~l~~il~~iFfvTSaDS 429 (679)
T PRK09928 353 VLGTLIIPFTFTLLWLSIFGNSALYEIIHGNAAFAEEAMAH---PERGFYSLLAQYPAFTFSASVATITGLLFYVTSADS 429 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCccHHHHhhcc---hhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcchH
Confidence 344445556666777777775554311111 1221112223 234667889999999999999999988888887776
Q ss_pred hhhhhhhh
Q psy8107 1194 ILEGVLCT 1201 (1613)
Q Consensus 1194 llE~iVt~ 1201 (1613)
..-++-+.
T Consensus 430 ~s~Vla~l 437 (679)
T PRK09928 430 GALVLGNF 437 (679)
T ss_pred HHHHHHHH
Confidence 65555443
No 250
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=52.00 E-value=2.5e+02 Score=35.70 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=29.1
Q ss_pred hHHHHHHhhHHHhhcccccceehhccccC-CCCccccceehhhh
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFGSYNQ-PNNNCVRDVIMVSI 1116 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mitygSY~~-~~~ni~rda~~v~~ 1116 (1613)
..+..|+..++|++. |+-....++.-.+ .+.|+.|....+..
T Consensus 181 ~~~~~a~~~~~faf~-G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 181 GAVLSAMLITMFSFM-GAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHHHHHh-CHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 567889999999986 7777777776664 34567676544433
No 251
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=51.53 E-value=15 Score=46.64 Aligned_cols=83 Identities=14% Similarity=0.073 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccC-CCce-ecccCCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcch
Q psy8107 1116 ICNALTAIYASVVVFAILGFKAMSNAAEG-TGLA-FIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIG 1193 (1613)
Q Consensus 1116 ~~n~~vSllAgl~IFsilG~~a~~~~~~~-~~i~-~~~~~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~is 1193 (1613)
+...++-.+.+++.|+++|-.+......+ .+.. .+.+++. -.++-+++.++|.+.+..+++.+++++.=+||+=+
T Consensus 300 lg~~~~psl~~~~wf~ifGg~ai~~~~~g~~~~~~~~~~~~~---~~a~~~~l~~lP~~~i~~~l~~il~~if~vTs~DS 376 (453)
T TIGR00842 300 FGVLLGPTAFTYLWFSVFGNSALYLQQNGGFINAPFVVETNG---ARALFGLLQALPLGTITSALALIVIIIFFITSADS 376 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhhHHHhcccc---hhHHHHHHHHCcHHHHHHHHHHHHHHHHHHhcchH
Confidence 44444555566666777765554321111 1101 1112221 45667889999999999999999988888888777
Q ss_pred hhhhhhhh
Q psy8107 1194 ILEGVLCT 1201 (1613)
Q Consensus 1194 llE~iVt~ 1201 (1613)
..-++-+.
T Consensus 377 ~s~vla~~ 384 (453)
T TIGR00842 377 GALVLANT 384 (453)
T ss_pred HHHHHHHH
Confidence 76555544
No 252
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=51.32 E-value=81 Score=40.55 Aligned_cols=52 Identities=15% Similarity=0.299 Sum_probs=32.7
Q ss_pred hhHHHHHHhhHHHhhcccccceehhccccC-CCCccccceehhhhhHHHHHHHH
Q psy8107 1073 PNVWLDAATQVFYSFGLAFGSLIAFGSYNQ-PNNNCVRDVIMVSICNALTAIYA 1125 (1613)
Q Consensus 1073 ~~vW~~A~~QaFfSLslG~G~mitygSY~~-~~~ni~rda~~v~~~n~~vSllA 1125 (1613)
+..+..++..++|++. |+-....++.=.+ .+.|+.|......+.-.+.-+++
T Consensus 210 ~~~~~~~~~~~~~~f~-G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~ 262 (496)
T PRK15238 210 PIAVLSFVVFAIFAYG-GIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLA 262 (496)
T ss_pred chHHHHHHHHHHHHHH-hHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHH
Confidence 3457778888888885 7777777666554 35577776665555444333333
No 253
>PRK10746 putative transport protein YifK; Provisional
Probab=48.46 E-value=2.2e+02 Score=36.28 Aligned_cols=40 Identities=15% Similarity=-0.011 Sum_probs=27.4
Q ss_pred hhHHHHHHhhHHHhhcccccceehhccccC-CCCccccceeh
Q psy8107 1073 PNVWLDAATQVFYSFGLAFGSLIAFGSYNQ-PNNNCVRDVIM 1113 (1613)
Q Consensus 1073 ~~vW~~A~~QaFfSLslG~G~mitygSY~~-~~~ni~rda~~ 1113 (1613)
...+..|+..++|++ .|+-.....+.=.+ .+.|+.|....
T Consensus 199 ~~g~~~~~~~~~faf-~G~e~v~~~a~E~knP~k~iP~Ai~~ 239 (461)
T PRK10746 199 WKGFLTALCIVVASY-QGVELIGITAGEAKNPQVTLRSAVGK 239 (461)
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHhcChhhHHHHHHHH
Confidence 467789999999998 67777766665543 34456665443
No 254
>PRK11021 putative transporter; Provisional
Probab=47.35 E-value=4.6e+02 Score=32.69 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=36.9
Q ss_pred ChhHHHHHHhhHHHhhcccccceehhccccCC-CCccccceehhhhhHHHHHHHHH
Q psy8107 1072 DPNVWLDAATQVFYSFGLAFGSLIAFGSYNQP-NNNCVRDVIMVSICNALTAIYAS 1126 (1613)
Q Consensus 1072 ~~~vW~~A~~QaFfSLslG~G~mitygSY~~~-~~ni~rda~~v~~~n~~vSllAg 1126 (1613)
+...+..|+..+||++ .|+.....++.=.+. +.|+.|..++..++..++-++..
T Consensus 175 ~~~~~~~~~~~~~~af-~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~ 229 (410)
T PRK11021 175 EWSGLFAALGVMFWCF-VGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACT 229 (410)
T ss_pred cHHHHHHHHHHHHHHH-hcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHH
Confidence 3456788899999998 488888888777654 56777776665554444444433
No 255
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=47.33 E-value=6.3 Score=45.87 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=0.0
Q ss_pred eeehhhhhhhheeeec
Q psy8107 1292 AMCFVFKSAVVFLCKE 1307 (1613)
Q Consensus 1292 ~~~w~fitPvill~~~ 1307 (1613)
.||..|+.++++++.-
T Consensus 141 aFcLAF~LaivlLIIA 156 (381)
T PF05297_consen 141 AFCLAFLLAIVLLIIA 156 (381)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888887776544
No 256
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=47.09 E-value=62 Score=32.48 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=47.3
Q ss_pred EEEEeCCeEEEecCCCc-CCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHHHHHHH
Q psy8107 27 WVCLKGTTLLFYPCDSR-EGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHS 105 (1613)
Q Consensus 27 ~~vLkG~~L~fyKd~~~-~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~~ 105 (1613)
.+-|=++.|..-+-... .+......-.-.|+|++-..+.. .|+..+..|..|.|-|++..|-.+|+.+|+.
T Consensus 21 ~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~--------~~~~~~~~~KSf~~~asS~~Er~eW~~hI~~ 92 (96)
T cd01228 21 HLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE--------PFRIHNKNGKSYTFLLSSDYERSEWRESIQK 92 (96)
T ss_pred EEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch--------hhhccccCCceEEEEecCHHHHHHHHHHHHH
Confidence 45666676665443221 11123334445777776544443 2777777799999999999999999999985
No 257
>KOG2921|consensus
Probab=45.76 E-value=17 Score=44.35 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=34.1
Q ss_pred eeEEEEecCCChh--hhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhc
Q psy8107 389 CCYVSRVEDKSVA--MHNGLIKGDEIMVINGAIVSDLDMMYLESVLQE 434 (1613)
Q Consensus 389 ~~~Vs~V~~gg~A--~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~ 434 (1613)
++-|.+|...||+ .| ||.+||.|-.|||.+|.. .+|-...++.
T Consensus 221 gV~Vtev~~~Spl~gpr-GL~vgdvitsldgcpV~~--v~dW~ecl~t 265 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPR-GLSVGDVITSLDGCPVHK--VSDWLECLAT 265 (484)
T ss_pred eEEEEeccccCCCcCcc-cCCccceEEecCCcccCC--HHHHHHHHHh
Confidence 4677778888888 55 999999999999999875 5666666653
No 258
>KOG3834|consensus
Probab=45.52 E-value=31 Score=42.80 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=45.5
Q ss_pred ceeEEEEecCCChhhhcCCCC-CCEEEEEcCeecCCCCHHHHHHHHhcC-CeEEEEEeecC
Q psy8107 388 LCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDLDMMYLESVLQEE-LSLCMMMRSSR 446 (1613)
Q Consensus 388 ~~~~Vs~V~~gg~A~~~GL~~-GDeIl~vNg~~v~~l~~~~~~~ll~~~-~~l~L~vr~~~ 446 (1613)
.+++|-+|.++++|.++||-+ =|-|..|||.-.+.- -+.++.+++.. .++.|+|....
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~n~k 74 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVYNSK 74 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEEecc
Confidence 458999999999999999999 799999999876643 45566666433 56888887554
No 259
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=45.30 E-value=7 Score=45.48 Aligned_cols=14 Identities=36% Similarity=0.894 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHH
Q psy8107 1172 APFWSIIFFMMLLS 1185 (1613)
Q Consensus 1172 g~l~avLFFl~L~l 1185 (1613)
..+|.+|-|.+.|+
T Consensus 134 As~WtiLaFcLAF~ 147 (381)
T PF05297_consen 134 ASFWTILAFCLAFL 147 (381)
T ss_dssp --------------
T ss_pred hHHHHHHHHHHHHH
Confidence 34555554443333
No 260
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=45.06 E-value=1.4e+02 Score=37.92 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=36.7
Q ss_pred CChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcccccccchhhh
Q psy8107 1170 PGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPIL 1216 (1613)
Q Consensus 1170 p~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~~~~r~~~~~~ 1216 (1613)
-.|+...+++-++.++|-+|++++++-..-..+.+.+. +-..+.++
T Consensus 270 ~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-kisY~~~v 315 (427)
T PF05525_consen 270 LFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-KISYKVWV 315 (427)
T ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChHHHH
Confidence 35778888889999999999999999999999999776 33444443
No 261
>KOG0248|consensus
Probab=44.64 E-value=19 Score=46.43 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=54.5
Q ss_pred CCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeC-ceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHH
Q psy8107 20 KRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVD-GAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELEN 98 (1613)
Q Consensus 20 ~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~-~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~ 98 (1613)
.+.||+.|+|+|.....||+.+.. ....|...+++. ++....+. -...|+|-+.. ..|.|-+.+.--..+
T Consensus 262 ~k~lkrr~~v~k~gqi~~y~~~~~----~~~~p~s~~d~~s~~~~~~~~----~s~~fqli~~t-~~~~~~~~s~~lt~d 332 (936)
T KOG0248|consen 262 IKSLKRRYVVFKNGQISFYRKHNN----RDEEPASKIDIRSVTKLEQQG----AAYAFQLITST-DKMNFMTESERTTHD 332 (936)
T ss_pred HHHHHhHheeeccceEEEEEcCCC----ccccccCcccccccceeeccc----hhHHhhhhhhc-eeEEEeccChhhhhh
Confidence 356999999999988889887643 233444455554 22222221 13456655443 468888999999999
Q ss_pred HHHHHHHHHHh
Q psy8107 99 WVNSIHSACAA 109 (1613)
Q Consensus 99 Wi~~I~~aaa~ 109 (1613)
|++-+..++..
T Consensus 333 w~~iL~~~iKv 343 (936)
T KOG0248|consen 333 WVTILSAAIKA 343 (936)
T ss_pred hHHHHHHHHHH
Confidence 99999988775
No 262
>PF15411 PH_10: Pleckstrin homology domain
Probab=44.21 E-value=89 Score=32.51 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=55.5
Q ss_pred CCceEEEEEEeCCeEEEecCCCcCCCCC-------------CCCCCceeEeCceEEeeCCCCCCCCceEEEEc---CCCC
Q psy8107 21 RGWKGYWVCLKGTTLLFYPCDSREGRSV-------------DAAPKHLIIVDGAIMQPIPEHPKRDYIFCLST---AFGD 84 (1613)
Q Consensus 21 R~Wk~~~~vLkG~~L~fyKd~~~~~~~~-------------~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t---~dg~ 84 (1613)
..|+.|+|-|=...|.+.|+........ ....++.|-+.|-....+.+ .--.++..+.- ++-.
T Consensus 19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s-~~g~~~L~i~w~~d~e~~ 97 (116)
T PF15411_consen 19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSS-KPGSYSLQISWKGDPELE 97 (116)
T ss_pred CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccC-CCCceEEEEEEcCCCCCc
Confidence 4599999999999999999887654411 11233445555333333222 22346777765 4567
Q ss_pred eEEeecCCHHHHHHHHHHH
Q psy8107 85 AYLFQAPCQVELENWVNSI 103 (1613)
Q Consensus 85 ~yLFQA~~~~em~~Wi~~I 103 (1613)
.|.+.-.|+++|+.|-++|
T Consensus 98 ~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 98 NFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred eEEEEeCCHHHHHHHHhhC
Confidence 8999999999999998765
No 263
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=44.13 E-value=3.1e+02 Score=34.53 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=27.9
Q ss_pred hHHHHHHhhHHHhhcccccceehhccccCC-CCccccceehhhh
Q psy8107 1074 NVWLDAATQVFYSFGLAFGSLIAFGSYNQP-NNNCVRDVIMVSI 1116 (1613)
Q Consensus 1074 ~vW~~A~~QaFfSLslG~G~mitygSY~~~-~~ni~rda~~v~~ 1116 (1613)
..|..|+..++|++. |+.....++.-.+. +.|+.|..++..+
T Consensus 191 ~~~~~~~~~~~~af~-G~e~~~~~aeE~k~P~r~iprai~~s~~ 233 (442)
T TIGR00908 191 VGVFAAIPFAIWFFL-AVEGVAMAAEETKNPKRDIPRGLIGAIL 233 (442)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccccCHHHHHHHH
Confidence 357788888888884 77777777766543 4567776554433
No 264
>KOG0792|consensus
Probab=43.22 E-value=11 Score=50.94 Aligned_cols=68 Identities=26% Similarity=0.304 Sum_probs=50.3
Q ss_pred CCccceEEEEeecccccccCcceeEEEEec-------------CCChhhhcC--CCCCCEEEEEcCeecCCCCHHHHHHH
Q psy8107 367 DHMWGFSVEAELTENAERQDELCCYVSRVE-------------DKSVAMHNG--LIKGDEIMVINGAIVSDLDMMYLESV 431 (1613)
Q Consensus 367 ~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~-------------~gg~A~~~G--L~~GDeIl~vNg~~v~~l~~~~~~~l 431 (1613)
.+-|||.+.|-+...---.+ ...-+++|. |+++|...+ +-.||++..+||+++.+..++.++.+
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~-~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ 793 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLN-EPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSL 793 (1144)
T ss_pred Cccccccccchhhhhhcccc-ccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHH
Confidence 58999999983222100001 235788888 888887654 55699999999999999999999999
Q ss_pred HhcC
Q psy8107 432 LQEE 435 (1613)
Q Consensus 432 l~~~ 435 (1613)
+++.
T Consensus 794 irs~ 797 (1144)
T KOG0792|consen 794 IRSP 797 (1144)
T ss_pred Hhhh
Confidence 9644
No 265
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=43.12 E-value=38 Score=33.93 Aligned_cols=51 Identities=14% Similarity=0.300 Sum_probs=41.9
Q ss_pred ceEEEEEEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHHH
Q psy8107 1328 EIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQI 1394 (1613)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1394 (1613)
.-...+|.||+.+|++.... -.+..|+-|.|.+..|+++.|.+....|++.
T Consensus 43 ~kY~~~w~IPL~dl~~~~~~----------------~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 43 QQYDCKWYIPLADLSFPSEP----------------FRIHNKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred cccceeEEEEhHHheecchh----------------hhccccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 45678999999999997662 2233688999999999999999999998764
No 266
>KOG1739|consensus
Probab=42.57 E-value=34 Score=42.84 Aligned_cols=80 Identities=16% Similarity=0.379 Sum_probs=59.4
Q ss_pred CCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHH
Q psy8107 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWV 100 (1613)
Q Consensus 21 R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi 100 (1613)
.+|...|++|+...|..||.+... ....++.|.+.-+..... .--.+-|-+.+. ++...+.|.+.++.+.|+
T Consensus 38 ~gwqdRyv~lk~g~Lsyykse~E~----~hGcRgsi~l~ka~i~ah---EfDe~rfdIsvn-~nv~~lra~~~~hr~~w~ 109 (611)
T KOG1739|consen 38 HGWQDRYVVLKNGALSYYKSEDET----EHGCRGSICLSKAVITAH---EFDECRFDISVN-DNVWYLRAQDPDHRQQWI 109 (611)
T ss_pred ccccceEEEEcccchhhhhhhhhh----hcccceeeEeccCCcccc---cchhheeeeEec-cceeeehhcCcHHHHHHH
Confidence 468899999999999999987432 234556777775544333 134678888887 677788888899999999
Q ss_pred HHHHHHHH
Q psy8107 101 NSIHSACA 108 (1613)
Q Consensus 101 ~~I~~aaa 108 (1613)
.+|.-.-+
T Consensus 110 d~L~wmk~ 117 (611)
T KOG1739|consen 110 DALEWMKT 117 (611)
T ss_pred HHHHHHhh
Confidence 99987655
No 267
>PTZ00206 amino acid transporter; Provisional
Probab=42.01 E-value=1.5e+02 Score=38.08 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=19.0
Q ss_pred cchhhHHHHHHHHhhhhHHHHHHHHHHH
Q psy8107 923 VGISSCLVTFFVALYYNVIITWCFYYLF 950 (1613)
Q Consensus 923 vG~~~~li~~li~~YYsVi~aW~L~Y~~ 950 (1613)
+.+..++.++..++-|.+++|-.+.-++
T Consensus 139 v~~~~~~~~~G~cv~YlIiigd~l~~~l 166 (467)
T PTZ00206 139 VAATRAFHGFSACVAYVISVGDILSATL 166 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556677788888888887765444
No 268
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=41.96 E-value=2.2e+02 Score=35.53 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhh
Q psy8107 1160 IVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204 (1613)
Q Consensus 1160 i~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D 1204 (1613)
.++|.+..+. .+..+..++...++.+++++.-+.+....+.+.+
T Consensus 281 ~~~p~~~~~~-lp~~l~gl~~agilaA~mST~~s~l~a~ss~~~~ 324 (407)
T TIGR00813 281 QAYPLLVQEL-MPPGLAGLFLAAILAAVMSTLSSQLNSASTVFTM 324 (407)
T ss_pred hHHHHHHHHH-cCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3456555542 2467888999999999999999999888887744
No 269
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=40.54 E-value=40 Score=41.96 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=31.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhc
Q psy8107 1161 VFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDI 1205 (1613)
Q Consensus 1161 ~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~ 1205 (1613)
++|..+.+. .++..+.+|+..++-+.++|.-+.+....+.+...
T Consensus 280 ~~~~~~~~~-~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~~~D 323 (406)
T PF00474_consen 280 AFPYLAAQY-LPPGLAGLFLAGILAAIMSTADSLLLAISSIFSRD 323 (406)
T ss_dssp HHHHHHT-T-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhh-ccchhHHHHHHHHHHhhhHHHHHHHhhhhhhhhHH
Confidence 566666543 23567788888888888899889998888886543
No 270
>KOG1451|consensus
Probab=40.46 E-value=64 Score=41.40 Aligned_cols=99 Identities=10% Similarity=0.235 Sum_probs=62.1
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCC-
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAF- 82 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~d- 82 (1613)
+.|+|+--.+. . .+ .+|-+|||+-.-.+=.|--.....+....-.+...+-+..|.--+ .|--.|.+.|-+.+.+
T Consensus 267 ~eGYlY~QEK~-~-~g-~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRk-tdSIdKRFCFDve~~er 342 (812)
T KOG1451|consen 267 KEGYLYMQEKS-K-IG-KSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRK-TDSIDKRFCFDVEVEER 342 (812)
T ss_pred cceeeeehhhh-h-cc-chhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCc-ccccccceeeeeeeccc
Confidence 35666654331 1 22 479999999765433332222222222222344567777665444 3555778899988877
Q ss_pred CCeEEeecCCHHHHHHHHHHHHHH
Q psy8107 83 GDAYLFQAPCQVELENWVNSIHSA 106 (1613)
Q Consensus 83 g~~yLFQA~~~~em~~Wi~~I~~a 106 (1613)
-.+.-+||-+++|...|+.+..-+
T Consensus 343 pgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 343 PGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred CCeeehHhhhhhHHHHHHHHhcCC
Confidence 567889999999999999988654
No 271
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=40.33 E-value=26 Score=32.57 Aligned_cols=38 Identities=21% Similarity=0.438 Sum_probs=34.3
Q ss_pred eEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCc
Q psy8107 276 SVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPM 313 (1613)
Q Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~ 313 (1613)
.++|--++|+.+.+.|++.+++..++...|+.+++++.
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~ 39 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPE 39 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCcc
Confidence 35777899999999999999999999999999999974
No 272
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=38.29 E-value=1.2e+02 Score=38.70 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhh
Q psy8107 1161 VFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204 (1613)
Q Consensus 1161 ~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D 1204 (1613)
++|....+. .++....++...++.+.++|.-+.+....+.+..
T Consensus 306 ~~p~~~~~~-lp~~~~gl~~a~llaA~mST~~s~l~~~ss~~~~ 348 (471)
T TIGR02119 306 VIPLLAIKV-LPPILAGIFLAAPMAAIMSTVNSLLLQSSSTIIK 348 (471)
T ss_pred hHHHHHHHH-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456554431 3467788999999999999999998888777643
No 273
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=37.96 E-value=8.4e+02 Score=31.01 Aligned_cols=181 Identities=16% Similarity=0.255 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHhhh---cccccceeeeeehhhHHH--HHHHHHHHHhccCCChhcc---ceeeeccccccccChhHH
Q psy8107 1005 IVLCLLLAWIIVFFIVM---KGIQSSGRVVYFTSMFPY--IVLTIFFIRGITLPGAGAG---LVHMYTPKVEKLLDPNVW 1076 (1613)
Q Consensus 1005 l~l~l~l~w~iv~~~v~---kGI~~~gKv~~~~~l~P~--vlL~iLlir~ltL~Ga~~G---l~~lf~Pd~s~L~~~~vW 1076 (1613)
+.++.++-..++++... |=+++.||+ +-|. ++++++++.++.-|...-+ =.|.-.|=..-+.+...=
T Consensus 120 l~ifs~ifF~ia~~~sl~psklid~vGk~-----LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~T 194 (431)
T COG1114 120 LFIFSVIFFAIAYLFSLNPSKLIDRVGKF-----LTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLT 194 (431)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHH
Confidence 33333333444444333 446788888 6675 5667777777766643322 222334444555566666
Q ss_pred HHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhccccccccccCCCceecccCCCc
Q psy8107 1077 LDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTG 1156 (1613)
Q Consensus 1077 ~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~~~~i~~~~~~G~g 1156 (1613)
+||++-.+|+. ++ .-+...++..-.++-.-.+....+++.+.-..++-.++|++.... ......++|..
T Consensus 195 MDaLAal~Fgi------vI-v~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~----~~~~~~~nG~~ 263 (431)
T COG1114 195 MDALAALAFGI------VI-VNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSA----SAAGLAANGGQ 263 (431)
T ss_pred HHHHHHHHHHH------HH-HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH----hhcccccchHH
Confidence 78877776654 22 222222222222222222222233333333344545555542110 01111111211
Q ss_pred eehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhcc
Q psy8107 1157 LAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIE 1206 (1613)
Q Consensus 1157 L~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D~~ 1206 (1613)
.+..+ ++--+|..-..++=+++++|.+|++++++-..-..+.+..
T Consensus 264 ----IL~~~-s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~ 308 (431)
T COG1114 264 ----ILSAY-SQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLV 308 (431)
T ss_pred ----HHHHH-HHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 1112344445555667778889999998888777777654
No 274
>KOG4371|consensus
Probab=37.67 E-value=44 Score=45.42 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=60.1
Q ss_pred eEEEEEEecCCCCccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC
Q psy8107 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE 435 (1613)
Q Consensus 356 ~~~v~l~k~~~~~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~ 435 (1613)
...+++.|.+ +..|--+.. .. .++.|+...-.|.-.+-.|++||-++.+||+.|.+--+.+++..++.+
T Consensus 1148 ~i~~~~~r~~--~~l~~~~a~----~~-----~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~ 1216 (1332)
T KOG4371|consen 1148 VIDVELDRNE--GSLGVQIAS----LS-----GRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGG 1216 (1332)
T ss_pred cccccCCCCC--CCCCceecc----Cc-----cceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhcc
Confidence 3456676766 556654433 22 236788888888888999999999999999999999999999999765
Q ss_pred -CeEEEEEee
Q psy8107 436 -LSLCMMMRS 444 (1613)
Q Consensus 436 -~~l~L~vr~ 444 (1613)
+.|-|-|.|
T Consensus 1217 ~~~~~~~~~r 1226 (1332)
T KOG4371|consen 1217 GDRVVLGVQR 1226 (1332)
T ss_pred CceEEEEeec
Confidence 778777754
No 275
>KOG0193|consensus
Probab=37.20 E-value=81 Score=41.09 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=36.7
Q ss_pred CceEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCcc
Q psy8107 274 DKSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPME 314 (1613)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~ 314 (1613)
..+..|+|||.|-..|.++.|+|+.|-|.-+-|++++.|.-
T Consensus 96 ~~~~~v~Lpn~q~t~v~~~~g~s~~d~~~k~l~~r~~tP~~ 136 (678)
T KOG0193|consen 96 FPTKRVHLPNKQRTVVSVRSGVSVRDSLLKALKKRGLTPDC 136 (678)
T ss_pred CCceEEeccCcceeEEEeecCCccchHHHhhhhhccCCCcc
Confidence 34569999999999999999999999999999999987654
No 276
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=37.17 E-value=53 Score=32.09 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=36.5
Q ss_pred ceEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCc
Q psy8107 275 KSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPM 313 (1613)
Q Consensus 275 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~ 313 (1613)
..+.|.-++|..+.+-|++.+|++++....|++.+++|.
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~ 50 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMN 50 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCcc
Confidence 467899999999999999999999999999999999875
No 277
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.09 E-value=1.4e+02 Score=31.90 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=48.5
Q ss_pred eEEEEEEeCCeEEEecCCCcCCC---CCCCCCCceeEeCceEEee-CCCCCCCCceEEEEcCC-CCeEEeecCCHHHHHH
Q psy8107 24 KGYWVCLKGTTLLFYPCDSREGR---SVDAAPKHLIIVDGAIMQP-IPEHPKRDYIFCLSTAF-GDAYLFQAPCQVELEN 98 (1613)
Q Consensus 24 k~~~~vLkG~~L~fyKd~~~~~~---~~~~~p~~~I~l~~~~~~~-a~dy~KK~nVF~L~t~d-g~~yLFQA~~~~em~~ 98 (1613)
+..++-|=...+.|-|-....+. .....-++.|.+.+--.+. +.+- +.-|.+...+ -..|.+||++.+.-+.
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd---~~kFeiw~~~~~~~yilqA~t~e~K~~ 106 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGD---TKKFEIWYNAREEVYILQAPTPEIKAA 106 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCC---ccEEEEEeCCCCcEEEEEcCCHHHHHH
Confidence 45677788888888776543221 1122334455554332222 2221 2234443333 3689999999999999
Q ss_pred HHHHHHHHHH
Q psy8107 99 WVNSIHSACA 108 (1613)
Q Consensus 99 Wi~~I~~aaa 108 (1613)
|+..|+....
T Consensus 107 Wv~~I~~iL~ 116 (133)
T cd01227 107 WVNEIRKVLT 116 (133)
T ss_pred HHHHHHHHHH
Confidence 9999986633
No 278
>KOG1289|consensus
Probab=36.43 E-value=2.6e+02 Score=36.34 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=26.1
Q ss_pred EEEEeEeeechhhhhhcccCCccceeeehhhhhhhheeeeccc
Q psy8107 1267 LYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERL 1309 (1613)
Q Consensus 1267 wiyg~~~~~~i~~mlg~~~~~~~~w~~~w~fitPvill~~~~~ 1309 (1613)
++++-+-+..-..-+|+..+...+|.++|..+.-+++..|..+
T Consensus 439 lf~~r~~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~ 481 (550)
T KOG1289|consen 439 LFFGRDDFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVY 481 (550)
T ss_pred eeecccccCCCCccccccccchHHHHHHHHHHHHHHHhCCccc
Confidence 4443332334455677766666778888988876666555533
No 279
>PRK09950 putative transporter; Provisional
Probab=36.25 E-value=21 Score=45.98 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccC-CCceecc-cCCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcc
Q psy8107 1115 SICNALTAIYASVVVFAILGFKAMSNAAEG-TGLAFIA-AEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQI 1192 (1613)
Q Consensus 1115 ~~~n~~vSllAgl~IFsilG~~a~~~~~~~-~~i~~~~-~~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~i 1192 (1613)
++...++-.+.+++.|+++|-.+......+ .++.... ++|. -.++-+++.++|.+.+..++|.+.+++.=.||.=
T Consensus 345 ilg~l~~psl~~~~wf~ifGg~ai~l~~~g~~~~~~~~~~~~~---~~a~~~~l~~lP~~~i~~~l~~vl~~if~vTs~D 421 (506)
T PRK09950 345 IWGLILGSSVGCWFFFGVLESYAIHQFINGVINVPQILNTLGG---ETAVQQLLSSLPAGKLFLAAYLGIMIIFLASHMD 421 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHccCc---chHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444555566667777764443211111 1222212 2332 3456678999999999999999999888888877
Q ss_pred hhhhhhhhhh
Q psy8107 1193 GILEGVLCTI 1202 (1613)
Q Consensus 1193 sllE~iVt~l 1202 (1613)
+..-++-+.-
T Consensus 422 S~s~vla~~t 431 (506)
T PRK09950 422 AVAYTMAATS 431 (506)
T ss_pred HHHHHHHHHH
Confidence 7665555443
No 280
>PRK12488 acetate permease; Provisional
Probab=35.93 E-value=2.9e+02 Score=36.23 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=17.0
Q ss_pred cchhhHHHHHHHHhhhhHHHHHHHHHHHhhcc
Q psy8107 923 VGISSCLVTFFVALYYNVIITWCFYYLFNSFS 954 (1613)
Q Consensus 923 vG~~~~li~~li~~YYsVi~aW~L~Y~~~Sf~ 954 (1613)
+.++..++.++..+.|.+..-...-.+++.+.
T Consensus 145 ~r~laai~~i~~~~~yl~~q~~g~g~il~~l~ 176 (549)
T PRK12488 145 VRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF 176 (549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555566555555555555554
No 281
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=35.46 E-value=31 Score=44.50 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccC-CCcee-cccCCCceehHHHHHHHHhCCChhHHHHHHHHHHHHHhhhhcch
Q psy8107 1116 ICNALTAIYASVVVFAILGFKAMSNAAEG-TGLAF-IAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIG 1193 (1613)
Q Consensus 1116 ~~n~~vSllAgl~IFsilG~~a~~~~~~~-~~i~~-~~~~G~gL~Fi~lP~af~~mp~g~l~avLFFl~L~lagltS~is 1193 (1613)
+...++--+.+++.|+++|-.+......+ .++.. +.+.| .-.++-++|.++|.+.+..++|.+++++.=+||+=+
T Consensus 349 lg~l~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~~~---~~~alf~~l~~lPl~~i~~~l~~il~~if~vTsaDS 425 (504)
T PRK03356 349 FGMVLGLTASTWILWTVLGSNTLLLMDKNIINIPNLIEQYG---VARAIIETWAALPLSTATMWGFFILCFIATVTLINA 425 (504)
T ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHcCchhHHHHHhccC---hhhHHHHHHHHCcHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34444555566667777764443211111 12222 22233 234566889999999999999999988887777766
Q ss_pred hhhhhhhhhh
Q psy8107 1194 ILEGVLCTIF 1203 (1613)
Q Consensus 1194 llE~iVt~l~ 1203 (1613)
..-++.+.-.
T Consensus 426 ~t~vla~~ts 435 (504)
T PRK03356 426 CSYTLAMSTC 435 (504)
T ss_pred HHHHHHHHHc
Confidence 5555444433
No 282
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=35.14 E-value=63 Score=30.47 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=45.6
Q ss_pred cHHHHhhhhhccChHHHHHhHHHHHHhhhcCCcc---hhhhHHHHHHHHHhhhhhcccchhhh
Q psy8107 124 LQEEIFRLEKAIDSDNKLKHMADLQMSVLAEPET---KQQINEQITQWEENLERLHCEQFRLR 183 (1613)
Q Consensus 124 ~~~e~~~~~~ki~~e~k~k~~~~~~~~~~~~~~~---kk~~~~~i~~~~~k~e~l~~e~~Ry~ 183 (1613)
+...+..+.++++.|.+.+.-++-........+. ......++.+-.+|++.|..++.||.
T Consensus 7 ~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 7 LQSRLERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778888888888877766655554444 55667789999999999999999996
No 283
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=34.87 E-value=55 Score=36.67 Aligned_cols=38 Identities=26% Similarity=0.128 Sum_probs=30.9
Q ss_pred cceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEEEEc
Q psy8107 370 WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVIN 416 (1613)
Q Consensus 370 ~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl~vN 416 (1613)
.|+.+.. + | ..+.|..|..||+|+++|+.-|++|.+|-
T Consensus 113 ~GL~l~~---e--~----~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLME---E--G----GKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred CCCEEEe---e--C----CEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 5777665 1 1 23899999999999999999999998873
No 284
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=34.30 E-value=1e+03 Score=29.89 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHhhhhcchhhhh
Q psy8107 1172 APFWSIIFFMMLLSLGLGSQIGILEG 1197 (1613)
Q Consensus 1172 g~l~avLFFl~L~lagltS~isllE~ 1197 (1613)
|+.-..+|-+.|+.+|++|.+..--.
T Consensus 291 G~~a~~lF~igLlaAG~sS~it~~~a 316 (390)
T TIGR01197 291 SPAAGYIFAVGLLAAGQSSGMVGTYS 316 (390)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55666778888999999999877653
No 285
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=34.15 E-value=7.4e+02 Score=31.75 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=56.7
Q ss_pred HHHHHHHhhchhhHHHHHHHhheeEEeecC---chhHHHHhhhccCCcccccccccccccchhhhh------HHhhhhee
Q psy8107 793 WLKLFDSFAGTIGLVLIALIEMLAVMFIYG---HEKFTNDIYEMTGYKPGWYWQITWRFLGPAIMS------CILVSSII 863 (1613)
Q Consensus 793 v~eL~D~y~a~~~ll~~al~E~i~i~WiyG---~~rf~~di~~m~G~~~~~yWk~cW~fItP~il~------~I~i~~ii 863 (1613)
+++.+|.+-=+.+++..-+.-.+...|--| ..+|-+-++.|.+.+-+. .-=+=++|+=.+ -++.+|+.
T Consensus 7 ~~~~in~~lWg~~li~lLlg~Gl~fT~r~~f~Qfr~l~~~~k~~~~~~~~~---~~~~~vS~FqAl~~sla~~VGtGNIa 83 (452)
T COG1115 7 FLEFINDFLWGYPLIYLLLGTGLYFTIRLGFVQFRHLKEMFKLLFGSRKGK---AGKGGVSSFQALMTSLAARVGTGNIA 83 (452)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhheeCceeeehHHHHHHHHhcCcccC---CCCCCcChHHHHHHHHHhccCcchHH
Confidence 445555555455555444444444555555 356666667777665322 112233443333 34444443
Q ss_pred eeccCCCcccccccchhHhHHHHHhhhcchhhhHHHhhhhccCC
Q psy8107 864 CRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRL 907 (1613)
Q Consensus 864 ~~~~~~P~Y~~~g~~FLIpYli~l~liGlPll~lElalGQ~~r~ 907 (1613)
.-- .--..+|-||-+-.++++ ++|.-.-+.|-.|||..|.
T Consensus 84 GVA--tAI~~GGPGAvFWMWi~A--l~Gmat~f~E~~La~~Yr~ 123 (452)
T COG1115 84 GVA--TAIALGGPGAVFWMWIVA--LFGMATKFAESTLAQKYRV 123 (452)
T ss_pred HHH--HHHHcCCCccHHHHHHHH--HHHHHHHHHHHHHHhheeE
Confidence 210 000112226766555555 4588889999999998883
No 286
>KOG3676|consensus
Probab=33.66 E-value=3.3e+02 Score=36.86 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccceee
Q psy8107 1005 IVLCLLLAWIIVFFIVMKGIQSSGRV 1030 (1613)
Q Consensus 1005 l~l~l~l~w~iv~~~v~kGI~~~gKv 1030 (1613)
++..+.+.|.. ++-..+|++..|-.
T Consensus 507 lvfAl~lgW~~-~Lyf~Rgfq~~Gpf 531 (782)
T KOG3676|consen 507 LVFALVLGWKN-LLYFTRGFQLTGPF 531 (782)
T ss_pred HHHHHHHHHHH-HHHHHhcccccccH
Confidence 44556666665 55567888888754
No 287
>PF07497 Rho_RNA_bind: Rho termination factor, RNA-binding domain; InterPro: IPR011113 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [].; GO: 0003723 RNA binding, 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=33.19 E-value=34 Score=33.16 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=20.9
Q ss_pred CccceEEEEeecccccccCcceeEEEEecCCChhhhcCCCCCCEEE
Q psy8107 368 HMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIM 413 (1613)
Q Consensus 368 ~~~GF~v~~~~~~~~~~~~~~~~~Vs~V~~gg~A~~~GL~~GDeIl 413 (1613)
+|||| ++. .++.-.+...-+||| .+.-.+-|||.||.|.
T Consensus 12 dGyGF-LR~--~~~~y~~~~~DvYVs----~~qIrrf~LR~GD~V~ 50 (78)
T PF07497_consen 12 DGYGF-LRS--PDNNYLPSPDDVYVS----PSQIRRFGLRTGDLVE 50 (78)
T ss_dssp TS-EE-EE---GGGTTS-STTSEEE-----CCCCCCTT--TTEEEE
T ss_pred CCcEE-eEC--CCcCCCCCCCCEEEC----HHHHHHcCCCCCCEEE
Confidence 78999 666 211112222338986 4566899999999886
No 288
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=31.67 E-value=5.1e+02 Score=33.82 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=19.1
Q ss_pred HHHhhhhHHHHHHHHHHHhhcccCCCCC
Q psy8107 933 FVALYYNVIITWCFYYLFNSFSSSLPWS 960 (1613)
Q Consensus 933 li~~YYsVi~aW~L~Y~~~Sf~~~lpW~ 960 (1613)
++-+.-+++.|+.=..++..|.|. -|.
T Consensus 304 ~~y~~~~~iaGy~S~~~yk~~~g~-~W~ 330 (521)
T PF02990_consen 304 ILYALTSFIAGYVSARLYKSFGGK-KWK 330 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCC-cee
Confidence 334445678888888888988876 353
No 289
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=31.65 E-value=76 Score=29.48 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=36.8
Q ss_pred eEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCcccee
Q psy8107 276 SVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFV 317 (1613)
Q Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~ 317 (1613)
.+.|..++|+.+.+.+.+..|+.++-...|...++.|...-|
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL 43 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEE
Confidence 357888999999999999999999999999999998886433
No 290
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=31.37 E-value=68 Score=28.97 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=40.1
Q ss_pred hhhhccChHHHHHhHHHHHHhhhcCCc-chhhhHHHHHHHHHhhhhhcccchh
Q psy8107 130 RLEKAIDSDNKLKHMADLQMSVLAEPE-TKQQINEQITQWEENLERLHCEQFR 181 (1613)
Q Consensus 130 ~~~~ki~~e~k~k~~~~~~~~~~~~~~-~kk~~~~~i~~~~~k~e~l~~e~~R 181 (1613)
.+.++|+.|.+++.-++-....-++.. .+..-...+.+=+.|++||+.++.|
T Consensus 5 ~L~~ki~~E~~i~~Gae~m~~~~~~~~k~~~~a~~~l~es~~ki~~L~~~L~~ 57 (57)
T smart00742 5 DLRRKIEKELKVKEGAENMRKLTSNDRKVLSEAQSMLRESNQKLDLLKEELEK 57 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356788999999998888776665543 4556667788999999999988764
No 291
>PRK10238 aromatic amino acid transporter; Provisional
Probab=30.74 E-value=6.5e+02 Score=32.02 Aligned_cols=98 Identities=10% Similarity=0.182 Sum_probs=44.9
Q ss_pred HHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHh----ccC-CChhccceeeec-cccccccChhHHHHHHhhHHHh
Q psy8107 1013 WIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRG----ITL-PGAGAGLVHMYT-PKVEKLLDPNVWLDAATQVFYS 1086 (1613)
Q Consensus 1013 w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~----ltL-~Ga~~Gl~~lf~-Pd~s~L~~~~vW~~A~~QaFfS 1086 (1613)
++++...-..|+|..+++-.+...+-.+.++++++-+ ..- ++.......++. .+|.. .....+..++..++|+
T Consensus 134 ~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~a 212 (456)
T PRK10238 134 FVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLP-HGFTGLVMMMAIIMFS 212 (456)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCcc-ccHHHHHHHHHHHHHH
Confidence 3456666677888888775544444332222211111 111 111111222111 11210 0123455777788888
Q ss_pred hcccccceehhccccC-CCCcccccee
Q psy8107 1087 FGLAFGSLIAFGSYNQ-PNNNCVRDVI 1112 (1613)
Q Consensus 1087 LslG~G~mitygSY~~-~~~ni~rda~ 1112 (1613)
+ .|+-....++.-.+ .+.|+.|...
T Consensus 213 f-~G~e~~~~~aeE~knP~r~iPrAi~ 238 (456)
T PRK10238 213 F-GGLELVGITAAEADNPEQSIPKATN 238 (456)
T ss_pred h-cCHHHHHHHHHhhcChhhHHHHHHH
Confidence 6 45555555554443 3446666553
No 292
>PRK09395 actP acetate permease; Provisional
Probab=30.59 E-value=3e+02 Score=36.11 Aligned_cols=14 Identities=7% Similarity=0.657 Sum_probs=7.8
Q ss_pred HHHHHhhhcccccc
Q psy8107 1014 IIVFFIVMKGIQSS 1027 (1613)
Q Consensus 1014 ~iv~~~v~kGI~~~ 1027 (1613)
+++...+..|++..
T Consensus 192 i~~iYt~~GGm~av 205 (551)
T PRK09395 192 LMMVYVLFGGMLAT 205 (551)
T ss_pred HHHHHHhhcchHHH
Confidence 34445556677654
No 293
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=30.39 E-value=57 Score=32.89 Aligned_cols=27 Identities=11% Similarity=0.412 Sum_probs=25.1
Q ss_pred ccceEEeecCChHHHHHHHHHHHHHHH
Q psy8107 1370 TEKVYVLSNSTAEFRNAFLKTIRQIIR 1396 (1613)
Q Consensus 1370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1396 (1613)
|+++|.|++.+.+.|...+++|++.|.
T Consensus 75 ~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 75 PERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 689999999999999999999998874
No 294
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=30.00 E-value=68 Score=30.11 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=36.3
Q ss_pred eEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCcccee
Q psy8107 276 SVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFV 317 (1613)
Q Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~ 317 (1613)
.+.|..++|+...+-|.+++||.|+-+..|...++.|..--|
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L 43 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRL 43 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEE
Confidence 356788999999999999999999999999999998766333
No 295
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=29.99 E-value=3.7e+02 Score=34.99 Aligned_cols=77 Identities=8% Similarity=0.053 Sum_probs=47.0
Q ss_pred eeehhhHHHHHHHHHHHHhccCCChhccceeeeccccc-cccChhHHHHHHhhHHHhhcc-c------ccceehhccccC
Q psy8107 1031 VYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVE-KLLDPNVWLDAATQVFYSFGL-A------FGSLIAFGSYNQ 1102 (1613)
Q Consensus 1031 ~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~lf~Pd~s-~L~~~~vW~~A~~QaFfSLsl-G------~G~mitygSY~~ 1102 (1613)
.|+.+++..-+=+.++.+++.=| +.|+..|-+. .=.+.+....|+.+.||..|+ + .|.-++|..|++
T Consensus 90 sW~aMlf~aG~G~gllfwgvaEP-----~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~~ 164 (504)
T PRK03356 90 SWIFMMFASCTSAAVLFWGSIEI-----YYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFVR 164 (504)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhH-----HHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333444555554433 4555566432 113578888999999999987 2 466688999999
Q ss_pred CCCc-ccccee
Q psy8107 1103 PNNN-CVRDVI 1112 (1613)
Q Consensus 1103 ~~~n-i~rda~ 1112 (1613)
+... ..++++
T Consensus 165 ~~p~l~iss~~ 175 (504)
T PRK03356 165 KMDVIRPSSTL 175 (504)
T ss_pred CCCcccHHHHH
Confidence 8875 444444
No 296
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=29.87 E-value=4.6e+02 Score=27.37 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=47.7
Q ss_pred CceEEEEEEeC--CeEEEecCCCcCCCCCCCCCCceeEeCceEEeeC-CCCC------CCCceEEEEcCCCCeEEeecCC
Q psy8107 22 GWKGYWVCLKG--TTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI-PEHP------KRDYIFCLSTAFGDAYLFQAPC 92 (1613)
Q Consensus 22 ~Wk~~~~vLkG--~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~a-~dy~------KK~nVF~L~t~dg~~yLFQA~~ 92 (1613)
+.+..|+-|.. .+|+|...+...+. ....-...|.|..-..... ...+ +..++|-+.|++ +..-|-|++
T Consensus 29 ~~h~R~fwv~~~~~~L~Ws~~~p~~~~-~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~-R~L~l~a~s 106 (123)
T PF12814_consen 29 KPHRRYFWVDPYTRTLYWSSSNPKSEN-PSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPD-RSLDLTAPS 106 (123)
T ss_pred CcEEEEEEEeCCCCEEEecCCCCCccc-cccccccceEEeeeEEecCCCCCCccccccccceEEEEEcCC-eEEEEEeCC
Confidence 44555555554 68888764422111 1111112345543322221 1111 134577777665 789999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8107 93 QVELENWVNSIHSAC 107 (1613)
Q Consensus 93 ~~em~~Wi~~I~~aa 107 (1613)
.++-+-|+++|+.-+
T Consensus 107 ~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 107 RERHEIWFNALRYLL 121 (123)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998653
No 297
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=28.07 E-value=2e+02 Score=36.97 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=31.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhhh
Q psy8107 1161 VFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204 (1613)
Q Consensus 1161 ~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~D 1204 (1613)
++|....+. .++....++...++-|.++|.-+.+-..-+.+.+
T Consensus 306 ~~~~~~~~~-~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~ 348 (487)
T TIGR02121 306 IFIVLSQIL-FHPWIAGILLAAILAAIMSTISSQLLVSSSALTE 348 (487)
T ss_pred hHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655543 2355678899999999999999999888777644
No 298
>PRK09950 putative transporter; Provisional
Probab=27.72 E-value=4.2e+02 Score=34.52 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=42.7
Q ss_pred eeehhhHHHHHHHHHHHHhccCCChhccceeeeccccc-cccChhHHHHHHhhHHHhhcc-------cccceehhccccC
Q psy8107 1031 VYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVE-KLLDPNVWLDAATQVFYSFGL-------AFGSLIAFGSYNQ 1102 (1613)
Q Consensus 1031 ~~~~~l~P~vlL~iLlir~ltL~Ga~~Gl~~lf~Pd~s-~L~~~~vW~~A~~QaFfSLsl-------G~G~mitygSY~~ 1102 (1613)
.|+.+++..-+-+.++.+++ .|=+.|+.+|-+. .=.+.+....|+.+.||..|+ =.|.-++|..|.+
T Consensus 88 sW~aMlf~aG~G~gllfwgv-----aEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~r 162 (506)
T PRK09950 88 SWLFMFICAGLGSSTLYWGV-----MEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHVR 162 (506)
T ss_pred hHHHHHHHHhhhhHHHHHhh-----HhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444455555554 3445555566542 123577888899999999986 2355677855555
Q ss_pred CCCcc
Q psy8107 1103 PNNNC 1107 (1613)
Q Consensus 1103 ~~~ni 1107 (1613)
++...
T Consensus 163 k~~pl 167 (506)
T PRK09950 163 KNKGL 167 (506)
T ss_pred cCCCC
Confidence 55544
No 299
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.95 E-value=1.3e+02 Score=30.36 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=38.6
Q ss_pred EeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHH
Q psy8107 1335 LVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQ 1393 (1613)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1393 (1613)
+|++..+.||.....-.+-.+..|++.... .++|-+|.++ |.|+.-++.|+.
T Consensus 46 li~l~~~~V~~v~ds~~~r~~cFel~~~~~------~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 46 LIDLSDAYLYPVHDSLFGRPNCFQIVERAL------PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred eeeccccEEEEccccccCCCeEEEEecCCC------CeEEEEeCCH-HHHHHHHHHHhc
Confidence 588899999876443233346678875322 3899999999 999999998874
No 300
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.82 E-value=3.2e+02 Score=27.32 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=43.2
Q ss_pred ceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCc-eEEeeCCCCCCCCceEEEEcCCCCeEEeecCCHHHHHHHHH
Q psy8107 23 WKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDG-AIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVN 101 (1613)
Q Consensus 23 Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~-~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~ 101 (1613)
+|+.=.+|...-=++|=|... -.-++-|.+.. ++.... |..+-|.+.|+. ++|.|.-. ....+.|++
T Consensus 15 ~kkR~LiLTd~PrL~yvdp~~------~~~KgeIp~s~~~l~v~~----~~~~~F~I~Tp~-rty~leD~-~~~a~~W~~ 82 (89)
T cd01262 15 AKKRQLILTNGPRLIYVDPVK------KVVKGEIPWSDVELRVEV----KNSSHFFVHTPN-KVYSFEDP-KGRASQWKK 82 (89)
T ss_pred cceeeEEEecCceEEEEcCCc------CeEEeEecccccceEEEE----ecCccEEEECCC-ceEEEECC-CCCHHHHHH
Confidence 466667777443334444422 12233455554 333222 455789998875 67777644 367788999
Q ss_pred HHHHHH
Q psy8107 102 SIHSAC 107 (1613)
Q Consensus 102 ~I~~aa 107 (1613)
+|+.+.
T Consensus 83 ~I~~~~ 88 (89)
T cd01262 83 AIEDLQ 88 (89)
T ss_pred HHHHHh
Confidence 998764
No 301
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=25.79 E-value=1.2e+02 Score=39.27 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=61.0
Q ss_pred hhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhhcccccccccc-CCCcee-cccCCCceehHHHH
Q psy8107 1086 SFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAE-GTGLAF-IAAEGTGLAFIVFT 1163 (1613)
Q Consensus 1086 SLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsilG~~a~~~~~~-~~~i~~-~~~~G~gL~Fi~lP 1163 (1613)
|.+...|..++-=|.-+. .|. .++.-.++-.+-+++.|+++|-.+...... ..++.. ....|+. .++=
T Consensus 326 sWsPfVG~FIARISrGRT----IRE---fi~gvl~~P~~~~~~wftVfG~~ai~~~~~~~~~~~~~~~~~~~e---~alf 395 (537)
T COG1292 326 SWSPFVGMFIARISRGRT----IRE---FIVGVLLIPTLFTWLWFTVFGNYALYLIINGGGGILGLVTTEGPE---TALF 395 (537)
T ss_pred HHhHHHHHHHHHHhCCcc----HHH---HHHHHHHHhHHHHHHHHHHHhhhHHHHHhccccchhhhhhccchh---hHHH
Confidence 566677777765554332 111 222233344455566677777665432111 011111 1112222 2334
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhhh
Q psy8107 1164 QAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIF 1203 (1613)
Q Consensus 1164 ~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l~ 1203 (1613)
.++.++|.+.+.++++.+.+++..+||.=+..-++-+.-.
T Consensus 396 ~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss 435 (537)
T COG1292 396 QVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISS 435 (537)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhc
Confidence 6788999999999999999999999988776555544433
No 302
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=25.20 E-value=1.8e+02 Score=26.90 Aligned_cols=54 Identities=15% Similarity=0.354 Sum_probs=39.5
Q ss_pred EEeecceEEEecCCcCCCCcceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHH
Q psy8107 1334 VLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQ 1393 (1613)
Q Consensus 1334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1393 (1613)
..+|+..++|......+ +.....++++.+. .++.|.|++.+.+.++.++.+|++
T Consensus 45 ~~~~l~~~~v~~~~~~~-~~~~~F~i~~~~~-----~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 45 GSIPLSEISVEEDPDGS-DDPNCFAIVTKDR-----GRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred CEEEccceEEEECCCCC-CCCceEEEECCCC-----CcEEEEEEcCCHHHHHHHHHHHhc
Confidence 45788888877654432 3455666665433 578999999999999999998875
No 303
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.06 E-value=1.2e+02 Score=31.65 Aligned_cols=59 Identities=14% Similarity=0.309 Sum_probs=45.6
Q ss_pred eEEEEEEeecceEEEecCCcCCCC-----cceEEEEEeecccccCCccceEEeecCChHHHHHHHHHHHH
Q psy8107 1329 IIRYQVLVPVTEVQVRASSAKDMD-----SHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQ 1393 (1613)
Q Consensus 1329 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1393 (1613)
-++|.--+-+.+++|+.....|+| -...|+|+|. +-.+.|.+++-|+|.|++.++.+--
T Consensus 46 ~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~------~~~~~~~f~~Ktee~K~kWm~al~~ 109 (116)
T cd01223 46 QYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK------QGKTGFTFYFKTEHLRKKWLKALEM 109 (116)
T ss_pred cEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec------CCCccEEEEeCCHHHHHHHHHHHHH
Confidence 477777777888888887766666 4567899995 2246699999999999998877643
No 304
>KOG3551|consensus
Probab=23.88 E-value=59 Score=39.81 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=55.6
Q ss_pred ccCCCceEEEEEEeCCeEEEecCCCcCCC----CCCCCCCceeEeCceEEeeCCCCCCCCceEEEEcCC---CCeEEeec
Q psy8107 18 ARKRGWKGYWVCLKGTTLLFYPCDSREGR----SVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAF---GDAYLFQA 90 (1613)
Q Consensus 18 ~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~----~~~~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~d---g~~yLFQA 90 (1613)
.++..||...++|....|.+|..--.... .....|--+-.|.|+--....--..-.-+|+++|.. -..|+|..
T Consensus 305 ~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGTrqGV~thlfrv 384 (506)
T KOG3551|consen 305 GGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGTRQGVETHLFRV 384 (506)
T ss_pred CChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEecccccceEEEEEEe
Confidence 34567999999999999999986433211 111122122222222211221111222489999876 35799999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy8107 91 PCQVELENWVNSIHSAC 107 (1613)
Q Consensus 91 ~~~~em~~Wi~~I~~aa 107 (1613)
++..||..|.+.|-.-|
T Consensus 385 EThrdLa~WtRslVqGc 401 (506)
T KOG3551|consen 385 ETHRELAAWTRSLVQGC 401 (506)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999998885544
No 305
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=23.86 E-value=4.3e+02 Score=27.49 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCCeEEeecCCHHHHHHHHHHHHHHHH
Q psy8107 71 KRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACA 108 (1613)
Q Consensus 71 KK~nVF~L~t~dg~~yLFQA~~~~em~~Wi~~I~~aaa 108 (1613)
....-|-|+|+.|- .=|.+.|+.+-+.|++.|+.--+
T Consensus 68 ~~~~yfgL~T~~G~-vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 68 EERRYFGLKTAQGV-VEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred ceEEEEEEEecCcE-EEEEeCChhhHHHHHHHHHHHHH
Confidence 35567999999765 88999999999999999987654
No 306
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.71 E-value=1.9e+02 Score=41.38 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.8
Q ss_pred cchhHh
Q psy8107 877 RAFLIP 882 (1613)
Q Consensus 877 ~~FLIp 882 (1613)
||++-=
T Consensus 68 GA~LAD 73 (1355)
T PRK10263 68 GAWLAD 73 (1355)
T ss_pred HHHHHH
Confidence 555433
No 307
>KOG4407|consensus
Probab=23.68 E-value=40 Score=46.68 Aligned_cols=54 Identities=15% Similarity=0.338 Sum_probs=48.3
Q ss_pred eeEEEEecCCChhhhcCCCCCCEEEEEcCeecCCCCHHHHHHHHhcC-CeEEEEE
Q psy8107 389 CCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE-LSLCMMM 442 (1613)
Q Consensus 389 ~~~Vs~V~~gg~A~~~GL~~GDeIl~vNg~~v~~l~~~~~~~ll~~~-~~l~L~v 442 (1613)
.+||-+|.+.|+|.-+-|+-||.|+-||..+..++--.+++..++.. ..|+|-|
T Consensus 144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~ 198 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHV 198 (1973)
T ss_pred hhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCcee
Confidence 46999999999999999999999999999999999999999999755 5555554
No 308
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=23.33 E-value=1.1e+02 Score=29.07 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCCeEEEEecCCCcHHHHHHhH
Q psy8107 272 EPDKSVKVSLPENQYAHVYLKDSMTVEEFLANA 304 (1613)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (1613)
+....+.|-||||..+.-.+.+.+|+.|+..-+
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v 36 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFV 36 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHH
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHH
Confidence 345678999999999999999999999987643
No 309
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=22.72 E-value=2e+02 Score=36.96 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=29.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhhhhcchhhhhhhhhh
Q psy8107 1161 VFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTI 1202 (1613)
Q Consensus 1161 ~lP~af~~mp~g~l~avLFFl~L~lagltS~isllE~iVt~l 1202 (1613)
.+|.+..+. .++....++...++-+.++|.-+.+....+.+
T Consensus 307 ~~p~l~~~~-lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~~ 347 (483)
T PRK09442 307 VIPTLMLKV-LPPFAAGIFLAAPMAAIMSTVDSQLLQSSSTI 347 (483)
T ss_pred hHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655542 34677888888888888888888887776665
No 310
>KOG3549|consensus
Probab=22.62 E-value=93 Score=37.56 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=65.7
Q ss_pred ccceEEecccccccccCCCceEEEEEEeCCeEEEecCCCcCCCCCCCCCCceeEeCceEEee--CCC-CCCCCceEEEEc
Q psy8107 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQP--IPE-HPKRDYIFCLST 80 (1613)
Q Consensus 4 ~Kg~L~~K~~k~~~~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~~~~p~~~I~l~~~~~~~--a~d-y~KK~nVF~L~t 80 (1613)
+-||...|.. .+-+.+..|..+..|||+.+|.|..+.-..-+-. .++..-.+-...+.. ..| -..|+|.|.|..
T Consensus 283 yMGWvne~~q--~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~-rAe~ty~vye~mfki~Kdsd~~D~R~~CF~~qs 359 (505)
T KOG3549|consen 283 YMGWVNEGVQ--NNISWQSYKPRFLALKGTEVYLFETPPVNTADWS-RAEVTYKVYETMFKIVKDSDTVDSRQHCFLLQS 359 (505)
T ss_pred Eeeecccccc--CcccccccCceeEEecCcEEEEEcCCCcchhhhh-hhhhhHHHHHHHHHHhccccccccccceEEEEc
Confidence 3455555432 1234556677889999999999987643211110 111111111111111 111 247999999999
Q ss_pred CCCCeEEeecCCHHHHHHHHHHHHHHHHh
Q psy8107 81 AFGDAYLFQAPCQVELENWVNSIHSACAA 109 (1613)
Q Consensus 81 ~dg~~yLFQA~~~~em~~Wi~~I~~aaa~ 109 (1613)
..|....|.-+-..|+..|=++.+.|.-.
T Consensus 360 ~~ge~~yfsVEl~seLa~wE~sfq~Atf~ 388 (505)
T KOG3549|consen 360 SGGEPRYFSVELRSELARWENSFQAATFT 388 (505)
T ss_pred CCCCceEEEEehhhHHHHHHHHHhhHHhH
Confidence 99999999999999999999999887654
No 311
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=22.56 E-value=96 Score=28.72 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=35.4
Q ss_pred EEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCcccee
Q psy8107 278 KVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFV 317 (1613)
Q Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~~~ 317 (1613)
.|..++|+.+.+.+.+.+|+.|+-...+...++++....|
T Consensus 2 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L 41 (70)
T cd01798 2 YVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRV 41 (70)
T ss_pred EEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEE
Confidence 4778899999999999999999999999999998776544
No 312
>KOG3784|consensus
Probab=21.96 E-value=99 Score=38.28 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=39.2
Q ss_pred CceEEEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCc--cce-eeeeeec
Q psy8107 274 DKSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPM--EHF-VRVKKRR 323 (1613)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~--~~~-~~~~~~~ 323 (1613)
+...-|-+|||++++|-+.-.+|++++|.++|.+-++.-. .|| |-+-+..
T Consensus 107 ~v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr~~ 159 (407)
T KOG3784|consen 107 EVELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELIGYFGLFLVRDN 159 (407)
T ss_pred eeEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhhhheeeeEEecc
Confidence 3456788999999999999999999999999999998521 255 4444443
No 313
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.94 E-value=7.9e+02 Score=32.97 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccc
Q psy8107 1001 PKWWIVLCLLLAWIIVFFIVMKGI 1024 (1613)
Q Consensus 1001 ~~~~l~l~l~l~w~iv~~~v~kGI 1024 (1613)
+...+.+++++..+.+++++.-|+
T Consensus 442 ~~~~l~lsl~iGvi~i~~g~~l~~ 465 (646)
T PRK05771 442 VMTILIISLLIGVIHLFLGLLLGF 465 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665555554443
No 314
>PRK10836 lysine transporter; Provisional
Probab=21.65 E-value=1.5e+03 Score=29.13 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=20.9
Q ss_pred HHHHHHhhHHHhhcccccceehhccccC-CCCccccceeh
Q psy8107 1075 VWLDAATQVFYSFGLAFGSLIAFGSYNQ-PNNNCVRDVIM 1113 (1613)
Q Consensus 1075 vW~~A~~QaFfSLslG~G~mitygSY~~-~~~ni~rda~~ 1113 (1613)
.++.++..++|++ .|+......+.=.+ .+.|+.|....
T Consensus 206 ~~~~~~~~~~faf-~G~e~~~~~a~E~knP~r~iPrAi~~ 244 (489)
T PRK10836 206 AMIGVAMIVGFSF-QGTELIGIAAGESEDPAKNIPRAVRQ 244 (489)
T ss_pred HHHHHHHHHHHHH-ccHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3445555667777 46666655554433 23456665543
No 315
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=21.24 E-value=2.1e+02 Score=36.98 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=45.0
Q ss_pred hccceeeecccccc-ccChhHHHHHHhhHHHhhcc-c------ccceehhccccCCCCccccceehhhhhH----HHHHH
Q psy8107 1056 GAGLVHMYTPKVEK-LLDPNVWLDAATQVFYSFGL-A------FGSLIAFGSYNQPNNNCVRDVIMVSICN----ALTAI 1123 (1613)
Q Consensus 1056 ~~Gl~~lf~Pd~s~-L~~~~vW~~A~~QaFfSLsl-G------~G~mitygSY~~~~~ni~rda~~v~~~n----~~vSl 1123 (1613)
.|=+.|+.+|-+.. =.+++.-..|+.+.||..|+ + .|..++|..|++.+.--.++++.-.+-+ .+--+
T Consensus 99 aEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ 178 (485)
T PF02028_consen 99 AEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFYNKGKPLRISSALYPLLGDRINGPLGKI 178 (485)
T ss_dssp HHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHTS---SSGGGGCHHHHHHHHHSHHHHH
T ss_pred HhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeeeecCCCCchhhhhhhhcCCcccCcchhh
Confidence 44456666654442 22466778999999999986 3 3666889999966655555555443332 12224
Q ss_pred HHHHHHHhhhcc
Q psy8107 1124 YASVVVFAILGF 1135 (1613)
Q Consensus 1124 lAgl~IFsilG~ 1135 (1613)
+=.+++|++++-
T Consensus 179 ID~l~i~a~~~G 190 (485)
T PF02028_consen 179 IDILAIFATIFG 190 (485)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444556655543
No 316
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=21.13 E-value=1.2e+02 Score=28.53 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=34.4
Q ss_pred EEEcCCCCeEEEEecCCCcHHHHHHhHccccccCCccc
Q psy8107 278 KVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEH 315 (1613)
Q Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~l~~~~~ 315 (1613)
+|.+++|....+-+.|.+||.|+=..+....+++|...
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q 39 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQ 39 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHe
Confidence 68899999999999999999999998888888887764
No 317
>KOG1450|consensus
Probab=20.64 E-value=94 Score=40.96 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=68.4
Q ss_pred ccCCCceEEEEEEeCCeEEEecCCCcCCCCC-C-----CCCCceeEeCceEEeeCCCCCCCCceEEEEcCCCCeEEeecC
Q psy8107 18 ARKRGWKGYWVCLKGTTLLFYPCDSREGRSV-D-----AAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAP 91 (1613)
Q Consensus 18 ~~~R~Wk~~~~vLkG~~L~fyKd~~~~~~~~-~-----~~p~~~I~l~~~~~~~a~dy~KK~nVF~L~t~dg~~yLFQA~ 91 (1613)
.-++.|..-|+.+.|..+++|.+........ . ......-+++.+......+-..+++++.+++..+.+|+.+..
T Consensus 268 l~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (650)
T KOG1450|consen 268 LKSTVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSH 347 (650)
T ss_pred CCCcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCC
Confidence 3456799999999999999999987654432 1 112223344444444556777889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy8107 92 CQVELENWVNSIHSACA 108 (1613)
Q Consensus 92 ~~~em~~Wi~~I~~aaa 108 (1613)
+.....+|.........
T Consensus 348 net~~~d~~~~~~~~~~ 364 (650)
T KOG1450|consen 348 NETSFEDWSSNLPEVIN 364 (650)
T ss_pred CCccccchhhcchhhhh
Confidence 99999999887766544
No 318
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=20.56 E-value=1.7e+02 Score=38.45 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=51.4
Q ss_pred cccccccChhHHHHHHhhHHHhhcccccceehhccccCCCCccccceehhhhhHHHHHHHHHHHHHhhh
Q psy8107 1065 PKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAIL 1133 (1613)
Q Consensus 1065 Pd~s~L~~~~vW~~A~~QaFfSLslG~G~mitygSY~~~~~ni~rda~~v~~~n~~vSllAgl~IFsil 1133 (1613)
+||+.+ ..+|..|+.-++.++--...+--+++.-.+.+-|.=+.-+...+.|.+.+++.|+...+..
T Consensus 253 ~~~~~~--~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s~ 319 (563)
T TIGR00815 253 LDWELL--PTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGSL 319 (563)
T ss_pred CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCcc
Confidence 445444 4678888888888877777766777777778888889999999999999998887655433
No 319
>KOG2466|consensus
Probab=20.33 E-value=6.1e+02 Score=32.77 Aligned_cols=48 Identities=6% Similarity=0.074 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhcccccceeeeeehhhHHHHHHHHHHHHhccC
Q psy8107 1005 IVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITL 1052 (1613)
Q Consensus 1005 l~l~l~l~w~iv~~~v~kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL 1052 (1613)
-..|.++-|++...+++.+.....++..+....-....+.++++++--
T Consensus 186 e~i~FfIFwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~k 233 (572)
T KOG2466|consen 186 EFIGFFIFWVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKK 233 (572)
T ss_pred HHHHHHHHHHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456788899999999999999888776665555555666666766543
No 320
>KOG1303|consensus
Probab=20.14 E-value=1.4e+03 Score=29.39 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=30.7
Q ss_pred cccchhhHHHHHHHHhhhhHHHHHHHHHHHhhcccC
Q psy8107 921 GGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSS 956 (1613)
Q Consensus 921 ~GvG~~~~li~~li~~YYsVi~aW~L~Y~~~Sf~~~ 956 (1613)
..+++.+.+..+.+++-|.+..|-.|.-++..+...
T Consensus 121 ~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~ 156 (437)
T KOG1303|consen 121 LLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLN 156 (437)
T ss_pred EeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 467888888899999999999999999888887654
No 321
>KOG1286|consensus
Probab=20.02 E-value=4.7e+02 Score=34.54 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=39.1
Q ss_pred cccccceeeeeehhhHHHHHHHHHHHHhccCCC--hhccceeeeccc-cccccChhHHHHHHhhHHHhhcccccceehhc
Q psy8107 1022 KGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG--AGAGLVHMYTPK-VEKLLDPNVWLDAATQVFYSFGLAFGSLIAFG 1098 (1613)
Q Consensus 1022 kGI~~~gKv~~~~~l~P~vlL~iLlir~ltL~G--a~~Gl~~lf~Pd-~s~L~~~~vW~~A~~QaFfSLslG~G~mityg 1098 (1613)
.|+|-...+..+.+++=++++.++.+-|..-.+ ...|-+|.-.|. |..- ..+.+..++..++|+.+ |+=..-+-+
T Consensus 178 ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~-gf~Gv~s~~~~~~fsf~-G~e~va~~a 255 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPF-GFKGVLSGAATAFFSFI-GFELVATTA 255 (554)
T ss_pred cceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCC-CcceeeHHHHHHHHHHh-hHHHHHHHH
Confidence 567765544443444444444444444443333 333433332221 1111 15677899999999998 666665554
Q ss_pred c
Q psy8107 1099 S 1099 (1613)
Q Consensus 1099 S 1099 (1613)
.
T Consensus 256 ~ 256 (554)
T KOG1286|consen 256 E 256 (554)
T ss_pred H
Confidence 4
Done!