RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8107
(1613 letters)
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and
B0AT1 (also called HND); the human genes encoding these
are SLC6A17, SLC6A15, and SLC6A19 respectively, ii)
glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and sarcosine:
SIT1 (also called XTRP3, XT3, IMINO). The human genes
encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20
respectively. Transporters in this subgroup may play a
role in disorders including major depression, Hartnup
disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 633 bits (1636), Expect = 0.0
Identities = 225/386 (58%), Positives = 274/386 (70%), Gaps = 46/386 (11%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+++ML+LEGIPLF +EL IGQ++R GS+GVWNTI P+LGG+GI+SC+V+F VALY
Sbjct: 38 AFLIPYVIMLVLEGIPLFFLELAIGQRLRKGSIGVWNTISPYLGGIGIASCVVSFLVALY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGT-IIPECELSSETAYFWYRTTLDVSPNIE 996
YNVII WCF+YLFNSF LPWSSCPT+ NGT + EC SS T YFWYRTTLD+SP+I+
Sbjct: 98 YNVIIAWCFFYLFNSFQYPLPWSSCPTNGNGTGYVEECAKSSPTQYFWYRTTLDISPSID 157
Query: 997 SPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAG 1056
G WW+ LCLLLAWIIV+ ++KGI+SSG+VVYFT+ FPYIVL IF IRG+TL GAG
Sbjct: 158 ESGGLNWWMTLCLLLAWIIVYLCMIKGIKSSGKVVYFTATFPYIVLIIFLIRGLTLKGAG 217
Query: 1057 AGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSI 1116
GL HM+TPK EKLLDP VWLDAATQ+F+S GL FGSLIAF SYN P NNC RD ++VS+
Sbjct: 218 DGLKHMFTPKFEKLLDPQVWLDAATQIFFSLGLGFGSLIAFSSYNPPKNNCHRDAVLVSL 277
Query: 1117 CNALTAIYASVVVFAILGFKAMSNAAE-----------GTGLAFI--------------- 1150
N T+I+AS+VVF++LGFKA + L
Sbjct: 278 INCFTSIFASIVVFSVLGFKATTRYDRCVDSNILILVINFLLNSTEDYVDNYTAINNVTL 337
Query: 1151 -------------------AAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQ 1191
A EGTGLAFIVFT+AIV+ PGAPFWS++FF+MLL+LGLGS
Sbjct: 338 TENQTLGLTNCSLEDELDEAVEGTGLAFIVFTEAIVKFPGAPFWSVLFFLMLLTLGLGSM 397
Query: 1192 IGILEGVLCTIFDIEIFKRIRKPILT 1217
G LEGVL +FD +I ++ K LT
Sbjct: 398 FGTLEGVLTPLFDSKILPKVPKEYLT 423
Score = 187 bits (477), Expect = 5e-50
Identities = 63/135 (46%), Positives = 94/135 (69%), Gaps = 11/135 (8%)
Query: 769 HLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTN 828
+L G+VCL+ FL+GLIFT +G YW+++FDS++GT+ L++IAL EM+AV ++YG ++F +
Sbjct: 421 YLTGLVCLVCFLIGLIFTQRSGNYWVQMFDSYSGTLPLLIIALFEMIAVSYVYGLDRFED 480
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRA---------- 878
DI MTG +PGWYW+ITWR++ P M ILV+SI+ K P+YSAWN
Sbjct: 481 DIEYMTGKRPGWYWKITWRYVSPLAMLVILVASIVQLVTKPPTYSAWNAELASTESLPYP 540
Query: 879 -FLIPFMVMLILEGI 892
+ + +++LIL I
Sbjct: 541 GWGLAVIILLILLSI 555
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 444 bits (1145), Expect = e-141
Identities = 164/341 (48%), Positives = 232/341 (68%), Gaps = 7/341 (2%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+++ LI GIPLF +EL +GQ R G++GVW I P G+G +S ++ F++ +Y
Sbjct: 38 AFLIPYLIFLITAGIPLFFLELALGQYTREGAIGVWRKICPLFKGIGYASMVIVFYIGIY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIES 997
YNVII W YYLF+SF++ LPW+SC N P CE +S FW R L +S IE
Sbjct: 98 YNVIIAWALYYLFSSFTTELPWASCNNSWNT---PRCEKTSPVEEFWERKVLKLSDGIED 154
Query: 998 PGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGA 1057
G +W + LCLL+AW++V+F + KG++SSG+VVYFT+ FPY+VL + +RG+TLPGA
Sbjct: 155 LGGLRWPLTLCLLVAWVVVYFCIWKGVKSSGKVVYFTATFPYVVLLVLLVRGVTLPGAAD 214
Query: 1058 GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSIC 1117
G+ TP KLLDP VW+DAATQ+F+S G+ FG LIAF SYN+ +NNC RD ++VS
Sbjct: 215 GIDFYLTPDWSKLLDPQVWIDAATQIFFSLGIGFGGLIAFASYNKFHNNCYRDALIVSFI 274
Query: 1118 NALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSI 1177
N+ T+ A V+F++LGF A +G ++ +A G GLAFI + +A+ LP +PFWS+
Sbjct: 275 NSATSFLAGFVIFSVLGFMA---QEQGVPISEVAESGPGLAFIAYPEAVTMLPLSPFWSV 331
Query: 1178 IFFMMLLSLGLGSQIGILEGVLCTIFD-IEIFKRIRKPILT 1217
+FF+ML++LGL SQ G +EG++ + D I R R+ + T
Sbjct: 332 LFFLMLITLGLDSQFGGVEGIITALVDEFPILLRKRRELFT 372
Score = 123 bits (311), Expect = 4e-29
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 8/133 (6%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTND 829
+VC+ISFL+GLI T G Y LFD +A + GL+ + E +AV ++YG ++F +D
Sbjct: 371 FTLIVCVISFLIGLILVTEGGIYVFTLFDYYAASFGLLFVVFFECIAVAWVYGLDRFYDD 430
Query: 830 IYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSA-----WNRAFLIPFM 884
I EM G++PG +W++ W+F+ P I+ + + SI+ K +Y+ W A
Sbjct: 431 IKEMLGFRPGLFWRLCWKFVSPLILLFLFIFSIV--QYKPLTYNNYVYPNWANALGWLMA 488
Query: 885 VMLILEGIPLFLI 897
+ +L IPL+ I
Sbjct: 489 LSSMLC-IPLYSI 500
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 576
Score = 423 bits (1090), Expect = e-132
Identities = 177/391 (45%), Positives = 252/391 (64%), Gaps = 51/391 (13%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+ + L+ EGIPLF +EL IGQ++R GS+GVW TI P+LGGVG+ V+F V+LY
Sbjct: 39 AFLIPYFIALVFEGIPLFHLELAIGQRLRKGSIGVWTTISPYLGGVGLGCVTVSFLVSLY 98
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGT-IIPECELSSETAYFWYRTTLDVSPNIE 996
YN I+ W +Y NSF LPWSSCP D N T + EC+ S+ +YFWYR TL+++P+I
Sbjct: 99 YNTILAWVLWYFLNSFQHPLPWSSCPLDLNRTGFVEECQGSTAVSYFWYRQTLNITPDIN 158
Query: 997 SPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAG 1056
GS +WW++LCL W IV+ V++GI+++G+V+YFT++FPY+VLTIF IRG+TLPGA
Sbjct: 159 DSGSIQWWLLLCLAACWAIVYLCVIRGIETTGKVIYFTALFPYLVLTIFLIRGLTLPGAT 218
Query: 1057 AGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSI 1116
GL++++TP + L +P VWLDAATQ+F+S LAFG IAF SYN P N+C +D + +++
Sbjct: 219 EGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNPPRNDCEKDAVTIAL 278
Query: 1117 CNALTAIYASVVVFAILGFKAMS------------------------------------N 1140
N++T++YAS+ VF++LGFKA + N
Sbjct: 279 VNSMTSLYASIPVFSVLGFKATNDYEHCLDRNILSLINEFDFPEQSISRDNYPSVLMHLN 338
Query: 1141 AAEGTGLAFI-------------AAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLG 1187
A +A + +A G GLAFIVFT+A++ +PGA W+++FF ML +LG
Sbjct: 339 ATWPERVAQLPLKACLLEDFLDKSASGPGLAFIVFTEAVLHMPGAQVWAVLFFGMLFTLG 398
Query: 1188 LGSQIGILEGVLCTIFDIEIFKR-IRKPILT 1217
L S G +EGV+ + D+ + R + K LT
Sbjct: 399 LSSMFGNVEGVITPLLDVGVLPRWVPKEALT 429
Score = 136 bits (343), Expect = 6e-33
Identities = 51/107 (47%), Positives = 75/107 (70%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTND 829
L G+VCL+ FL L FT +G YWL++FDSFA ++ L++IA E++ V+++YG ++F +D
Sbjct: 428 LTGLVCLVCFLSALCFTLQSGNYWLEIFDSFAASLNLLVIAFFEVVGVVYVYGIKRFCDD 487
Query: 830 IYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWN 876
I MTG +P YW++TWR + P ++ I V+ II F K PSY AWN
Sbjct: 488 IEWMTGRRPSLYWRLTWRVVSPLLLLTIFVAYIILLFQKPPSYKAWN 534
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters GABA
and glycine. NTTs are widely expressed in the mammalian
brain, and are involved in regulating neurotransmitter
signaling and homeostasis, through facilitating the
uptake of released neurotransmitters from the
extracellular space into neurons and glial cells. NTTs
are the target of a range of therapeutic drugs for the
treatment of psychiatric diseases, such as major
depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the functional
Fusobacterium nucleatum tyrosine transporter Tyt1.
Length = 417
Score = 406 bits (1047), Expect = e-128
Identities = 143/337 (42%), Positives = 199/337 (59%), Gaps = 52/337 (15%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+++ML+L GIPLF +EL +GQ G +G + I P GVG + +++F VA+Y
Sbjct: 37 AFLIPYLIMLLLVGIPLFFLELALGQYTSRGPVGAFWRICPLFKGVGYAQVVISFLVAIY 96
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIES 997
YNVII W YYLF SF
Sbjct: 97 YNVIIAWTLYYLFASF-------------------------------------------- 112
Query: 998 PGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGA 1057
W + LCLLLAWI+V+ + KG++SSG+VVYFT+ FPY+VL I IRG+TLPGAG
Sbjct: 113 ---INWELALCLLLAWILVYLCIFKGVKSSGKVVYFTATFPYVVLFILLIRGVTLPGAGD 169
Query: 1058 GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSIC 1117
G+++ TP KLLDP VW AATQ+F+S + FG LI + SYN+ +NN RD ++VSI
Sbjct: 170 GILYFLTPDWSKLLDPKVWYAAATQIFFSLSIGFGGLITYASYNKFDNNIYRDALIVSIL 229
Query: 1118 NALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSI 1177
N LT++ A V+F++LGF +++ G +A + G GLAF+V+ +AI ++P WS+
Sbjct: 230 NTLTSLLAGFVIFSVLGF--LAHEL-GVPVADVVKGGPGLAFVVYPEAIAKMPVPQLWSV 286
Query: 1178 IFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKP 1214
+FF ML LGL SQ I+E ++ I D F ++RK
Sbjct: 287 LFFFMLFLLGLDSQFAIVETIVTAIVD--EFPKLRKR 321
Score = 126 bits (320), Expect = 9e-31
Identities = 38/94 (40%), Positives = 59/94 (62%)
Query: 769 HLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTN 828
+ VC++ FL+GL + T G Y L L D +A T L+++AL E++A+ +IYG ++F
Sbjct: 324 LVTLGVCVVGFLLGLPYVTQGGIYILDLLDYYAATFSLLVLALFELIAISWIYGVDRFLR 383
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSI 862
DI M G P YW+I W+F+ P I+ IL+ S+
Sbjct: 384 DIEFMLGIPPSIYWRICWKFITPVILLVILIFSL 417
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding domain
of NTT4 (also called XT1) and SBAT1 (also called B0AT2,
v7-3, NTT7-3); both these proteins can transport neutral
amino acids. Human SBAT1 is encoded by the SLC6A15 gene,
a susceptibility gene for major depression. SBAT1 is
expressed in brain, and may have a role in transporting
neurotransmitter precursors into neurons. Human NTT4 is
encoded by the SLC6A17 gene. NTT4 is specifically
expressed in the nervous system, in synaptic vesicles of
glutamatergic and GABAergic neurons, and may play an
important role in synaptic transmission. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 530
Score = 406 bits (1046), Expect = e-127
Identities = 175/354 (49%), Positives = 242/354 (68%), Gaps = 17/354 (4%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
A+L+P++++LI+ GIPLF +EL +GQ++R GS+GVWN I P LGG+G +SC+V FVALY
Sbjct: 38 AYLVPYLILLIVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCLFVALY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGT---IIPECELSSETAYFWYRTTLDVSPN 994
YNVII W +Y SF LPW CP N + + PECE SS T Y+WYR L++S +
Sbjct: 98 YNVIIGWSLFYFSQSFQYPLPWDQCPLVKNASHTFVEPECEKSSATTYYWYREALNISSS 157
Query: 995 IESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG 1054
I G W + +CLL AW++V ++KGIQSSG+++YF+S+FPY+VL F +RG+ L G
Sbjct: 158 ISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLACFLVRGLLLNG 217
Query: 1055 AGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMV 1114
+ G+ HM+TPK+E +L+P VW +AATQVF++ GL FG +IAF SYN+ +NNC D ++V
Sbjct: 218 SVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCHFDAVLV 277
Query: 1115 SICNALTAIYASVVVFAILGFKAMS---NAAEGTGLAFI--------AAEGTGLAFIVFT 1163
S N T++ A++VVFA+LGFK GL A +GTGLAFI FT
Sbjct: 278 SFINFFTSVLATLVVFAVLGFKIQKVKEEEFSALGLDSCLIEDELDKAVQGTGLAFIAFT 337
Query: 1164 QAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPILT 1217
+A+ P +PFWS++FF+ML++LGLGS G +EG+ I D FK +RK ILT
Sbjct: 338 EAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGITTPIVD--TFK-VRKEILT 388
Score = 104 bits (260), Expect = 1e-22
Identities = 37/103 (35%), Positives = 68/103 (66%)
Query: 773 VVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYE 832
+ CL +FL+GLIF +G Y++ +FD ++ T+ L+++ ++E +AV +IYG +KF D+ +
Sbjct: 390 ICCLFAFLIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVAWIYGIKKFMEDLKD 449
Query: 833 MTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAW 875
M G++P Y+ W+++ P + +L +SI+ L P Y+AW
Sbjct: 450 MLGFRPSRYYYYMWKYISPLCLLVLLTASIVQMGLSPPGYNAW 492
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and BGT1,
which transport gamma-aminobutyric acid (GABA), and human
CT1 which transports creatine. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 543
Score = 397 bits (1023), Expect = e-123
Identities = 150/360 (41%), Positives = 222/360 (61%), Gaps = 24/360 (6%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+ + L+L GIP+F +E+ +GQ G + W I P G+G +S ++ F++ +Y
Sbjct: 38 AFLIPYFIFLVLCGIPIFFLEVALGQYTSQGGITAWK-ICPLFKGIGYASAVIVFWLNIY 96
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCP----TDH--------NGTIIPECELSSETAY--- 982
Y VI+ W +YLFNSF+S LPW++C T+ N + + + ++ +
Sbjct: 97 YIVILAWALFYLFNSFTSELPWTTCDNWWNTECCVETYSNNNLSNLTKNCSNNTNSTSPV 156
Query: 983 --FWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYI 1040
FW R L +S IE GS +W + LCLLLAWII +F + KG++S+G+VVYFT+ FPY+
Sbjct: 157 EEFWERRVLGISDGIEDIGSIRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYV 216
Query: 1041 VLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSY 1100
+L I IRG+TLPGA G+ P + KLLDP VW+DA TQ+F+S+G+ GSL A GSY
Sbjct: 217 MLIILLIRGVTLPGASDGIYFYLKPDLTKLLDPQVWIDAGTQIFFSYGIGLGSLTALGSY 276
Query: 1101 NQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFI 1160
N+ NNNC +D I++ N+ T+ +A +F+ILGF M+ G ++ +A G GLAFI
Sbjct: 277 NKFNNNCYKDSIILCFLNSGTSFFAGFAIFSILGF--MAQEQ-GVPISEVAESGPGLAFI 333
Query: 1161 VFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDI---EIFKRIRKPILT 1217
+ +A+ LP W+++FF+MLL LGL SQ +EG + I D+ + R R+ I
Sbjct: 334 AYPRAVSLLPLPQLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDLYPNVLRLRYRREIFV 393
Score = 93.8 bits (234), Expect = 2e-19
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 10/135 (7%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGT-IGLVLIALIEMLAVMFIYGHEKFTN 828
V +VCL+ FL+GL T G Y +LFD +A + I L+ +A E +A+ ++YG ++F +
Sbjct: 392 FVAIVCLVCFLIGLPMVTEGGIYVFQLFDYYAASGICLLWLAFFECIAISWVYGADRFYD 451
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIIC----RFLKKPSYSAWNRAF--LIP 882
+I +M GY+PG +W+ W+FL PAI I V S++ + Y W A +
Sbjct: 452 NIEDMIGYRPGPWWKYCWKFLTPAICLGIFVFSLVKYTPLTYGNTYVYPWWAEAIGWFLA 511
Query: 883 FMVMLILEGIPLFLI 897
ML IP + I
Sbjct: 512 LSSMLC---IPGYAI 523
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins implicates
B0AT1 in more complex processes such as glomerular
structure, exocytosis, and blood pressure control. The
autosomal recessive disorder, Hartnup disorder, is caused
by mutations in B0AT1. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 581
Score = 398 bits (1024), Expect = e-123
Identities = 174/391 (44%), Positives = 243/391 (62%), Gaps = 51/391 (13%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AF+IPF+++L+ EGIPL +E IGQ++R GS+GVW+TIHP L GVGI+S V+F V+LY
Sbjct: 38 AFMIPFLILLVFEGIPLLHLEFAIGQRLRKGSVGVWSTIHPTLKGVGIASMCVSFLVSLY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGT-IIPECELSSETAYFWYRTTLDVSPNIE 996
YN II W +Y FNSF LPWS CP + N T IPEC SS YFWYR TL+ S +I+
Sbjct: 98 YNTIIAWVMWYFFNSFQEPLPWSQCPLNENRTGYIPECAKSSPVDYFWYRETLNTSTSID 157
Query: 997 SPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAG 1056
G +WW+VLCL AW +++ ++GI+++G+ VY TS PY+VLTIF IRG+TL G+
Sbjct: 158 DSGGIQWWMVLCLACAWGVLYVCTIRGIETTGKAVYVTSTLPYLVLTIFLIRGLTLKGSV 217
Query: 1057 AGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSI 1116
G+ ++TP + +L +P WLDA QVFYSF LAFG LI+F SYN +NNC +D +++S+
Sbjct: 218 NGIKFLFTPDINELANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHNNCEKDAVIISV 277
Query: 1117 CNALTAIYASVVVFAILGFKA--------------------------------------- 1137
N T+IYA+ V+++I+GF+A
Sbjct: 278 INGFTSIYAATVIYSIIGFRATERFDDCFDGNILTLINAFDLPEGNITQDNYQDMQQSLN 337
Query: 1138 MSNAAEGTGLAFI----------AAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLG 1187
++ + L+ EGTGLAFIVFT+AI ++P +P WS++FF+ML LG
Sbjct: 338 STDPDIISSLSLQTCDLNNFLSEGVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLG 397
Query: 1188 LGSQIGILEGVLCTIFDIEIF-KRIRKPILT 1217
L S G +EGVL + D+++ K K I+T
Sbjct: 398 LSSMFGNMEGVLVPLQDLKVIPKSWPKEIIT 428
Score = 128 bits (324), Expect = 2e-30
Identities = 57/140 (40%), Positives = 87/140 (62%), Gaps = 12/140 (8%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTND 829
+ G++CL+SFL+GLIF G+G YWL LFDSFAG+I L++IA EM +V+++YG ++F D
Sbjct: 427 ITGLICLVSFLIGLIFVLGSGNYWLALFDSFAGSIPLLIIAFCEMFSVVYVYGIDRFNKD 486
Query: 830 IYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWN---RAFLIP---- 882
I M G+KP +WQ TWR + P IM I + + + ++ YSAW+ F
Sbjct: 487 IEFMIGHKPNIFWQATWRVISPLIMLVIFLFYFVVKVSQELFYSAWDPEYEEFPKSQKIS 546
Query: 883 -----FMVMLILEGIPLFLI 897
+++++IL G+P I
Sbjct: 547 YPTWIYVIIVILAGVPSLAI 566
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such as
proline, pipecolate, MeAIB, and sarcosine. It has weak
affinity for neutral amino acids such as phenylalanine.
Human SIT1 is encoded by the SLC6A20 gene. SIT1 is
expressed in brain, kidney, small intestine, thymus,
spleen, ovary, and lung. SLC6A20 is a candidate gene for
the rare disorder iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 576
Score = 379 bits (976), Expect = e-116
Identities = 174/397 (43%), Positives = 246/397 (61%), Gaps = 55/397 (13%)
Query: 879 FLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYY 938
FLIP+++MLILEG+PL +EL +GQ+MR GS+G W +I P+LGGVG++S +V+FF+++YY
Sbjct: 42 FLIPYLIMLILEGMPLLYLELAVGQRMRQGSIGAWKSISPYLGGVGVASVVVSFFLSMYY 101
Query: 939 NVIITWCFYYLFNSFSSSLPWSSCPTDHNGT-IIPECELSSETAYFWYRTTLDVSPNIES 997
NVI W F+YLF+SF LPWS CP + N T ECE +S T YFWYR TL++SP+IE
Sbjct: 102 NVINAWAFWYLFHSFQDPLPWSVCPLNSNRTGYTEECEKASPTQYFWYRETLNISPSIEE 161
Query: 998 PGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGA 1057
G +W LCL+LAW++V+ +++G +S+G+VVY T+ PY+VL I+ IRG+TL GA
Sbjct: 162 SGGIQWEQALCLILAWLVVYLCILRGTESTGKVVYVTATLPYLVLIIYLIRGLTLHGAAN 221
Query: 1058 GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSIC 1117
GL +M+TPK+E+L +P W++AATQ+F+S GL FGSLIAF SYN+P+NNC R I+VS+
Sbjct: 222 GLKYMFTPKLEQLANPKTWINAATQIFFSLGLGFGSLIAFASYNEPSNNCERHAIIVSLI 281
Query: 1118 NALT---------AIYASVVVF--------AIL----------GFKAMSNAAEGTGL--- 1147
N+ T +IY F IL G MSN +
Sbjct: 282 NSGTSIFASIVTFSIYGFKATFNYENCLKKVILLLTNTFDLEEGSITMSNLEDMKKYLNA 341
Query: 1148 AF---------------------IAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSL 1186
A+ A +GTGLAFIV+++AI + + WS+++F MLL L
Sbjct: 342 AYPQEYAQIAPQLKNCSLEKELDTAVQGTGLAFIVYSEAIKNMEVSQLWSVLYFFMLLML 401
Query: 1187 GLGSQIGILEGVLCTIFDIEIFKRIRKPILTEALKGM 1223
G+GS +G +L + D K I + EA+ G+
Sbjct: 402 GIGSMLGNTAAILTPLTD---SKIISSHLPKEAISGL 435
Score = 108 bits (270), Expect = 7e-24
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 772 GVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIY 831
G+VC I+ ++GL+FT AG YW +F+ +A T+ L+LI L+E +AV ++YG +F D+
Sbjct: 434 GLVCFINCIIGLVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLRRFEKDLE 493
Query: 832 EMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLK-KPSYSAWN 876
MTG+KP WYW+I W F P ++ + + + L Y AW+
Sbjct: 494 AMTGHKPSWYWKIMWAFTSPLLIISLFIFYLTDYILTGTLQYQAWD 539
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also called
B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent
transporter for large neutral amino acids, including
leucine, isoleucine, valine, proline and methionine.
Human SBAT1 is encoded by the SLC6A15 gene, a
susceptibility gene for major depression. SBAT1 is
expressed in brain, and may have a role in transporting
neurotransmitter precursors into neurons. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 580
Score = 375 bits (964), Expect = e-115
Identities = 173/404 (42%), Positives = 243/404 (60%), Gaps = 67/404 (16%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
A+L+P++++L++ GIPLF +EL +GQ++R GS+GVWN I P LGG+G +SC+V FFVALY
Sbjct: 38 AYLVPYLILLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCFFVALY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGT---IIPECELSSETAYFWYRTTLDVSPN 994
YNVII W +Y SF LPW CP N + + PECE SS T Y+WYR L++S +
Sbjct: 98 YNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEKSSATTYYWYREALNISSS 157
Query: 995 IESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG 1054
I G W + +CLL AW++V ++KGIQSSG+++YF+S+FPY+VL F IR + L G
Sbjct: 158 ISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFLIRALLLNG 217
Query: 1055 AGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMV 1114
+ G+ HM+TPK+E +L+P VW +AATQVF++ GL FG +IAF SYN+ +NNC D ++V
Sbjct: 218 SVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCHFDAVLV 277
Query: 1115 SICNALTAIYASVVVFA--------------------ILGFKAMSNAAEGTGLAFI---- 1150
S N T++ A++VVFA I+ M N ++ I
Sbjct: 278 SFINFFTSVLATLVVFAVLGFKANVINEKCIIQNSEKIIKLLKMGNLSQDIIPHHINFSS 337
Query: 1151 -------------------------------------AAEGTGLAFIVFTQAIVELPGAP 1173
A +GTGLAFI FT+A+ P +P
Sbjct: 338 ITAEDYNLVYDIIQKVKEEEFPALGLKSCQIEDELNKAVQGTGLAFIAFTEAMTHFPASP 397
Query: 1174 FWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPILT 1217
FWS++FF+ML++LGLGS G +EG++ I D FK +RK ILT
Sbjct: 398 FWSVMFFLMLVNLGLGSMFGTIEGIITPIVD--TFK-VRKEILT 438
Score = 103 bits (257), Expect = 3e-22
Identities = 37/107 (34%), Positives = 70/107 (65%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTND 829
L + CL++F +GLIF +G Y++ +FD ++ T+ L+++ ++E +AV F+YG +KF D
Sbjct: 437 LTVICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGIDKFMED 496
Query: 830 IYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWN 876
+ +M G+ P Y+ W+++ P ++ +LV+S++ L P Y+AW
Sbjct: 497 LKDMLGFTPNRYYYYMWKYISPLVLLSLLVASVVQMGLSPPGYNAWI 543
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 369 bits (949), Expect = e-113
Identities = 159/355 (44%), Positives = 219/355 (61%), Gaps = 27/355 (7%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+++MLI G+PLF +EL +GQ R G + VW I P GVG + C++ F+VA Y
Sbjct: 38 AFLIPYLLMLIFGGLPLFYMELALGQYHRSGCITVWRKICPIFKGVGYAICIIAFYVAFY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSC-----------------PTDHNGTIIPECELSSET 980
YN II W YYLF+SF+S LPW+SC + NGT L S
Sbjct: 98 YNTIIAWALYYLFSSFTSELPWTSCNNPWNTPNCTDVSNRNNSSSSNGTWT----LHSPA 153
Query: 981 AYFWYRTTLDV--SPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFP 1038
F+ R L++ S I+ G PKW + LCL +IIV+F + KG++SSG+VV+ T+ P
Sbjct: 154 EEFFERKVLELQKSEGIDDLGGPKWQLALCLFAVFIIVYFSLWKGVKSSGKVVWVTATMP 213
Query: 1039 YIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFG 1098
Y+VL+I IRG+TLPGA G+ + TP KL DP VW+DAATQ+F+S G FG L+A
Sbjct: 214 YVVLSILLIRGLTLPGASDGIKYYLTPNWSKLKDPKVWIDAATQIFFSLGPGFGVLLALS 273
Query: 1099 SYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLA 1158
SYN+ +NNC RD ++ S N LT+ ++ V+F++LG+ A + +A EG GL
Sbjct: 274 SYNKFHNNCYRDALITSSINCLTSFFSGFVIFSVLGYMAHKQ---NVDIEVVATEGPGLV 330
Query: 1159 FIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRK 1213
FIV+ +AI LPG+ FW+IIFF+ML++LGL S G LE V+ + D E + K
Sbjct: 331 FIVYPEAIATLPGSTFWAIIFFLMLITLGLDSTFGGLEAVITGLCD-EFPPVLGK 384
Score = 106 bits (267), Expect = 2e-23
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 769 HLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTN 828
V V +I FL+ L T G Y + L D +A ++ + +E +AV + YG ++F++
Sbjct: 388 LFVLGVVIICFLLALPTVTYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYGVDRFSD 447
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWN 876
DI EM G++PG YW++ W+F+ P + I++ S++ + Y +
Sbjct: 448 DIEEMLGFRPGLYWRVCWKFISPIFLLFIVIFSLV--SYEPLQYQDYV 493
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 362 bits (931), Expect = e-110
Identities = 145/343 (42%), Positives = 202/343 (58%), Gaps = 20/343 (5%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+ +ML GIPLF +EL +GQ LG L VW P G+G LV+ V +Y
Sbjct: 38 AFLIPYFIMLAFCGIPLFFMELSLGQYGSLGPLTVWKCC-PIFKGIGYGMLLVSGLVCIY 96
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSC--------------PTDHNGTIIPECELSSETAYF 983
YNVII W +YLF SF+S LPW C + + S + +
Sbjct: 97 YNVIIAWTLFYLFASFTSVLPWEHCGNWWNTESCLEHRVKDNMGALPVNLTRTVSPSEEY 156
Query: 984 WYRTTL--DVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIV 1041
W R L S I PG +W + LCLLLAW+IVFF + KG++SSG+VVYFT+ FPYI+
Sbjct: 157 WNRRVLGIQGSSGIGDPGEVRWELALCLLLAWVIVFFCLFKGVKSSGKVVYFTATFPYII 216
Query: 1042 LTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYN 1101
L + +RG+TL GA G+ TP +L VW DAA+Q+FYS G+ FG L+ SYN
Sbjct: 217 LIVLLVRGVTLEGALKGIQFYLTPDFHRLASSQVWYDAASQIFYSLGIGFGGLLTMASYN 276
Query: 1102 QPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIV 1161
+ NNN RD +++++ N +T+++A +F++LG A G + +A G GLAF+
Sbjct: 277 KFNNNIYRDTLIITLGNCITSVFAGFAIFSVLGHMAHE---LGVPVKDVADAGPGLAFVA 333
Query: 1162 FTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204
+ +A+ LP +PFWSI+FF MLL+LGL SQ +LE ++ + D
Sbjct: 334 YPEALTLLPVSPFWSILFFFMLLTLGLDSQFAMLETIVTAVTD 376
Score = 105 bits (263), Expect = 4e-23
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 769 HLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTN 828
+G++C+ +L+GL+ T G YWL L D ++ + GL+++AL LA+ ++YG ++F
Sbjct: 388 WFLGLICVGMYLLGLLLVTDGGMYWLTLMDWYSASFGLMVLALFMCLAISWVYGIQRFCR 447
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPS---YSAWNRAFLIPFMV 885
DI M G++P Y++ W F+ PA++ ILV SI+ + Y W I M
Sbjct: 448 DIKMMIGFEPNLYFKACWMFISPALLLFILVYSIVKYQPSEYGSYRYPPWAELLGI-LMG 506
Query: 886 MLILEGIPLFLIELGIGQKMRLG 908
+L IP+ I + ++ L
Sbjct: 507 LLSCLMIPIGAIVAILREEGSLW 529
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic and
GABAergic neurons. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 589
Score = 353 bits (908), Expect = e-107
Identities = 148/263 (56%), Positives = 195/263 (74%), Gaps = 3/263 (1%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
A+L+P++V+LI+ GIPLF +EL +GQ++R GS+GVWN I P LGG+G +SCLV FFV LY
Sbjct: 38 AYLVPYLVLLIIIGIPLFFLELAVGQRIRRGSIGVWNYICPRLGGIGYASCLVCFFVGLY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTII---PECELSSETAYFWYRTTLDVSPN 994
YNVII W +Y F SF LPWS CP NG++ ECE SS T YFWYR LD+S +
Sbjct: 98 YNVIIGWSIFYFFKSFQYPLPWSECPIVRNGSVAVVEAECEKSSATTYFWYREALDISNS 157
Query: 995 IESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG 1054
I G W + LCLL+AW IV ++KGIQSSG+V+YF+S+FPY+VL F +RG+ L G
Sbjct: 158 ISESGGLNWKMTLCLLVAWSIVGLAMIKGIQSSGKVMYFSSLFPYVVLVCFLVRGLLLRG 217
Query: 1055 AGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMV 1114
A G++HM+TPK++K+LDP VW +AATQVF++ GL FG +IAF SYN+ +NNC D +V
Sbjct: 218 AVDGILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALV 277
Query: 1115 SICNALTAIYASVVVFAILGFKA 1137
S N T++ A++VVFA+LGFKA
Sbjct: 278 SFINFFTSVLATLVVFAVLGFKA 300
Score = 95.4 bits (237), Expect = 8e-20
Identities = 39/103 (37%), Positives = 69/103 (66%)
Query: 775 CLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMT 834
C+ +FLVGLIF +G Y++ +FD ++ T+ L ++ ++E +AV +IYG +KF ++ EM
Sbjct: 442 CIFAFLVGLIFVQRSGNYFVTMFDDYSATLPLTIVVILENIAVAWIYGTKKFMQELTEML 501
Query: 835 GYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNR 877
G++P ++ TW+++ P M+ ++ +SII + P YSAW R
Sbjct: 502 GFRPYSFYFYTWKYVSPICMAVLMTASIIQLGVSPPGYSAWIR 544
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding
domain. Human NTT5 is encoded by the SLC6A16 gene. NTT5
is expressed in testis, pancreas, and prostate; its
expression is predominantly intracellular, indicative of
a vesicular location. Its substrates are unknown. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 543
Score = 327 bits (840), Expect = 2e-98
Identities = 139/380 (36%), Positives = 208/380 (54%), Gaps = 35/380 (9%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
+FLI + VML L GIPL +E+ +GQ+++ GS+ VW I PW GGVG SS L F VALY
Sbjct: 38 SFLIAYFVMLFLVGIPLLFLEMAVGQRLQQGSIRVWKAISPWFGGVGYSSVLACFLVALY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIES 997
YNV+ +W +YL +SF LPW CP N + PEC ++ + YFWY+ TL S IE
Sbjct: 98 YNVVNSWALFYLGHSFQFPLPWEQCPLVKNSSD-PECARTTPSGYFWYQKTLKASDRIED 156
Query: 998 PGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGA 1057
GS + L L +AW +V+ +++G++S+G+ + F + PY++L IR + L GA
Sbjct: 157 GGSLVGHLALSLFVAWCLVYVTMIRGLKSTGKSIIFLVLLPYVILLCLLIRSLFLEGAFF 216
Query: 1058 GLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSIC 1117
GL+ + KV L + ++W A QV +S GL FG+LI + SY NNC+ D +V++
Sbjct: 217 GLLWLLVAKVSSLANLSIWRVAGGQVLFSLGLGFGTLITYASYMPRKNNCLTDAFVVALV 276
Query: 1118 NALTAIYASVVVFAILGF-----------KAMSNAAEGTGLAFIA--------------- 1151
N LT++ A+ + FA++GF K + N L A
Sbjct: 277 NLLTSLIATPIFFAVMGFWATVSTHRCCEKNVENLLMLGVLPPEAKPPADLSLDPASIYL 336
Query: 1152 -------AEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204
EG G AF+ F++AI PG+ FW+I+FF+ LL GL + GI++G+ + D
Sbjct: 337 LWLFNLPMEGPGFAFLAFSEAISLAPGSAFWAIVFFLALLLAGLSTMFGIMQGIYTPLQD 396
Query: 1205 -IEIFKRIRKPILTEALKGM 1223
F++ K + G+
Sbjct: 397 TFSFFRKHPKLLTVLVCVGL 416
Score = 65.9 bits (161), Expect = 1e-10
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 759 LTDPHCDEHLHLVGV-VCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAV 817
T +H L+ V VC+ FL GL+FT +G Y+ L D + + ++ I + E +A+
Sbjct: 396 DTFSFFRKHPKLLTVLVCVGLFLGGLVFTQPSGSYFRSLLDDYLVPLPIIFIVVFENIAL 455
Query: 818 MFIYGHEKFTNDIYEMTGYKP---GWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSA 874
+ YG ++F D+ + G W+ W +L P ++ + + ++I +++ P+Y A
Sbjct: 456 AWAYGAKRFLADLEFLLGGPISSIVWWL---WSYLSPVVLLGLFLWTLIQLYVQPPTYLA 512
Query: 875 WN 876
W+
Sbjct: 513 WD 514
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin transporter
SERT , and the dopamine transporter DAT1. These latter
may play a role in diseases or disorders including
depression, anxiety disorders, and attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. They belongs to the solute
carrier 6 (SLC6) transporter family. Members of this
subgroup are uncharacterized.
Length = 552
Score = 327 bits (839), Expect = 4e-98
Identities = 142/369 (38%), Positives = 209/369 (56%), Gaps = 39/369 (10%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+ +ML++ GIPLF +EL +GQ R G++ W I P G+G + L+ F+V +
Sbjct: 38 AFLIPYGIMLVVGGIPLFYMELALGQYYRKGAITSWGRICPLFKGIGYAVVLIAFYVDFF 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPEC-------ELSSETAYFW------ 984
YNVII W YY F SF+ +LPW+SC N P C + +
Sbjct: 98 YNVIIAWSLYYFFASFTFNLPWTSCNNSWN---TPNCYEPHWSEDGTVPCRSANQSFSAT 154
Query: 985 -------------------YRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQ 1025
L VS + G+ +W I+LCL ++I +F + KGI
Sbjct: 155 NISAAEENFTSAALEYFERGVLELHVSRGVTDLGNIRWQILLCLFAVYLICYFSLWKGIH 214
Query: 1026 SSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFY 1085
+SG+VV+FT++FPY+VL I IRG+TLPG+ G+ + P E L VW+DAATQVF+
Sbjct: 215 TSGKVVWFTALFPYVVLFILLIRGVTLPGSQNGIEYYLRPNFEALKSAEVWVDAATQVFF 274
Query: 1086 SFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGT 1145
S G FG L+A+ SYN+ +NN RD ++ S N LT+ + V+F++LG+ A G
Sbjct: 275 SLGPGFGVLLAYASYNKFHNNVYRDALVTSSINCLTSFLSGFVIFSVLGYMACR---SGK 331
Query: 1146 GLAFIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD- 1204
+ +A EG GL F+V+ +A+ +PG+ FWS++FF+ML++LGL S G E ++ + D
Sbjct: 332 PIEDVATEGPGLVFVVYPEALSTMPGSTFWSLLFFLMLMTLGLDSSFGGSEAIITALSDE 391
Query: 1205 IEIFKRIRK 1213
I KR R+
Sbjct: 392 FPIIKRHRE 400
Score = 84.1 bits (208), Expect = 2e-16
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 773 VVCLISF--LVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDI 830
V CL +F ++GL T G Y+ L D +A +++ L E +AV +IYG ++F DI
Sbjct: 403 VGCLFAFYFVIGLAMCTQGGIYFFHLLDRYAAGYSILIAVLFEAVAVSWIYGLDRFCQDI 462
Query: 831 YEMTGYKPGWYWQITWRFLGPAIMSCILVSSII 863
EM G++PG YW+I W+F+ P + + +I
Sbjct: 463 KEMLGFRPGIYWKICWKFIAPIFLLFNITYGLI 495
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+ ion
is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 326 bits (837), Expect = 5e-98
Identities = 142/341 (41%), Positives = 203/341 (59%), Gaps = 18/341 (5%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+ +M I GIPLF +EL +GQ R G + +W I P G+G + C++ +VA Y
Sbjct: 38 AFLIPYTLMAIFGGIPLFYMELALGQYHRTGCISIWRKICPIFKGIGYAICIIALYVASY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTD------------HNGTIIPECELSSETAYFWY 985
YN II W YYL +SF+++LPW+SC N T +E F+
Sbjct: 98 YNTIIAWALYYLISSFATTLPWTSCDNSWNTGNCTNYFAKDNITWTLHSTSPAEE--FYT 155
Query: 986 RTTLDV--SPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLT 1043
R L V S + G W + LCL L + IV+F + KG+++SG+VV+ T+ FPYIVL
Sbjct: 156 RHVLQVHRSTGLGDLGGISWQLALCLFLIFTIVYFSIWKGVKTSGKVVWVTATFPYIVLF 215
Query: 1044 IFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQP 1103
I IRG TLPGA G+V+ PK KLL+ VW+DAA Q+F+S G FG L+AF SYN+
Sbjct: 216 ILLIRGATLPGAWRGVVYYLKPKWHKLLETGVWVDAAAQIFFSLGPGFGVLLAFSSYNKF 275
Query: 1104 NNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFT 1163
+NNC +D ++ S+ N LT+ + V+F +LG+ M+ + G L FI +
Sbjct: 276 HNNCYQDALVTSVVNCLTSFVSGFVIFTVLGY--MAEMRNEDVIEVATDAGPSLLFITYA 333
Query: 1164 QAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204
+AI +PG+ F++IIFF+M+++LGL S G LEGV+ + D
Sbjct: 334 EAIANMPGSTFFAIIFFLMIITLGLDSTFGGLEGVITAVLD 374
Score = 88.7 bits (220), Expect = 7e-18
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 8/108 (7%)
Query: 764 CDEHLHLVG------VVCLI--SFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEML 815
DE H++G V+ L+ FL L T G Y +KL + +A ++ + L+E +
Sbjct: 373 LDEFPHVIGKRREIFVLGLVIVCFLGSLATLTFGGAYVVKLLEEYATGPAVLTVVLLEAI 432
Query: 816 AVMFIYGHEKFTNDIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSII 863
AV + YG +F +DI EM G+ PGW+W++ W + P + I+VS ++
Sbjct: 433 AVSWFYGITQFCSDIKEMLGFTPGWFWRVCWVAISPLFLLFIIVSFLM 480
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1;
solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 322 bits (827), Expect = 6e-96
Identities = 152/369 (41%), Positives = 233/369 (63%), Gaps = 13/369 (3%)
Query: 845 TWRFLGPAIMSCILVSSIICRFLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIG 902
TW+ +MSC+ + + + P N AFLIP+ + LI G+PLFL+E +G
Sbjct: 45 TWKGKFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLG 104
Query: 903 QKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSC 962
Q +G LGVW + P GVG+++ +++F++ +YY VII W YYL+NSF+++LPW SC
Sbjct: 105 QYTSIGGLGVWK-LAPMFKGVGLAAAVLSFWLNIYYIVIIAWAIYYLYNSFTTTLPWKSC 163
Query: 963 P----TDH---NGTIIPECELSSETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWII 1015
TD N ++ ++S FW R ++ +E PG +W + + L +AW++
Sbjct: 164 DNPWNTDRCFSNYSMANTTNMTSAVVEFWERNMHQMTDGLEKPGQIRWPLAITLAIAWVL 223
Query: 1016 VFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNV 1075
V+F + KG+ +G+VVYF++ +PYI+L I F RG+TLPGA G++ TP KL D V
Sbjct: 224 VYFCIWKGVGWTGKVVYFSATYPYIMLFILFFRGVTLPGAKEGILFYITPNFSKLSDSEV 283
Query: 1076 WLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGF 1135
WLDAATQ+F+S+GL GSLIA GSYN +NN RD I+V N+ T+++A V+F+I+GF
Sbjct: 284 WLDAATQIFFSYGLGLGSLIALGSYNPFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGF 343
Query: 1136 KAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGIL 1195
M++ + +A +AA G GLAF+ + +A+ +LP +P W+++FF MLL LG+ SQ +
Sbjct: 344 --MAHVTKRP-IADVAASGPGLAFLAYPEAVTQLPISPLWAVLFFSMLLMLGIDSQFCTV 400
Query: 1196 EGVLCTIFD 1204
EG + + D
Sbjct: 401 EGFITALVD 409
Score = 75.0 bits (184), Expect = 2e-13
Identities = 31/95 (32%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGT-IGLVLIALIEMLAVMFIYGHEKFTN 828
+ VVC++S+L+GL T G Y KLFD ++ + + L+ + E +++ + YG +F +
Sbjct: 422 FIAVVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYD 481
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSII 863
+I EM GY+P +W++ W F P I++ + + S +
Sbjct: 482 NIEEMVGYRPCIWWKLCWSFFTPIIVAGVFLFSAV 516
>gnl|CDD|241286 cd01255, PH2_Tiam1_2, T-lymphoma invasion and metastasis 1 and 2
Pleckstrin Homology (PH) domain, C-terminal domain.
Tiam1 activates Rac GTPases to induce membrane ruffling
and cell motility while Tiam2 (also called STEF (SIF
(still life) and Tiam1 like-exchange factor) contributes
to neurite growth. Tiam1/2 are Dbl-family of GEFs that
possess a Dbl(DH) domain with a PH domain in tandem.
DH-PH domain catalyzes the GDP/GTP exchange reaction in
the GTPase cycle and facillitating the switch between
inactive GDP-bound and active GTP-bound states. The DH
domain of Tiam1 interacts with Switch regions 1 and 2 of
Rac1 which blocks magnesium binding and GDP is released.
Tiam1/2 possess two PH domains, which are often referred
to as PHn and PHc domains. The DH-PH tandem domain is
made up of the PHc domain while the PHn is part of a
novel N-terminal PHCCEx domain which is made up of the
PHn domain, a coiled coil region(CC), and an extra region
(Ex). PHCCEx mediates binding to plasma membranes and
signalling proteins in the activation of Rac GTPases. The
PH domain resembles the beta-spectrin PH domain,
suggesting non-canonical phosphatidylinositol binding. CC
and Ex form a positively charged surface for protein
binding. There are 2 motifs in Tiam1/2-interacting
proteins that bind to the PHCCEx domain: Motif-I in CD44,
ephrinBs, and the NMDA receptor and Motif-II in Par3 and
JIP2. PH domains have diverse functions, but in general
are involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 172
Score = 302 bits (775), Expect = 1e-94
Identities = 88/174 (50%), Positives = 114/174 (65%), Gaps = 2/174 (1%)
Query: 1234 QRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWLNISDFLGKIKKGLELHAM 1293
Q+IHEEYGA+FD L R+ + K+ DLS GDLL YG VEWLN LGK+KK E
Sbjct: 1 QKIHEEYGAVFDQLIREQSGTKKEVADLSMGDLLLYGTVEWLNPPSSLGKVKK--EPELA 58
Query: 1294 CFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVLVPVTEVQVRASSAKDMDS 1353
FVFK+AVV +CKER +QKKKL+G + + R++ L+PV+ +QVR S+ D +
Sbjct: 59 VFVFKTAVVLVCKERSKQKKKLMGSHRASSYEDRDPFRFRHLIPVSALQVRNSNTADTEG 118
Query: 1354 HFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQIIRESVRNMSIPMT 1407
LWELIH +S+++ R EKV+ L ST EF+NAFLK IR I+RE VR S
Sbjct: 119 RCLWELIHTKSELEGRPEKVFQLCCSTPEFKNAFLKVIRSILREKVRRQSSKTE 172
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain, and
in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 316 bits (812), Expect = 7e-94
Identities = 155/387 (40%), Positives = 227/387 (58%), Gaps = 55/387 (14%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+++ML L GIP+F +E+ +GQ G + VW I P L G GI+ +++ +A+Y
Sbjct: 38 AFLIPYLMMLALAGIPIFFLEVSLGQFASQGPVSVWKAI-PALQGCGIAMLIISVLIAIY 96
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECE---------------------- 975
YN+I+ + +YLF S LPW+SC N PEC+
Sbjct: 97 YNIIMCYTLFYLFASLVEVLPWASCNNPWN---TPECKDKDKLLLDSCIISDHPKIQIKN 153
Query: 976 ------------------------LSSETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLL 1011
+S YF Y L +S IE PG +W + LCL L
Sbjct: 154 STFCMTAYPNLTMVNFTSVGNKTFVSGSEEYFKY-NVLKISAGIEYPGEIRWPLALCLFL 212
Query: 1012 AWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLL 1071
AW+IV+ + KGI+SSG+VVYFT+ FPY+VL I IRG+TLPGAGAG+ + TPK EKL
Sbjct: 213 AWVIVYASLAKGIKSSGKVVYFTATFPYVVLVILLIRGVTLPGAGAGIWYFITPKWEKLN 272
Query: 1072 DPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFA 1131
D VW DAATQ+F+S A+G LI SYN+ +NNC RD ++V+ N+ T+I+A V+F+
Sbjct: 273 DATVWKDAATQIFFSLSAAWGGLITLSSYNKFHNNCYRDTLIVTCTNSATSIFAGFVIFS 332
Query: 1132 ILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQ 1191
++GF M++ + + +A +G G+AF+V+ +A+ LP +PFW+IIFF+MLL+LGL +
Sbjct: 333 VIGF--MAHELK-VNIESVADQGPGIAFVVYPEALTRLPLSPFWAIIFFLMLLTLGLDTM 389
Query: 1192 IGILEGVLCTIFD-IEIFKRIRKPILT 1217
+E ++ ++ D + R KP+ T
Sbjct: 390 FATIETIVTSVSDEFPKYLRTHKPLFT 416
Score = 81.2 bits (200), Expect = 2e-15
Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 767 HLHLVGVVCLISFLV-GLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEK 825
H L +VC ISF + G T G Y L+L D++A + LV+IA+ E++ + +IYG ++
Sbjct: 411 HKPLFTLVCCISFFIMGFPMITQGGMYMLQLVDTYAASYSLVIIAIFELVGISYIYGLQR 470
Query: 826 FTNDIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSI 862
F DI M G++P +W++ W F+ P I++ IL S
Sbjct: 471 FCEDIEMMIGFQPNKFWRVCWAFVTPTILTFILCFSF 507
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter
1; solute-binding domain. CT1 (also called CRTR, CRT)
transports creatine. Human CT1 is encoded by the SLC6A8
gene. CT1 is ubiquitously expressed, with highest levels
found in skeletal muscle and kidney. Creatine is absorbed
from food or synthesized from arginine and plays an
important role in energy metabolism. Deficiency in human
CT1 leads to X-linked cerebral creatine transporter
deficiency. In males, this disorder is characterized by
language and speech delays, autistic-like behavior,
seizures in about 50% of cases, and can also involve
midfacial hypoplasia, and short stature. In females, it
is characterized by mild cognitive impairment with
behavior and learning problems. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 592
Score = 316 bits (810), Expect = 1e-93
Identities = 147/404 (36%), Positives = 235/404 (58%), Gaps = 37/404 (9%)
Query: 845 TWRFLGPAIMSCILVSSIICRFLKKP--SYSAWNRAFLIPFMVMLILEGIPLFLIELGIG 902
TW IMSC+ + + + P Y FLIP+++++ + GIP+F +E+ +G
Sbjct: 3 TWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYLLIVFVGGIPVFFLEIALG 62
Query: 903 QKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSC 962
Q M+ G + WN I P G+G +S ++ FF YY +I+ W YYL +SF+++LPW++C
Sbjct: 63 QFMKQGGINAWN-IAPLFKGLGYASMVIVFFCNTYYIMILVWGLYYLVHSFTNTLPWATC 121
Query: 963 PTD---------------HNGTIIPE---------CE----LSSETAYFWYRTTLDVSPN 994
NG++ C+ S FW L +S
Sbjct: 122 GHPWNTENCTEIFRHEDCANGSLANSWSQTFLNLSCDELANKRSPVIEFWENKVLRLSGG 181
Query: 995 IESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG 1054
+E PG+ W ++LCLL W+IV+F V KG++S+G++VYFT++FPY+VL + + G+TLPG
Sbjct: 182 LEEPGALNWEMILCLLATWVIVYFCVWKGVKSTGKIVYFTALFPYVVLIVLLVHGVTLPG 241
Query: 1055 AGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMV 1114
A G+++ P KL + VW+DA TQ+F+S+ + G+L A GSYN+ +NNC RD ++
Sbjct: 242 ALDGIIYYLKPDWSKLGEAQVWIDAGTQIFFSYAIGLGALTALGSYNRFHNNCYRDAFIL 301
Query: 1115 SICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPF 1174
++ N+ T+ +A VVF++LGF A + +G ++ +A G GLAFI + +A+ +P AP
Sbjct: 302 ALINSGTSFFAGFVVFSVLGFMA---SEQGVDISKVAESGPGLAFIAYPKAVTLMPVAPL 358
Query: 1175 WSIIFFMMLLSLGLGSQIGILEGVLCTIFDI---EIFKRIRKPI 1215
W+ +FF MLL LGL SQ +EG + I D+ + + R+R+ I
Sbjct: 359 WAALFFFMLLLLGLDSQFVGVEGFITGILDLFPQKYYGRLRREI 402
Score = 58.0 bits (140), Expect = 3e-08
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 771 VGVVCLISFLVGLIFTTGAGEYWLKLFDSF-AGTIGLVLIALIEMLAVMFIYGHEKFTND 829
+ CL+ FL+ L T G Y +LFD + A I L+ A E + + ++YG ++F +D
Sbjct: 404 AALCCLLCFLIDLSMVTQGGMYVFQLFDYYSASGITLLWQAFWECVVIAWVYGADRFMDD 463
Query: 830 IYEMTGYKPGWYWQITWRFLGPAIMSCILVSSII 863
I M GY+P + + W + P + I + ++
Sbjct: 464 IARMIGYRPLPWMKWCWSVITPLVCVGIFLFHVV 497
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)- and
Cl(-)-dependent, high-affinity, low-capacity transporter
of taurine and beta-alanine. Human TauT is encoded by the
SLC6A6 gene. TauT is expressed in brain, retina, liver,
kidney, heart, spleen, and pancreas. It may play a part
in the supply of taurine to the intestinal epithelium and
in the between-meal-capture of taurine. It may also
participate in re-absorbing taurine that has been
deconjugated from bile acids in the distal lumen.
Functional TauT protects kidney cells from nephrotoxicity
caused by the chemotherapeutic agent cisplatin; cisplatin
down-regulates TauT in a p53-dependent manner. In mice,
TauT has been shown to be important for the maintenance
of skeletal muscle function and total exercise capacity.
TauT-/- mice develop additional clinically important
diseases, some of which are characterized by apoptosis,
including vision loss, olfactory dysfunction, and chronic
liver disease. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 542
Score = 312 bits (802), Expect = 3e-93
Identities = 133/346 (38%), Positives = 202/346 (58%), Gaps = 24/346 (6%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+ + L G+P+F +E+ +GQ G + W + P G+G +S ++ + +Y
Sbjct: 38 AFLIPYFIFLFGGGLPVFFLEVALGQYTSEGGITCWEKLCPIFTGIGYASIVIVSLLNIY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPEC------------------ELSSE 979
Y VI+ W YYLF SF S LPW+ C N P C +S
Sbjct: 98 YIVILAWGLYYLFQSFQSELPWAHCNQSWN---TPNCVEDTLRKNKTLWASINATNFTSP 154
Query: 980 TAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPY 1039
FW R L +S IE G+ KW + LCLLL W+I FF + KG++S+G+VVYFT+ FP+
Sbjct: 155 VTEFWERNVLSLSSGIEHVGTIKWDLALCLLLVWVICFFCIWKGVKSTGKVVYFTATFPF 214
Query: 1040 IVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGS 1099
++L + IRG+TLPGA G+ P + +L DP VW+DA TQ+F+S+ + G++ + GS
Sbjct: 215 LMLIVLLIRGVTLPGAAEGIKFYLYPDITRLGDPQVWIDAGTQIFFSYAICLGAMTSLGS 274
Query: 1100 YNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAF 1159
YN+ NC RD +++ N+ T+ + +F++LGF A +G +A +A G GLAF
Sbjct: 275 YNKYKYNCYRDCMLLGCLNSGTSFVSGFAIFSVLGFMAQE---QGVDIADVAESGPGLAF 331
Query: 1160 IVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDI 1205
I + +A+ +P FW+I+FF+MLL LGL SQ +EG + ++ D+
Sbjct: 332 IAYPKAVTMMPLPTFWAILFFIMLLLLGLDSQFVEVEGQITSLVDL 377
Score = 72.9 bits (179), Expect = 8e-13
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGT-IGLVLIALIEMLAVMFIYGHEKFTN 828
+ +VC IS+L+GL T G Y +LFD +A + + L+ +A E +AV ++YG + F +
Sbjct: 391 FIAIVCFISYLLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECIAVAWVYGADNFYD 450
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSII 863
I +M GY+PG + + +W + P + + S++
Sbjct: 451 AIEDMIGYRPGPWMKWSWIVITPVLCVGCFIFSLV 485
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine with
low affinity, and can transport dipolar and cationic
amino acids such as leucine and lysine, with a higher
affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in colorectal
cancer. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 601
Score = 313 bits (804), Expect = 8e-93
Identities = 152/378 (40%), Positives = 216/378 (57%), Gaps = 45/378 (11%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+ +ML L G+PLF +E +GQ LG + VW + P L GVGI+ LV+ FV++Y
Sbjct: 38 AFLIPYTIMLALAGLPLFFLECSLGQFASLGPISVWRAV-PLLQGVGITMVLVSTFVSIY 96
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHN----GTIIPECELS---------------- 977
YNVII + YY+F SF S LPWS C + + + I C +S
Sbjct: 97 YNVIIAYSLYYMFASFQSPLPWSDCSSWADENCSTSPITHCNVSLANNGIHENKSWVDSN 156
Query: 978 ---------------SETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMK 1022
+ +W + L S ++ G W++ LCLLLAWIIV + K
Sbjct: 157 NLTCINISIIYQPGQLPSEQYWDKVALQRSSGMDETGPIVWYLALCLLLAWIIVGAALFK 216
Query: 1023 GIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPK---VEKLLDPNVWLDA 1079
GI+SSG+VVYFT++FPY+VL I +RG TL GA G + Y + KL++ VW DA
Sbjct: 217 GIKSSGKVVYFTALFPYVVLLILLVRGATLEGAKDG-IEYYIGSQSNLTKLMEAEVWKDA 275
Query: 1080 ATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMS 1139
ATQ+FYS +A+G L+A SYN+ +NNC D I+V + N LT+++A +F++LG A
Sbjct: 276 ATQIFYSLSVAWGGLVALSSYNKFHNNCFSDAIVVCVTNCLTSVFAGFAIFSVLGHMAH- 334
Query: 1140 NAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVL 1199
++ + G LAFI + +A+ +LP +P WSI+FF MLL+LGL SQ +E +
Sbjct: 335 --VLKKPVSEVVDSGFDLAFIAYPEALAKLPISPLWSILFFFMLLTLGLDSQFAGIETIT 392
Query: 1200 CTIFDI--EIFKRIRKPI 1215
TI D ++ K+ R PI
Sbjct: 393 TTIQDAFPKVMKKKRIPI 410
Score = 88.7 bits (220), Expect = 1e-17
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 774 VCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEM 833
VC+I FL+GL T AG YW+ L D F G++ A++E++ +++IYG +F DI M
Sbjct: 414 VCIILFLLGLPCVTQAGIYWVNLIDHFCAGWGILFAAVLELIGIIWIYGGNRFIEDIEMM 473
Query: 834 TGYKPGW---YWQITWRFLGPAIMSCILVSSIICRFLKKPSYSA-----WNRAF---LIP 882
G K +W+ W F+ P ++ IL+ S++ P+Y + W A +I
Sbjct: 474 IGKKSWIFWLWWRACWFFITPVLLIAILIWSLV--TFHSPTYGSVPYPDWGTALGWCMIA 531
Query: 883 FMVMLI 888
F ++ I
Sbjct: 532 FCLIWI 537
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter of
gamma-aminobutyric acid (GABA), and can also transport
betaine. GABA is the main inhibitory neurotransmitter
within the mammalian CNS. Human BGT1 is encoded by the
SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2
plays a role in transporting GABA across the blood-brain
barrier. In addition to being expressed in cells of the
central nervous system, BGT1 is expressed in peripheral
tissues, including kidney, liver, and heart. An
association has been shown between the SLC6A12 gene and
the occurrence of aspirin-intolerant asthma, and BGT1 is
a drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 541
Score = 306 bits (784), Expect = 8e-91
Identities = 132/341 (38%), Positives = 202/341 (59%), Gaps = 16/341 (4%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+++ L GIPLF +E +GQ G + W I P G+G +S ++ ++ +Y
Sbjct: 39 AFLIPYLIFLFTCGIPLFFLETALGQYTSQGGVTAWRKICPIFEGIGYASQVIESYLNVY 98
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHN-------------GTIIPECELSSETAYFW 984
Y +I++W +YLF+SF+S LPW++C N P +S FW
Sbjct: 99 YIIILSWALFYLFSSFTSVLPWATCNNPWNSDLCVDFLNHSGADNRTPPENATSPVMEFW 158
Query: 985 YRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTI 1044
+ L ++ I G+ +W + LCLLLAWII +F + KG++S+G+VVYFT+ FPY++L I
Sbjct: 159 EKRVLGLTDGIHKLGTVRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVI 218
Query: 1045 FFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPN 1104
+RG+TLPGA G++ P + +L DP VW+DA TQ+ +S+ + G L A GSYN+
Sbjct: 219 LLVRGVTLPGAAEGIIFYLKPDLSRLADPQVWMDAGTQILFSYAICQGCLTALGSYNKYT 278
Query: 1105 NNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQ 1164
NNC RD IM+ N+ T+ A +F++LGF A +G ++ +A G GLAFI +
Sbjct: 279 NNCYRDCIMLCFLNSATSFVAGFAIFSVLGFMARE---QGVPISEVAESGPGLAFIAYPT 335
Query: 1165 AIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDI 1205
A+ +P + WS +FF+ML+ LGL SQ +E ++ D+
Sbjct: 336 AVTMMPVSQLWSCLFFLMLIFLGLDSQFVCVESMVTASIDM 376
Score = 67.6 bits (165), Expect = 3e-11
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGT-IGLVLIALIEMLAVMFIYGHEKFTN 828
L+ + +I +L+GL+ T G Y +LFD +A + L+ +A+ E++ + ++YG +F +
Sbjct: 390 LILAIAVICYLLGLLLVTEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGWVYGANRFYD 449
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIP------ 882
+I +M GY+P +I W P + + + S+I K + +N +++ P
Sbjct: 450 NIEDMIGYRPWPLIKICWLVFTPGLCLAVFLFSLI-----KYTPLKYNNSYVYPPWGYVL 504
Query: 883 --FMVMLILEGIPLFLI 897
M + + IPL+ I
Sbjct: 505 GWLMALSSMVCIPLYAI 521
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a role
in schizophrenia. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 585
Score = 303 bits (777), Expect = 2e-89
Identities = 145/355 (40%), Positives = 217/355 (61%), Gaps = 32/355 (9%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AF+ P+ +ML+ GIPLF +EL GQ G LGVW + P GVG +V+ ++ +Y
Sbjct: 54 AFMFPYFIMLVFCGIPLFFMELSFGQFASQGCLGVWR-VSPMFKGVGYGMMVVSTYIGIY 112
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSC--------------PTDHNGTIIPECEL------- 976
YNV+I FYY F S + LPW+ C N T +
Sbjct: 113 YNVVICIAFYYFFMSMTRVLPWTYCNNPWNTPDCAGVLSTNRSNATFANMSAVVSNLTEL 172
Query: 977 -------SSETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGR 1029
+S + +W R L++S +I + G + ++ CL ++W++VF +++G++SSG+
Sbjct: 173 LNRTLKRTSPSEEYWRRYVLNISDDIGNFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSGK 232
Query: 1030 VVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGL 1089
VVYFT+ FPY+VLTI FIRGITL GA +G+++ TP+ +K+LD VW DAA+Q+FYS G
Sbjct: 233 VVYFTATFPYVVLTILFIRGITLEGAISGIMYYLTPQWDKILDAKVWGDAASQIFYSLGC 292
Query: 1090 AFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAF 1149
A+G LI SYN+ +NNC RD I++SI N T++YA V+F+ILGF M+N G ++
Sbjct: 293 AWGGLITMASYNKFHNNCYRDSIIISITNCATSVYAGFVIFSILGF--MANHL-GVDVSE 349
Query: 1150 IAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204
+A G GLAF+ + +A+ LP +P WS++FF ML+ LGLG+Q +LE ++ + D
Sbjct: 350 VADHGPGLAFVAYPEALTLLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAVVD 404
Score = 95.4 bits (237), Expect = 7e-20
Identities = 41/90 (45%), Positives = 61/90 (67%)
Query: 774 VCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEM 833
V +I FL+G+ TT AG YWL L D++A + LV+I+ I +A+M+IYGH + DI M
Sbjct: 422 VAIIGFLLGIPLTTQAGIYWLLLMDNYAASFSLVIISCIMCIAIMYIYGHRNYFKDIEMM 481
Query: 834 TGYKPGWYWQITWRFLGPAIMSCILVSSII 863
G+ P ++QI WRF+ PAI+ IL+ ++I
Sbjct: 482 LGFPPPLFFQICWRFVSPAIIFFILIFTVI 511
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2;
solute-binding domain. This family includes human GAT2
(hGAT2) which transports gamma-aminobutyric acid (GABA).
GABA is the main inhibitory neurotransmitter within the
mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and
is similar to mouse GAT-3, and rat GAT2. hGAT2 is
expressed in brain, kidney, lung, and testis. hGAT2 is a
potential drug target for treatment of epilepsy. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 544
Score = 301 bits (772), Expect = 3e-89
Identities = 137/350 (39%), Positives = 206/350 (58%), Gaps = 23/350 (6%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AF IP+++ L GIP+F +E +GQ G + W I P G+G +S ++ + Y
Sbjct: 38 AFFIPYLIFLFTCGIPVFFLETALGQYTSQGGVTCWRKICPLFEGIGYASQVIVALLNFY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSC---------------PTDHNGTIIPECELSSETAY 982
Y +++ W +YLFNSF+ LPWSSC N T+ +S
Sbjct: 98 YIIVLAWALFYLFNSFTWELPWSSCNHTWNTENCVEFQKRNYSVNVTLE---NATSPVIE 154
Query: 983 FWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVL 1042
FW R L +S IE GS +W + LCLLLAW+I +F + KG++S+G+VVYFT+ FPY++L
Sbjct: 155 FWERRVLRISDGIEHIGSLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLML 214
Query: 1043 TIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQ 1102
+ IRG+TLPGA G+ P + +L DP VW+DA TQ+F+S+ + G L A GSYN+
Sbjct: 215 VVLLIRGVTLPGASLGIQFYLYPDLSRLADPQVWMDAGTQIFFSYAICLGCLTALGSYNK 274
Query: 1103 PNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVF 1162
NNNC RD I + N+ T+ A +F+ILGF A +G ++ +A G GLAFI +
Sbjct: 275 YNNNCYRDCIALCFLNSGTSFVAGFAIFSILGFMAYE---QGVPISEVAESGPGLAFIAY 331
Query: 1163 TQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDI--EIFKR 1210
+A+ +P +P W+ FF+M++ LGL SQ +E ++ + D+ E+F++
Sbjct: 332 PRAVSMMPFSPLWACFFFIMIVLLGLDSQFVCVESLVTAMVDMYPEVFRK 381
Score = 75.7 bits (186), Expect = 9e-14
Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 10/135 (7%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGT-IGLVLIALIEMLAVMFIYGHEKFTN 828
L+ V ++SFLVGLI T G Y +LFD +A + + L+ +A+ E L + ++YG ++F +
Sbjct: 388 LILFVSIVSFLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCIAWVYGADRFYD 447
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSII----CRFLKKPSYSAWNRA--FLIP 882
+I +M GY+PG Y + W F+ PA+ + S+I ++ K+ Y W A +L+
Sbjct: 448 NIEDMIGYRPGPYIKYCWLFITPAVCVATFLFSLIKYTPLKYNKEYVYPWWGDAIGWLLA 507
Query: 883 FMVMLILEGIPLFLI 897
M+ IPL++I
Sbjct: 508 LSSMVC---IPLWII 519
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also called
NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 298 bits (763), Expect = 8e-88
Identities = 144/355 (40%), Positives = 213/355 (60%), Gaps = 23/355 (6%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+ + LI+ G+PLF +EL +GQ R G+ VW I P GVG + L+ +V Y
Sbjct: 38 AFLIPYTLFLIIAGMPLFYMELALGQYNREGAATVWK-ICPCFKGVGYAVILIALYVGFY 96
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSC------PTDHNGTIIPECELSSETAYFWYRTT--- 988
YNVII W YYLF+SF+S LPW++C P + ++ L + T Y Y+ T
Sbjct: 97 YNVIIAWSLYYLFSSFTSELPWTTCGNVWNSPNCTDPKLLNASVLGNGTKYSKYKLTPAA 156
Query: 989 ---------LDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPY 1039
L S I G P+W + LCL + I++FF + KG+++SG+VV+ T+ PY
Sbjct: 157 EFYERGVLHLHESAGIHDLGLPRWQLTLCLFVVVIVLFFSLWKGVKTSGKVVWITATLPY 216
Query: 1040 IVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGS 1099
+VL + I G+TLPGA G+ ++L + VW+DAATQ+FYS G FG LIAF S
Sbjct: 217 VVLFVLLIHGVTLPGAFNGINAYLHIDFKRLKEATVWIDAATQIFYSLGAGFGVLIAFAS 276
Query: 1100 YNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAF 1159
YN+ +NNC RD ++ S N +T+ + +F+ILG+ A + + + +A EG GL F
Sbjct: 277 YNKFDNNCYRDALLTSTINCVTSFISGFAIFSILGYMAHEHKVK---IEDVATEGAGLVF 333
Query: 1160 IVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIF-DIEIFKRIRK 1213
I++ +AI L G+ FW+++FF+MLL+LG+ S +G +E V+ + D I K+ RK
Sbjct: 334 ILYPEAISTLSGSTFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDFSILKKHRK 388
Score = 87.3 bits (216), Expect = 2e-17
Identities = 34/90 (37%), Positives = 57/90 (63%)
Query: 774 VCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEM 833
V I+FL+ L T G Y L L D+FA ++ L+E + V + YG ++F++DI +M
Sbjct: 394 VAFITFLLALFCITNGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSDDIQQM 453
Query: 834 TGYKPGWYWQITWRFLGPAIMSCILVSSII 863
G++PG YW++ W+F+ PA + +++ SII
Sbjct: 454 MGFRPGLYWRLCWKFVSPAFLLFVVIVSII 483
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3;
solute-binding domain. This family includes human GAT3
(hGAT3) a high-affinity transporter of gamma-aminobutyric
acid (GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT3 is encoded by the SLC6A11
gene, and is similar to mouse GAT4, and rat GAT3/GATB.
GAT3 is expressed primarily in the glia of the brain, and
is a potential drug target for antiepileptic drugs. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 542
Score = 294 bits (754), Expect = 8e-87
Identities = 135/351 (38%), Positives = 206/351 (58%), Gaps = 23/351 (6%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP++V I GIP+F +E +GQ G + W + P G+G ++ ++ + +Y
Sbjct: 39 AFLIPYVVFFICCGIPVFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVY 98
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSC----------------PTDHNGTIIPECELSSETA 981
Y +I+ W +YLFN F++ LPW++C ++ + + +S
Sbjct: 99 YIIILAWAIFYLFNCFTTELPWATCGHEWNTENCVEFQKLNSSNCSHVSLQNA--TSPVM 156
Query: 982 YFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIV 1041
FW R L +S IE G+ +W + LCLL AW I +F + KG +S+G+VVY T+ FPYI+
Sbjct: 157 EFWERRVLAISDGIEHIGNLRWELALCLLAAWTICYFCIWKGTKSTGKVVYVTATFPYIM 216
Query: 1042 LTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYN 1101
L I IRG+TLPGA G+ P + +L DP VW+DA TQ+F+S+ + G L A GSYN
Sbjct: 217 LLILLIRGVTLPGASEGIKFYLYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYN 276
Query: 1102 QPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIV 1161
NNNC RD IM+ N+ T+ A +F++LGF A +G +A +A G GLAFI
Sbjct: 277 NYNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYE---QGVPIAEVAESGPGLAFIA 333
Query: 1162 FTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDI--EIFKR 1210
+ +A+ +P +P W+ +FFMML+ LGL SQ +E ++ + D+ ++F+R
Sbjct: 334 YPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTAVVDMYPKVFRR 384
Score = 67.7 bits (165), Expect = 3e-11
Identities = 34/135 (25%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGT-IGLVLIALIEMLAVMFIYGHEKFTN 828
L+ + ++S+ +GL+ T G Y +LFDS+A + + L+ +A+ E + + ++YG +F +
Sbjct: 391 LILALSIVSYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFECICIGWVYGSNRFYD 450
Query: 829 DIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSII----CRFLKKPSYSAWNRA--FLIP 882
+I +M GY+P + W + P I + I + ++ ++ +Y W +L+
Sbjct: 451 NIEDMIGYRPLSLIKWCWMVITPGICAGIFIFFLVKYKPLKYNNVYTYPDWGYGIGWLMA 510
Query: 883 FMVMLILEGIPLFLI 897
M+ IPL++
Sbjct: 511 LSSMIC---IPLWIC 522
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may play
a role in diseases or disorders related to dopaminergic
neurons, including attention-deficit hyperactivity
disorder (ADHD), Tourette syndrome, Parkinson's disease,
alcoholism, drug abuse, schizophrenia, extraversion, and
risky behavior. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 555
Score = 285 bits (731), Expect = 1e-83
Identities = 134/356 (37%), Positives = 210/356 (58%), Gaps = 29/356 (8%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFL+P++ +++ G+PLF +EL +GQ R G+ GVW I P GVG + L++ +V +
Sbjct: 38 AFLVPYLFFMVIAGMPLFYMELALGQFNREGAAGVWK-ICPIFKGVGFTVILISLYVGFF 96
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFW--------YRTT- 988
YNVII W +YLF+SF+ LPW C N P C + Y+TT
Sbjct: 97 YNVIIAWALFYLFSSFTGELPWIHCNNSWNS---PNCSDAHPGDSSGDSSGLNDTYKTTP 153
Query: 989 -----------LDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF 1037
L S I G P+W + CL++ ++++F + KG+++SG+VV+ T+
Sbjct: 154 AAEYFERGVLHLHESHGIHDLGPPRWQLTSCLVVVIVLLYFSLWKGVKTSGKVVWITATM 213
Query: 1038 PYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAF 1097
PY+VLT +RG+TLPGA G+ + +L + +VW+DAATQ+ +S G+ FG LIAF
Sbjct: 214 PYVVLTALLLRGVTLPGAIDGIKAYLSVDFLRLCEASVWIDAATQICFSLGVGFGVLIAF 273
Query: 1098 GSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGL 1157
SYN+ NNC RD I+ + N+LT+ ++ VVF+ LG+ A + + +A +G GL
Sbjct: 274 SSYNKFTNNCYRDAIITTSINSLTSFFSGFVVFSFLGYMAQKH---NVPIGDVAKDGPGL 330
Query: 1158 AFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRK 1213
FI++ +AI LP + W++IFF+MLL+LG+ S +G +E V+ + I+ FK + +
Sbjct: 331 IFIIYPEAIATLPLSSVWAVIFFIMLLTLGIDSAMGGMESVITGL--IDEFKFLHR 384
Score = 76.9 bits (189), Expect = 4e-14
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 774 VCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEM 833
+ L +FL+ L T G Y L D FA ++ LIE + + + YG +F++DI EM
Sbjct: 393 IVLSTFLISLFCVTNGGIYVFTLLDHFAAGTSILFGVLIEAIGIAWFYGVGRFSDDIEEM 452
Query: 834 TGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAW 875
G +PG YW++ W+F+ P + ++V SI+ + P Y ++
Sbjct: 453 IGQRPGLYWRLCWKFVSPCFLLFVVVVSIVT--FRPPKYGSY 492
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter transporters
(NTTs): these are sodium- and chloride-dependent plasma
membrane transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters GABA
and glycine. These NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, and are the
target of a range of therapeutic drugs for the treatment
of psychiatric diseases. Bacterial members of the SLC6
family include the LeuT amino acid transporter.
Length = 406
Score = 258 bits (660), Expect = 8e-76
Identities = 102/355 (28%), Positives = 166/355 (46%), Gaps = 59/355 (16%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGV 923
L+ PS N F IP+++ L+L IP+ ++EL +GQ R G + +N I+ GV
Sbjct: 23 LLRFPSVVYNNGGLQFFIPYLLALVLLAIPILILELALGQAYRGGCVKAFNLINRRAKGV 82
Query: 924 GISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYF 983
G + F V YY I+ W Y +S
Sbjct: 83 GAAVVFGGFVVCTYYVPILAWIMVYFRHS------------------------------- 111
Query: 984 WYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLT 1043
+ V L W +V+ V +G+ S+GRVVY T P +++
Sbjct: 112 --------------------FTVGWLAFTWFVVWLCVFRGVGSTGRVVYITMGLPIVLII 151
Query: 1044 IFFIRGITLPGAGAGLVHMYTP-KVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQ 1102
I RG +LP AG G+ + + +KL +W AA QVF+S G+ FG + A+ SYN
Sbjct: 152 ILLGRGASLPNAGDGIRLYFATWRGDKLASGEIWQAAAGQVFFSTGVGFGYMTAYASYNS 211
Query: 1103 PNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVF 1162
+N V+D ++++ N+L I A VF I+G+ M+ EG L G L F+ +
Sbjct: 212 KFSNAVQDALIIAGSNSLFEIIAGFAVFGIVGYLGMTPGVEGEALG-----GFVLGFVTY 266
Query: 1163 TQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPILT 1217
+AI ++PG+ F++++FF+ L LG+ S +LE V+ I D +++++ +
Sbjct: 267 PEAIAQMPGSNFFAVLFFLTLFLLGISSAFALLEAVVTLICDSGWGRKVKRWWIA 321
Score = 44.6 bits (106), Expect = 4e-04
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 773 VVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYE 832
VVC +SFL+ L + T G Y L D++ + LV + E +A +Y E D+ +
Sbjct: 323 VVCFVSFLLSLPYCTRFGYYLLDAVDAWISNVALVFVVWAECVAATTVYRFE----DVVD 378
Query: 833 MTGYKPGWYWQITWRFLGPAIMSCI 857
G Y+ + + G + +
Sbjct: 379 QVGLPAFAYYNVG--YAGGQTLGAV 401
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter transporters
(NTTs): these are sodium- and chloride-dependent plasma
membrane transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters GABA
and glycine. These NTTs are widely expressed in the
mammalian brain, involved in regulating neurotransmitter
signaling and homeostasis, and the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 480
Score = 260 bits (666), Expect = 1e-75
Identities = 109/329 (33%), Positives = 174/329 (52%), Gaps = 24/329 (7%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
AFLIP+++ L+ GIPL ++E G+G K R + + I+ +G LV F +A Y
Sbjct: 38 AFLIPYLIALLTAGIPLLILEYGLGHKFRGSAPLAFRRINKKFEWIGWWQVLVAFVIATY 97
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIES 997
Y VII W YLF SF+ L W P A+F + L +S
Sbjct: 98 YAVIIAWALSYLFFSFT--LAWGDDPE----------------AFF-FGDFLQLSDGPFD 138
Query: 998 PGSPKWWIVLCLLLAWIIVFFIVMKGIQSS-GRVVYFTSMFPYIVLTIFFIRGITLPGAG 1056
G W I++ L+L W+I++FI+ +G++ + +++ I IR +TLPGA
Sbjct: 139 LGGFVWPILIALVLVWLIIWFILYRGVKKGIEKANKIFMPLLFVLFLILVIRALTLPGAA 198
Query: 1057 AGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSI 1116
GL ++TP LLDP VW+ A Q+F+S + FG +I + SY ++ + ++V+
Sbjct: 199 DGLNALFTPDWSALLDPKVWIAAYGQIFFSLSVGFGIMITYASYLPKKSDLTNNALIVAF 258
Query: 1117 CNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVEL-PGAPFW 1175
N+ I A + VF+ILGF M+ A G ++ + + G GLAF+ F +AI + PG +
Sbjct: 259 ANSSFEILAGIGVFSILGF--MAQAQ-GVPVSEVVSSGIGLAFVAFPKAINLMPPGGALF 315
Query: 1176 SIIFFMMLLSLGLGSQIGILEGVLCTIFD 1204
++FF+ L+ GL S I ++E V+ + D
Sbjct: 316 GVLFFLSLVFAGLTSLISLVEVVISALQD 344
Score = 88.3 bits (220), Expect = 7e-18
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 3/127 (2%)
Query: 771 VGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDI 830
V +VCL+ FLV L+F TGAG Y L + D F G+VL+ L+E++ V +++G EK +
Sbjct: 354 VTIVCLVGFLVSLLFATGAGLYLLDIVDHFINNYGIVLVGLVEVIVVGWVFGAEKLREHL 413
Query: 831 YEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKP--SYSAWNRAFLIPFMVMLI 888
++ +K G +W + + P ++ +L+ +I L +P Y W +V LI
Sbjct: 414 NAVSDFKVGKWWDFLIKVVTPLVLGYMLILGLI-GLLTEPYGGYPVWALLIFGWGIVALI 472
Query: 889 LEGIPLF 895
L L
Sbjct: 473 LVAALLL 479
>gnl|CDD|241264 cd01230, PH1_Tiam1_2, T-lymphoma invasion and metastasis 1 and 2
Pleckstrin Homology (PH) domain, N-terminal domain.
Tiam1 activates Rac GTPases to induce membrane ruffling
and cell motility while Tiam2 (also called STEF (SIF
(still life) and Tiam1 like-exchange factor) contributes
to neurite growth. Tiam1/2 are Dbl-family of GEFs that
possess a Dbl(DH) domain with a PH domain in tandem.
DH-PH domain catalyzes the GDP/GTP exchange reaction in
the GTPase cycle and facillitating the switch between
inactive GDP-bound and active GTP-bound states. Tiam1/2
possess two PH domains, which are often referred to as
PHn and PHc domains. The DH-PH tandem domain is made up
of the PHc domain while the PHn is part of a novel
N-terminal PHCCEx domain which is made up of the PHn
domain, a coiled coil region(CC), and an extra region
(Ex). PHCCEx mediates binding to plasma membranes and
signalling proteins in the activation of Rac GTPases.
The PH domain resembles the beta-spectrin PH domain,
suggesting non-canonical phosphatidylinositol binding.
CC and Ex form a positively charged surface for protein
binding. There are 2 motifs in Tiam1/2-interacting
proteins that bind to the PHCCEx domain: Motif-I in
CD44, ephrinBs, and the NMDA receptor and Motif-II in
Par3 and JIP2.Neither of these fall in the PHn domain.
PH domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 127
Score = 230 bits (588), Expect = 3e-70
Identities = 72/120 (60%), Positives = 89/120 (74%), Gaps = 1/120 (0%)
Query: 1 FLSVKKWLLRKKH-QIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVD 59
+LSVK +L KK ++ELA +R WK YWV LKG TLLFY CD R G ++ PKH + V+
Sbjct: 8 WLSVKNFLTHKKKKKLELASRRKWKKYWVTLKGCTLLFYECDERTGIDDNSTPKHALFVE 67
Query: 60 GAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHRGKTG 119
G+I Q +PEHPK+D +FCLS +FGDAYLFQA Q ELENW+ +IHSACA+AFAR GK
Sbjct: 68 GSIAQAVPEHPKKDNVFCLSNSFGDAYLFQATSQTELENWITAIHSACASAFARQHGKED 127
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 193 bits (494), Expect = 2e-53
Identities = 97/327 (29%), Positives = 153/327 (46%), Gaps = 51/327 (15%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHP-----WLGGVGISSCLVTF 932
AFL+P+++ L+L GIPL L E IG++ R ++G + + P W+G G+ L F
Sbjct: 42 AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGV---LGGF 98
Query: 933 FVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVS 992
+ +Y+VI W YL S + +LP G + A + +T
Sbjct: 99 LILSFYSVIGGWILSYLVKSLTGALP-------DTGE---------QFAQLFGQT----- 137
Query: 993 PNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSS-GRVVYFTSMFP--YIVLTIFFIRG 1049
I +P V+ LL ++ IV +G++ + M P +++ I IR
Sbjct: 138 --ISNP----GLAVIFHLLFLVLTALIVSRGVKKGIEKANKI--MMPLLFVLFIILVIRA 189
Query: 1050 ITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVR 1109
+TLPGA GL ++ P KL DP VWL A Q F+S L FG +I + SY ++ V
Sbjct: 190 VTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVS 249
Query: 1110 DVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVEL 1169
+ + + N L ++ A +V+F L A++G GL FIV ++
Sbjct: 250 SALSIVLLNTLISLLAGLVIFPALFSFGAD-----------ASQGPGLVFIVLPAVFNQM 298
Query: 1170 PGAPFWSIIFFMMLLSLGLGSQIGILE 1196
P + I+FF++LL L S I +LE
Sbjct: 299 PLGTLFGILFFLLLLFAALTSAISMLE 325
Score = 55.3 bits (134), Expect = 2e-07
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 773 VVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYE 832
++ ++ FL+G+ G L D I + L AL+ + V ++ E ++
Sbjct: 345 LIGILIFLLGIPSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKELLREEL-N 403
Query: 833 MTGYKPGWYWQITWRFLGPAIMSCILVSSII 863
K W R++ P ++ +L+
Sbjct: 404 AGSAKLFKIWLYLVRYIAPIVILVVLILGFY 434
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium
nucleatum Tyt1-like; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter transporters
(NTTs): these are sodium- and chloride-dependent plasma
membrane transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters GABA
and glycine. These NTTs are widely expressed in the
mammalian brain, involved in regulating neurotransmitter
signaling and homeostasis, and the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic and
archaeal NTTs. However, this subfamily which contains the
majority of bacterial members and some archaeal members,
appears to contain only 11 TMs; for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 439
Score = 181 bits (462), Expect = 3e-49
Identities = 107/341 (31%), Positives = 162/341 (47%), Gaps = 46/341 (13%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMR---LGSLGVWNTIHPWLGGVGISSCLVTFFV 934
AFL+ +++ ++L G+PL + E IG++ R +G+ VG L F +
Sbjct: 37 AFLLVYLLFVLLIGLPLLIAEFAIGRRTRKNPVGAFAKLAKGGKKWKLVGWLGVLGAFLI 96
Query: 935 ALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPN 994
+Y+V+ W YLF S + S G + + A F+
Sbjct: 97 LSFYSVVGGWVLAYLFKSLTGSF---------AGA-----DAAEVGAAFFG--------F 134
Query: 995 IESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFP--YIVLTIFFIRGITL 1052
I SP SP W +L LLL +IV V KGI+ + ++ + P +++L I IR +TL
Sbjct: 135 IASPLSPLLWHLLFLLLTALIVARGVKKGIERASKI-----LMPLLFVLLIILAIRSLTL 189
Query: 1053 PGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVI 1112
PGAG GL ++ P K L P V L A Q F+S L G +I +GSY + N + +
Sbjct: 190 PGAGEGLKFLFKPDFSK-LTPEVVLAALGQAFFSLSLGMGVMITYGSYLPKDENLPKSAL 248
Query: 1113 MVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGA 1172
+V+I + L A+ A +V+F + F A G GL FI L VF Q +PG
Sbjct: 249 IVAILDTLVALLAGLVIFPAV-FAFGLEPAAGPGLLFIT-----LP-AVFAQ----MPGG 297
Query: 1173 PFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRK 1213
+ I+FF++LL L S I +LE + + I+ F RK
Sbjct: 298 RLFGILFFLLLLFAALTSAISLLEVPVAYL--IDEFGWSRK 336
Score = 47.0 bits (113), Expect = 6e-05
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTND 829
L+G+ +SF V L T G+ L D I L L L+ + V ++ G E +
Sbjct: 348 LLGIPSALSFGV-LSDPTIFGKTIFDLLDFLVSNILLPLGGLLIAIFVGWVLGKEALREE 406
Query: 830 IYEMTGYKPGWYWQITWRFLGPAIMSCILVSSI 862
+ + G K W+ R++ P ++ I + +
Sbjct: 407 LNKGRGKKLFKIWRFLLRYVAPVLILIIFLLGL 439
>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange
factor for Rho/Rac/Cdc42-like GTPases Also called
Dbl-homologous (DH) domain. It appears that PH domains
invariably occur C-terminal to RhoGEF/DH domains.
Improved coverage.
Length = 180
Score = 162 bits (411), Expect = 2e-45
Identities = 70/177 (39%), Positives = 95/177 (53%), Gaps = 14/177 (7%)
Query: 597 VIIELIETERTYVKNLNGLLENYLEPLKKE-TFLSGAEINALFGNILEIVAFQRQFLQNL 655
V+ EL++TER YV++L L+E +L+PLKKE LS E+ LFGNI EI F R FL L
Sbjct: 1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDEL 60
Query: 656 VEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGN 715
E +E D IG FL FK+YS +C++H A ++L + N
Sbjct: 61 EERIEEWDDSVE------------RIGDVFLKLEEFFKIYSEYCSNHPDALELLKKLKKN 108
Query: 716 QALQEFLSSRNPRQQHSS-TLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHLV 771
Q+FL Q TLES L+KP+QR+ KYPLLL++L T ++ L
Sbjct: 109 PRFQKFLKEIESSPQCRRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHEDREDLK 165
>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
(DH) domain. It appears that PH domains invariably occur
C-terminal to RhoGEF/DH domains.
Length = 181
Score = 159 bits (403), Expect = 2e-44
Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 15/179 (8%)
Query: 594 LSKVIIELIETERTYVKNLNGLLENYLEPLKKE-TFLSGAEINALFGNILEIVAFQRQFL 652
+VI EL++TER YV++L L+E +L+PL KE LS E+ LFGNI EI F R FL
Sbjct: 1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDKELLPLSPEEVELLFGNIEEIYEFHRIFL 60
Query: 653 QNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVL-HP 711
++L E +E IG FL FK+YS +C++H A ++L
Sbjct: 61 KSLEERVEEWDKSG------------PRIGDVFLKLAPFFKIYSEYCSNHPDALELLKKL 108
Query: 712 NEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHL 770
+ N+ QEFL + LES L+KP+QR+ KYPLLL++L T ++ L
Sbjct: 109 KKFNKFFQEFLEKAE-SECGRLKLESLLLKPVQRLTKYPLLLKELLKHTPDGHEDREDL 166
>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain. Guanine nucleotide exchange
factor for Rho/Rac/Cdc42-like GTPases Also called
Dbl-homologous (DH) domain. It appears that pfam00169
domains invariably occur C-terminal to RhoGEF/DH
domains.
Length = 179
Score = 151 bits (384), Expect = 8e-42
Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Query: 597 VIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLV 656
VI EL++TER+YV++L L+E +L+PL++ LS EI +F NI EI+ ++FL
Sbjct: 1 VIQELLQTERSYVRDLKILVEVFLKPLRESPILSEEEIKTIFSNIEEILELHQEFL---- 56
Query: 657 EALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPN-EGN 715
E LE + Q IG FL + FK+YS++C+++ +A ++L + N
Sbjct: 57 EELEERLEEWPDIQ---------RIGDIFLKFAPFFKVYSTYCSNYPRALELLKKLRKKN 107
Query: 716 QALQEFL-SSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDP 762
+FL L S+LIKP+QRI +YPLLL++L T P
Sbjct: 108 PRFAKFLKECEASPLCRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPP 155
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 137 bits (348), Expect = 6e-34
Identities = 106/380 (27%), Positives = 161/380 (42%), Gaps = 80/380 (21%)
Query: 866 FLKKPSYSAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKMRLGS-----------LGV 912
FL+ P +A N AF+IP+ + +L GIPL +E +G R G L
Sbjct: 24 FLRFPVQAAQNGGGAFMIPYFIAFLLVGIPLMWVEWAMG---RYGGKHGHGTTPMIFLLA 80
Query: 913 WNTIHPW--LGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTI 970
I LG +G + + V YY I +W Y F S + P
Sbjct: 81 KRNI-FAKILGAIGFA---IPLLVNSYYVYIESWTLGYAFKSLTGGYPEPI--------- 127
Query: 971 IPECELSSETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRV 1030
A F+Y + + ++ L L + I++ V KGI++ ++
Sbjct: 128 ------LRPFAEFFYSYI-----GAKPSSFAYIFFLITLALNFFILYRGVSKGIEAFAKI 176
Query: 1031 VYFTSMFPYIVL--TIFFIRGITLP-------GAGAGLVHMYTPKVEKLLDPNVWLDAAT 1081
P + + I IR +TL A GL ++ P KL DP VWL AA
Sbjct: 177 -----AMPLLYVFAIILAIRVLTLGTPVNPDWTALKGLNFLWNPDFSKLKDPKVWLAAAG 231
Query: 1082 QVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFA--ILGFKAMS 1139
Q+F++ L G +I + SY + ++ D+++ ++LTA AS+ FA ILG +
Sbjct: 232 QIFFTLSLGMGIIINYASYLRKDD----DIVL----SSLTA--ASLNEFAEVILGGSIVI 281
Query: 1140 NAAEG-TGLAFIAAEGT-GLAFI----VFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIG 1193
AA G +A GT GL FI VF+Q +PG F+ ++F +L G+ S I
Sbjct: 282 PAAFAFLGAVAVAKAGTFGLGFIALPNVFSQ----MPGGQFFGFLWFFLLFFAGITSSIA 337
Query: 1194 ILEGVLCTIFDIEIFKRIRK 1213
+L+ F E K RK
Sbjct: 338 MLQ--PLIAFLEEELKWSRK 355
Score = 48.4 bits (116), Expect = 2e-05
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 778 SFLVGLIFTTGAGEYW--------LKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTND 829
+ + + L D + GTI LV++ LIE++ +I+G +K +
Sbjct: 358 ALWIFALVIIVGLPVAFEFIDLKALDELDFWVGTILLVVLGLIEVIVFAWIFGAKKGWEE 417
Query: 830 IYEMTGYKPGWYWQITWRFLGPAIMSCILVSSII 863
I K +++ +++ PA + +LV I
Sbjct: 418 INRGALIKVPRFFKYVIKYITPAFLIVVLVFFTI 451
>gnl|CDD|176413 cd01818, TIAM1_RBD, Ubiquitin domain of Tiam1 guanine nucleotide
exchange factor. Tiam1 (T lymphoma invasion and
metastasis 1) a guanine nucleotide exchange factor that
activates Rac, is an important regulator of Rho GTPase
functions in tumor cells including regulation of cell
shape and invasiveness in epithelial cells and
fibroblasts. TIAM1 has an RBD (Ras-binding domain)
similar to that of Raf kinase as well as PH (pleckstrin
homology), PDZ, and RhoGEF domains.
Length = 77
Score = 110 bits (277), Expect = 6e-29
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 278 KVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREMEDHNYFVPPRGD 337
V LP+NQ YL+ M+VE+FL +AC RK L+PMEH++R+K R ME+H YF P
Sbjct: 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLR-MENHEYFYIPN-P 60
Query: 338 LIETYLSTHEVVEVCAK 354
L + Y ++ +E+C K
Sbjct: 61 LEDIYDLLYKEIEICPK 77
>gnl|CDD|176358 cd01760, RBD, Ubiquitin-like domain of RBD-like S/T kinases. The
ras-binding domain (RBD) of the serine/threonine kinase
raf is structurally quite similar to the beta-grasp fold
of ubiquitin. A raf-like RBD is also present in RGS12
and other members of a family of GTPase activating
proteins and TIAM1, a guanine nucleotide exchange
protein.
Length = 72
Score = 72.6 bits (179), Expect = 1e-15
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 277 VKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREMEDHNYFVPPRG 336
+V LP Q V ++ M+V + LA AC ++ LNP V + E P
Sbjct: 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDE-------KKPLD 54
Query: 337 DLIETYLSTHEVVEVCAK 354
++ E +EV
Sbjct: 55 LDTDSSSLAGEELEVEPL 72
>gnl|CDD|215766 pfam00169, PH, PH domain. PH stands for pleckstrin homology.
Length = 101
Score = 73.3 bits (180), Expect = 2e-15
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WLL+K ++ WK + L LL+Y + + PK I + G + +
Sbjct: 6 WLLKKGS----GGRKSWKKRYFVLFDGVLLYYKDSKKS----SSRPKGSIPLSGCQVTKV 57
Query: 67 PEHP--KRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACA 108
P+ KR F + T + +L QA + E + WV +I SA
Sbjct: 58 PDSEDGKRKNCFEIRTGDRETFLLQAESEEERKEWVKAIRSAIR 101
Score = 33.6 bits (77), Expect = 0.17
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 25/115 (21%)
Query: 1283 KIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVLVPVTEVQ 1342
FV V+ K+ + + G +P++ Q
Sbjct: 11 GSGGRKSWKKRYFVLFDGVLLYYKDSKKSSSRPKGS-----------------IPLSGCQ 53
Query: 1343 VR-ASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQIIR 1396
V ++D +E+ + ++L + E R ++K IR IR
Sbjct: 54 VTKVPDSEDGKRKNCFEIRT-------GDRETFLLQAESEEERKEWVKAIRSAIR 101
>gnl|CDD|202147 pfam02196, RBD, Raf-like Ras-binding domain.
Length = 71
Score = 71.2 bits (175), Expect = 3e-15
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 275 KSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVR---VKKRREMEDHNYF 331
K+ +V LP NQ + V ++ MTV + LA AC R+ LNP VR KK +++
Sbjct: 1 KTCRVHLPNNQRSVVEVRPGMTVRDALAKACKRRGLNPSACAVRLSGEKKPLDLDTDISS 60
Query: 332 VPPRGDLIETY 342
+P +E
Sbjct: 61 LPGEELRVELL 71
>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain. Domain commonly found
in eukaryotic signalling proteins. The domain family
possesses multiple functions including the abilities to
bind inositol phosphates, and various proteins. PH
domains have been found to possess inserted domains
(such as in PLC gamma, syntrophins) and to be inserted
within other domains. Mutations in Brutons tyrosine
kinase (Btk) within its PH domain cause X-linked
agammaglobulinaemia (XLA) in patients. Point mutations
cluster into the positively charged end of the molecule
around the predicted binding site for
phosphatidylinositol lipids.
Length = 102
Score = 68.7 bits (168), Expect = 8e-14
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL +K K+ WK + L +TLL+Y + PK I + G ++
Sbjct: 6 WLYKKSGG----GKKSWKKRYFVLFNSTLLYYKSKKDKK---SYKPKGSIDLSGCTVREA 58
Query: 67 PE--HPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACA 108
P+ K+ + F + T+ L QA + E E WV ++ A A
Sbjct: 59 PDPDSSKKPHCFEIKTSDRKTLLLQAESEEEREKWVEALRKAIA 102
>gnl|CDD|128731 smart00455, RBD, Raf-like Ras-binding domain.
Length = 70
Score = 65.4 bits (160), Expect = 4e-13
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 277 VKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVR---VKKRREMEDHNYFVP 333
KV LP+NQ V ++ TV + LA A ++ LNP VR KK ++ +
Sbjct: 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQPISSLD 61
Query: 334 PRGDLIETY 342
+ ++E
Sbjct: 62 GQELVVEEL 70
>gnl|CDD|241449 cd13295, PH_EFA6, Exchange Factor for ARF6 Pleckstrin homology (PH)
domain. EFA6 (also called PSD/pleckstrin and Sec7
domain containing) is an guanine nucleotide exchange
factor for ADP ribosylation factor 6 (ARF6), which is
involved in membrane recycling. EFA6 has four
structurally related polypeptides: EFA6A, EFA6B, EFA6C
and EFA6D. It consists of a N-terminal proline rich
region (PR), a SEC7 domain, a PH domain, a PR, a
coiled-coil region, and a C-terminal PR. The EFA6 PH
domain regulates its association with the plasma
membrane. EFA6 activates Arf6 through its Sec7 catalytic
domain and modulates this activity through its
C-terminal domain, which rearranges the actin
cytoskeleton in fibroblastic cell lines. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 126
Score = 65.8 bits (161), Expect = 2e-12
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 5 KKWLLRKKHQ-IELAR----KRGWKGYWVCLKGTTLLFYPCDSR-EGRSVDAAPKHLIIV 58
K +L+RK H + + KRGWK ++ LKG L + + + + + ++ I V
Sbjct: 9 KGYLMRKCHADPDGKKTPRGKRGWKMFYATLKGLVLYLHKDEYGCKKQLSYESLRNAISV 68
Query: 59 DGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAA 109
++ + ++ K+ ++F L TA +LFQA E+++W+ +I+ AA
Sbjct: 69 HHSLAEKATDYTKKPHVFRLQTADWREFLFQASDTEEMQSWIEAINLVAAA 119
>gnl|CDD|241307 cd10571, PH_beta_spectrin, Beta-spectrin pleckstrin homology (PH)
domain. Beta spectrin binds actin and functions as a
major component of the cytoskeleton underlying cellular
membranes. Beta spectrin consists of multiple spectrin
repeats followed by a PH domain, which binds to
inositol-1,4,5-trisphosphate. The PH domain of
beta-spectrin is thought to play a role in the
association of spectrin with the plasma membrane of
cells. PH domains have diverse functions, but in general
are involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 105
Score = 60.7 bits (148), Expect = 6e-11
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 8 LLRKKHQIELARKRG----WKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIM 63
L RK H++E K+ WK + LKG L FY D + S A + + + GA+
Sbjct: 5 LERK-HELESGGKKASNRSWKKVYCVLKGQELSFYK-DQKAAASESYAGEPPLNLSGAVC 62
Query: 64 QPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+ ++ K+ ++F L + G YLFQA + E+ +WV + +A
Sbjct: 63 EVASDYKKKKHVFRLRLSDGSEYLFQAKDEEEMNDWVQKLQAA 105
>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH)
domain, repeat 1. Pleckstrin is a protein found in
platelets. This name is derived from platelet and
leukocyte C kinase substrate and the KSTR string of
amino acids. Pleckstrin 2 contains two PH domains and a
DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike
pleckstrin 1, pleckstrin 2 does not contain obvious
sites of PKC phosphorylation. Pleckstrin 2 plays a role
in actin rearrangement, large lamellipodia and
peripheral ruffle formation, and may help orchestrate
cytoskeletal arrangement. The PH domains of pleckstrin 2
are thought to contribute to lamellipodia formation.
This cd contains the first PH domain repeat. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 108
Score = 54.7 bits (132), Expect = 6e-09
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 20 KRG-----WKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGA-IMQPIPEHPKRD 73
K+G WK W L L +Y + ++ D++PK +I++ G I P E+ KR
Sbjct: 11 KKGHVVNNWKARWFVLLEDKLEYY-----KKKT-DSSPKGMILLKGCTITSPCLEYEKRP 64
Query: 74 YIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+F L+TA G + QA + E + W I A
Sbjct: 65 LVFKLTTAKGQDHFLQACSREERDAWAKDITKA 97
>gnl|CDD|241284 cd01253, PH_ARHGAP21-like, ARHGAP21 and related proteins pleckstrin
homology (PH) domain. ARHGAP family genes encode
Rho/Rac/Cdc42-like GTPase activating proteins with a
RhoGAP domain. These proteins functions as a
GTPase-activating protein (GAP) for RHOA and CDC42.
ARHGAP21 controls the Arp2/3 complex and F-actin
dynamics at the Golgi complex by regulating the activity
of the small GTPase Cdc42. It is recruited to the Golgi
by to GTPase, ARF1, through its PH domain and its
helical motif. It is also required for CTNNA1
recruitment to adherens junctions. ARHGAP21 and it
related proteins all contains a PH domain and a RhoGAP
domain. Some of the members have additional N-terminal
domains including PDZ, SH3, and SPEC. The ARHGAP21 PH
domain interacts with the GTPbound forms of both ARF1
and ARF6 ARF-binding domain/ArfBD. The members here
include: ARHGAP15, ARHGAP21, and ARHGAP23. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 113
Score = 54.2 bits (131), Expect = 1e-08
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 7 WLLRKKHQIELARK---RGWKGYWVCLKGTTLLFYPCDSREG-RSVDAAPK--HLIIVDG 60
WL K+ +E ++ R WK W L+G +L Y D RE ++ AA I +
Sbjct: 5 WLHFKQSVLEKGKRASDRSWKQVWAVLRGHSLYLYK-DKRETSPALSAAEDSEQRIDIRS 63
Query: 61 AIMQPIPE-HPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAA 109
I+ I + KR +F L+T+ G YLFQA + ++ W+ +I A
Sbjct: 64 CIVD-IAYSYTKRKNVFRLTTSDGSEYLFQAEDRDDMLGWIKAIQENSNA 112
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 59.1 bits (143), Expect = 2e-08
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 42/230 (18%)
Query: 584 PSRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPL---------KKETFLSGAEI 634
P +++ K + I E+I TER +VK+L L + +++PL + F I
Sbjct: 479 PKQEI----KRQEAIYEVIYTERDFVKDLEYLRDTWIKPLEESNIIPENARRNF-----I 529
Query: 635 NALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKL 694
+F NI EI A + L +AL N Q I+ I FL YV F+
Sbjct: 530 KHVFANINEIYAVNSKLL----KALTNR-------QCLS--PIVNGIADIFLDYVPKFEP 576
Query: 695 YSSFCASH------SKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILK 748
+ + AS + +K ++PN E R+ L+ YL KP R+ +
Sbjct: 577 FIKYGASQPYAKYEFEREKSVNPNFAR-FDHEVERLDESRKLE---LDGYLTKPTTRLAR 632
Query: 749 YPLLLQQLCNLTDPHCDEHLHLVGVVCLI-SFLVGLIFTTGAGEYWLKLF 797
YPLLL+++ TDP + + V+ ++ FL L F +G E LF
Sbjct: 633 YPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLF 682
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 56.7 bits (137), Expect = 6e-08
Identities = 36/202 (17%), Positives = 77/202 (38%), Gaps = 19/202 (9%)
Query: 991 VSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGI 1050
P I++ L L ++ + ++GI++S ++ ++ I+L IF I G+
Sbjct: 121 FPGPGLLSIGPLLIILIALALIALL-TLLNLRGIKASAKINSIITILKIIILLIFIILGL 179
Query: 1051 TLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQ-------P 1103
G G + N + + + LAF + F + P
Sbjct: 180 FAFGFSNGNL---------FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNP 230
Query: 1104 NNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFT 1163
R +I+ + + I ++V+ +L ++ +A LA A G G +
Sbjct: 231 KRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIII 290
Query: 1164 QAIVELPGAPFWSIIFFMMLLS 1185
+ L + F S++ +++ +S
Sbjct: 291 AILALL--SLFGSLLAWILAVS 310
Score = 30.5 bits (69), Expect = 8.2
Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 30/180 (16%)
Query: 999 GSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVY-------FTSMF---------PYIVL 1042
G W ++ +LA + +F ++ I + RV+Y F P I L
Sbjct: 281 GGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIAL 340
Query: 1043 TIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQ 1102
+ I + L L + + L+ A+ ++ L +L+ +
Sbjct: 341 ILTGIISLIL----LLLFPLSSIAFNALV-----SLASVAFLIAYLLVALALLVL-RRKK 390
Query: 1103 PNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVF 1162
P+ + + + L + ++++A+ + A G + +V+
Sbjct: 391 PDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPL----LLGVILIAGGIIIYLLVY 446
>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan
signaling molecules, often in tandem arrangements. May
be responsible for specific protein-protein
interactions, as most PDZ domains bind C-terminal
polypeptides, and binding to internal (non-C-terminal)
polypeptides and even to lipids has been demonstrated.
In this subfamily of PDZ domains an N-terminal
beta-strand forms the peptide-binding groove base, a
circular permutation with respect to PDZ domains found
in proteases.
Length = 82
Score = 48.7 bits (117), Expect = 4e-07
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVI 415
+ V L++ GFS+ + +VSRVE A GL GD I+ +
Sbjct: 1 VRTVTLRKDPGGG-LGFSLRGG------KDSGGGIFVSRVEPGGPAERGGLRVGDRILEV 53
Query: 416 NGAIVSDLDMMYLESVLQE 434
NG V L +L+
Sbjct: 54 NGVSVEGLTHEEAVELLKN 72
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic ions
or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine neurotransmitters
serotonin, dopamine, and norepinephrine, and the amino
acid neurotransmitters GABA and glycine. NCS1s are
essential components of salvage pathways for nucleobases
and related metabolites; their known substrates include
allantoin, uracil, thiamine, and nicotinamide riboside.
Members of this superfamily are important in human
physiology and disease. They contain a functional core of
10 transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 53.4 bits (128), Expect = 6e-07
Identities = 29/208 (13%), Positives = 68/208 (32%), Gaps = 6/208 (2%)
Query: 1004 WIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGIT-LPGAGAGLVHM 1062
I++ L+A + + + I + + + ++ + I G +
Sbjct: 117 SILILALIAVVYSIYGGLSAIVWTDVIAVPFLVLGGVMTVYMAVSFIGGFAGVSKMVDAA 176
Query: 1063 YTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTA 1122
L P + + + +G + + + V + + A
Sbjct: 177 PGHFEMILNLPGIAVAIGGLWVANL-YYWGFIQYIIQRTLADKS-VSEAQKGIVFAAFLM 234
Query: 1123 IYASVVVFAILGFKAMSNAAEGTGLAFIAAEGT-GLAFIVFTQAIVELPGAPFWSIIFFM 1181
+ A ++V I G A ++ +A + + A + LPG+ + F
Sbjct: 235 LIAPILVGLI-GIAAYVITSDPQLMASLGNLPSAANADKAYPWLTQFLPGSVGVKGLVFA 293
Query: 1182 MLLSLGLGSQIGILEGVLCTIFDIEIFK 1209
L + + S +L TI ++I+K
Sbjct: 294 ALAAAIVSSLAAMLNSTA-TILTMDIYK 320
>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2. Also
called DHR (Dlg homologous region) or GLGF (relatively
well conserved tetrapeptide in these domains). Some PDZs
have been shown to bind C-terminal polypeptides; others
appear to bind internal (non-C-terminal) polypeptides.
Different PDZs possess different binding specificities.
Length = 85
Score = 46.2 bits (110), Expect = 4e-06
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 355 ILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMV 414
VEL++ GFS+ + + VS V S A GL GD I+
Sbjct: 1 EPRLVELEKGGGG--LGFSLVGG------KDEGGGVVVSSVVPGSPAAKAGLRVGDVILE 52
Query: 415 INGAIVSDLDMMYLESVLQE 434
+NG V L + +L++
Sbjct: 53 VNGTSVEGLTHLEAVDLLKK 72
>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 92
Score = 45.8 bits (108), Expect = 7e-06
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL ++ + + WK W L LL+Y + + PK LI + + +
Sbjct: 4 WLKKRGGKG----LKSWKKRWFVLFDDVLLYY----KSKKDSSKKPKGLIPLSDGLEVEL 55
Query: 67 PEHPKRDYIFCLSTAFGD-AYLFQAPCQVELENWVNS 102
+ F L T Y QA + E E W+ +
Sbjct: 56 VSSSGKPNCFELVTPDRGRTYYLQAESEEEREEWLEA 92
>gnl|CDD|238490 cd00990, PDZ_glycyl_aminopeptidase, PDZ domain associated with
archaeal and bacterial M61 glycyl-aminopeptidases. May
be responsible for substrate recognition and/or binding,
as most PDZ domains bind C-terminal polypeptides, and
binding to internal (non-C-terminal) polypeptides and
even to lipids has been demonstrated. In this subfamily
of protease-associated PDZ domains a C-terminal
beta-strand is presumed to form the peptide-binding
groove base, a circular permutation with respect to PDZ
domains found in Eumetazoan signaling proteins.
Length = 80
Score = 43.6 bits (103), Expect = 3e-05
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 385 QDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLCMMMRS 444
++E V+ V D S A GL+ GDE++ +NG V L E + + L +
Sbjct: 9 KEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQDRLKEYQAGDPVELTVFRDD 68
Query: 445 SRTEPPETAGSG 456
E P T
Sbjct: 69 RLIEVPLTLADP 80
>gnl|CDD|241464 cd13310, PH_RalGPS1_2, Ral GEF with PH domain and SH3 binding motif
1 and 2 Pleckstrin homology (PH) domain. RalGPS1 (also
called Ral GEF with PH domain and SH3 binding motif
1;RALGEF2/ Ral guanine nucleotide exchange factor 2;
RalA exchange factor RalGPS1; Ral guanine nucleotide
exchange factor RalGPS1A2; ras-specific guanine
nucleotide-releasing factor RalGPS1) and RalGPS2 (also
called Ral GEF with PH domain and SH3 binding motif 2;
Ral-A exchange factor RalGPS2; ras-specific guanine
nucleotide-releasing factor RalGPS22). They activate
small GTPase Ral proteins such as RalA and RalB by
stimulating the exchange of Ral bound GDP to GTP,
thereby regulating various downstream cellular
processes. Structurally they contain an N-terminal
Cdc25-like catalytic domain, followed by a PXXP motif
and a C-terminal PH domain. The Cdc25-like catalytic
domain interacts with Ral and its PH domain ensures the
correct membrane localization. Its PXXP motif is thought
to interact with the SH3 domain of Grb2. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 116
Score = 40.7 bits (96), Expect = 6e-04
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 9 LRKKHQIELARKRG-------WKGYWVCLKGTTLLFYPCDSREG--RS-VDAAPKHLIIV 58
LR+K K G W+ YWV L GT+L++Y S G RS + P ++ +
Sbjct: 6 LRRK----TVLKEGRKPTVSSWQRYWVQLWGTSLVYYAPKSLRGNERSDFKSEPCKIVSI 61
Query: 59 DGAIMQPIPEHPKRDYIFCLS-TAFGDAYLFQAPCQVELENWVNSIHSACA 108
G ++ P+ P+ F L+ G+ Y F+A + W+ + AC
Sbjct: 62 SGWMVVL-PDDPEHPDSFQLTDPEKGNVYKFRAGSRSNALLWLKHLKDACK 111
>gnl|CDD|241397 cd13243, PH_PLEKHG1_G2_G3, Pleckstrin homology domain-containing
family G members 1, 2, and 3 pleckstrin homology (PH)
domain. PLEKHG1 (also called ARHGEF41), PLEKHG2 (also
called ARHGEF42 or CLG/common-site lymphoma/leukemia
guanine nucleotide exchange factor2), and PLEKHG3 (also
called ARHGEF43) have RhoGEF DH/double-homology domains
in tandem with a PH domain which is involved in
phospholipid binding. They function as a guanine
nucleotide exchange factor (GEF) and are involved in the
regulation of Rho protein signal transduction. Mutations
in PLEKHG1 have been associated panic disorder (PD), an
anxiety disorder characterized by panic attacks and
anticipatory anxiety. PH domains have diverse functions,
but in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 147
Score = 39.6 bits (93), Expect = 0.003
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 1214 PILTEALKGMEKVAEHINEMQRIHEE 1239
++ +A+ M +VA HIN+M+R HE
Sbjct: 2 EVVEDAIDTMTQVAWHINDMKRKHEH 27
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 41.5 bits (98), Expect = 0.003
Identities = 47/337 (13%), Positives = 98/337 (29%), Gaps = 73/337 (21%)
Query: 869 KPSYSAWNRAFLIPFMVMLILEGIPLFLI--ELGIGQKMRLGSLGVW--NTIHPWLGGVG 924
P ++ A ++ + ++ + + L+ EL R G + VW N + +
Sbjct: 22 TPLIASAGAAAILWGWIAALIFSLAVALVYAELS-SAFPRNGGIYVWLKNAFGKPVAFI- 79
Query: 925 ISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFW 984
W Y L + SSS+ + +
Sbjct: 80 --------------AAWFNWLAYILGLASSSSV------------------AAQYLLSAF 107
Query: 985 YRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTI 1044
P++ + I + +L II I ++GI+ S ++ + ++ I
Sbjct: 108 -------FPDLVGNTWLTYGIAIAIL---IIFALINIRGIKESAKIQNILGIVKLLLPLI 157
Query: 1045 FFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQ-- 1102
I G L + + VF + S F S
Sbjct: 158 LII------LLGLVLALGGGFNLLPNSWTTFFPSGWPGVFLGLLIVLWSFGGFESAANVS 211
Query: 1103 ---PNNNCVRDV-----IMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAE- 1153
RDV I + I + + +++ ++ ++ + +A + E
Sbjct: 212 EEVKK----RDVPKALFIGLLIV-GVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEA 266
Query: 1154 ---GTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLG 1187
G +V A+ L + +L +L
Sbjct: 267 VGGPWGAIIVVILLALSLLGAVNTAIVASSRVLEALA 303
>gnl|CDD|241387 cd13233, PH_ARHGAP9-like, Beta-spectrin pleckstrin homology (PH)
domain. ARHGAP family genes encode Rho/Rac/Cdc42-like
GTPase activating proteins with RhoGAP domain. The
ARHGAP members here all have a PH domain upstream of
their C-terminal RhoGAP domain. Some have additional
N-terminal SH3 and WW domains. The members here include:
ARHGAP9, ARHGAP12, ARHGAP15, and ARHGAP27. ARHGAP27 and
ARHGAP12 shared the common-domain structure, consisting
of SH3, WW, PH, and RhoGAP domains. The PH domain of
ArhGAP9 employs a non-canonical phosphoinositide binding
mechanism, a variation of the spectrin-
Ins(4,5)P2-binding mode, that gives rise to a unique PI
binding profile, namely a preference for both PI(4,5)P2
and the PI 3-kinase products PI(3,4,5)P3 and PI(3,4)P2.
This lipid binding mechanism is also employed by the PH
domain of Tiam1 and Slm1. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 110
Score = 38.4 bits (90), Expect = 0.004
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 19 RKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKH----LIIVD--GAIMQPIPEHPKR 72
++ W WV L G+ LLFY ++ +S A+ VD GA ++ E R
Sbjct: 18 LRKNWSTSWVVLTGSHLLFY----KDQKSAAASGGPQSKPESSVDLRGASIEWAKEKSSR 73
Query: 73 DYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+F LST G YL Q+ E++ W ++I
Sbjct: 74 KNVFQLSTVTGTEYLLQSDNDTEIQEWFDAIKRV 107
>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH)
domain, repeat 1. The functions of these fungal
proteins are unknown, but they all contain 2 PH domains.
This cd represents the first PH repeat. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 106
Score = 38.0 bits (89), Expect = 0.004
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLI-IVDGAIMQP 65
WLL++ + + WK W L+ L +Y D +E + +I + + + P
Sbjct: 11 WLLKRSR-----KTKTWKKRWFVLRPCQLSYYK-DEKE-----YKLRRVINLSELTAVAP 59
Query: 66 IPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+ + KR +F + T Y FQA + + WV +I
Sbjct: 60 LKDK-KRKNVFAIYTP-SKNYHFQASSEKDANEWVEAIREE 98
>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat
2. MyoX, a MyTH-FERM myosin, is a molecular motor that
has crucial functions in the transport and/or tethering
of integrins in the actin-based extensions known as
filopodia, microtubule binding, and in netrin-mediated
axon guidance. It functions as a dimer. MyoX walks on
bundles of actin, rather than single filaments, unlike
the other unconventional myosins. MyoX is present in
organisms ranging from humans to choanoflagellates, but
not in Drosophila and Caenorhabditis elegans.MyoX
consists of a N-terminal motor/head region, a neck made
of 3 IQ motifs, and a tail consisting of a coiled-coil
domain, a PEST region, 3 PH domains, a myosin tail
homology 4 (MyTH4), and a FERM domain at its very
C-terminus. The first PH domain in the MyoX tail is a
split-PH domain, interupted by the second PH domain such
that PH 1a and PH 1b flanks PH 2. The third PH domain
(PH 3) follows the PH 1b domain. This cd contains the
second PH repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 111
Score = 37.8 bits (88), Expect = 0.006
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL +K ++ WK W L+ T L +Y D EG A I + + + +
Sbjct: 12 WLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYENDQ-EG----AKALGTIDI-RSAKEIV 65
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAA 110
PK + F ++T Y F A + W + + +A
Sbjct: 66 DNTPK-ENGFDITTP-SRTYHFVAESPEDASQWFSVLTRVHSAT 107
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 39.5 bits (92), Expect = 0.011
Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 35/236 (14%)
Query: 1001 PKWWIVLCLLLAWIIVFFIVMKGIQ----SSGRVVYFTSMFPYIVLTIFFIRG-----IT 1051
P ++L LL + F ++ ++ S ++ +L + + G +
Sbjct: 68 PWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ 127
Query: 1052 LPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYS---FGLAFGSLIAFGSYNQPNNNCV 1108
+ G L + + L S LA + + + Y
Sbjct: 128 ILGILLALAGVLL----------ILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS 177
Query: 1109 R-DVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIV 1167
R + +++ L +++F + GF A + L ++ TGLA++++ A+
Sbjct: 178 RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALR 237
Query: 1168 ELPGA---------PFWSIIFFMMLL--SLGLGSQIGILEGVLCTIFDIEIFKRIR 1212
L + P ++ + ++LL L +G V+ + + R R
Sbjct: 238 LLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAA-LVVLGVLLASLRARRR 292
>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin
homology (PH) domain. RhoGAP2 (also called RhoGap22 or
ArhGap22) are involved in cell polarity, cell morphology
and cytoskeletal organization. They activate a GTPase
belonging to the RAS superfamily of small GTP-binding
proteins. The encoded protein is insulin-responsive, is
dependent on the kinase Akt, and requires the
Akt-dependent 14-3-3 binding protein which binds
sequentially to two serine residues resulting in
regulation of cell motility. Members here contain an
N-terminal PH domain followed by a RhoGAP domain and
either a BAR or TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) domain. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 116
Score = 36.8 bits (85), Expect = 0.014
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAI- 62
+K L+K+ I + W+ W L+G L +Y D E + P+ I + G+
Sbjct: 4 LKAGWLKKQRSI----MKNWQQRWFVLRGDQLFYYK-DEEETK-----PQGCISLQGSQV 53
Query: 63 --MQPIPEHPKRDYIFCLSTAFGD---------AYLFQAPCQVELENWVNSIHSACAAAF 111
+ P PE P + L GD A+L A Q ++E+WV +I A F
Sbjct: 54 NELPPNPEEPGKHLFEILPGGAGDREKVPMNHEAFLLMANSQSDMEDWVKAIRRVIWAPF 113
>gnl|CDD|221739 pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 230
Score = 38.5 bits (90), Expect = 0.015
Identities = 42/249 (16%), Positives = 79/249 (31%), Gaps = 44/249 (17%)
Query: 793 WLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYKPGWYWQITWRFLGPA 852
LKL + I L+L L+ +LA+ ++G T + P
Sbjct: 4 LLKLKRTKIFLILLILPLLLALLAL-LLFGVNGDTGLSPGSLLLSSFSFLSA---LFLP- 58
Query: 853 IMSCILVSSIICR----------FLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIELGIG 902
++ IL S ++ R S A L+ +++ +L + L L+ L G
Sbjct: 59 LLIAILASLLVSREFKNGTIKLLLSLPISRGKIFLAKLLVLLILSLLASLLLLLLSLIAG 118
Query: 903 QKMRLGSLGVWNTIHPWLGGVGIS-----SCLVTFFVALYYN----VIITWCFYYLFNSF 953
+ + + L + +S L+ F++L I L
Sbjct: 119 LLLGGSGFSLSLLLGALLLLLLLSLLALLLILLILFLSLLLRNSAVAIGIGLLLILLGLL 178
Query: 954 SSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIES---PGSPKWWIVLCLL 1010
SLP + P + + + +S ++ I L ++
Sbjct: 179 LGSLPLWL--------LFP---------WSYLPLIVLLSLSLNGTLLSSGLSIIIALIVI 221
Query: 1011 LAWIIVFFI 1019
L I+F I
Sbjct: 222 LILFIIFLI 230
>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region)
or GLGF (after a conserved sequence motif). Many PDZ
domains bind C-terminal polypeptides, though binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. Heterodimerization through
PDZ-PDZ domain interactions adds to the domain's
versatility, and PDZ domain-mediated interactions may be
modulated dynamically through target phosphorylation.
Some PDZ domains play a role in scaffolding
supramolecular complexes. PDZ domains are found in
diverse signaling proteins in bacteria, archebacteria,
and eurkayotes. This CD contains two distinct structural
subgroups with either a N- or C-terminal beta-strand
forming the peptide-binding groove base. The circular
permutation placing the strand on the N-terminus appears
to be found in Eumetazoa only, while the C-terminal
variant is found in all three kingdoms of life, and
seems to co-occur with protease domains. PDZ domains
have been named after PSD95(post synaptic density
protein), DlgA (Drosophila disc large tumor suppressor),
and ZO1, a mammalian tight junction protein.
Length = 70
Score = 35.4 bits (82), Expect = 0.017
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEE 435
V VE S A GL GD I+ +NG V +L + + +L++E
Sbjct: 15 VVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKE 60
>gnl|CDD|216670 pfam01733, Nucleoside_tran, Nucleoside transporter. This is a family
of nucleoside transporters. In mammalian cells nucleoside
transporters transport nucleoside across the plasma
membrane and are essential for nucleotide synthesis via
the salvage pathways for cells that lack their own de
novo synthesis pathways. Also in this family is mouse and
human nucleolar protein HNP36, a protein of unknown
function; although it has been hypothesised to be a
plasma membrane nucleoside transporter.
Length = 305
Score = 38.2 bits (89), Expect = 0.027
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 998 PGSPKWWIVL--CLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGA 1055
PG W+ + L L +I +F + QS V+F S + +I+L F + G
Sbjct: 204 PGQDPRWLPVLSILRLLFIPLFLLCNYKPQSRALPVFFESDWLFIILMALF--AFS-NGY 260
Query: 1056 GAGLVHMYTPKVEKLLDPNVWLDAA--TQVFYSFGLAFGSLIAF 1097
+ L MY PK + P+ A T F GLA GS+ +F
Sbjct: 261 LSSLAMMYAPKQ---VPPHEAETAGMITVFFLILGLALGSVFSF 301
>gnl|CDD|241389 cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstrin
domain-containing protein 1 and related proteins
Pleckstrin Homology (PH) domain, repeat 2. Members here
include FARP1 (also called Chondrocyte-derived
ezrin-like protein; PH domain-containing family C member
2), FARP2 (also called FIR/FERM domain including RhoGEF;
FGD1-related Cdc42-GEF/FRG), and FARP6 (also called Zinc
finger FYVE domain-containing protein 24). They are
members of the Dbl family guanine nucleotide exchange
factors (GEFs) which are upstream positive regulators of
Rho GTPases. Little is known about FARP1 and FARP6,
though FARP1 has increased expression in differentiated
chondrocytes. FARP2 is thought to regulate neurite
remodeling by mediating the signaling pathways from
membrane proteins to Rac. It is found in brain, lung,
and testis, as well as embryonic hippocampal and
cortical neurons. FARP1 and FARP2 are composed of a
N-terminal FERM domain, a proline-rich (PR) domain,
Dbl-homology (DH), and two C-terminal PH domains. FARP6
is composed of Dbl-homology (DH), and two C-terminal PH
domains separated by a FYVE domain. This hierarchy
contains the second PH repeat. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 113
Score = 35.7 bits (83), Expect = 0.032
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 7 WLLRK-KHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAP-KHLIIVDGAIMQ 64
+LLRK K+ GW+ WV L FY + + D P L ++ ++
Sbjct: 23 YLLRKFKNS------NGWQKLWVVFTNFCLFFY----KSHQ--DEFPLASLPLLGYSVGL 70
Query: 65 PIPE-HPKRDYIFCLSTAFGD-AYLFQAPCQVELENWVNSIHSA 106
P + +DY+F L F Y F+A + E W+ I SA
Sbjct: 71 PSEADNIDKDYVFKLQ--FKSHVYFFRAESEYTFERWMEVIRSA 112
>gnl|CDD|233677 TIGR01995, PTS-II-ABC-beta, PTS system, beta-glucoside-specific
IIABC component. This model represents a family of PTS
enzyme II proteins in which all three domains are found
in the same polypeptide chain and which appear to have a
broad specificity for beta-glucosides including salicin
(beta-D-glucose-1-salicylate) and arbutin
(Hydroquinone-O-beta-D-glucopyranoside). These are
distinct from the closely related sucrose-specific and
trehalose-specific PTS transporters.
Length = 610
Score = 38.5 bits (90), Expect = 0.034
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 851 PAIMSCILVSSIICRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIELG-----IGQKM 905
P I+ + + S + +FLKK A + FL P +VMLI +PL L+ +G G+ +
Sbjct: 213 PVIL-AVWLMSYVEKFLKKVIPGAL-KNFLTPLLVMLIT--VPLTLLIIGPLGNYAGEGI 268
Query: 906 RLGSLGVWNTIHPWLGGV---GISSCLVTF-----FVALYYNVIITWCFYYLFNSFS 954
G L + + PWL G + LV F + + N I T F L S
Sbjct: 269 SSGILFL-YEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNIATQGFDPLILPAS 324
>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase
suppressor of ras) (CNK) pleckstrin homology (PH)
domain. CNK family members function as protein
scaffolds, regulating the activity and the subcellular
localization of RAS activated RAF. There is a single CNK
protein present in Drosophila and Caenorhabditis elegans
in contrast to mammals which have 3 CNK proteins (CNK1,
CNK2, and CNK3). All of the CNK members contain a
sterile a motif (SAM), a conserved region in CNK (CRIC)
domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with
the exception of CNK3, a PH domain. A CNK2 splice
variant CNK2A also has a PDZ domain-binding motif at its
C terminus and Drosophila CNK (D-CNK) also has a domain
known as the Raf-interacting region (RIR) that mediates
binding of the Drosophila Raf kinase. This cd contains
CNKs from mammals, chickens, amphibians, fish, and
crustacea. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 114
Score = 35.1 bits (81), Expect = 0.052
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 22/107 (20%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL +KK ++ WK YW LKG++L +Y + K +G I +
Sbjct: 18 WLWKKKEAKGFFGQK-WKRYWFVLKGSSLYWY--------NNPQDEK----AEGFI--NL 62
Query: 67 PEH-------PKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
P+ K+ Y F S + F A ++ W++ + +A
Sbjct: 63 PDFKIERASECKKKYAFKASHPKIKTFYFAAENLDDMNKWLSKLITA 109
>gnl|CDD|223802 COG0730, COG0730, Predicted permeases [General function prediction
only].
Length = 258
Score = 37.0 bits (86), Expect = 0.052
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 1127 VVVFAILGFKAMSNAAEGTGLAFIA-AEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLS 1185
+V +L A T LA I G A +F V+ W + + + S
Sbjct: 163 IVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVD------WPLALLLAVGS 216
Query: 1186 LGLGSQIGILEGVLCTIFDIEIFKRI 1211
+ LG+ +G L ++ +R+
Sbjct: 217 I-LGAYLGAR---LARRLSPKVLRRL 238
>gnl|CDD|241391 cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain
containing/faciogenital dysplasia proteins 5 and 6
pleckstrin homology (PH) domain, C-terminus. FGD5
regulates promotes angiogenesis of vascular endothelial
growth factor (VEGF) in vascular endothelial cells,
including network formation, permeability, directional
movement, and proliferation. The specific function of
FGD6 is unknown. In general, FGDs have a RhoGEF (DH)
domain, followed by a PH domain, a FYVE domain and a
C-terminal PH domain. All FGDs are guanine nucleotide
exchange factors that activate the Rho GTPase Cdc42, an
important regulator of membrane trafficking. The RhoGEF
domain is responsible for GEF catalytic activity, while
the PH domain is involved in intracellular targeting of
the DH domain. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 90
Score = 34.3 bits (79), Expect = 0.075
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L R+K +K+ WK W LK L Y S D I + G + P
Sbjct: 4 YLYRRK-----RKKKSWKRLWFVLKDKVLYTYK------ASEDVVALESIPLLGYTVVPA 52
Query: 67 PE--HPKRDYIFCLSTAFGDAYLFQAPCQVELENWVN 101
E +F L Y+F+A + W+
Sbjct: 53 KEGFEGDESLVFQLLHKGQLPYIFRADDAETAQRWIE 89
>gnl|CDD|226953 COG4587, COG4587, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 268
Score = 35.5 bits (82), Expect = 0.16
Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 36/187 (19%)
Query: 776 LISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTG 835
++ L GL+ G W+ + DS GL + F+
Sbjct: 27 ILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVR------------- 73
Query: 836 YKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAF-LIPFMVMLILEGIPL 894
Q+T + + + R L+ Y A L + + L
Sbjct: 74 -------QLTTVWSIWEFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVL 126
Query: 895 FLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFS 954
LI + L L W L +AL + + F F F+
Sbjct: 127 LLIFALLYGA-ILQFLSPWTLY------------LFVLALALLFLLRFLIQF--TFGLFA 171
Query: 955 SSLPWSS 961
+S
Sbjct: 172 FWTERAS 178
>gnl|CDD|241530 cd13379, PH_RhoGap24, Rho GTPase activating protein 24 Pleckstrin
homology (PH) domain. RhoGap24 (also called ARHGAP24,
p73RhoGAp, and Filamin-A-associated RhoGAP) like other
RhoGAPs are involved in cell polarity, cell morphology
and cytoskeletal organization. They act as GTPase
activators for the Rac-type GTPases by converting them
to an inactive GDP-bound state and control actin
remodeling by inactivating Rac downstream of Rho leading
to suppress leading edge protrusion and promotes cell
retraction to achieve cellular polarity and are able to
suppress RAC1 and CDC42 activity in vitro.
Overexpression of these proteins induces cell rounding
with partial or complete disruption of actin stress
fibers and formation of membrane ruffles, lamellipodia,
and filopodia. Members here contain an N-terminal PH
domain followed by a RhoGAP domain and either a BAR or
TATA Binding Protein (TBP) Associated Factor 4 (TAF4)
domain. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 114
Score = 33.8 bits (77), Expect = 0.18
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 33/115 (28%)
Query: 19 RKRG-----WKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQP---IPEHP 70
RK+G W W LKG L ++ D E + + G I P + EHP
Sbjct: 10 RKQGGFVKTWHTRWFVLKGDQLYYFK-DEDETKPL-----------GTIFLPGNRVTEHP 57
Query: 71 KRD-----YIFCL--------STAFGDAYLFQAPCQVELENWVNSIHSACAAAFA 112
+ ++F + TA + YL A Q ++E+WV SI A F
Sbjct: 58 CNEEEPGKFLFEVVPGGDRERMTANHETYLLMASTQNDMEDWVKSIRRVIWAPFG 112
>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol
3-beta-glucosyltransferase Pleckstrin homology (PH)
domain, repeat 1. ATG26 (also called
UGT51/UDP-glycosyltransferase 51), a member of the
glycosyltransferase 28 family, resulting in the
biosynthesis of sterol glucoside. ATG26 in decane
metabolism and autophagy. There are 32 known
autophagy-related (ATG) proteins, 17 are components of
the core autophagic machinery essential for all
autophagy-related pathways and 15 are the additional
components required only for certain pathways or
species. The core autophagic machinery includes 1) the
ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and
ATG27), 2) the phosphatidylinositol 3-kinase complex
(ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the
ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7,
ATG8, ATG10, ATG12, and ATG16). Less is known about how
the core machinery is adapted or modulated with
additional components to accommodate the nonselective
sequestration of bulk cytosol (autophagosome formation)
or selective sequestration of specific cargos (Cvt
vesicle, pexophagosome, or bacteria-containing
autophagosome formation). The pexophagosome-specific
additions include the ATG30-ATG11-ATG17
receptor-adaptors complex, the coiled-coil protein
ATG25, and the sterol glucosyltransferase ATG26. ATG26
is necessary for the degradation of medium peroxisomes.
It contains 2 GRAM domains and a single PH domain. PH
domains are only found in eukaryotes. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. PH domains also have
diverse functions. They are often involved in targeting
proteins to the plasma membrane, but few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 130
Score = 33.7 bits (78), Expect = 0.20
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 32/106 (30%)
Query: 9 LRKKHQIELARKRGWKGYWVCLKGTTL--------LFYP---CDSREGRSVDAAPKHLII 57
L K+ + R + YW LKG L L++P D R G S + K
Sbjct: 35 LSKRGK----RTPRYNRYWFVLKGDVLSWYRSSTDLYFPHGTIDLRYGISAEITDKD--- 87
Query: 58 VDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSI 103
+ F ++T Y F+A + + WV ++
Sbjct: 88 ----------KETTH---FKITTN-SRTYTFKADSEPSAKEWVKAL 119
>gnl|CDD|217759 pfam03845, Spore_permease, Spore germination protein.
Length = 320
Score = 34.9 bits (81), Expect = 0.33
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 31/154 (20%)
Query: 998 PGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMF---PYIVLTIFFIRGIT--- 1051
P +P W ++ L L + ++ ++ KGI+ R F + + IF ++
Sbjct: 109 PDTPTW--IIILTLLLVSIY-LISKGIEVLAREFCFIIPILLIILLFILIFSLKQAHIKN 165
Query: 1052 -LPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNN---C 1107
P G G+ + L + FG L+ + +
Sbjct: 166 LRPVLGNGISPV--------------LKGSKTTSLPFGGFEILLMLYPFMKDKKKSKKAA 211
Query: 1108 VRDVIMVSICNALTAIYASVVVFAILGFKAMSNA 1141
+ V + + LT + +V +LG
Sbjct: 212 LLGVGISGLLYTLT----TFIVIGVLGVDQTKTL 241
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 34.9 bits (81), Expect = 0.35
Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 17/222 (7%)
Query: 1000 SPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGL 1059
P+ L L ++ F+ G + ++ TS+ + + + + L
Sbjct: 126 LPRKLGSLIFAL---VLAFLSWLGTLAVLKI---TSLLVFGKVIYLVLLVVYLIPHWNPA 179
Query: 1060 VHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNA 1119
P + + L VF SFG N N + V + +
Sbjct: 180 NLFALPSASQSFWKYLLLAIPVFVF-SFG---FHGNIPSLVNYMRKNSKKAVRKAILIGS 235
Query: 1120 LTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSIIF 1179
L A+ V++ ++GF +AA+ ++ + ++ P IF
Sbjct: 236 LIAL----VLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIF 291
Query: 1180 FMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPILTEALK 1221
+ + S +G+ G+ + D+ + L
Sbjct: 292 ALFAI---ATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLL 330
>gnl|CDD|241424 cd13270, PH1_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2
Pleckstrin homology (PH) domain, N-terminal repeat. The
binding of TAPP1 (also called PLEKHA1/pleckstrin
homology domain containing, family A (phosphoinositide
binding specific) member 1) and TAPP2 (also called
PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4,
5)P3, function as negative regulators of insulin and
PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin
complex). TAPP1 and TAPP2 contain two sequential PH
domains in which the C-terminal PH domain binds
PtdIns(3,4)P2. They also contain a C-terminal
PDZ-binding motif that interacts with several
PDZ-binding proteins, including PTPN13 (known previously
as PTPL1 or FAP-1) as well as the scaffolding proteins
MUPP1 (multiple PDZ-domain-containing protein 1),
syntrophin and utrophin. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 118
Score = 32.8 bits (75), Expect = 0.37
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 70 PKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107
PK ++ F ++ Y QA Q +LE WV +++ A
Sbjct: 75 PKAEFCFVINALS-RRYFLQANDQQDLEEWVEALNDAS 111
>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family. This family
includes a range of acyltransferase enzymes. This domain
is found in many as yet uncharacterized C. elegans
proteins and it is approximately 300 amino acids long.
Length = 326
Score = 34.4 bits (79), Expect = 0.49
Identities = 24/226 (10%), Positives = 52/226 (23%), Gaps = 55/226 (24%)
Query: 838 PGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRA----------------FLI 881
+ + R L P + +L + Y FL
Sbjct: 70 FKFLKKRLLRLLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLP 129
Query: 882 PFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVI 941
V +L +PL L L + + + L+ + ++
Sbjct: 130 ALFVFYLL--LPLLLR---------------LLRKLKKLLLLLLLALLLLLSLLYILILL 172
Query: 942 ITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIESPGSP 1001
+ L + R +
Sbjct: 173 VGLPPTVLNLLIGLLPFFLLG-------------------ALLARYRKRIRSKRL---LL 210
Query: 1002 KWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFI 1047
I+L L L +I+ + + G+ +Y ++L + +
Sbjct: 211 LIVILLALALLALILLLLFLFGLVYLAPELYGYFSLLLLLLGVLLL 256
>gnl|CDD|148404 pfam06781, UPF0233, Uncharacterized protein family (UPF0233).
Length = 87
Score = 31.5 bits (72), Expect = 0.53
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 986 RTTLDVSPNIESPGSPKWWIVL---CLL--LAWIIVFFI 1019
T + SP W++ L +L L W++V+++
Sbjct: 15 PTASRTPVKKKKKPSPVWFVPLMVGLMLLGLLWLVVYYL 53
>gnl|CDD|117544 pfam08978, Reoviridae_Vp9, Reoviridae VP9. This domain is found in
various VP9 viral outer-coat proteins. It has no known
function.
Length = 280
Score = 33.9 bits (77), Expect = 0.56
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 889 LEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYY 948
L GI + + G++M LG + +PW G + +T L+ N I
Sbjct: 107 LAGINRKITNVMSGERMILGHIAAGTLANPWSGKC--AGLFITNEHNLHDNQIEPGKICV 164
Query: 949 LFN-------SFSSSLPWSSCPTDHNGTIIPECELSSETA 981
LF + S+S +S+C H + +L++ET+
Sbjct: 165 LFITSLSTTANKSNSFAYSACSIPHEDWDFKKIKLTAETS 204
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of AF4
(Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain. Lilliputian
represents a novel pair-rule gene that acts in
cytoskeleton regulation, segmentation and morphogenesis
in Drosophila.
Length = 1154
Score = 34.5 bits (79), Expect = 0.62
Identities = 27/144 (18%), Positives = 45/144 (31%), Gaps = 21/144 (14%)
Query: 1422 RHSSTGKSAQEQSMNKSSLNPGCSQTLEKSKKPPRPPQRHSSGSIEYEQQAIIGQPQQGT 1481
S+ S S NK S + K ++ P S S +
Sbjct: 775 CSPSSSSSHHHSSSNKESR----KSSRNKEEEMLPSPSSPLSSS-----------SPKPE 819
Query: 1482 QPSYVQEPQSTHSTFRGRNKPLNESQVSQDEGDKEVKHDCDPGTKSEGEEDSITGAVKKT 1541
PS + + ++ + P + S K+EG+ S + K +
Sbjct: 820 HPSRKRPRRQEDTS--SSSGPFSASSTKSSSKSSSTSKH----RKTEGKGSSTSKEHKGS 873
Query: 1542 LGRTPNHLTLSTTSTLSAGSTGSQ 1565
G TPN + LS GS+ +
Sbjct: 874 SGDTPNKASSFPVPPLSNGSSKPR 897
>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and
related proteins Pleckstrin homology (PH) domain.
RhoGAP25 (also called ArhGap25) like other RhoGaps are
involved in cell polarity, cell morphology and
cytoskeletal organization. They act as GTPase activators
for the Rac-type GTPases by converting them to an
inactive GDP-bound state and control actin remodeling by
inactivating Rac downstream of Rho leading to suppress
leading edge protrusion and promotes cell retraction to
achieve cellular polarity and are able to suppress RAC1
and CDC42 activity in vitro. Overexpression of these
proteins induces cell rounding with partial or complete
disruption of actin stress fibers and formation of
membrane ruffles, lamellipodia, and filopodia. This
hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25.
Members here contain an N-terminal PH domain followed by
a RhoGAP domain and either a BAR or TATA Binding Protein
(TBP) Associated Factor 4 (TAF4) domain. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 114
Score = 31.9 bits (73), Expect = 0.67
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRD--YIFCL 78
+ W+ W L+G L +Y D E + P+ I + G ++ +P +P+ ++F +
Sbjct: 17 KNWQRRWFVLRGDQLYYYK-DEDESK-----PQGCIPLPGNTVKELPFNPEEPGKFLFEI 70
Query: 79 STAFG--------DAYLFQAPCQVELENWVNSI 103
G D+YL A Q E+E WV I
Sbjct: 71 IPGDGGTRRSANHDSYLLMANSQAEMEEWVKVI 103
>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant
zinc metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ
domains bind C-terminal polypeptides, and binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. In this subfamily of
protease-associated PDZ domains a C-terminal beta-strand
forms the peptide-binding groove base, a circular
permutation with respect to PDZ domains found in
Eumetazoan signaling proteins.
Length = 79
Score = 30.7 bits (70), Expect = 0.91
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSD 422
+ V S A GL GD I+ ING +
Sbjct: 15 VIGEVVPGSPAAKAGLKAGDRILAINGQKIKS 46
>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins. Ubiquitin homologs;
Includes ubiquitin and ubiquitin-like proteins.
Ubiquitin-mediated proteolysis is part of the regulated
turnover of proteins required for controlling cell cycle
progression. Other family members are protein modifiers
that perform a wide range of functions. Ubiquitination
usually results in a covalent bond between the
C-terminus of ubiquitin and the epsilon-amino group of a
substrate lysine. The three-step mechanism requires an
activating enzyme (E1) that forms a thiol ester with the
C-terminal carboxy group, a conjugating enzyme (E2) that
transiently carries the activated ubiquitin molecule as
a thiol ester, and a ligase (E3) that transfers the
activated ubiquitin from the E2 to the substrate lysine
residue. In poly-ubiquitination, ubiquitin itself is the
substrate.
Length = 69
Score = 30.2 bits (68), Expect = 1.0
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 278 KVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREMEDHNYFVPPRGD 337
KV L + + + + TV + + L P + + V + +P
Sbjct: 1 KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGK--------ILPDSLT 52
Query: 338 LIETYLSTHEVVEVC 352
L + L + + +
Sbjct: 53 LEDYGLQDGDELVLV 67
>gnl|CDD|217315 pfam03006, HlyIII, Haemolysin-III related. Members of this family
are integral membrane proteins. This family includes a
protein with hemolytic activity from Bacillus cereus. It
has been proposed that YOL002c encodes a Saccharomyces
cerevisiae protein that plays a key role in metabolic
pathways that regulate lipid and phosphate metabolism. In
eukaryotes, members are seven-transmembrane pass
molecules found to encode functional receptors with a
broad range of apparent ligand specificities, including
progestin and adipoQ receptors, and hence have been named
PAQR proteins. The mammalian members include progesterone
binding proteins. Unlike the case with GPCR receptor
proteins, the evolutionary ancestry of the members of
this family can be traced back to the Archaea.
Length = 207
Score = 32.6 bits (75), Expect = 1.1
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 998 PGSPKW-WIVLCLLLAWIIVFFIV--MKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG 1054
+W VL LL+ W+ + I + + G V+ Y + IF+ P
Sbjct: 126 LKRFRWLRTVLYLLMGWLGIIPIKHLILALGGGGLVLLVLGGVLYTLGAIFYALRFPGPF 185
Query: 1055 AGAGLVHMY 1063
G H
Sbjct: 186 DIWGHSHQI 194
>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain. Yeast Boi
proteins Boi1 and Boi2 are functionally redundant and
important for cell growth with Boi mutants displaying
defects in bud formation and in the maintenance of cell
polarity.They appear to be linked to Rho-type GTPase,
Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid
interactions with the GTP-bound ("active") form of
Cdc42, while Rho3 can suppress of the lethality caused
by deletion of Boi1 and Boi2. These findings suggest
that Boi1 and Boi2 are targets of Cdc42 that promote
cell growth in a manner that is regulated by Rho3. Boi
proteins contain a N-terminal SH3 domain, followed by a
SAM (sterile alpha motif) domain, a proline-rich region,
which mediates binding to the second SH3 domain of Bem1,
and C-terminal PH domain. The PH domain is essential for
its function in cell growth and is important for
localization to the bud, while the SH3 domain is needed
for localization to the neck. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 95
Score = 30.8 bits (70), Expect = 1.2
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 19 RKRG-----WKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKR- 72
+KRG WK + LKGT L + ++ D+ K LI + G + + K
Sbjct: 6 KKRGERYGTWKTRYFVLKGTRLYYLKSEN------DSKEKGLIDLTGHRVTVDDSNSKPG 59
Query: 73 DYIFCL-STAFGDAYLFQAPCQVELENWVNSI 103
Y F L A + F + L W+ ++
Sbjct: 60 RYGFKLVPPAVEKVHYFAVDEKEVLREWMKAL 91
>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561),
including the FRRS1 gene product. Cytochrome b(561), as
found in eukaryotes, similar to and including the human
FRRS1 gene product (ferric-chelate reductase 1), also
called SDR-2 (stromal cell-derived receptor 2). This
family comprises a variety of domain architectures, many
of which contain dopamine beta-monooxygenase (DOMON)
domains. The protein might act as a ferric-chelate
reductase, catalyzing the reduction of Fe(3+) to Fe(2+),
such as associated with the transport of iron from the
endosome to the cytoplasm. It is assumed that this
protein uses ascorbate as the electron donor. Belongs to
the cytochrome b(561) family, which are secretory
vesicle-specific electron transport proteins.
Cytochromes b(561) are integral membrane proteins that
bind two heme groups non-covalently, and may have six
alpha-helical trans-membrane segments.
Length = 191
Score = 32.3 bits (74), Expect = 1.2
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 844 ITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIELGIGQ 903
I W L P + +++ R+ W F + + L+ + L + +G
Sbjct: 45 IAWGILMP-------IGALLARYFLLGD-PVW---FYLHAGLQLL--AVLLAIAGFVLGI 91
Query: 904 KMRLGSLGVWNTIHPWLG 921
+ G G N H LG
Sbjct: 92 VLVQGGGGSLNNAHAILG 109
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and
diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of substrates including ions,
sugar phosphates, drugs, neurotransmitters, nucleosides,
amino acids, and peptides. They do so using the
electrochemical potential of the transported substrates.
Uniporters transport a single substrate, while symporters
and antiporters transport two substrates in the same or
in opposite directions, respectively, across membranes.
MFS proteins are typically 400 to 600 amino acids in
length, and the majority contain 12 transmembrane alpha
helices (TMs) connected by hydrophilic loops. The N- and
C-terminal halves of these proteins display weak
similarity and may be the result of a gene
duplication/fusion event. Based on kinetic studies and
the structures of a few bacterial superfamily members,
GlpT (glycerol-3-phosphate transporter), LacY (lactose
permease), and EmrD (multidrug transporter), MFS proteins
are thought to function through a single substrate
binding site, alternating-access mechanism involving a
rocker-switch type of movement. Bacterial members
function primarily for nutrient uptake, and as
drug-efflux pumps to confer antibiotic resistance. Some
MFS proteins have medical significance in humans such as
the glucose transporter Glut4, which is impaired in type
II diabetes, and glucose-6-phosphate transporter (G6PT),
which causes glycogen storage disease when mutated.
Length = 352
Score = 33.1 bits (76), Expect = 1.4
Identities = 35/219 (15%), Positives = 63/219 (28%), Gaps = 36/219 (16%)
Query: 1000 SPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGL 1059
+ ++L LLL + + + + L G P A A +
Sbjct: 62 GRRRVLLLGLLL-FALGSLL-------LAFASSLWLLLVGRFLLGLGG-GALYPAAAALI 112
Query: 1060 VHMYTPK-VEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICN 1118
+ PK + L + G G L+ + ++++I
Sbjct: 113 AEWFPPKERGRAL-------GLFSAGFGLGALLGPLLGGLLAESLGWRWL--FLILAILG 163
Query: 1119 ALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIV-ELPGAPFWSI 1177
L A+ ++ +L LAF + + + E+ G
Sbjct: 164 LLLALLLLFLLRLLLLL----------ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA 213
Query: 1178 IFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPIL 1216
+ L LG GIL G L + R R +L
Sbjct: 214 GLLLSLFGLG-----GIL-GALLGGLLSDRLGRRRLLLL 246
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 33.1 bits (76), Expect = 1.4
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 93 QVELENWVNSIHSACAAAFARHRGKTGTLHLLQEEIFRLEKAIDSDNKLKHMADLQMSVL 152
Q +L+ + SI S AR TG +Q + RL++ I + + +
Sbjct: 348 QADLDQ-LPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERD-LEKNNERLA 405
Query: 153 AEPETKQQINEQITQWEENLERLHCEQFRLR 183
A +++ + Q EE+L+ L Q R +
Sbjct: 406 A---IREEKDRQKAAIEEDLQAL-ESQLRQQ 432
>gnl|CDD|191296 pfam05514, HR_lesion, HR-like lesion-inducing. Family of plant
proteins that are associated with the hypersensitive
response (HR) pathway of defence against plant pathogens.
Length = 138
Score = 31.2 bits (71), Expect = 1.6
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 1075 VWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILG 1134
V+L +A Q F FG G +P N + + + I +V A++
Sbjct: 15 VFLLSAWQEFSEFGADGGPA---AKELRPKFNMFSKHVSKHLGMQVPHIDVKHIVAALIA 71
Query: 1135 FKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIV 1167
K + GL FI G ++ QA
Sbjct: 72 LKGLG------GLLFIFGSSFGAYLLLVYQAFA 98
>gnl|CDD|241435 cd13281, PH_PLEKHD1, Pleckstrin homology (PH) domain containing,
family D (with coiled-coil domains) member 1 PH domain.
Human PLEKHD1 (also called UPF0639, pleckstrin homology
domain containing, family D (with M protein repeats)
member 1) is a single transcript and contains a single
PH domain. PLEKHD1 is conserved in human, chimpanzee, ,
dog, cow, mouse, chicken, zebrafish, and Caenorhabditis
elegans. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 139
Score = 31.2 bits (71), Expect = 1.7
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 19 RKRGWKGYWVCLKGTTLLFYPC----DSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDY 74
+ W + LK LL+Y D + R + PK +I + G ++ + +
Sbjct: 26 QSAKWSKRFFVLKECFLLYYAESEKKDFEKTRRFNIHPKGVIPLGGCSIEAGRDPGRP-- 83
Query: 75 IFCLS---TAFGDAYLFQAPCQVELENWVNSIHSA 106
+C F + + A + E E+W++ + A
Sbjct: 84 -YCFLISHPDFKGSIILAADSEEEQESWLDMLREA 117
>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain.
Length = 81
Score = 29.9 bits (68), Expect = 1.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD 424
V V++ S A GL GD I+ I+G V+ L
Sbjct: 15 VTVVSVKEGSPAAKAGLKPGDIILSIDGKKVNSLT 49
>gnl|CDD|212052 cd11483, SLC-NCS1sbd_Mhp1-like, nucleobase-cation-symport-1 (NCS1)
transporter Mhp1-like; solute-binding domain. This NCS1
subfamily includes Microbacterium liquefaciens Mhp1, and
various uncharacterized NCS1s. Mhp1 mediates the uptake
of indolyl methyl- and benzyl-hydantoins as part of a
metabolic salvage pathway for their conversion to amino
acids. Mhp1 has 12 transmembrane (TM) helices (an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12; TMs numbered to conform to the Solute carrier
6 (SLC6) family Aquifex aeolicus LeuT). NCS1s are
essential components of salvage pathways for nucleobases
and related metabolites; their other known substrates
include allantoin, uracil, thiamine, and nicotinamide
riboside. NCS1s belong to a superfamily which also
contains the solute carrier 5 family sodium/glucose
transporters (SLC5s), and SLC6 neurotransmitter
transporters.
Length = 434
Score = 32.6 bits (75), Expect = 2.0
Identities = 39/177 (22%), Positives = 58/177 (32%), Gaps = 32/177 (18%)
Query: 773 VVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYE 832
V+ I F I T G +K ++ A +I +L MF K+ I E
Sbjct: 132 VLWFIIFAALQIVNTAYGFKAIKWLENIAA------PVIIAILVYMFYTLLTKYGVSIGE 185
Query: 833 MTGYKPGWYWQITW--RFLGPAIM-------SCILVSSIICRFLKKPS-YSAWN----RA 878
W ++ TW F AIM + L R LK Y + R
Sbjct: 186 NL-----WSFEGTWGMPFWA-AIMAFMGGWSTMALNIPDYSRELKPGPNYEGFFKRNKRR 239
Query: 879 FLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVA 935
+ F+ ++ + IG M + G WN I+ V LV +
Sbjct: 240 GIAQFIALVPVTVFMGL-----IGA-MSGIATGEWNPINVIQEVVDNKFLLVLTLLF 290
>gnl|CDD|217855 pfam04039, MnhB, Domain related to MnhB subunit of Na+/H+ antiporter.
Possible subunit of Na+/H+ antiporter. Predicted
integral membrane protein, usually four transmembrane
regions in this domain. Often found in bacterial NADH
dehydrogenase subunit.
Length = 125
Score = 30.8 bits (70), Expect = 2.0
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 1089 LAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLA 1148
L FG+ + + P +I+ L + VV L
Sbjct: 16 LVFGAYLFLRGHLSPGGGFQGGLIIAIAFLLLYIAFGIEVVEKFLPT------------T 63
Query: 1149 FIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTI 1202
+IA EG GL + T + L G PF + F ++ GL + + G+ +
Sbjct: 64 YIALEGIGLLIALLTLVGLLLFGWPFLNAFFLPLVGEAGLITALNFDVGLKVGV 117
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 32.4 bits (75), Expect = 2.1
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 768 LHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFT 827
L +V +L+G WL LF A IGLV+ ALI ++ E +T
Sbjct: 279 LSIVLTYFATYWLLGDGADGFT---WLNLF--GAVLIGLVVGALIGLIT-------EYYT 326
Query: 828 NDIYEMTGYKP 838
+ T Y+P
Sbjct: 327 S-----TEYRP 332
>gnl|CDD|241461 cd13307, PH2_AFAP, Actin filament associated protein family
Pleckstrin homology (PH) domain, repeat 2. There are 3
members of the AFAP family of adaptor proteins: AFAP1,
AFAP1L1, and AFAP1L2/XB130. AFAP1 is a cSrc binding
partner and actin cross-linking protein. AFAP1L1 is
thought to play a similar role to AFAP1 in terms of
being an actin cross-linking protein, but it
preferentially binds to cortactin and not cSrc, thereby
playing a role in invadosome formation. AFAP1L2 is a
cSrc binding protein, but does not bind to actin
filaments. AFAP1L2 acts as an intermediary between the
RET/PTC kinase and PI-3kinase pathway in the thyroid.
The AFAPs share a similar structure of a SH3 binding
motif, 3 SH2 binding motifs, 2 PH domains, a coiled-coil
region corresponding to the AFAP1 leucine zipper, and an
actin binding domain. This cd is the second PH domain of
AFAP. PH domains have diverse functions, but in general
are involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 101
Score = 30.4 bits (69), Expect = 2.1
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 23 WKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAF 82
W+ W C+K L FY R P L + I P P+HP Y F +
Sbjct: 16 WRSRWCCVKDGQLHFY--QDRNKLKSPQQPLPLRGCE-VIPGPDPKHP---YSFRILRNG 69
Query: 83 GDAYLFQAPCQVELENWVNSIHSACAAA 110
+ + +A ++ W+ + + +A
Sbjct: 70 EEVAVLEASSSEDMGRWLGLLLAETGSA 97
>gnl|CDD|219137 pfam06687, SUR7, SUR7/PalI family. This family consists of several
fungal-specific SUR7 proteins. Its activity regulates
expression of RVS161, a homologue of human endophilin,
suggesting a function for both in endocytosis. The
protein carries four transmembrane domains and is thus
likely to act as an anchoring protein for the eisosome
to the plasma membrane. Eisosomes are the immobile
protein complexes, that include the proteins Pil1 and
Lsp1, which co-localise with sites of protein and lipid
endocytosis at the plasma membrane. SUR7 protein may
play a role in sporulation. This family also includes
PalI which is part of a pH signal transduction cascade.
Based on the similarity of PalI to the yeast Rim9
meiotic signal transduction component it has been
suggested that PalI might be a membrane sensor for
ambient pH.
Length = 205
Score = 31.9 bits (73), Expect = 2.1
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 768 LHLVGVV-CLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLA-VMFIYGHEK 825
+H + + +I+ ++ I + L + + + L L +F+
Sbjct: 115 VHPIALFFTVIALILAGILAHFSSPRRGSLVNFLLSLLAFLFTLLAAALDTALFVKARNA 174
Query: 826 FTNDIYEMTGYKPGWYWQITWRFLGPAIMSCIL 858
F N P + W + A++S I
Sbjct: 175 F-NSNGISASLGPKLFA-FGWLAVAAALLSAIF 205
>gnl|CDD|216972 pfam02322, Cyto_ox_2, Cytochrome oxidase subunit II. This Family
consists of cytochrome bd type terminal oxidases that
catalyzes Quinol dependent, Na+ independent oxygen
uptake. Members of this family are integral membrane
proteins andi contain a protohaem IX centre B558. One
member of the family,cydB from Klebsiella pneumoniae, is
implicated in having an important role in micro-aerobic
nitrogen fixation in the enteric bacterium Klebsiella
pneumoniae.
Length = 327
Score = 32.1 bits (74), Expect = 2.1
Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 30/177 (16%)
Query: 776 LISFLVGLIFTT-------GAGEY---WLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEK 825
L +FL G+ AG Y + L + FA GL ++AL +L ++ K
Sbjct: 124 LAAFLQGVALGNLVQGVPFDAGNYAGGFFDLLNPFALLGGLAVVALYALLGATWL--ILK 181
Query: 826 FTNDIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIPFMV 885
++ E ++ + ++ LVS + L P+ + F P+++
Sbjct: 182 TEGELQE-------RARRLAKKLGLVLLVLFALVS--VWVPLAAPAL--FANWFSSPWLL 230
Query: 886 MLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVII 942
+L +P+ L + + G+ ++ V+L+ ++
Sbjct: 231 ILPA--LPVLAALLAVLLLRLRREGLAF-----LASGLAFVLVVLGLAVSLFPYILP 280
>gnl|CDD|233199 TIGR00939, 2a57, Equilibrative Nucleoside Transporter (ENT).
[Transport and binding proteins, Nucleosides, purines and
pyrimidines].
Length = 437
Score = 32.4 bits (74), Expect = 2.2
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 998 PGSPKWWIVL--CLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGA 1055
P W+ + L + +I +F + Q S V+F +I+L + F G + G
Sbjct: 333 PDEDSRWLPILSFLRVLFIPLFLLCNY-PQRSRLPVFFPGDAYFIILMLLF--GFS-NGY 388
Query: 1056 GAGLVHMYTPKVEKLLDPNVWLDAA--TQVFYSFGLAFGSLIAF 1097
L P+ +DP+ A +F GLA G++++F
Sbjct: 389 LGSLSMCLAPRQ---VDPHEREVAGALMVIFLLVGLALGAVLSF 429
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 32.3 bits (74), Expect = 2.3
Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 40/183 (21%)
Query: 1041 VLTIFFIRGITLPGAGAGLVHMYTPKV---EKLLDPNVWLDAATQVFYSFGLAF-GSLIA 1096
V + I I P + E+L N A +FY G G + A
Sbjct: 95 VYVLAGILAIAQA-FFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153
Query: 1097 FGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTG 1156
+ +A+ +++++ ++ + ++ + A + G
Sbjct: 154 TLG-----------IKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREG 202
Query: 1157 LAFI---------VFTQAIVELPGAPFWSIIF--FMM-------------LLSLGLGSQI 1192
+ F+ + + L AP +F L + GLG+ +
Sbjct: 203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALL 262
Query: 1193 GIL 1195
G L
Sbjct: 263 GAL 265
>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1
(AtPH1) PH domain. AtPH1 is expressed in all plant
tissue and is proposed to be the plant homolog of human
pleckstrin. Pleckstrin consists of two PH domains
separated by a linker region, while AtPH has a single PH
domain with a short N-terminal extension. AtPH1 binds
PtdIns3P specifically and is thought to be an adaptor
molecule since it has no obvious catalytic functions. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 117
Score = 30.4 bits (69), Expect = 2.5
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAI-MQPIPEHPKRDYIFCLS 79
+ W+ W LK L ++ + D+ P+ +I + + ++ E +++ F +S
Sbjct: 21 KTWRRRWFVLKQGKLFYFKDEDP-----DSEPRGVIDLSDCLTVKSAEEATNKEFAFEVS 75
Query: 80 TAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHRGKT 118
T + A + E E W+++I A
Sbjct: 76 TP-ERTFYLIADSEKEKEEWISAIGRAIVKLSRSKGTID 113
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism].
Length = 461
Score = 32.3 bits (74), Expect = 2.6
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 1119 ALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGL-AFIVFTQAIVELPGAPFWSI 1177
+ A +++V AI+ + + A LA + L FI+ A S
Sbjct: 28 SGFAWLFAILVAAIILW--ILEAIPLFALAILVIVLLVLSGFILAISASKLALSGFANST 85
Query: 1178 IFFMM---LLSLGL 1188
I+ + LLS GL
Sbjct: 86 IWLIFGLFLLSKGL 99
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 30.9 bits (70), Expect = 2.8
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 20/88 (22%)
Query: 121 LHLLQEEIFRLEKAIDSDNKLKHMADLQMSVLAE--PETKQQINEQITQWEENLERLHCE 178
L LL+E+ RL + + +L+ A+ ++ + + K+++ ++I EEN+ +L
Sbjct: 52 LELLREDNERLSTQYEREKELRKQAEQKLLEFEDELEQEKKELQKKIEDLEENVRQL--- 108
Query: 179 QFRLRCYMASLQNGELPNPKSLLTHVSR 206
EL K+L VSR
Sbjct: 109 --------------ELKA-KNLSDQVSR 121
>gnl|CDD|224372 COG1455, CelB, Phosphotransferase system cellobiose-specific
component IIC [Carbohydrate transport and metabolism].
Length = 432
Score = 32.2 bits (74), Expect = 2.9
Identities = 40/220 (18%), Positives = 69/220 (31%), Gaps = 70/220 (31%)
Query: 1033 FTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVF-YSFGLAF 1091
F + P ++ F+ LP N W QV+ +FG+
Sbjct: 32 FIAAMPLTIVGSIFLLINNLPFLFGA-------DFLGKPFGNGWKGILMQVYNGTFGI-M 83
Query: 1092 GSLIAFG-------SYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMS-NAAE 1143
L+AFG SY AL A S+ F I+ +++ A
Sbjct: 84 SLLVAFGIAYSLAKSYGVD---------------ALAAGLLSLAAFFIVTPLSIAVVPAG 128
Query: 1144 GTGLAFIAAEGTGLAFIVFTQAIV-------------------ELPGA---------PFW 1175
G A++ +G A I+ A+V +P A P +
Sbjct: 129 AVGAAWLGGKGLFTAIII---ALVTVEIYTFLVKRNITIKMPESVPPAVSKSFEALIPGF 185
Query: 1176 SIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPI 1215
I+ L+++ +L + I+ I+ P+
Sbjct: 186 IILSIFGLINI-------LLNSITGGNLITLIYTAIQAPL 218
>gnl|CDD|232788 TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family.
The seed members for this model are a paralogous family
of Mycobacterium tuberculosis. Nearly all proteins
scoring above the noise cutoff are from high-GC
Gram-positive organisms. The members of this paralogous
family of efflux proteins are all found in operons with
ATP-binding chain partners. They are related to a
putative daunorubicin resistance efflux protein of
Streptomyces peucetius. This model represents a branch of
a larger superfamily that also includes NodJ, a part of
the NodIJ pair of nodulation-triggering signal efflux
proteins. The members of this branch may all act in
antibiotic resistance.
Length = 232
Score = 31.3 bits (71), Expect = 3.1
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 1090 AFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGL-A 1148
+G+L G+ P + + + +V+ +LGF+ A L A
Sbjct: 64 RYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVIGFVLGFRFAGGALTALTLGA 123
Query: 1149 FIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILE 1196
I A GT L + A L ++ + + L G++
Sbjct: 124 VIIALGTALFAALGLVAGGTLQAEIVLAVANLVWFIFALLS--AGLVP 169
>gnl|CDD|218348 pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC
has been identified as a subunit of the pilus precursor
in bacteria. The protein undergoes three processing steps
before gaining its mature cyclic structure. This family
also contains several VIRB2 type IV secretion proteins.
The virB2 gene encodes a putative type IV secretion
system and is known to be a pathogenicity factor in
Bartonella species.
Length = 98
Score = 29.5 bits (67), Expect = 3.2
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 1087 FGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALT---AIYASVVVFAILGFKAMSNAAE 1143
A L+A + Q + + V V + +I + LT A + + G A
Sbjct: 16 ALAAALLLLASPALAQGSGDPVETV-LQNIVDFLTGPLAKVIATIAIIGAGIMAAFGRLS 74
Query: 1144 GTGLAFIAAEGTGLAFIVFTQAIV 1167
L + G+ I IV
Sbjct: 75 WRTLVMVVI---GIVIIFGASTIV 95
>gnl|CDD|206188 pfam14018, DUF4234, Domain of unknown function (DUF4234). This
presumed integral membrane protein domain is functionally
uncharacterized. This domain family is found in bacteria
and archaea, and is approximately 70 amino acids in
length.
Length = 75
Score = 29.2 bits (66), Expect = 3.3
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 982 YFWYRTTLDVSP---NIESPGSPKWWIVLCLLLAWIIVFFIV 1020
Y+ Y+ +++ I+SP S ++L +L ++ +
Sbjct: 20 YWLYKLNRELNRLAGRIDSPRSGGLVLLLSIL--TCGIYGLY 59
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter.
This family represents a high-affinity plasma-membrane
choline transporter in C.elegans which is thought to be
rate-limiting for ACh synthesis in cholinergic nerve
terminals.
Length = 327
Score = 31.4 bits (72), Expect = 3.5
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 33/148 (22%)
Query: 1004 WIVLCLLLAWIIVFF-----IVMKGIQSSGRV------VYFTSMFPYIVLTIFFIRGITL 1052
+ VL L+L +I+F + + ++++ + + ++ L F I
Sbjct: 6 FTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIALWI-- 63
Query: 1053 PGAGAGLVHMYTPKVEKLLDPNV------WLDAATQVFYSFGLAFGS--LIAFGS----- 1099
L PK P V+ FGL + S ++A
Sbjct: 64 -VVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTIAG 122
Query: 1100 ------YNQPNNNCVRDVIMVSICNALT 1121
+ N + + S ALT
Sbjct: 123 VVATWYFAGGKRNMPKFPTLSSFKRALT 150
>gnl|CDD|214978 smart01021, Bac_rhodopsin, Bacteriorhodopsin-like protein. The
bacterial opsins are retinal-binding proteins that
provide light- dependent ion transport and sensory
functions to a family of halophilic bacteria.. They are
integral membrane proteins believed to contain seven
transmembrane (TM) domains, the last of which contains
the attachment point for retinal (a conserved lysine).
Length = 233
Score = 31.1 bits (71), Expect = 3.6
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 1004 WIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTI 1044
W+V L+L +VF ++ + + S R+ Y + V I
Sbjct: 3 WVVFALMLLGALVFVLLSRRVPDSRRLFYLITALITGVAAI 43
>gnl|CDD|226962 COG4603, COG4603, ABC-type uncharacterized transport system, permease
component [General function prediction only].
Length = 356
Score = 31.4 bits (72), Expect = 3.6
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 1121 TAIYASVVVFAILG----FKAMSNAAEGTGLAFIAAEGTGLA-FIVFTQAIVELPGAPFW 1175
+ A+ ++ LG F+A GL I AEG A I + P P W
Sbjct: 61 LLVKAAPLILTGLGVAVAFRA--------GLFNIGAEGQFYAGAIAAALVALLFPDLPSW 112
Query: 1176 SIIFFMMLLSLGLGSQIGILEGVLCTIFDI 1205
+ +L G ++ G+L F +
Sbjct: 113 LALPLALLAGAAGGGLWALIPGLLKARFGV 142
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 31.0 bits (70), Expect = 3.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 115 RGKTGTLHLLQEEIFRLEKAIDSDNKLKHMADLQMSVLAEPETKQQINEQITQ 167
R KT L L++EI E+A++S+ K D +M L E K Q E++ Q
Sbjct: 7 RNKTDELEKLKDEIKAEEEALESEEKHLKEYDKEMEELL--EEKMQHVEELRQ 57
>gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional.
Length = 347
Score = 31.2 bits (71), Expect = 4.1
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 28/141 (19%)
Query: 480 ISEEMICDLIVPAPSWSKEHNISEQPPEKVKMPGSLYNRDLL-MSNNNNSSTINNNNVNS 538
I+E+MI D++ P P SK H I ++ EK+ G DLL +S V
Sbjct: 161 ITEDMIPDILKPLPI-SKVHGIGKKSVEKLNNIGIYTIEDLLKLSREFLIEYFGKFGV-- 217
Query: 539 NNKGETYEIENLIKSAGEVTGFCRSPVETHRTSPTGSMANQSSLNPSRQLTDAEKL---- 594
E YE + G VE R S+ +++L + D E+L
Sbjct: 218 ----EIYE---------RIRGIDYREVEVSRE--RKSIGKETTL--KKDTKDKEELKKYL 260
Query: 595 ---SKVIIELIETERTYVKNL 612
S +I E ++ Y K +
Sbjct: 261 KDFSNIISEELKKRNLYGKTV 281
>gnl|CDD|216883 pfam02118, Srg, Srg family chemoreceptor.
Length = 275
Score = 31.0 bits (71), Expect = 4.1
Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 49/174 (28%)
Query: 807 VLIALIEMLAVMFIYGHEKFTNDIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRF 866
+L+++ M V+F HEKF + + L I+ I+ S I
Sbjct: 100 ILLSVNRMSCVLFPVTHEKFWS--------------RYYKLVL---IIIFIIPFSFIWNI 142
Query: 867 LKKPSY---------------SAWNR--AFLIPFMVMLILEGIPLFLIELGIGQKM--RL 907
L Y W F + + +++++ I ++ K+ R+
Sbjct: 143 LISRVYVNPVNGGFSINYEKAVPWASTSLFQLIYFILILVFTIITSIVTSYKLAKLSKRI 202
Query: 908 GSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSS 961
S V S ++T F+++ + ++ W F F + LP S
Sbjct: 203 KS-------------VERSLTIITIFISVVFLLVAAWQVLNSFAFFFNFLPDSK 243
>gnl|CDD|241266 cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein pleckstrin
homology (PH) domain. The kinesin-3 family motors KIFIA
(Caenorhabditis elegans homolog unc-104) and KIFIB
transport synaptic vesicle precursors that contain
synaptic vesicle proteins, such as synaptophysin,
synaptotagmin and the small GTPase RAB3A, but they do
not transport organelles that contain plasma membrane
proteins. They have a N-terminal motor domain, followed
by a coiled-coil domain, and a C-terminal PH domain.
KIF1A adopts a monomeric form in vitro, but acts as a
processive dimer in vivo. KIF1B has alternatively
spliced isoforms distinguished by the presence or
absence of insertion sequences in the conserved
amino-terminal region of the protein; this results in
their different motor activities. KIF1A and KIF1B bind
to RAB3 proteins through the adaptor protein
mitogen-activated protein kinase (MAPK) -activating
death domain (MADD; also calledDENN), which was first
identified as a RAB3 guanine nucleotide exchange factor
(GEF). PH domains have diverse functions, but in general
are involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 111
Score = 29.5 bits (67), Expect = 4.4
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 22 GWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPE---HPKRDYIFCL 78
GW WV L+ L Y ++G I + A ++ P+ R +F +
Sbjct: 29 GWVRRWVVLRRPYLHIYS-SEKDGDERGV-----INLSTARVEYSPDQEALLGRPNVFAV 82
Query: 79 STAFGDAYLFQAPCQVELENWVNSI 103
T +YL QA + E+ +W+ +I
Sbjct: 83 YTPTN-SYLLQARSEKEMHDWLYAI 106
>gnl|CDD|216801 pfam01943, Polysacc_synt, Polysaccharide biosynthesis protein.
Members of this family are integral membrane proteins.
Many members of the family are implicated in production
of polysaccharide. The family includes RfbX part of the
O antigen biosynthesis operon. The family includes SpoVB
from Bacillus subtilis, which is involved in spore
cortex biosynthesis.
Length = 272
Score = 31.1 bits (71), Expect = 4.6
Identities = 23/145 (15%), Positives = 38/145 (26%), Gaps = 20/145 (13%)
Query: 770 LVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTND 829
++ LI L+ LI + A I L+ G EK
Sbjct: 83 GKLLLSLIFLLILLIAAFLGLPDLAVILLILALAILLLPGVSQ--FFSWLFQGLEKMKYI 140
Query: 830 IYEMTGYK-------------PGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWN 876
M K L +++ I+ +++ +
Sbjct: 141 AISMIIEKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRKKFLPRFVF--- 197
Query: 877 RAFLIPFMVMLILEGIPLFLIELGI 901
F + L+ PLFL L I
Sbjct: 198 --FSLKLFKELLRFSWPLFLSSLAI 220
>gnl|CDD|203570 pfam07058, Myosin_HC-like, Myosin II heavy chain-like. This family
represents a conserved region within a number of myosin
II heavy chain-like proteins that seem to be specific to
Arabidopsis thaliana.
Length = 351
Score = 31.2 bits (70), Expect = 4.9
Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 19/178 (10%)
Query: 1362 LRSQIQRRTEKVYV---LSNSTAEFRNAFLKTIRQIIRESVRNMSIPMTKPGVATQIVSN 1418
L+ ++Q+ +K+ + + S A+ + F ++ ++ E ++ + +P
Sbjct: 120 LQGEMQQLRDKLAISDRAAKSEAQLKEKFKLRLK-VLEEGLKGPNSSFVRP--------T 170
Query: 1419 TLGRHSSTGKSAQEQSMNKSSLNPGCSQTLEKSKKPPRPPQRHS-SGSIEYEQQAIIGQP 1477
T+GR S G + + QS+ + +P + SKK P R S +G I + G
Sbjct: 171 TVGRSESNGPT-RRQSLGGAETSPKFTSNGGLSKKRPSSQLRGSLTGRISTVLKHAKGTS 229
Query: 1478 QQGTQPSYVQEPQSTHSTFRGRNKPLNESQVSQDEGDKEVKHDCDPGTKSEGEEDSIT 1535
S+ +S + N P N + E D K+E E+ +
Sbjct: 230 I-----SFDGGTRSMDRSKILANGPSNFPLNDKHEEGTSRGESPDSERKTEEEDGNAY 282
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 31.3 bits (71), Expect = 5.2
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 124 LQEEIFRLEKAIDSDNKLKHMADLQMSVLAEPETKQQINEQITQWEENLERL 175
+E L I D + + L+ S+ A K+ + E + E + L
Sbjct: 315 AREAAAALLAQIGPDADEEAVESLRPSLAA----KETVTELEKRKEALDQAL 362
>gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein. The OPT family
of oligopeptide transporters is distinct from the ABC
pfam00005 and PTR pfam00854 transporter families. OPT
transporters were first recognised in fungi (Candida
albicans and Schizosaccharomyces pombe), but this
alignment also includes orthologues from Arabidopsis
thaliana. OPT transporters are thought to have 12-14
transmembrane domains and contain the following motif:
SPYxEVRxxVxxxDDP.
Length = 619
Score = 31.1 bits (71), Expect = 5.3
Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 22/82 (26%)
Query: 1001 PKWWIVLCLLLAWI--IVFFIVMKGIQS------------------SGRVVYFTSMFPYI 1040
P WW + L+L+ + I + Q S + T P
Sbjct: 350 PMWWYLAGLVLSLVLGIALVAALFPTQLPVWGLLLALLLAFVFAIPSAYIAGLTGSSPVS 409
Query: 1041 VLTIF--FIRGITLPGAGAGLV 1060
L I I G LPG +
Sbjct: 410 GLGILTELIAGYVLPGRPLANL 431
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 30.8 bits (69), Expect = 6.1
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 1409 PGVATQIVSNTLGRHSSTGKSAQEQSMNKSSLNPGCSQTLEKSKKPPRPPQRHSSGSIEY 1468
PG+ S+ RH K Q+ ++ NP T++ + P+
Sbjct: 183 PGLPKTFTSSHGHRHRHAPKPTQQPTVQ----NPAQQPTVQNPAQQPQQQP--------- 229
Query: 1469 EQQAIIGQPQQGTQPSYVQEPQSTHSTFRGRNK 1501
+QQ + Q Q Q PQ+ R R +
Sbjct: 230 QQQPVQPAQQPTPQNPAQQPPQTEQGHKRSREQ 262
>gnl|CDD|227696 COG5409, COG5409, EXS domain-containing protein [Signal transduction
mechanisms].
Length = 384
Score = 30.9 bits (70), Expect = 6.2
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 1013 WIIVFFIVMKGIQSSGRVVYFTSMFPYI-VLTIFFI 1047
+ FI + ++ ++ F P + V T+F+
Sbjct: 97 FTTSLFIFLNAVEGLKFILLFVYFLPLLQVGTVFWF 132
>gnl|CDD|216963 pfam02293, AmiS_UreI, AmiS/UreI family transporter. This family
includes UreI and proton gated urea channel as well as
putative amide transporters.
Length = 166
Score = 29.9 bits (68), Expect = 6.9
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 1142 AEGTGLA----FIAAEGTGLAFIVFTQAIVELPGAPF------WSIIFFMMLLSLGLGSQ 1191
+G GL F+A A + FT F W++++F+ L LGLG
Sbjct: 82 LDGRGLGWFSLFVAITALPYAIVSFTSG----EDPWFGVIWLAWAVLWFLFFLLLGLGKS 137
Query: 1192 IGILEGVLC 1200
+ G L
Sbjct: 138 LTKFTGWLA 146
>gnl|CDD|129816 TIGR00733, TIGR00733, putative oligopeptide transporter, OPT family.
This protein represents a small family of integral
membrane proteins from Gram-negative bacteria, a
Gram-positive bacteria, and an archaeal species. Members
of this family contain 15 to 18 GES predicted
transmembrane regions, and this family has extensive
homology to a family of yeast tetrapeptide transporters,
including isp4 (Schizosaccharomyces pombe) and Opt1
(Candida albicans). EspB, an apparent equivalog from
Myxococcus xanthus, shares an operon with a two component
system regulatory protein, and is required for the normal
timing of sporulation after the aggregation of cells.
This is consistent with a role in transporting
oligopeptides as signals across the membrane [Transport
and binding proteins, Amino acids, peptides and amines].
Length = 591
Score = 31.0 bits (70), Expect = 7.0
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 1121 TAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFT-QAIVEL---PGAPFWS 1176
+I A+V+ A+L + E + A+ L+ ++F A++ L P+W
Sbjct: 34 ASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSSVIFVLPALLMLGYWTEFPYWI 93
Query: 1177 IIFFMMLLSLGLGSQIGILEGVLCTI 1202
++ +LG G L GVL TI
Sbjct: 94 T---TVICALG-----GSL-GVLFTI 110
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 29.7 bits (67), Expect = 7.0
Identities = 17/110 (15%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 514 SLYNRDLLMSNNNNSSTINNNNVNSNNKGETYEIENLIKSAGEVTGFCRSPVETHRTSPT 573
+ +R + NN + +++ +++ + + E + + +E +P
Sbjct: 32 DVLSRKRIKFNNPPRIDEDGGDIDDDDEDDEDD-EEADAEDDDENPYKLIRLE-EILAPL 89
Query: 574 GS---MANQSSLNPSRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYL 620
+ +++ + + +L+ I LIE E+ + LN LL+ L
Sbjct: 90 THPSDLPTHPAISRTFKSKTLSELALEAIALIEKEQNNLNKLNKLLQVLL 139
>gnl|CDD|233105 TIGR00728, OPT_sfam, oligopeptide transporter, OPT superfamily. This
superfamily has two main branches. One branch contains a
tetrapeptide transporter demonstrated experimentally in
three different species of yeast. The other family
contains EspB of Myxococcus xanthus, a protein required
for normal rather than delayed sporulation after cellular
aggregation; its role is unknown but is compatible with
transport of a signalling molecule. Homology between the
two branches of the superfamily is seen most easily at
the ends of the protein. The central regions are poorly
conserved within each branch and may not be homologous
between branches.
Length = 606
Score = 30.8 bits (70), Expect = 7.1
Identities = 32/241 (13%), Positives = 62/241 (25%), Gaps = 34/241 (14%)
Query: 941 IITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPN---IES 997
I L FS S WS + + I S
Sbjct: 184 IARNLLRVLLKYFSVSFLWSF--VSWFFPGFTA--FQTFGGLGSGSIGFGWQQSSAYIGS 239
Query: 998 PGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVV-----------YFTSMFPYIVLTI-F 1045
+ + L +LL +++ F IV+ + ++ Y +
Sbjct: 240 GLITPFTVGLNILLGFVLAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGTAR 299
Query: 1046 FIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNN 1105
L+ K + + SFGL + + Q
Sbjct: 300 RDHYKLGRDDHVRLLSRDEDLKVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPW 359
Query: 1106 NCVRDVIMVSICNALTAIYA-------------SVVVFA-ILGFKAMSNAAEGTGLAFIA 1151
V +++++ A+ + ++ IL + ++N A FI
Sbjct: 360 WGVIVALIIALVLAIPIGILAGITNPVSGLNIITELIIGYILPGRPLANLAFKA-YGFIT 418
Query: 1152 A 1152
A
Sbjct: 419 A 419
>gnl|CDD|225715 COG3174, COG3174, Predicted membrane protein [Function unknown].
Length = 371
Score = 30.8 bits (70), Expect = 7.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 772 GVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAV 817
L + GL+F+ A Y + + GT GL+L+ALI LA
Sbjct: 258 PFSLLPALAFGLLFS--AILYASAVLRTIFGTAGLLLLALISGLAD 301
>gnl|CDD|234099 TIGR03062, pip_yhgE_Cterm, YhgE/Pip C-terminal domain. This family
contains the C-terminal domain of a family of multiple
membrane-spanning proteins of Gram-positive bacteria. One
member was shown to be a host protein essential for phage
infection, so many members of this family are called
"phage infection protein". A separate model, TIGR03061,
represents the conserved N-terminal domain. The domains
are separated by regions highly variable in both length
and sequence, often containing extended heptad repeats as
described in model TIGR03057.
Length = 208
Score = 30.2 bits (69), Expect = 7.6
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 1122 AIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSIIFFM 1181
AI V+ LG A F T L F+ Q +V L G + +
Sbjct: 78 AIILYGVLILGLGLDPAHPPAT---FGFAIL--TSLTFMAIIQFLVALFGNVGRFLALVL 132
Query: 1182 MLLSLG 1187
++L LG
Sbjct: 133 LVLQLG 138
>gnl|CDD|132761 cd07076, NR_LBD_GR, Ligand binding domain of the glucocorticoid
receptor, a member of the nuclear receptor superfamily.
The ligand binding domain of the glucocorticoid receptor
(GR): GR is a ligand-activated transcription factor
belonging to the nuclear receptor superfamily. It binds
with high affinity to cortisol and other glucocorticoids.
GR is expressed in almost every cell in the body and
regulates genes controlling a wide variety of processes
including the development, metabolism, and immune
response of the organism. In the absence of hormone, the
glucocorticoid receptor (GR) is complexes with a variety
of heat shock proteins in the cytosol. The binding of the
glucocorticoids results in release of the heat shock
proteins and transforms it to its active state. One
mechanism of action of GR is by direct activation of gene
transcription. The activated form of GR forms dimers,
translocates into the nucleus, and binds to specific
hormone responsive elements, activating gene
transcription. GR can also function as a repressor of
other gene transcription activators, such as NF-kappaB
and AF-1 by directly binding to them, and bloc king the
expression of their activated genes. Like other members
of the nuclear receptor (NR) superfamily of
ligand-activated transcription factors, GR has a central
well conserved DNA binding domain (DBD), a variable
N-terminal domain, a flexible hinge and a C-terminal
ligand binding domain (LBD). The LBD also functions for
dimerization and chaperone protein association.
Length = 247
Score = 30.3 bits (68), Expect = 7.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 1180 FMMLLSLGLGSQIGILEGVLCTIFDIEIFK-RIRKPILTEALKGMEKVAEHINEMQRIHE 1238
F+M +LG S +LC D+ I + R+ P + + K M V+ ++ +Q +E
Sbjct: 72 FLMAFALGWRSYRQSNGNLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYE 131
Query: 1239 EY 1240
EY
Sbjct: 132 EY 133
>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1. The SulP
family is a large and ubiquitous family with over 30
sequenced members derived from bacteria, fungi, plants
and animals. Many organisms including Bacillus subtilis,
Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis
thaliana and Caenorhabditis elegans possess multiple SulP
family paralogues. Many of these proteins are
functionally characterized, and all are sulfate uptake
transporters. Some transport their substrate with high
affinities, while others transport it with relatively low
affinities. Most function by SO42- :H+symport, but SO42-
:HCO3- antiport has been reported for the rat protein
(spP45380). The bacterial proteins vary in size from 434
residues to 566 residues with one exception, a
Mycobacterium tuberculosis protein with 784 residues. The
eukaryotic proteins vary in size from 611 residues to 893
residues with one exception, a protein designated "early
nodulin 70 protein" from Glycine max which is reported to
be of 485 residues. Thus, the eukaryotic proteins are
almost without exception larger than the prokaryotic
proteins. These proteins exhibit 10-13 putative
transmembrane a-helical spanners (TMSs) depending on the
protein. The phylogenetic tree for the SulP family
reveals five principal branches. Three of these are
bacterial specific as follows: one bears a single protein
from M. tuberculosis; a second bears two proteins, one
from M. tuberculosis, the other from Synechocystis sp,
and the third bears all remaining prokaryotic proteins.
The remaining two clusters bear only eukaryotic proteins
with the animal proteins all localized to one branch and
the plant and fungal proteins localized to the other. The
generalized transport reactions catalyzed by SulP family
proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in)
+ nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) +
nHCO3- (out) [Transport and binding proteins, Anions].
Length = 563
Score = 30.8 bits (70), Expect = 7.8
Identities = 72/415 (17%), Positives = 135/415 (32%), Gaps = 106/415 (25%)
Query: 850 GPAIMSCILVSSIICRFLKK--PSYSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRL 907
GP + +L+ S+I R + A AF + + GI F + LG+ +RL
Sbjct: 69 GPVAVMSLLLGSVIARVGLQYLFDCDAIRLAFTLTLLA-----GI--FQVILGL---LRL 118
Query: 908 GSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHN 967
G L + +S +++ F+ I L + + TD
Sbjct: 119 GFLIEF-----------LSHAVISGFMTGAAITIGLSQLKGLL-----GISIFNTRTDTL 162
Query: 968 GTIIPECELSSETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSS 1027
G +I +T PN + W ++ L+ +++F + K +
Sbjct: 163 GVVI---------------STWAGLPNT---HNWNWCTLVIGLV--LLLFLLYTKKLGKR 202
Query: 1028 GRVVYF----TSMFPYIVLTIFFI------RGITLPG---AGAGLVHMYTPKVEKLLDPN 1074
+ + F + I+ T+ +G+++ G +G T E L P
Sbjct: 203 NKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGHIPSGLSFFPPITLDWELL--PT 260
Query: 1075 VWLDAATQVFYSFGLAFGSLIA--FGSYN----QPNNNCVRDVIMVSICNALTAIYASVV 1128
+ DA GL IA F N ++++ I N + + ++
Sbjct: 261 LAPDAIAIAI--VGLIESIAIARSFARMTGYKIDAN----QELVAQGIANIVGSFFSCYP 314
Query: 1129 VFAILGFKAMSNAAEG-TGL-AFIAAEGTGLAFIVFTQAIVELPGA-------------- 1172
L A++ A T L + A L +V T +P A
Sbjct: 315 ATGSLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLI 374
Query: 1173 ------------PFWSIIFFM-MLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKP 1214
+++ + + +IG+L GV + + RI +P
Sbjct: 375 DYKELYKLWKADKMDFVVWLVTFFGVVFTSIEIGLLVGVALSAAF--LLLRIARP 427
>gnl|CDD|234075 TIGR02968, succ_dehyd_anc, succinate dehydrogenase, hydrophobic
membrane anchor protein. In E. coli and many other
bacteria, two small, hydrophobic, mutually homologous
subunits of succinate dehydrogenase, a TCA cycle enzyme,
are SdhC and SdhD. This family is the SdhD, the
hydrophobic membrane anchor protein. SdhC is
apocytochrome b558, which also plays a role in anchoring
the complex [Energy metabolism, TCA cycle].
Length = 105
Score = 28.7 bits (65), Expect = 8.0
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 15/66 (22%)
Query: 1003 WW------IVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAG 1056
W +VL L ++I F + + G+ F + I + +
Sbjct: 8 WLLQRVTAVVLALYTIFLIGFLLALPGLTYEAWRALFAHPWMKIFTLLALL--------- 58
Query: 1057 AGLVHM 1062
A L H
Sbjct: 59 ALLYHA 64
>gnl|CDD|241422 cd13268, PH_Brdg1, BCR downstream signaling 1 Pleckstrin homology
(PH) domain. Brdg1 is thought to function as a docking
protein acting downstream of Tec, a protein tyrosine
kinases (PTK), in B-cell antigen receptor (BCR)
signaling. BRDG1 contains a proline-rich (PR) motif
which is thought to bind SH3 or WW domains, a PH
domain, and multiple tyrosine residues which are
potential target sites for SH2 domains. Since PH
domains bind phospholipids it is thought to be involved
in the tethering of Tec and BRDG1 to the cell
membrane.Tec and Pyk2, but not Btk, Bmx, Lyn, Syk, or
c-Abl, induces phosphorylation of BRDG1 on tyrosine
residues. Efficient phosphorylation requires both the
PH and SH2 domains of BRDG1 and the kinase domain of
Tec. The overexpression of BRDG1 increases
theBCR-mediated activation of cAMP-response element
binding protein (CREB). Phosphorylated BRDG1 is
hypothesized to recruit CREB either directly or through
its recruitment of downstream effectors which then
recruit CREB. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction
with a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 127
Score = 29.3 bits (66), Expect = 8.1
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 25/76 (32%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPC--------------------DSREGR 46
+L +++ + RK W L+GTTL FY + R
Sbjct: 17 FLEKRRSKDREFRK-----LWTELRGTTLFFYNDKKDTQYVEKLDLSALTSLTDEISRER 71
Query: 47 SVDAAPKHLIIVDGAI 62
++DAA L++ D +
Sbjct: 72 NLDAARFTLVLKDEEV 87
>gnl|CDD|119322 cd06580, TM_PBP1_transp_TpRbsC_like, Transmembrane subunit (TM) of
Treponema pallidum (Tp) RbsC-1, RbsC-2 and related
proteins. This is a functionally uncharacterized subgroup
of TMs which belong to a larger group of TMs of
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporters, which are mainly involved in
the uptake of branched-chain amino acids (AAs) or in the
uptake of monosaccharides including ribose, galactose,
and arabinose, and which generally bind type 1 PBPs.
PBP-dependent ABC transporters consist of a PBP, two TMs,
and two cytoplasmic ABCs, and are mainly involved in
importing solutes from the environment. The solute is
captured by the PBP, which delivers it to a gated
translocation pathway formed by the two TMs. The two ABCs
bind and hydrolyze ATP and drive the transport reaction.
Length = 234
Score = 30.1 bits (69), Expect = 8.1
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 1130 FAILGFKAMSNA-AEGTGLAFIAAEGTGL--AFIVFTQAIVELPGAPFWSIIFFMMLLSL 1186
L A+ A + G+ I EG L AF + G P + +L +
Sbjct: 1 ATPLILAALGVAISFRAGVFNIGLEGQMLLGAFAAA--LVALYLGLPATGSLPLGLLAAA 58
Query: 1187 GLGSQIGILEGVLCTIFDI 1205
G+ +L +L +
Sbjct: 59 LAGALWALLPALLKAKLGV 77
>gnl|CDD|165120 PHA02753, PHA02753, hypothetical protein; Provisional.
Length = 298
Score = 30.3 bits (68), Expect = 8.2
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 26/157 (16%)
Query: 796 LFDSFAGTIGLVL---IALIEMLAVMFIYGHEK-FTNDIYEMTGYKPG----WYWQITW- 846
+ + AG +GL IALI+++A++ I H F+ G G +
Sbjct: 25 VHGAMAGALGLAGNGAIALIQIIALIAIIAHWANFSEADGFAAGAAFGAGTTAFIGAHDL 84
Query: 847 --RFLGPAIMSCI--LVSSIICRF-----------LKKPSYSAWNRAFLIPFMVMLILE- 890
+ AI + I +V +I F + P+ A FL MLIL
Sbjct: 85 AIDAILFAIGTLINSIVDTIEKAFLLGIALGFLGFILAPAIFAGIAGFLFGLAAMLILRL 144
Query: 891 -GIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGIS 926
G+ +ELGI + G I P++GG+ I+
Sbjct: 145 GGLLTEALELGIHALFKHLPEGYAALIAPFIGGIFIA 181
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter
(APA) family. This family includes several families of
antiporters that, rather commonly, are encoded next to
decarboxylases that convert one of the antiporter
substrates into the other. This arrangement allows a
cycle that can remove proteins from the cytoplasm and
thereby protect against acidic conditions [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 473
Score = 30.4 bits (69), Expect = 8.2
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 999 GSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGI 1050
G+P I+ +L W+ F+V++G++ + + T++ I L +F I G
Sbjct: 124 GNPVPSILGASVLLWV-FTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGW 174
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 30.6 bits (70), Expect = 8.3
Identities = 8/45 (17%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 1004 WIVLCLLLAWI--IVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFF 1046
W+++ + I ++ F G+ + +++Y YI+L + +
Sbjct: 72 WLLIGAIPLAISLVLLFATPFGLSMTAKLIYAFIT--YILLGLAY 114
>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown].
Length = 552
Score = 30.4 bits (69), Expect = 8.5
Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 44/194 (22%)
Query: 776 LISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTG 835
LI +L+ A WL ++ FA + + + LI + I G N IY +
Sbjct: 242 LIWWLLATAAGLLAFLPWLLVY--FANSFRVGIPDLI---TLDGIVGQLI--NPIYPLI- 293
Query: 836 YKPGWYWQIT-----------WRFLGPAIMSCILVSS---IICRFLKKPSYSAWNRAFLI 881
W + F + + I+ A R L+
Sbjct: 294 ----AAWLLAFSLLFFDLLHGLDFPINGVARFLYPIWLAIILILGALYTLCRATERKILL 349
Query: 882 PFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVI 941
+ ++I +PL L +L + V+ T +P+L I S L+ Y N++
Sbjct: 350 FILTLIIAPALPLILSDL----------VSVFITRNPYL----IPSYLILLLGVAYLNLL 395
Query: 942 ITWCFYYLFNSFSS 955
TW L S
Sbjct: 396 GTW----LTIGDLS 405
>gnl|CDD|216852 pfam02028, BCCT, BCCT family transporter.
Length = 484
Score = 30.6 bits (70), Expect = 8.5
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 776 LISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTND--IYEM 833
L L+ + G + + ++F +IG L + M +G + I+
Sbjct: 252 LALALLLFVLIVGPTLF---ILNTFVQSIGDYLQNFVRMSLWTDPFGDGGWLQGWTIF-- 306
Query: 834 TGYKPGWYWQITW 846
Y W W I W
Sbjct: 307 --Y---WAWWIAW 314
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 30.0 bits (68), Expect = 8.7
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 28/143 (19%)
Query: 1075 VWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILG 1134
L Q+ L FG I FG+ ++ + L A + + A+LG
Sbjct: 147 DLLVGLIQLLIILLLLFGLGIPFGNL------------LLLLLLFLLYGLAYIALGALLG 194
Query: 1135 FKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGA--------PFWSIIFFMMLLSL 1186
N+ + I F + +P PF++ I ++ +
Sbjct: 195 S-LFKNSEAAILVISILI-LLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIY 252
Query: 1187 GLGSQIG------ILEGVLCTIF 1203
G ++I +L GV+ +
Sbjct: 253 GDLAEILLSLIILLLFGVVLLLL 275
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 30.1 bits (68), Expect = 8.9
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 433 QEELSLCMMMRSSRTEPPETAGSGMLSATDDMIESLVCPPPPSDPPM 479
Q + ++ S + P + S +S + V PPPP PP
Sbjct: 147 QSNSTTSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPP 193
>gnl|CDD|218918 pfam06161, DUF975, Protein of unknown function (DUF975). Family of
uncharacterized bacterial proteins.
Length = 251
Score = 30.1 bits (68), Expect = 9.3
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 12/144 (8%)
Query: 806 LVLIALIEMLAVMFIYGHEKFTNDIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICR 865
L+LI LIE I + + + + +S I + R
Sbjct: 25 LLLILLIEFSLSFLISNIGSIGESSFLSITLLAYIFPLLVFLIGTALTISAIFYYLKLVR 84
Query: 866 FLKKPSYS------AWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPW 919
+KPS+ R +++LIL+GI LFL L +G L + + H
Sbjct: 85 RKEKPSFKESFASFKDKRF--GKLLLLLILKGIFLFLWSLIA----TIGLLIIIISSHLA 138
Query: 920 LGGVGISSCLVTFFVALYYNVIIT 943
L I L+ F + + ++++
Sbjct: 139 LSSSEIEDNLMVFGIGILISLLLI 162
>gnl|CDD|217024 pfam02417, Chromate_transp, Chromate transporter. Members of this
family probably act as chromate transporters. Members of
this family are found in both bacteria and
archaebacteria. The proteins are composed of one or two
copies of this region. The alignment contains two
conserved motifs, FGG and PGP.
Length = 169
Score = 29.4 bits (67), Expect = 9.6
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 799 SFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYKPGWYWQITWRFLGPAIMSCIL 858
+ T+G L + + +L + +Y +K + Q + PA++ IL
Sbjct: 75 ALVATLGFFLPSFLLILLLAPLYKR------------FKDSPWVQAFLAGVKPAVVGLIL 122
Query: 859 VSSIICRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIELGIG 902
++I KK + A ++L + ++ L G
Sbjct: 123 AAAI--SLAKKAVKDPLSLAIAALAFLLLAFFKLNPVIVILLAG 164
>gnl|CDD|217790 pfam03916, NrfD, Polysulphide reductase, NrfD. NrfD is an integral
transmembrane protein with loops in both the periplasm
and the cytoplasm. NrfD is thought to participate in the
transfer of electrons, from the quinone pool into the
terminal components of the Nrf pathway.
Length = 313
Score = 30.1 bits (68), Expect = 9.8
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 25/114 (21%)
Query: 839 GWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNR-----AFLIPFMVMLILEGIP 893
G + +G I + L+ +I+ + KK +N A L P V+
Sbjct: 12 GLPIAVYLFLIG--ISAGALILAILYKRFKKNEGKPFNLIIRTGALLAPLAVL-----AG 64
Query: 894 LFLIELGIGQKMRLGSL---GVWNTIHPWLGGVGISSCLVTFFVALYYNVIITW 944
L ++ +G+ R L +++I W GV ++LY V++ W
Sbjct: 65 LLILIFDLGRPWRFWKLLRYYNFSSIMSW--GV--------MLLSLYMVVLVLW 108
>gnl|CDD|239237 cd02911, arch_FMN, Archeal FMN-binding domain. This family of
archaeal proteins are part of the NAD(P)H-dependent
flavin oxidoreductase (oxidored) FMN-binding family that
reduce a range of alternative electron acceptors. Most
use FAD/FMN as a cofactor and NAD(P)H as electron donor.
Some contain 4Fe-4S cluster to transfer electron from
FAD to FMN. The specific function of this group is
unknown.
Length = 233
Score = 30.0 bits (68), Expect = 10.0
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 585 SRQLTD---AEKLSKVIIELIETERTYVKNLNGLLE-----NYLEPLKKETFLSGAEINA 636
+R+L E L +E IE E +K+ N L+ + LEPL A + A
Sbjct: 41 ARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNA-----AALVA 95
Query: 637 LFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQF 674
ILEI A RQ +VEA EA ++ S+F
Sbjct: 96 KNAAILEINAHCRQ--PEMVEAGAGEALLKDPERLSEF 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 81,784,525
Number of extensions: 8187918
Number of successful extensions: 9538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9356
Number of HSP's successfully gapped: 274
Length of query: 1613
Length of database: 10,937,602
Length adjustment: 110
Effective length of query: 1503
Effective length of database: 6,058,662
Effective search space: 9106168986
Effective search space used: 9106168986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (29.2 bits)