RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8107
(1613 letters)
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 229 bits (583), Expect = 5e-68
Identities = 117/236 (49%), Positives = 165/236 (69%), Gaps = 1/236 (0%)
Query: 1 FLSVKKWLL-RKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVD 59
+L K + +K+ ++EL +R WK YWV LKG TLLFY + ++AP+ + +
Sbjct: 16 WLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAE 75
Query: 60 GAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHRGKTG 119
+I+Q +PEHPK++++FCLS + GD YLFQA Q +LENWV +IHSACA+ FA+ GK
Sbjct: 76 DSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAKKHGKED 135
Query: 120 TLHLLQEEIFRLEKAIDSDNKLKHMADLQMSVLAEPETKQQINEQITQWEENLERLHCEQ 179
T+ LL+ + L + ID D+K+K MA+LQ+SV+++P+ ++ I QI QWE+NLE+ H +
Sbjct: 136 TVRLLKSQTRSLLQKIDMDSKMKKMAELQLSVVSDPKNRKAIENQIRQWEQNLEKFHMDL 195
Query: 180 FRLRCYMASLQNGELPNPKSLLTHVSRNTKCILNNLGVFTVSSFHAFICARSPSLL 235
FR+RCY+ASLQ GELPNPKSLL SR +K L LGV +VSSFHA +C+R S L
Sbjct: 196 FRMRCYLASLQGGELPNPKSLLAATSRPSKLALGRLGVLSVSSFHALVCSRDDSTL 251
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 225 bits (573), Expect = 2e-66
Identities = 127/253 (50%), Positives = 171/253 (67%), Gaps = 4/253 (1%)
Query: 1 FLSVKKWLLRKKHQ-IELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVD 59
L+VK +L+ KK++ +E A +R WK YWV LKG TL FY D R G ++ PKH + V+
Sbjct: 16 ALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVE 75
Query: 60 GAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHRGKTG 119
+I+Q +PEHPK+D++FCLS + GDA+LFQ Q ELENW+ +IHSACAAA ARH K
Sbjct: 76 NSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVARHHHKED 135
Query: 120 TLHLLQEEIFRLEKAIDSDNKLKHMADLQMSVLAEPETKQQINEQITQWEENLERLHCEQ 179
TL LL+ EI +LE+ ID D K+K M ++Q+S + + + K+ I +QI WE+NLE+ +
Sbjct: 136 TLRLLKSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDL 195
Query: 180 FRLRCYMASLQNGELPNPKSLLTHVSRNTKCILNNLGVFTVSSFHAFICARSPSLL---N 236
FR RCY+ASLQ GELPNPK LL SR TK + LG+F+VSSFHA + AR+ +
Sbjct: 196 FRFRCYLASLQGGELPNPKRLLAFASRPTKVAMGRLGIFSVSSFHALVAARTGEIGVRRR 255
Query: 237 NLLAGRGATKRRP 249
R A+KRR
Sbjct: 256 TQAMSRSASKRRS 268
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 208 bits (531), Expect = 2e-59
Identities = 109/186 (58%), Positives = 142/186 (76%)
Query: 585 SRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEI 644
RQL+DA+KL KVI EL+ETERTYVK+LN L+E YL+PL+KETFL+ E++ LFGN+ E+
Sbjct: 3 GRQLSDADKLRKVICELLETERTYVKDLNCLMERYLKPLQKETFLTQDELDVLFGNLTEM 62
Query: 645 VAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSK 704
V FQ +FL+ L + + D ++ QFK +LFS+G +FLYY + FKLYS+FCASH+K
Sbjct: 63 VEFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTK 122
Query: 705 AQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHC 764
KVL + + A + FL ++NPRQQHSSTLESYLIKPIQR+LKYPLLL++L LTD
Sbjct: 123 VPKVLVKAKTDTAFKAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAES 182
Query: 765 DEHLHL 770
+EH HL
Sbjct: 183 EEHYHL 188
Score = 149 bits (377), Expect = 6e-39
Identities = 80/193 (41%), Positives = 117/193 (60%), Gaps = 2/193 (1%)
Query: 1213 KPILTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGV 1272
L A+K M KVA HINEMQ+IHEE+GA+FD L + K+ DLS GDLL + V
Sbjct: 185 HYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTGEKKEVADLSMGDLLLHTSV 244
Query: 1273 EWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRY 1332
WLN LGK KK EL A FVFK+AVV + K+ +QKKKL+G E + R+
Sbjct: 245 IWLNPPASLGKWKKEPELAA--FVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRF 302
Query: 1333 QVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIR 1392
+ ++P +QVRA + D +++ + E++H++S+ + R E+V+ L S+ E R FLK++
Sbjct: 303 RHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVH 362
Query: 1393 QIIRESVRNMSIP 1405
I+R+ R +
Sbjct: 363 SILRDKHRRQLLK 375
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 205 bits (524), Expect = 9e-57
Identities = 81/351 (23%), Positives = 139/351 (39%), Gaps = 31/351 (8%)
Query: 878 AFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTI------HPWLGGVGISSCLVT 931
AF+IP+++ +L GIPL IE +G+ G I + + +G+ +
Sbjct: 42 AFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIP 101
Query: 932 FFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDV 991
VA+YY I +W + +P P+ L + + + + V
Sbjct: 102 LVVAIYYVYIESWTLGFAIKFLVGLVP-----EPPPNATDPDSILRPFKEFLY--SYIGV 154
Query: 992 SPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSS-GRVVYFTSMFP--YIVLTIFFIR 1048
E P + + L+ I I+++GI R P +I+ IR
Sbjct: 155 PKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKI--AMPTLFILAVFLVIR 212
Query: 1049 GITLP----GAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPN 1104
L A GL ++TP EKL DP VW+ A Q+F++ L FG++I + SY + +
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 272
Query: 1105 NNCVRDVIMVSICNALTAIYAS--VVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVF 1162
+ V + + N + + + A + F A +A A L FI
Sbjct: 273 QDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFG---VANAVAIA--KAGAFNLGFITL 327
Query: 1163 TQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRK 1213
+ G F ++F +L GL S I I++ ++ + + K RK
Sbjct: 328 PAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFL--EDELKLSRK 376
Score = 66.6 bits (163), Expect = 4e-11
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Query: 771 VGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDI 830
V I F + L D +AGTIG+V L E++ +I+G +K +I
Sbjct: 379 VLWTAAIVFFSAHL--VMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEI 436
Query: 831 YEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIPFMVMLILE 890
K + R++ PA ++ +LV K + W +++ L L
Sbjct: 437 NRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLF 496
Query: 891 GIPLFLI 897
L +
Sbjct: 497 LTFLVFL 503
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 185 bits (471), Expect = 2e-53
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 589 TDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQ 648
+ + V+ ++ETE Y K L +L YL PL+ LS A I+ L GN+ EI +FQ
Sbjct: 9 INKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQ 68
Query: 649 RQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFK-LYSSFCASHSKAQK 707
+ +Q+L E + +G FL + K LY ++CA+H A
Sbjct: 69 QMLVQSLEECTKLPEAQQ-------------RVGGCFLNLMPQMKTLYLTYCANHPSAVN 115
Query: 708 VLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEH 767
VL E ++ L EF+ ++ L + L KP R+ KYP LL++L + + +
Sbjct: 116 VL--TEHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDR 173
Query: 768 LHL 770
+
Sbjct: 174 QDI 176
Score = 41.1 bits (97), Expect = 0.001
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 1213 KPILTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFR 1249
+ + +++ + ++ E+++ E I R
Sbjct: 173 RQDIQKSMAAFKNLSAQCQEVRKRKELELQILTEAIR 209
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 175 bits (445), Expect = 6e-49
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 13/236 (5%)
Query: 552 KSAGEVTGFCRSPVETHRTSPTGSMANQSSLNPSRQLTDAE-KLSKVIIELIETERTYVK 610
G S T S S L+ LT E K I ELI TE YV
Sbjct: 40 GEVSGQVGLFPSNYVKLTTDMDPSQQWCSDLHLLDMLTPTERKRQGYIHELIVTEENYVN 99
Query: 611 NLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQ 670
+L + E + +PL + L+ E+ +F N E++ + L+ L +
Sbjct: 100 DLQLVTEIFQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRK----------K 149
Query: 671 SSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVL-HPNEGNQALQEFLSS-RNPR 728
S K + IG + H + Y FC+ ++ + +EF+
Sbjct: 150 MSGEKMPVKMIGDILSAQLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDP 209
Query: 729 QQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLI 784
+ L S+++KP+QR+ +YPL+++ + T + +H HL + L +
Sbjct: 210 RCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQV 265
Score = 35.1 bits (81), Expect = 0.16
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHE 1238
L AL+ E++ +NE R E
Sbjct: 251 LKHALEKAEELCSQVNEGVREKE 273
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 176 bits (448), Expect = 5e-48
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 578 NQSSLNPSRQLTDAE-KLSKVIIELIETERTYVKNLNGLLENYLEPLKKET-FLSGAEIN 635
N L R L + + + VI E++ TER Y+K+L + E YL+ +K S ++
Sbjct: 25 NSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLK 84
Query: 636 ALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLY 695
+FGNI +I FQ F+++L + N+ IG FL + + F +Y
Sbjct: 85 VIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLS------------EIGPCFLEHQDGFWIY 132
Query: 696 SSFCASHSKAQKVLHPNEGNQALQEFLSS-RNPRQQHSSTLESYLIKPIQRILKYPLLLQ 754
S +C +H A L + Q F + R +Q ++ +L+ P+Q+I KYPL L
Sbjct: 133 SEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLA 192
Query: 755 QLCNLTDPHCDEHLHLVGVVCLISFLVGLI 784
+L T ++ ++ + ++ + I
Sbjct: 193 ELLKYTAQDHSDYRYVAAALAVMRNVTQQI 222
Score = 88.0 bits (218), Expect = 4e-18
Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 26/219 (11%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWL 1275
+ AL M V + INE +R E I +D S +L+Y G + W+
Sbjct: 208 VAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGDDILDRS-SELIYTGEMAWI 266
Query: 1276 NISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVL 1335
+ + F+F +V CK+ L ++ L Y+
Sbjct: 267 Y-----QPYGRNQQRV--FFLFDHQMVL-CKKDLIRRDILY---------------YKGR 303
Query: 1336 VPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQII 1395
+ + + +V D F + + + TE+V++ E + +L+ R+
Sbjct: 304 IDMDKYEVIDIEDGRDDD-FNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREER 362
Query: 1396 RESVRNMSIPMTKPGVATQIVSNTLGRHSSTGKSAQEQS 1434
+ + I + + T+ R +S K Q +
Sbjct: 363 KMVQEDEKIGFEISENQKRQAAMTV-RKASKQKVTQRKW 400
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 174 bits (442), Expect = 1e-46
Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 14/233 (6%)
Query: 554 AGEVTGFCRSPVETHRTSPTGSMANQSSLNPSRQLTDAEKLSKVIIELIETERTYVKNLN 613
A V +P + Q + + + VI E++ TER Y+K+L
Sbjct: 79 ASFVRLRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQMRTNVINEILSTERDYIKHLR 138
Query: 614 GLLENYLEPLKKET-FLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSS 672
+ E Y+ +K S ++ +FGNI +I Q+ F++ L + E
Sbjct: 139 DICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLS----- 193
Query: 673 QFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQKVL-HPNEGNQALQEFLSSRNPRQQH 731
+G+ FL + F++YS +C +H A L + ++ + F + R ++
Sbjct: 194 -------ELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMI 246
Query: 732 SSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLI 784
+L+ +L+ P+Q+I KYPL L +L T P + + + + + LI
Sbjct: 247 DISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLI 299
Score = 78.8 bits (194), Expect = 5e-15
Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 33/186 (17%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCK----QPIDLSPGDLLYYGG 1271
+ AL M+ VA+ INE +R E I Q Q S + + + + +L+Y G
Sbjct: 285 VEAALHAMKNVAQLINERKRRLENIDKI-----AQWQSSIEDWEGEDLLVRSSELIYSGE 339
Query: 1272 VEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIR 1331
+ + K + F+F +++ CK+ L ++ L
Sbjct: 340 LTRVT-----QPQAKSQQRM--FFLFDHQLIY-CKKDLLRRDVLY--------------- 376
Query: 1332 YQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTI 1391
Y+ + + ++V D + + + T ++L E + +LK
Sbjct: 377 YKGRLDMDGLEVV-DLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAF 435
Query: 1392 RQIIRE 1397
+ +
Sbjct: 436 AREREQ 441
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 169 bits (430), Expect = 3e-46
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 584 PSRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSG--AEINALFGNI 641
++ E+ V+ EL+ETE+ YV +L ++E Y+ + + +FGNI
Sbjct: 3 EEQKKKALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNI 62
Query: 642 LEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCAS 701
+I + R + ++ + D + F+ + +Y +C +
Sbjct: 63 QQIYEWHRDYFLQELQRCLKDPD---------------WLAQLFIKHERRLHMYVVYCQN 107
Query: 702 HSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTD 761
K++ V+ ++ + + H L LIKP+QRI+KY LLL+ +
Sbjct: 108 KPKSEHVV-----SEFGDSYFEELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYN 162
Query: 762 PHCDEHLHL 770
+ L
Sbjct: 163 RAGMDTADL 171
Score = 78.4 bits (193), Expect = 3e-15
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 33/182 (18%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWL 1275
L +A++ M V + N+M + G + + + G LL
Sbjct: 171 LEQAVEVMCFVPKRCNDMMTLGRLRG-------------FEGKLT-AQGKLLGQDTFWVT 216
Query: 1276 NISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVL 1335
+G E F+F+ ++F + + Y+
Sbjct: 217 EPEAGGLLSSRGRERR--VFLFEQIIIF-SEALGGGVR----------GGTQPGYVYKNS 263
Query: 1336 VPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQII 1395
+ V+ + + + D L S+ + YVL + A++K + QI+
Sbjct: 264 IKVSCLGLEGNLQGDPCRFALT------SRGPEGGIQRYVLQAADPAISQAWIKHVAQIL 317
Query: 1396 RE 1397
Sbjct: 318 ES 319
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 168 bits (428), Expect = 2e-45
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 581 SLNPSRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGN 640
S+ ++T+ +K + E+ +TE Y L + +++++PL++ FL ++ +F N
Sbjct: 13 SVPTPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR--FLKPQDMETIFVN 70
Query: 641 ILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCA 700
I E+ + FL+ L +AL ++ F+ Y F +Y +C+
Sbjct: 71 IEELFSVHTHFLKELKDALAGPGAT--------------TLYQVFIKYKERFLVYGRYCS 116
Query: 701 SHSKAQKVL-HPNEGNQALQEFL-SSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCN 758
A K L + +Q L TL L+ P+QR+LKY LLLQ+L
Sbjct: 117 QVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVK 176
Query: 759 LTDPHCD 765
T +
Sbjct: 177 HTQDATE 183
Score = 78.7 bits (194), Expect = 3e-15
Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 32/182 (17%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWL 1275
L AL M +A+ +NE++R +E I + + ++ Q + + G G ++
Sbjct: 187 LRLALDAMRDLAQCVNEVKRDNETLRQITNF--QLSIENLDQSLA-NYGRPKIDGELKIT 243
Query: 1276 NISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVL 1335
++ + + + F+ A++ CK R +
Sbjct: 244 SVER-----RSKTDRY--AFLLDKALLI-CKRR---GDSYD---------------LKAS 277
Query: 1336 VPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQII 1395
V + QVR S+ + D+ + L + + Y L T E + +++ I
Sbjct: 278 VNLHSFQVRDDSSGERDNKKWSHMFLLIE---DQGAQGYELFFKTRELKKKWMEQFEMAI 334
Query: 1396 RE 1397
Sbjct: 335 SN 336
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 167 bits (424), Expect = 2e-43
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 18/207 (8%)
Query: 561 CRSPVETHRTSPTGSMANQSSLNPSRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYL 620
C E + ++ ++T+ +K + E+ +TE Y L + +++L
Sbjct: 165 CVENEEAEGDEIYEDLMRSEPVSMPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFL 224
Query: 621 EPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFS 680
+PL++ FL +I +F NI +++ FL+ + EAL +
Sbjct: 225 KPLQR--FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGTPGAAN-------------- 268
Query: 681 IGSAFLYYVNHFKLYSSFCASHSKAQKVL-HPNEGNQALQEFLSS-RNPRQQHSSTLESY 738
+ F+ Y F +Y +C+ A K L + +Q L TL
Sbjct: 269 LYQVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDL 328
Query: 739 LIKPIQRILKYPLLLQQLCNLTDPHCD 765
L+ P+QR+LKY LLLQ+L T +
Sbjct: 329 LMVPMQRVLKYHLLLQELVKHTQEAME 355
Score = 82.0 bits (202), Expect = 6e-16
Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 32/182 (17%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWL 1275
L AL M +A+ +NE++R +E I + F+ ++ Q + G G ++
Sbjct: 359 LRLALDAMRDLAQCVNEVKRDNETLRQITN--FQLSIENLDQSLA-HYGRPKIDGELKIT 415
Query: 1276 NISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVL 1335
++ + ++ + F+ A++ CK R +
Sbjct: 416 SVER-----RSKMDRY--AFLLDKALLI-CKRR---GDSYD---------------LKDF 449
Query: 1336 VPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQII 1395
V + QVR S+ D D+ + L + + Y L T E + +++ I
Sbjct: 450 VNLHSFQVRDDSSGDRDNKKWSHMFLLIE---DQGAQGYELFFKTRELKKKWMEQFEMAI 506
Query: 1396 RE 1397
Sbjct: 507 SN 508
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 163 bits (414), Expect = 1e-42
Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 13/213 (6%)
Query: 575 SMANQSSLNPSRQLTDAE-KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAE 633
S ++ + E K I ELI+TE Y+ +L ++E + + + + FL+ E
Sbjct: 8 SSGRENLYFQGDTMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAESGFLTEGE 67
Query: 634 INALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFK 693
+ +F N E++ + L+ L + + IG ++H +
Sbjct: 68 MALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQM----------IGDILAAELSHMQ 117
Query: 694 LYSSFCASHSKAQKVL-HPNEGNQALQEFLSS-RNPRQQHSSTLESYLIKPIQRILKYPL 751
Y FC+ +L + + +EFL + + L S+L+KP+QRI +YPL
Sbjct: 118 AYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPL 177
Query: 752 LLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLI 784
L++ + T +H L + L +
Sbjct: 178 LIRSILENTPESHADHSSLKLALERAEELCSQV 210
Score = 90.8 bits (225), Expect = 9e-19
Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 20/252 (7%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWL 1275
L AL+ E++ +NE R E + + + + + G L
Sbjct: 196 LKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCL--GPRKL 253
Query: 1276 NISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVL 1335
S L K K ELH F+F ++ + SN + Y+
Sbjct: 254 LHSGKLYKTKSNKELH--GFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNA-QFKMYKTP 310
Query: 1336 VPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQII 1395
+ + EV V+ + D + H+ ++VY L R A+++ I+
Sbjct: 311 IFLNEVLVKLPT----DPSSDEPVFHISHI-----DRVYTLRTDNINERTAWVQKIKAAS 361
Query: 1396 RESVRNMSIPMTKPGVATQIVSNTLGRHSSTGKSAQEQSMNKSSLNPGCSQTLEKSKKPP 1455
+ + K A ++ +GR A E K + G S +
Sbjct: 362 EQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPN---GKSNPYCEI---S 415
Query: 1456 RPPQRHSSGSIE 1467
Q +++ +I+
Sbjct: 416 MGSQSYTTRTIQ 427
Score = 30.0 bits (67), Expect = 7.3
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 53 KHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
K I ++ +++ + + +F +S Y + E WV I +A
Sbjct: 308 KTPIFLNEVLVKLPTDPSSDEPVFHISHI-DRVYTLRTDNINERTAWVQKIKAA 360
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 156 bits (397), Expect = 7e-42
Identities = 43/201 (21%), Positives = 88/201 (43%), Gaps = 15/201 (7%)
Query: 586 RQLTDAE-KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEI 644
+ LT E K + I EL + E +++L + Y +P+ K + ++ E+N +FG + +
Sbjct: 11 QVLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKLSIMTEQELNQIFGTLDSL 70
Query: 645 VAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSK 704
+ + L L + + + +G + ++ Y S+C++
Sbjct: 71 IPLHEELLSQLRDVRKPD-------------GSTEHVGPILVGWLPCLSSYDSYCSNQVA 117
Query: 705 AQKVLHPNEGNQALQEFLSS-RNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPH 763
A+ +L + + +Q+FL L ++L P R++KYPLLL+++ T
Sbjct: 118 AKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPND 177
Query: 764 CDEHLHLVGVVCLISFLVGLI 784
+ HL + +I +V I
Sbjct: 178 NPDQQHLEEAINIIQGIVAEI 198
Score = 49.4 bits (118), Expect = 6e-06
Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 24/184 (13%)
Query: 1213 KPILTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDL-SPG-DLLYYG 1270
+ L EA+ ++ + IN E + R Q L L +G
Sbjct: 181 QQHLEEAINIIQGIVAEINTKTGESE----CRYYKERLLYLEEGQKDSLIDSSRVLCCHG 236
Query: 1271 GVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCS-NEVEI 1329
+ K +G++LH F+F+ +V + + ++ + + ++ +
Sbjct: 237 EL----------KNNRGVKLH--VFLFQEVLV-ITRAVTHNEQLCYQLYRQPIPVKDLTL 283
Query: 1330 IRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLK 1389
Q +R + + + + + + + L + + +L
Sbjct: 284 EDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFK----NGSQSQTHSLQANDTFNKQQWLN 339
Query: 1390 TIRQ 1393
IRQ
Sbjct: 340 CIRQ 343
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 155 bits (393), Expect = 9e-42
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 587 QLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEI----NALFGNIL 642
+ A + ++ ELI+TE+ YV++L ++ YL + I +FGN+
Sbjct: 3 KRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQ 62
Query: 643 EIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASH 702
EI F +E E + +G F+ + + F++Y ++C +
Sbjct: 63 EIYEFHNNIFLKELEKYEQLPE---------------DVGHCFVTWADKFQMYVTYCKNK 107
Query: 703 SKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDP 762
+ +++ + + R ++++ SYLIKP+QRI KY LLL++L +
Sbjct: 108 PDSTQLI-----LEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEE 162
Query: 763 HCDEH 767
E
Sbjct: 163 GKGEI 167
Score = 76.8 bits (189), Expect = 5e-15
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 39/185 (21%)
Query: 1213 KPILTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGV 1272
K + + L+ M V + N+ + G + I+ S G+L+
Sbjct: 164 KGEIKDGLEVMLSVPKRANDAMHLSMLEG-------------FDENIE-SQGELILQE-- 207
Query: 1273 EWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRY 1332
+ D I+KG E H F+F+ ++VF KE + Y
Sbjct: 208 -SFQVWDPKTLIRKGRERH--LFLFEMSLVF-SKEVKDSSGR-------------SKYLY 250
Query: 1333 QVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIR 1392
+ + +E+ V D LW ++ VL S+ E + ++K IR
Sbjct: 251 KSKLFTSELGVTEHVEGDPCKFALW------VGRTPTSDNKIVLKASSIENKQDWIKHIR 304
Query: 1393 QIIRE 1397
++I+E
Sbjct: 305 EVIQE 309
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 154 bits (391), Expect = 5e-41
Identities = 30/180 (16%), Positives = 63/180 (35%), Gaps = 17/180 (9%)
Query: 593 KLSKVIIELIETERTYVKNLNGLLENYLEPLKKET-FLSGAEINALFGNILEIVAFQRQF 651
++ + R Y++ LN +++ + EP + S ++ +F I++I +
Sbjct: 3 TYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKL 62
Query: 652 LQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVN--HFKLYSSFCASHSKAQKVL 709
L ++ + +E + +GS F F Y S+ +
Sbjct: 63 LGHIEDTVEMTDEGSPHPL----------VGSCFEDLAEELAFDPYESYARDILRPGFHD 112
Query: 710 HP----NEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCD 765
++ AL ++ L L+ P+ L Y LL+QL ++ D
Sbjct: 113 RFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQED 172
Score = 63.0 bits (153), Expect = 2e-10
Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 33/197 (16%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQP-------------IDLS 1262
L +A+ + V + ++ + + R + + K ID
Sbjct: 176 LKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGW 235
Query: 1263 PGDLLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKG 1322
G + E++ + L ++ E H F+F ++ CK Q + + +
Sbjct: 236 EGKDIGQCCNEFI-MEGTLTRVGAKHERH--IFLFDGLMIC-CKSNHGQPRLPGASNAE- 290
Query: 1323 CSNEVEIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAE 1382
R + + +VQ+ + H I + E + S +AE
Sbjct: 291 -------YRLKEKFFMRKVQINDKDDTNEYKHAFE--------IILKDENSVIFSAKSAE 335
Query: 1383 FRNAFLKTIRQIIRESV 1399
+N ++ + + S
Sbjct: 336 EKNNWMAALISLQYRST 352
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 147 bits (372), Expect = 2e-38
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 25/183 (13%)
Query: 589 TDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGA------EINALFGNIL 642
+ A V+ EL++TER YV+ L +LE Y + + N LFGN+
Sbjct: 7 SLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNME 66
Query: 643 EIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASH 702
EI F + +E+ + + +G FL + F++Y +C +
Sbjct: 67 EIYHFHNRIFLRELESCIDCPE---------------LVGRCFLERMEEFQIYEKYCQNK 111
Query: 703 SKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDP 762
+++ + F + H +L+SYL+KP+QRI KY LLL+++ +
Sbjct: 112 PRSESLWRQCSDCP----FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKH 167
Query: 763 HCD 765
Sbjct: 168 CEG 170
Score = 80.0 bits (197), Expect = 9e-16
Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 37/189 (19%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVE-W 1274
L EAL + + + +N+ + G + G LL G W
Sbjct: 174 LQEALSSILGILKAVNDSMHLIAITG-------------YDGNLG-DLGKLLMQGSFSVW 219
Query: 1275 LNISDFLGKIKKGLELHAM---CFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIR 1331
+ K+K+ M F+ + AV+F CK+R +
Sbjct: 220 TDHKKGHTKVKELARFKPMQRHLFLHEKAVLF-CKKREENGEGYEKAP---------SYS 269
Query: 1332 YQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTI 1391
Y+ + +T V + + D +W E+VY++ T E + A++ I
Sbjct: 270 YKQSLNMTAVGITENVKGDTKKFEIWY---------NAREEVYIIQAPTPEIKAAWVNAI 320
Query: 1392 RQIIRESVR 1400
R+++ ++
Sbjct: 321 RKVLTSQLQ 329
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 143 bits (361), Expect = 2e-36
Identities = 38/216 (17%), Positives = 72/216 (33%), Gaps = 24/216 (11%)
Query: 580 SSLNPSRQLTDAEKLSKVIIELIETERTYVKNLNGLLENYLEPLKKET---------FLS 630
S + + EL+ +E+ YV+ L L ++ + + L+
Sbjct: 9 SGRENLYFQGGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLA 68
Query: 631 GAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYVN 690
E+ + I + L+ L E L N + FL
Sbjct: 69 REELRQGLSELPAIHDLHQGILEELEERLSNWESQQ-------------KVADVFLAREQ 115
Query: 691 HFKLYSSFCASHSKAQKVLHPN-EGNQALQEFLSSRNPRQQHSS-TLESYLIKPIQRILK 748
F +++ + +L N + L + Q S T + L++ +QR+ +
Sbjct: 116 GFDHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRLLRVVQRLFQ 175
Query: 749 YPLLLQQLCNLTDPHCDEHLHLVGVVCLISFLVGLI 784
Y +LL N P E+ + G + LIS +
Sbjct: 176 YQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRA 211
Score = 47.7 bits (113), Expect = 2e-05
Identities = 22/211 (10%), Positives = 56/211 (26%), Gaps = 40/211 (18%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWL 1275
AL + KV + N+ E + +H + + + L G + +
Sbjct: 197 TQGALSLISKVTDRANDSMEQGENLQKLVH---IEHSVRGQGDLLQPGREFLKEGTLMKV 253
Query: 1276 NISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVL 1335
K H F+ +++ + K + +
Sbjct: 254 T-------GKNRRPRH--LFLMNDVLLY-TYPQKDGKYR-----------------LKNT 286
Query: 1336 VPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQII 1395
+ V ++V + + +E +LS S+ R+ + + + +
Sbjct: 287 LAVANMKVSRPVMEKVPYAL----------KIETSESCLMLSASSCAERDEWYGCLSRAL 336
Query: 1396 RESVRNMSIPMTKPGVATQIVSNTLGRHSST 1426
E + ++ V +
Sbjct: 337 PEDYKAQALAAFHHSVEIRERLGVSLGERPP 367
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 135 bits (342), Expect = 2e-34
Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 24/209 (11%)
Query: 586 RQLTDAE-KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEI 644
LT E +VI EL TE ++++ L L + + +KKE + E+ LF N+ E+
Sbjct: 13 AGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQRMKKENLMPREELARLFPNLPEL 72
Query: 645 VAFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYV------NHFKLYSSF 698
+ + + + + E I+ I L ++ + F
Sbjct: 73 IEIHNSWCEAMKKLREEGP-------------IIKEISDLMLARFDGPAREELQQVAAQF 119
Query: 699 CASHSKAQKVLHP-NEGNQALQEFLS--SRNPRQQHSSTLESYLIKPIQRILKYPLLLQQ 755
C+ S A +++ Q F+ +P+ + L +I +QR+ KYPLLL+
Sbjct: 120 CSYQSIALELIKTKQRKESRFQLFMQEAESHPQCR-RLQLRDLIISEMQRLTKYPLLLES 178
Query: 756 LCNLTDPHCDEHLHLVGVVCLISFLVGLI 784
+ T+ EH L ++ +
Sbjct: 179 IIKHTEGGTSEHEKLCRARDQCREILKYV 207
Score = 50.2 bits (120), Expect = 3e-06
Identities = 30/191 (15%), Positives = 73/191 (38%), Gaps = 27/191 (14%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFD---HLFRQHQKSCKQP-------IDLSPGD 1265
L A ++ +++NE + E + L + P +DL+
Sbjct: 193 LCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRK 252
Query: 1266 LLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSN 1325
+++ G + W D K L+LH + + +V L K+ + K + G S+
Sbjct: 253 MIHEGPLTWRISKD------KTLDLH--VLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSD 304
Query: 1326 EVEIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRN 1385
+ + ++ + V +R+ + + +I + ++Y L T+ +N
Sbjct: 305 SKQT--FSPVLKLNAVLIRSVA----TDKRAFFIICTS---KLGPPQIYELVALTSSDKN 355
Query: 1386 AFLKTIRQIIR 1396
+++ + + +R
Sbjct: 356 TWMELLEEAVR 366
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 135 bits (341), Expect = 8e-34
Identities = 50/252 (19%), Positives = 88/252 (34%), Gaps = 35/252 (13%)
Query: 555 GEVTGFCRSPVETHRTSPTGSMANQSSLNPSRQ-------------LTDAE-KLSKVIIE 600
GFC + H + P Q LT E +VI E
Sbjct: 11 SPSLGFCTDTLLPHLLEDDLGQLSDLEPEPDAQNWQHTVGKDVVAGLTQREIDRQEVINE 70
Query: 601 LIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQNLVEALE 660
L TE ++++ L L + + +KKE + E+ LF N+ E++ + + + + E
Sbjct: 71 LFVTEASHLRTLRVLDLIFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLRE 130
Query: 661 NEADFHHFDQSSQFKNILFSIGSAFLYYV------NHFKLYSSFCASHSKAQKVL-HPNE 713
I+ I L ++ + FC+ S A +++
Sbjct: 131 EGP-------------IIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQR 177
Query: 714 GNQALQEFLSS-RNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDEHLHLVG 772
Q F+ + Q L +I +QR+ KYPLLL+ + T+ EH L
Sbjct: 178 KESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCR 237
Query: 773 VVCLISFLVGLI 784
++ +
Sbjct: 238 ARDQCREILKYV 249
Score = 51.1 bits (122), Expect = 2e-06
Identities = 31/196 (15%), Positives = 76/196 (38%), Gaps = 27/196 (13%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFD---HLFRQHQKSCKQP-------IDLSPGD 1265
L A ++ +++NE + E + L + P +DL+
Sbjct: 235 LCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRK 294
Query: 1266 LLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSN 1325
+++ G + W D K L+LH + + +V L K+ + K + G S+
Sbjct: 295 MIHEGPLTWRISKD------KTLDLH--VLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSD 346
Query: 1326 EVEIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRN 1385
+ + ++ + V +R+ + D + +I + ++Y L T+ +N
Sbjct: 347 SKQT--FSPVLKLNAVLIRSVAT---DKRAFF-IICTS---KLGPPQIYELVALTSSDKN 397
Query: 1386 AFLKTIRQIIRESVRN 1401
+++ + + +R + +
Sbjct: 398 TWMELLEEAVRNAHHH 413
Score = 31.0 bits (70), Expect = 3.5
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 53 KHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGD-AYLFQAPCQVELENWVNSIHSACAAAF 111
++ ++ +++ + + +I C S Y A + W+ + A A
Sbjct: 352 SPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAH 411
Query: 112 ARH 114
H
Sbjct: 412 HHH 414
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 131 bits (330), Expect = 9e-33
Identities = 39/207 (18%), Positives = 81/207 (39%), Gaps = 21/207 (10%)
Query: 587 QLTDAE-KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIV 645
L E K +VI EL TER +V+ L L + + + + +E LS +E+ +F N+ +I+
Sbjct: 17 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILSPSELRKIFSNLEDIL 76
Query: 646 AFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYV------NHFKLYSSFC 699
+ + + +++ IG L + ++FC
Sbjct: 77 QLHIGLNEQMKAVRKRNET-----------SVIDQIGEDLLTWFSGPGEEKLKHAAATFC 125
Query: 700 ASHSKAQKVL-HPNEGNQALQEFLSS-RNPRQQHSSTLESYLIKPIQRILKYPLLLQQLC 757
++ A +++ + + Q F+ + L+ + +QR+ KYPLLL +
Sbjct: 126 SNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIA 185
Query: 758 NLTDPHCDEHLHLVGVVCLISFLVGLI 784
T+ E + ++ +
Sbjct: 186 KYTEWP-TEREKVKKAADHCRQILNFV 211
Score = 46.8 bits (111), Expect = 4e-05
Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 28/192 (14%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEY---GAIFDHLFRQHQKSCKQP-------IDLSPGD 1265
+ +A ++ +N+ + E L K + P +DL+
Sbjct: 197 VKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLTKRK 256
Query: 1266 LLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSN 1325
+++ G + W D K ++L+ + ++ L +++ + L S S
Sbjct: 257 MIHEGPLVWKVNRD------KTIDLY--TLLL-EDILVLLQKQ-DDRLVLRCHSKILAST 306
Query: 1326 EVEIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRN 1385
+ ++ ++ V VR A D + F+ + +QI Y L T +
Sbjct: 307 ADSKHTFSPVIKLSTVLVR-QVATDNKALFVISMSDNGAQI-------YELVAQTVSEKT 358
Query: 1386 AFLKTIRQIIRE 1397
+ I ++
Sbjct: 359 VWQDLICRMAAS 370
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 128 bits (324), Expect = 5e-32
Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 22/207 (10%)
Query: 587 QLTDAE-KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIV 645
L ++ K +VI EL+ TE +V+ L L + + +P+ + F E+ +F ++ E++
Sbjct: 20 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELI 79
Query: 646 AFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYV------NHFKLYSSFC 699
FL L++ + IG L K+ S FC
Sbjct: 80 EVHSLFLDRLMKRRQESGYLIE------------EIGDVLLARFDGAEGSWFQKISSRFC 127
Query: 700 ASHSKAQKVLHP-NEGNQALQEFLSS-RNPRQQHSSTLESYLIKPIQRILKYPLLLQQLC 757
+ S A + L + F+ + + L+ + +QR+ KYPLLLQ +
Sbjct: 128 SRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIG 187
Query: 758 NLTDPHCDEHLHLVGVVCLISFLVGLI 784
T+ E + ++ +
Sbjct: 188 QNTEEP-TEREKVELAAECCREILHHV 213
Score = 48.7 bits (116), Expect = 9e-06
Identities = 31/200 (15%), Positives = 70/200 (35%), Gaps = 32/200 (16%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEY---GAIFDHLFRQHQKSCKQP-------IDLSPGD 1265
+ A + ++ H+N+ R E+ L H + P +D++
Sbjct: 199 VELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKK 258
Query: 1266 LLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSN 1325
L++ G + W D K +E+H + ++ L ++ R K + +
Sbjct: 259 LVHEGPLTWRVTKD------KAVEVH--VLLLDDLLLLLQRQDERLLLKSHSRTLTPTPD 310
Query: 1326 EVEIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRN 1385
++R ++ +T R + H + ++ Q + +Y L T R
Sbjct: 311 GKTMLRP--VLRLTSAMTREVA----TDHKAFYVLFTWDQEAQ----IYELVAQTVSERK 360
Query: 1386 AFLKTIRQIIRESVRNMSIP 1405
+ I E+ ++ +P
Sbjct: 361 NWCAL----ITETAGSLKVP 376
Score = 29.9 bits (67), Expect = 7.2
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 55 LIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
++ + A+ + + K Y+ Y A E +NW I
Sbjct: 318 VLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITET 369
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 132 bits (332), Expect = 5e-32
Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 22/207 (10%)
Query: 587 QLTDAE-KLSKVIIELIETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIV 645
L ++ K +VI EL+ TE +V+ L L + + +P+ + F E+ +F ++ E++
Sbjct: 173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELI 232
Query: 646 AFQRQFLQNLVEALENEADFHHFDQSSQFKNILFSIGSAFLYYV------NHFKLYSSFC 699
FL L++ + ++ IG L K+ S FC
Sbjct: 233 EVHSLFLDRLMKRRQESGY------------LIEEIGDVLLARFDGAEGSWFQKISSRFC 280
Query: 700 ASHSKAQKVL-HPNEGNQALQEFLSS-RNPRQQHSSTLESYLIKPIQRILKYPLLLQQLC 757
+ S A + L + F+ + + L+ + +QR+ KYPLLLQ +
Sbjct: 281 SRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIG 340
Query: 758 NLTDPHCDEHLHLVGVVCLISFLVGLI 784
T+ E + ++ +
Sbjct: 341 QNTEEP-TEREKVELAAECCREILHHV 366
Score = 50.1 bits (119), Expect = 5e-06
Identities = 28/188 (14%), Positives = 64/188 (34%), Gaps = 28/188 (14%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEY---GAIFDHLFRQHQKSCKQP-------IDLSPGD 1265
+ A + ++ H+N+ R E+ L H + P +D++
Sbjct: 352 VELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKK 411
Query: 1266 LLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSN 1325
L++ G + W K +E+H + ++ L ++ R K + +
Sbjct: 412 LVHEGPLTWRVTK------DKAVEVH--VLLLDDLLLLLQRQDERLLLKSHSRTLTPTPD 463
Query: 1326 EVEIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRN 1385
++R ++ +T R + H + ++ Q + +Y L T R
Sbjct: 464 GKTMLRP--VLRLTSAMTREVA----TDHKAFYVLFTWDQEAQ----IYELVAQTVSERK 513
Query: 1386 AFLKTIRQ 1393
+ I +
Sbjct: 514 NWCALITE 521
Score = 31.6 bits (71), Expect = 2.6
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 3/82 (3%)
Query: 28 VCLKGTTLLFYPCDSREGRSVDAAPKHL---IIVDGAIMQPIPEHPKRDYIFCLSTAFGD 84
+ + L SR L + + A+ + + K Y+
Sbjct: 441 LLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQ 500
Query: 85 AYLFQAPCQVELENWVNSIHSA 106
Y A E +NW I
Sbjct: 501 IYELVAQTVSERKNWCALITET 522
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 101 bits (253), Expect = 2e-25
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 9 LRKKHQIELARK---RGWKGYWVCLKGTTLLFYPCDSREGRS---VDAAPKHLIIVDGAI 62
LR+K ++ RK W YWV L G TLL+Y S G + P + + G +
Sbjct: 7 LRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWM 66
Query: 63 MQPIPEHPKRDYIFCLS-TAFGDAYLFQAPCQVELENWVNSIHSACAAA 110
+Q P+ P+ IF L+ G+ Y FQ + W + AC ++
Sbjct: 67 VQL-PDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 98.9 bits (246), Expect = 2e-24
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 7 WLLRKKHQIELARK---RGWKGYWVCLKGTTLLFYPC--DSREGRSVDAAPKHLIIVDGA 61
++ RK +K R W ++ K + FY + + + + A
Sbjct: 13 YVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNA 72
Query: 62 IMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAA 110
++ ++ K+ ++ + A G +L QA E+ WV S+ + +
Sbjct: 73 AIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDST 121
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 98.1 bits (244), Expect = 2e-24
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 7 WLLRKKHQIEL---ARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIM 63
+L RK A R W + + + FY + + + + AI
Sbjct: 4 FLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAIC 63
Query: 64 QPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+ ++ K+ ++F L + G+ YLFQA E+ W+ +I SA
Sbjct: 64 EVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 98.2 bits (244), Expect = 3e-24
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 349 VEVCAKILYQVELQRT-TLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLI 407
+E+C K+ + ++++ T +GFS+ + + R YV+ V++ +A GL
Sbjct: 9 IEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRR-----LYVNSVKETGLASKKGLK 63
Query: 408 KGDEIMVINGAIVSDLDMMYLESVLQE-ELSLCMMMRSSRTEPPETAGS 455
GDEI+ IN L+ L+ L + L L + E E+ S
Sbjct: 64 AGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGVESGPS 112
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 98.0 bits (244), Expect = 4e-24
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 1 FLSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSV-----DAAPKHL 55
L++ K + ++ W WV L G +L+FY S + P+
Sbjct: 17 LLNMTKIAQGGRKL-----RKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESS 71
Query: 56 IIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107
+ + GA + R + + T G +L Q+ + EL W ++ +
Sbjct: 72 VDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVI 123
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 97.3 bits (242), Expect = 7e-24
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 7 WLLRKKHQIELARK---RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIM 63
L RK+ +K R W+ + L+ +L FY V + + + A
Sbjct: 13 MLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQG 72
Query: 64 QPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAA 110
++ KR ++F L G YLFQA + E+ +W+ +++A A+
Sbjct: 73 SVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG 119
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 92.7 bits (230), Expect = 1e-22
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 353 AKILYQVELQRT-TLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDE 411
K+ + + ++++ T +GFS+ + + R YV+ V++ +A GL GDE
Sbjct: 4 GKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRR-----LYVNSVKETGLASKKGLKAGDE 58
Query: 412 IMVINGAIVSDLDMMYLESVLQEELSLCMMMRS 444
I+ IN L+ L+ L + SL +++R+
Sbjct: 59 ILEINNRAADALNSSMLKDFLSQP-SLGLLVRT 90
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 90.7 bits (225), Expect = 2e-21
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 10/109 (9%)
Query: 8 LLRKKHQIEL---ARKRGWKGYWVCLKGTTLLFY------PCDSREGRSVDAAPKHLIIV 58
+L + + RK+ W W L+G L F+ S + P++ + +
Sbjct: 13 VLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVEL 72
Query: 59 DGA-IMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
GA + + R + L + G YL Q + + W +I
Sbjct: 73 RGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 99.5 bits (247), Expect = 6e-21
Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 18/215 (8%)
Query: 559 GFCRSPVETHRTSPTGSMANQSSLNPSRQLTDAEKL-SKVIIELIETERTYVKNLNGLLE 617
C V N SL T E+ ++ + R Y++ LN +++
Sbjct: 165 AMCADKVLMDMFHQDVEDINILSLTDEEPSTSGEQTYYDLVKAFMAEIRQYIRELNLIIK 224
Query: 618 NYLEPLKKET-FLSGAEINALFGNILEIVAFQRQFLQNLVEALENEADFHHFDQSSQFKN 676
+ EP + S ++ +F I++I + L ++ + +E +
Sbjct: 225 VFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPL------ 278
Query: 677 ILFSIGSAFLYYVNH--FKLYSSFCASHSKAQKVLHPNE--GNQALQEFLSSRNPRQQHS 732
+GS F F Y S+ + +L S + +
Sbjct: 279 ----VGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEA 334
Query: 733 S--TLESYLIKPIQRILKYPLLLQQLCNLTDPHCD 765
L L+ P+ L Y LL+QL ++ D
Sbjct: 335 VQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQED 369
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 86.0 bits (212), Expect = 3e-19
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 7 WLLRKKHQIELARK-----RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGA 61
WL + + ++ R WK +V L+G +L Y + ++ + + I V+
Sbjct: 8 WLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYK--DKREQTTPSEEEQPISVNAC 65
Query: 62 IMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAA 110
++ KR +F L+T+ + LFQA + ++ W+ +I +
Sbjct: 66 LIDISYSETKRKNVFRLTTSDCE-CLFQAEDRDDMLAWIKTIQESSNLN 113
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 74.0 bits (182), Expect = 9e-16
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 11/100 (11%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L R K K+ WK W +K L Y D A + G + +
Sbjct: 13 YLYRSKG-----SKKPWKHLWFVIKNKVLYTYAASE------DVAALESQPLLGFTVTLV 61
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+ +F L Y+F+A + W+++
Sbjct: 62 KDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.5 bits (180), Expect = 5e-13
Identities = 112/689 (16%), Positives = 199/689 (28%), Gaps = 256/689 (37%)
Query: 561 CRSPVETH---RTS---PTGS--MANQ------SSL-NPSRQLTDAEKLSKVIIELI--- 602
R +H PT S +A+Q L P+ ++ + EL+
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA-ELVGKF 64
Query: 603 ------ETERTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEI----VAFQRQFL 652
E + V + +L L + +L G +I+AL +L+ + ++ +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 653 QNLVEALENEAD-FHHFDQSSQFKNILFSIGSAFLYYV--------NHFK----LYSSF- 698
+N + A F S+ F+ + G+A L + ++F+ LY ++
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 699 ----------------CASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIK- 741
+ + + +G + E+L NP + YL+
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLN-ILEWL--ENPSNTPD---KDYLLSI 234
Query: 742 PIQRILKYPLL-LQQL------CNLTDPHCDEHL-HLVGVVCLISFLVGLIFTTGAGEYW 793
PI PL+ + QL L E +L G LV + W
Sbjct: 235 PIS----CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-W 289
Query: 794 LKLFDSFAGTIGLVLIALIEMLAVMFIYG---HEKFTNDIYEMTGYKPGWYWQITWRFLG 850
+SF +++ + + V+F G +E + P L
Sbjct: 290 ----ESF-------FVSVRKAITVLFFIGVRCYEAY-----------PN-------TSLP 320
Query: 851 PAIMSCILVSSIICRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRLGSL 910
P+I+ L ++ PS ML + + ++ + +
Sbjct: 321 PSILEDSLENNE-----GVPSP-------------MLSISNLTQEQVQDYVNKT------ 356
Query: 911 GVWNTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTI 970
N+ P V IS L N
Sbjct: 357 ---NSHLPAGKQVEIS----------------------LVNG------------------ 373
Query: 971 IPECELSSETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQS---- 1026
L VS G P+ L L L QS
Sbjct: 374 ---------------AKNLVVS------GPPQSLYGLNLTLRKA---KAPSGLDQSRIPF 409
Query: 1027 SGRVVYFTSMF-PYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVWLDAATQVFY 1085
S R + F++ F P + P H + LL P D +
Sbjct: 410 SERKLKFSNRFLP-----------VASP------FH--SH----LLVPAS--DLINKDLV 444
Query: 1086 SFGLAF-GSLIAFGSYNQPNNNCVR-----------DVIMVSICN--ALTAIYAS-VVVF 1130
++F I Y+ + + +R D I+ T A+ ++ F
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 1131 ---AILGFKAMSNA-AEGTGLAFIAAEGT 1155
G +++ +GTG+ I A GT
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVA-GT 532
Score = 60.1 bits (145), Expect = 8e-09
Identities = 86/573 (15%), Positives = 160/573 (27%), Gaps = 194/573 (33%)
Query: 48 VDAAP-KHLIIVDGAIMQPIPEH----PKRDYIFC--LSTAFGDAYLFQAPCQVELENWV 100
+DA + L + G++ EH P + L F + L + ++
Sbjct: 1 MDAYSTRPLTLSHGSL-----EHVLLVPTASFFIASQLQEQF-NKILPEPTEGFAADDEP 54
Query: 101 NSIHSACAA--AFARHR---GKTG-TLHLLQEEIFRLEKAIDSDNKLKHMADLQMSVLAE 154
+ + K G +L + E N + H L +L E
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HA--LAAKLLQE 111
Query: 155 PETKQQINEQITQWEENLERLHCEQFRLRCYMASLQNGELPNPK----SLLTHVSR-NTK 209
+T +++ ++ Y+ + + P K +L V N +
Sbjct: 112 NDTTLVKTKEL----------------IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 210 CIL------NNLGVF--------TVSSFHAFICARSPSLLNNLLAGRGATKRRPPLLSRS 255
+ N F T + S L+ L+ T + ++
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR---TTLDAEKVFTQ- 211
Query: 256 NSGSSRRS-LQSASSRDEPDK----SVKVSLPEN---QYAHVYLKDSMTVEEFLANACSR 307
G + L++ S+ PDK S+ +S P Q AH Y+
Sbjct: 212 --GLNILEWLENPSNT--PDKDYLLSIPISCPLIGVIQLAH-YV-----------VTAKL 255
Query: 308 KNLNPMEHFVRVKKRREMEDHNYFVPPRG------DLI--------ETYLSTHEVVEVCA 353
P E + +G L+ +++ S V
Sbjct: 256 LGFTPGELRSYL---------------KGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 354 KILYQ--VELQRTTLDHMWGFSVEAELTENAE------------RQDELCCYVSRV---- 395
+L+ V + S+ + EN E Q+++ YV++
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 396 -EDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEP----- 449
K V + L+ G + +V++G S L L + +R ++
Sbjct: 361 PAGKQVEI--SLVNGAKNLVVSGPPQS----------LY---GLNLTLRKAKAPSGLDQS 405
Query: 450 ----------------PETA---GSGMLSATDDMIESLVCPP---PPSD---P------- 477
P + ++ A+D + + LV D P
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 478 -------PMISEEMICDLIVPAP-SWSKEHNIS 502
ISE I D I+ P W
Sbjct: 466 SDLRVLSGSISER-IVDCIIRLPVKWETTTQFK 497
Score = 55.4 bits (133), Expect = 2e-07
Identities = 75/439 (17%), Positives = 132/439 (30%), Gaps = 145/439 (33%)
Query: 543 ETYE--IENLIKSAGEV-TGFCRSPVETHRTSPTGSMANQSSLNPSRQLTDAEK------ 593
+TY + +LIK + E + R+ ++ + G LN L +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-------LNILEWLENPSNTPDKDY 230
Query: 594 LSKVIIELIETERTYVKNLNGL--LENYLEPLKKETFLSGAEINALFGNILEIVAFQRQF 651
L + I L G+ L +Y+ K + E+ +
Sbjct: 231 LLSIPISC---------PLIGVIQLAHYVVTAKL-LGFTPGELRSYLKGATGHS------ 274
Query: 652 LQNLVEAL-----ENEADFHHFDQSSQFKNILFSIGSAFLYYVNHFKLYSSFCASHSKAQ 706
Q LV A+ ++ F F + +LF IG + Y + S +
Sbjct: 275 -QGLVTAVAIAETDSWESF--FVSVRKAITVLFFIGVRCY------EAYPNTSLPPSILE 325
Query: 707 KVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLLQQLCNLTDPHCDE 766
L NEG + LS N Q+ ++ Y+ N P +
Sbjct: 326 DSLENNEGVPSPM--LSISNLTQEQ---VQDYV---------------NKTNSHLPA-GK 364
Query: 767 HLHLVGVVCLI----SFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYG 822
+ + L+ + +V +G + L+ GL L L + A
Sbjct: 365 QVEIS----LVNGAKNLVV-----SGPPQS---LY-------GLNL-TLRKAKA-----P 399
Query: 823 HEKFTNDIYEMTGYKPGWYWQITWRFL-----------GPAIMSCIL--VSSIICRF--- 866
+ I + K + + RFL PA I + F
Sbjct: 400 SGLDQSRI-PFSERKL----KFSNRFLPVASPFHSHLLVPAS-DLINKDLVKNNVSFNAK 453
Query: 867 -LKKPSYSAWN----RAF---LIPFMVMLILEGIPLF-----------LIELGIGQKMRL 907
++ P Y ++ R + +V I+ P+ +++ G G L
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL-PVKWETTTQFKATHILDFGPGGASGL 512
Query: 908 GSLGVWNTIHPWLG-GVGI 925
G L T G GV +
Sbjct: 513 GVL----THRNKDGTGVRV 527
Score = 52.7 bits (126), Expect = 1e-06
Identities = 44/293 (15%), Positives = 88/293 (30%), Gaps = 94/293 (32%)
Query: 1330 IRYQVLVPVTEVQVRASSAKDMDSHFLW-------------------ELI-----HLRSQ 1365
+ + +LVP T AS ++ F EL+ ++ S
Sbjct: 16 LEHVLLVP-TASFFIASQLQE---QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 1366 IQRRTEKVY--VLSNSTAEFRNAFLKT--IRQIIRESVRNMSIPMTKPGVATQIVSNTLG 1421
++ + VL+ EF N +L+ I + + ++ + K +++ N +
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK---TKELIKNYIT 128
Query: 1422 RHSSTGKSAQEQSMNKSSLNPGCSQTLEKSKKPPRPPQRHSSGSIE-YEQQAIIGQPQQG 1480
+ ++S S+L G+ + AI G QG
Sbjct: 129 ARIMAKRPFDKKS--NSAL-------FRAV----------GEGNAQLV---AIFGG--QG 164
Query: 1481 TQPSYVQEPQSTHSTFRGRNKP--------LNESQVSQDEGDKEVKHDCD-------PGT 1525
Y +E + + T+ L+E + + +K + P
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 1526 KSEGEEDSITGAVK----------------KTLGRTPNHL--TLSTTSTLSAG 1560
++ ++ + K LG TP L L + S G
Sbjct: 225 TP-DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Score = 51.6 bits (123), Expect = 3e-06
Identities = 69/461 (14%), Positives = 134/461 (29%), Gaps = 170/461 (36%)
Query: 1232 EMQRIHEEYGAIFDHLFRQH----QKSCKQPIDLSPGDLLYYGG---VEWLNI------S 1278
E++ +++ Y + L + + + +D ++ G +EWL
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK---VFTQGLNILEWLENPSNTPDK 228
Query: 1279 DFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEVEIIRYQVLVPV 1338
D+L L + LIGV +++ Y V +
Sbjct: 229 DYL--------LSI-------PISC----------PLIGV--------IQLAHYVVTAKL 255
Query: 1339 TEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYV-----LSNSTAEFRNAFLKTIR- 1392
+ ++ S+ H ++ + ++S F + K I
Sbjct: 256 LGF-----TPGELRSYLKGATGH--------SQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 1393 --QI-IR--ESVRNMSIPMTKPGVATQIVSNTLGRHSS----TGKSAQE-----QSMNKS 1438
I +R E+ N S+P P + + N G S + + ++ N
Sbjct: 303 LFFIGVRCYEAYPNTSLP---PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 1439 ---------SL-N----------P----GCSQTLEKSKKPPRPPQRHSSGSIEYEQQAII 1474
SL N P G + TL K+K P Q I + ++ +
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR----IPFSERKLK 415
Query: 1475 GQPQQGTQPSYVQEPQST--HSTFRGRNKPLNES---QVSQDEGDKE-----------VK 1518
+ ++ P ++ HS L +++D V
Sbjct: 416 FSNR------FL--PVASPFHS-------HLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 1519 HDCDPGTKSEGEEDSITGAVKKTLGRTPNHLTLSTTSTLSAGSTGSQAKLIQSSQHPVNY 1578
D G+ SI+ + + R P +T + H +++
Sbjct: 461 DTFD-GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT---------------HILDF 504
Query: 1579 QPPIVKDLGSPVWKPRDFG------EASTLPRKNKASYDEI 1613
P LG + +D G A TL + D+
Sbjct: 505 GPGGASGLGVLTHRNKD-GTGVRVIVAGTL---DINPDDDY 541
Score = 50.0 bits (119), Expect = 7e-06
Identities = 96/647 (14%), Positives = 174/647 (26%), Gaps = 243/647 (37%)
Query: 264 LQSASSRDEP----DKSVKVSL--PENQYAHVY-LKDSMTVEEFLANACSRKNLNPMEHF 316
+ + S+R P S++ L P + L++ +F P E F
Sbjct: 1 MDAYSTR--PLTLSHGSLEHVLLVPTASFFIASQLQE-----QFNKILPE-----PTEGF 48
Query: 317 VRVKKRREMEDHNYFVPPRG--DLIETYLS--THEV--------VEVCAKILYQVELQRT 364
+D P +L+ +L + V +V L E +
Sbjct: 49 -------AADD-----EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL--TEFENC 94
Query: 365 TLD----HMWGFSVEAELTENAE-----RQDELCCY------VSRVEDKSV--AMHNGLI 407
L+ H ++ A+L + + ++ + Y R DK A+ +
Sbjct: 95 YLEGNDIH----ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 408 KGD-EIMVI---NGAIVSDLDMMYLESVLQEELSLCMMMRS-SRTEPPETAGSGMLSATD 462
+G+ +++ I G Y E EL R +T ++ +
Sbjct: 151 EGNAQLVAIFGGQGNTDD-----YFE-----EL------RDLYQTYHVLVGD--LIKFSA 192
Query: 463 DMIESLVCPPPPSDPPMISEEMICDLIVPAPSWSKEHNISEQPPEK------VKMPG--- 513
+ + L+ + ++ +++ W N S P + + P
Sbjct: 193 ETLSELI-RTTLDAEKVFTQ--GLNIL----EWL--ENPSNTPDKDYLLSIPISCPLIGV 243
Query: 514 ---SLYNRDLLMSNNNNSSTINNNNVNSNNKGETYEIENL-----IKSAGEVTGF----- 560
+ Y + S KG T + L I F
Sbjct: 244 IQLAHYVVTA------KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 561 ----------CRSPVETHRTSPTGSMANQSSLNPSRQLTDAEKLSKVIIELIETERTY-- 608
R + P +SL PS L D+ +E E +
Sbjct: 298 KAITVLFFIGVRC----YEAYP------NTSLPPS-ILEDS-------LENNEGVPSPML 339
Query: 609 -VKNLN-GLLENYLE------PLKKETFLSGAEINALFGNILEIVAFQRQF--------L 652
+ NL +++Y+ P K+ +S +N + L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNG-----------AKNLVVSGPPQSL 386
Query: 653 QNLVEALENEADFHHFDQSSQFKNILFS-----IGSAFL-----YYVNHFKLYS------ 696
L L DQS I FS + FL + H L
Sbjct: 387 YGLNLTLRKAKAPSGLDQS----RIPFSERKLKFSNRFLPVASPF---HSHLLVPASDLI 439
Query: 697 ---------SFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRIL 747
SF A + V +G + R S E + + I+
Sbjct: 440 NKDLVKNNVSFNAKDIQIP-VYDTFDG----------SDLRVLSGSISER-I---VDCII 484
Query: 748 KYPLLLQQLCNLTDPHCDEHLHLV----GVVCLISFLVGLIFTTGAG 790
+ P+ + H++ G + L G G
Sbjct: 485 RLPVKWETTTQFK------ATHILDFGPGGASGLGVLTHRN-KDGTG 524
Score = 48.5 bits (115), Expect = 2e-05
Identities = 92/559 (16%), Positives = 163/559 (29%), Gaps = 221/559 (39%)
Query: 948 YLFN----SFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIESPGSPKW 1003
YL + ++ L +++ T++ EL Y R P + S
Sbjct: 95 YLEGNDIHALAAKLL-----QENDTTLVKTKELI--KNYITARIMAK-RPFDKKSNSA-- 144
Query: 1004 WIVLCLLL-------AWIIVFFIVMKGIQSSGRVVYFT------SMFPYIVLTIFFIRGI 1050
L A ++ F G Q + YF + +V +
Sbjct: 145 ------LFRAVGEGNAQLVAIF----GGQGNTDD-YFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 1051 TLPGAGAGLVHMYTPKVEKL----LDPNVWLDAATQ---------VFYSFGLAFGSLIAF 1097
TL + L+ T EK+ L+ WL+ + + S L +I
Sbjct: 194 TL----SELIRT-TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG--VIQL 246
Query: 1098 GSYN--------QPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTGLAF 1149
Y P + S T +V A
Sbjct: 247 AHYVVTAKLLGFTPGE-------LRSYLKGATGHSQGLV------------TA-----VA 282
Query: 1150 IAAEGTGLAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFK 1209
IA + +F V + + + F+ +G+ E T I +
Sbjct: 283 IAETDSWESFFVSVRKAITV---LFF----------IGVRCY----EAYPNTSLPPSILE 325
Query: 1210 RIRK-------PILTEALKGM--EKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPID 1260
+ P+L ++ + E+V +++N+ H + KQ ++
Sbjct: 326 DSLENNEGVPSPML--SISNLTQEQVQDYVNK---------------TNSHLPAGKQ-VE 367
Query: 1261 LS-------------PGDLLYYGGVEWLNISDFLGKIK--KGLELHAMCFVFKSAVVFLC 1305
+S P L YG LN++ L K K GL+ +S + F
Sbjct: 368 ISLVNGAKNLVVSGPPQSL--YG----LNLT--LRKAKAPSGLD--------QSRIPF-- 409
Query: 1306 KERLRQKKKLIGVSNKGCSNEVEIIRYQVLVPVTE-------VQVRASSAKDM-DSHFLW 1357
++K R+ +PV V KD+ ++ +
Sbjct: 410 ----SERKLKFSN------------RF---LPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 1358 ELIHLRSQIQRRTEKVY---------VLSNSTAEFRNAFLKTIRQIIRESVRNMSIPMTK 1408
++ I VY VLS S +E + + IIR V+ + K
Sbjct: 451 NAKDIQ--IP-----VYDTFDGSDLRVLSGSISE------RIVDCIIRLPVKWETTTQFK 497
Query: 1409 PGVATQIVSNTLGRHSSTG 1427
AT I+ G ++G
Sbjct: 498 ---ATHIL--DFGPGGASG 511
Score = 38.9 bits (90), Expect = 0.016
Identities = 58/342 (16%), Positives = 107/342 (31%), Gaps = 122/342 (35%)
Query: 356 LYQV-ELQRTTLD----HMW---GFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLI 407
LY+ + + + H GFS+ + N ++ +H G
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP---------------VNLTIHFGGE 1679
Query: 408 KGDEI------MVINGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEPPETAGSGMLSAT 461
KG I M+ + L + + E + + G+LSAT
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF------RSEK----GLLSAT 1729
Query: 462 DDMIESLVCPPPPSDPPM--ISEEMICDLIVPAPSWSKEHNISEQPPEKVKMPG-SLYNR 518
+ + P + + + DL K + P G SL
Sbjct: 1730 ----QF-------TQPALTLMEKAAFEDL--------KSKGLI---PADATFAGHSL--- 1764
Query: 519 DLLMSNNNNSSTINNNNVNSNNKGETY----------EIENLIKSA---GEVTGFCRSPV 565
GE Y IE+L++ G P
Sbjct: 1765 -----------------------GE-YAALASLADVMSIESLVEVVFYRGMTMQVA-VPR 1799
Query: 566 ETHRTSPTGSMANQSSLNPSR-QLTDAEKLSKVIIELIETERTYVKNLNGLLE--NYLEP 622
+ S G +A +NP R + +++ + ++E + +RT L+E NY
Sbjct: 1800 DELGRSNYGMIA----INPGRVAASFSQEALQYVVERVG-KRT-----GWLVEIVNYNVE 1849
Query: 623 LKKETFLSGAEINAL--FGNILEIVAFQRQFLQNLVEALENE 662
++ +G ++ AL N+L + Q+ + L ++L E
Sbjct: 1850 -NQQYVAAG-DLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Score = 33.1 bits (75), Expect = 1.0
Identities = 47/324 (14%), Positives = 82/324 (25%), Gaps = 135/324 (41%)
Query: 1049 GITLPGAGAGLVHMY-TPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNC 1107
G G G L Y T K + +VW + A F +G I N P N
Sbjct: 1625 GSQEQGMGMDL---YKTSKAAQ----DVW-NRADNHFKD---TYGFSILDIVINNPVNLT 1673
Query: 1108 V----------RDVIMVSIC-NALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTG 1156
+ R+ I + + +F + + T F + +G
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS-------TSYTFRSEKGL- 1725
Query: 1157 LAFIVFTQAIVELPGAPFWSIIFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKPIL 1216
L+ FTQ P A + L+ F+ ++
Sbjct: 1726 LSATQFTQ-----P-A--------LTLMEKA-------------------AFEDLKS--- 1749
Query: 1217 TEALKGMEK----VAEH---INEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYY 1269
KG+ A H EY A L
Sbjct: 1750 ----KGLIPADATFAGHSLG---------EYAA-----------------------LASL 1773
Query: 1270 GGVEWLNISDFL------GKI--------KKGLELHAMCFVFKSAVV---------FLCK 1306
V ++I + G + G + M + V ++ +
Sbjct: 1774 ADV--MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 1307 ERLRQKKKLIGVSNKGCSNEVEII 1330
++ L+ + N N+ +
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVA 1855
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 63.6 bits (155), Expect = 4e-12
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
L K L ++ WK +V L L YP + D P + + G
Sbjct: 5 MLHYKAGTSYLGKEH-WKTCFVVLSNGILYQYPDRT------DVIPLLSVNMGGEQCGGC 57
Query: 67 P--EHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACA 108
R + F + + A + E+ W+ + A +
Sbjct: 58 RRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 101
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 63.1 bits (154), Expect = 6e-12
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGA-IMQP 65
+L++K WK WV L + FY S D +PK +I + G+ + P
Sbjct: 10 YLVKKGSVF-----NTWKPMWVVLLEDGIEFYKKKS------DNSPKGMIPLKGSTLTSP 58
Query: 66 IPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+ KR ++F ++T + FQA E + WV I+ A
Sbjct: 59 CQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 63.8 bits (155), Expect = 9e-12
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGA---IM 63
+L +++ W+ W L T +Y D D K +DG +
Sbjct: 22 YLEKRRKDHSFLGFE-WQKRWCALSKTVFYYYGSDK------DKQQKGEFAIDGYDVRMN 74
Query: 64 QPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107
+ + K+D F + Y F A + E WV +
Sbjct: 75 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 118
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 64.6 bits (157), Expect = 2e-11
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL +R WK W L+ + L+++ DS + K + V A + I
Sbjct: 63 WLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDS------EEKLKGTVEVRSA--KEI 114
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAA 109
++ ++ + A + A + W + + ++
Sbjct: 115 IDNTNKENGIDIIMA-DRTFHLIAESPEDASQWFSVLSQVHSS 156
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 60.1 bits (146), Expect = 7e-11
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL ++ + W W L L +Y + + + I + + +
Sbjct: 16 WLFKQASS----GVKQWNKRWFVLVDRCLFYYKDEK------EESILGSIPLLSFRVAAV 65
Query: 67 P--EHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
++ R + F A Y F A E E W+ ++ A
Sbjct: 66 QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 59.4 bits (144), Expect = 1e-10
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL ++ + W W L L +Y + + + I + + +
Sbjct: 27 WLFKQASS----GVKQWNKRWFVLVDRCLFYYKDEK------EESILGSIPLLSFRVAAV 76
Query: 67 P--EHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
++ R + F A Y F A E E W+ ++ A
Sbjct: 77 QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 2e-10
Identities = 91/558 (16%), Positives = 174/558 (31%), Gaps = 137/558 (24%)
Query: 30 LKGTTLLFYPCDSREGRSVDAAPKHLIIVD-GAIMQPI------PEHPKRDYIFCLSTAF 82
+ GT LF+ S++ V + ++ ++ +M PI P R YI +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 83 GDAYLF---------------QAPCQVELENWVNSIH-------SACAAAFARHRGKTGT 120
D +F QA ++ V I + A
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCL---SYKV 176
Query: 121 LHLLQEEIF--RLEKAIDSDNKLKHMADLQMSV----LAEPETKQQINEQITQWEENLER 174
+ +IF L+ + L+ + L + + + I +I + L R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 175 LHCEQFRLRCYMASL------QNGELPNP-----KSLLTHVSRNTKCILNNLGVFTVSSF 223
L + + Y L QN + N K LLT +R K + + L T +
Sbjct: 237 L----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRF-KQVTDFLSAATTT-- 287
Query: 224 HAFICARSPSL----LNNLLAGRGATKRRPPLLSRSNSGSSRR--SLQSASSRDEPDKSV 277
H + S +L + +LL RP L R ++ R S+ + S RD
Sbjct: 288 HISLDHHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW- 344
Query: 278 KVSLPENQYAHV-YLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREM-----EDHNYF 331
+ + HV K + +E L L P E+ +K + +
Sbjct: 345 ------DNWKHVNCDKLTTIIESSL------NVLEPAEY----RKMFDRLSVFPPSAH-- 386
Query: 332 VPPRGDLIETYLSTHEVVEVCAKILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCY 391
+P L+ + + ++ +L + +L + EL
Sbjct: 387 IPT--ILLSL-IWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIP---SIYLELKVK 438
Query: 392 VSRVEDKSVAMHNGLIKGDEIMV---INGAIVSDLDM------MY-LESVLQEE------ 435
+ + A+H ++ I + I LD + L+++ E
Sbjct: 439 L----ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 436 ---LSLCMMMRSSR-TEPPETAGSGMLSATDDMI--ESLVCPPPPSDPPMISEEMICDLI 489
L + + R A +L+ + + +C +DP E ++ ++
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC---DNDP--KYERLVNAIL 549
Query: 490 --VPAPSWSKEHNISEQP 505
+P E N+
Sbjct: 550 DFLPKI----EENLICSK 563
Score = 54.1 bits (129), Expect = 4e-07
Identities = 87/563 (15%), Positives = 160/563 (28%), Gaps = 176/563 (31%)
Query: 281 LPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREMEDHNYFVPPRGDLIE 340
L + A V D V++ + S++ + +H + K L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEI---DHIIMSKDA---VSGTLR------LFW 69
Query: 341 TYLSTHEVVEVCAKILYQ-VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKS 399
T LS E +++ + VE L + F + TE + Y+ + +
Sbjct: 70 TLLSKQE------EMVQKFVE---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--- 117
Query: 400 VAMHNG---LIKGDEIMVINGAIVSDLDMMY-LESVLQE-----ELSLCMMMRSSRTEPP 450
++N K + VS L L L E + + +
Sbjct: 118 -RLYNDNQVFAKYN---------VSRLQPYLKLRQALLELRPAKNVLIDGV--------- 158
Query: 451 ETAGSG----MLSATDDMIESLVCPPP----------PSDPPMISEEM--ICDLIVPAPS 494
GSG L + C + P + E + + I P +
Sbjct: 159 --LGSGKTWVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--N 212
Query: 495 WSKEHNISEQPPEKVKMPGSLYN--RDLLMSNNNNSSTINNNNVNSNNKGETYEIENLIK 552
W+ + S ++ S+ R LL S + + NV + + +
Sbjct: 213 WTSRSDHSSNIKLRIH---SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---- 265
Query: 553 SAGEVTGFCRSPVETHRTSPTGSMANQSSLNPSRQLTDAEKLSKVI-IELIETERTYVK- 610
C+ + T R +Q+TD + I L T
Sbjct: 266 --------CKILLTT-R---------------FKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 611 NLNGLLENYL----EPLKKETFLSGAEIN----ALFGNILEIVAFQRQFLQNL------- 655
+ LL YL + L +E N ++ + +++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREV----LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 656 -----VEALENEADFHHFDQSSQFK---NI---LFSIGSAFLYY----------VNHFKL 694
+ LE FD+ S F +I L S+ +++ VN
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL----IWFDVIKSDVMVVVNKLHK 413
Query: 695 YSSFCASHSKAQKV-LHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLLL 753
YS K + + + L+ + N H S ++ Y +
Sbjct: 414 YS-LVEKQPKESTISIP----SIYLELKVKLENEYALHRSIVDHY-----NIPKTFDSD- 462
Query: 754 QQLCNLTDPHCD----EHL--HL 770
+L P+ D H+ HL
Sbjct: 463 ----DLIPPYLDQYFYSHIGHHL 481
Score = 42.1 bits (98), Expect = 0.002
Identities = 41/331 (12%), Positives = 88/331 (26%), Gaps = 90/331 (27%)
Query: 1259 IDLSPGDLLY-YGGVEWLNISDFLGKIKKGLE----LHAMCFVFKSAVV---FLCKERLR 1310
+D G+ Y Y + +S F + + + + K+ +
Sbjct: 7 MDFETGEHQYQYKDI----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 1311 QKKKLIGVSNKGCSNEVEIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRT 1370
+L S + E+ Q V ++ FL I +
Sbjct: 63 GTLRLFWTL---LSKQEEM--VQKFV---------EEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 1371 EKVYV-----LSNSTAEFRNAFLKTIRQI--IRESVRNMSIP--------MT---KPGVA 1412
++Y+ L N F + ++ +R+++ + P + K VA
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVA 167
Query: 1413 TQIVSN--------------TLGR-HSSTGKSAQEQSMNKSSLNPGCSQTLEKSKKPPRP 1457
+ + L +S Q + ++P + + S
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLR 226
Query: 1458 PQRHSSGSIEYEQQAIIGQPQQGTQPSY---------VQEPQSTHSTFRG--------RN 1500
SI+ E + ++ Y VQ + + F R
Sbjct: 227 IH-----SIQAELRRLLKSKP------YENCLLVLLNVQNAK-AWNAFNLSCKILLTTRF 274
Query: 1501 KPLNESQVSQDEGDKEVKHDCDPGTKSEGEE 1531
K + + + + H T E +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Score = 36.0 bits (82), Expect = 0.12
Identities = 45/281 (16%), Positives = 81/281 (28%), Gaps = 60/281 (21%)
Query: 1202 IFDIEIFK--RIRKPILTEALKG-----MEKVAEHINEMQRIHEEYGAIFDHLFRQHQKS 1254
+F + K + + + E L+ M + + + Y D L+ +Q
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 1255 CKQPIDLSPGDLLYYGGVEWLNISDFLGKIK--KGLELHAMCFVFKSAVVF-LCKERLRQ 1311
K + +L + L +++ K + + + K+ V +C Q
Sbjct: 127 AKYNVSRLQ---------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 1312 KKKLIGVS--NKGCSNEVEII-------RYQVLVPVTE-------VQVRASSAKDMDSHF 1355
K + N N E + YQ+ T +++R S +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 1356 LWELIHLRSQIQRRTEKVYVLSN-STAEFRNAF------LKTIRQIIRESVRNMSIPMTK 1408
L + + VL N A+ NAF L T R V + T
Sbjct: 238 LKSKPYENCLL--------VLLNVQNAKAWNAFNLSCKILLTTRFK---QVTDFLSAATT 286
Query: 1409 PGVATQIVSNTLGRHSSTGKSAQEQSMNKSSL-------NP 1442
++ S TL + L NP
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Score = 32.5 bits (73), Expect = 1.7
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 1179 FFMMLLSLG--------LGSQIGILEGVLCTIFDIEIFKR-IRK--PILTEALKGMEK-- 1225
F M+ L + +L T+ ++ +K I P + +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 1226 --------VAEHINEMQR-IHEEYGAIFDHLFRQHQK 1253
+++ + ++ + E AIF+ +Q Q+
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 58.2 bits (141), Expect = 2e-10
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L +K W+ W + +Y + PK ++ G ++
Sbjct: 8 YLEKKSKDHSFFGSE-WQKRWCVVSRGLFYYYANEK------SKQPKGTFLIKGYSVRMA 60
Query: 67 PE---HPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
P K++ F L++ Y F A E +WV+ I
Sbjct: 61 PHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 103
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 59.0 bits (143), Expect = 2e-10
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL ++ + WK W L L +Y + + I++ + +
Sbjct: 26 WLYKQDST----GMKLWKKRWFVLSDLCLFYYRDEK------EEGILGSILLPSFQIALL 75
Query: 67 P--EHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+H R Y F + Y F E+E W+ ++ A
Sbjct: 76 TSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDA 117
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 58.3 bits (141), Expect = 3e-10
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L + WK W ++ L FY D + + + + G + P
Sbjct: 13 YLNVLVN-------SQWKSRWCSVRDNHLHFYQ-DRNRSKV----AQQPLSLVGCEVVPD 60
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAA 110
P P Y F + + +A E+ +W+ + S +
Sbjct: 61 PS-PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGSG 103
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 60.1 bits (145), Expect = 5e-10
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L +++ W+ W L T +Y D D K +DG ++
Sbjct: 111 YLEKRRKDHSFLGFE-WQKRWCALSKTVFYYYGSDK------DKQQKGEFAIDGYDVRMN 163
Query: 67 P---EHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+ K+D F + Y F A + E WV +
Sbjct: 164 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 206
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 57.4 bits (138), Expect = 2e-09
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 19/135 (14%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAI-MQP 65
+LL K+ R ++ YW L+GTTL FY + + +
Sbjct: 23 FLLIKRS-----GYREYEHYWTELRGTTLFFYTDKK------SIIYVDKLDIVDLTCLTE 71
Query: 66 IPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHRGKTGTLHLLQ 125
K F L + + E W I + + ++ + LL
Sbjct: 72 QNSTEKNCAKFTLVLPKEE-VQLKTENTESGEEWRGFILTVTELSVPQN------VSLLP 124
Query: 126 EEIFRLEKAIDSDNK 140
++ +L + ++ + K
Sbjct: 125 GQVIKLHEVLEREKK 139
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 55.1 bits (133), Expect = 4e-09
Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAI-MQP 65
++++K H+ + W W LK + +Y + K I++D ++
Sbjct: 13 YMMKKGHRR-----KNWTERWFVLKPNIISYYVSED------LKDKKGDILLDENCCVES 61
Query: 66 IPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+P+ + +F + + A + + + W+ +IHS
Sbjct: 62 LPDKDGKKCLFLVKCF-DKTFEISASDKKKKQEWIQAIHST 101
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 53.9 bits (130), Expect = 6e-09
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 9 LRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPE 68
L K GW+ WV LK L +Y + + I + A+ I
Sbjct: 7 LSKWTN----YIHGWQDRWVVLKNNALSYYKSEDETEY----GCRGSICLSKAV---ITP 55
Query: 69 HPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
H + F +S + +A + W+++I
Sbjct: 56 HDFDECRFDISVN-DSVWYLRAQDPDHRQQWIDAIEQH 92
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 54.3 bits (131), Expect = 8e-09
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL +++ + W+ + L+ L +Y + D P+ + + G ++ I
Sbjct: 13 WLKKQRS-----IVKNWQQRYFVLRAQQLYYYKDEE------DTKPQGCMYLPGCTIKEI 61
Query: 67 PEHP--KRDYIFCLSTAFGDA-------YLFQAPCQVELENWVNSIHSACAA 109
+P ++F + A D Y+ A Q E+E WV + +
Sbjct: 62 ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS 113
Score = 30.5 bits (69), Expect = 1.6
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 1336 VPVTEVQVRASSAKDMDSH-FLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAFLKTIRQI 1394
+ + ++ + ++ F++E+I R + YVL S+ ++K +R++
Sbjct: 51 MYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRV 110
Query: 1395 IRES 1398
Sbjct: 111 AGSG 114
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 54.4 bits (131), Expect = 9e-09
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL ++ R WK W L G L +Y + + +++ ++P
Sbjct: 16 WLHKQDSS----GLRLWKRRWFVLSGHCLFYYKDSR------EESVLGSVLLPSYNIRPD 65
Query: 67 P--EHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
R + F Y+ A +L W+ ++ A
Sbjct: 66 GPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 107
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 53.6 bits (129), Expect = 2e-08
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 15/112 (13%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAI---M 63
+ +++ + WK + L T+ ++ + + P +I +
Sbjct: 19 YCVKQGA-----VMKNWKRRYFQLDENTIGYFKSEL------EKEPLRVIPLKEVHKVQE 67
Query: 64 QPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHR 115
+ RD +F + T + QA E+ +W+ ++ A A R
Sbjct: 68 CKQSDIMMRDNLFEIVTT-SRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGR 118
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 52.8 bits (127), Expect = 3e-08
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L ++ + WK W L L ++ P ++ +
Sbjct: 23 YLTKQGG-----LVKTWKTRWFTLHRNELKYFKDQM------SPEPIRILDLTECSAVQF 71
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHRGKTGTL 121
+R FCL + A VE + W+ + + + GT+
Sbjct: 72 DYSQERVNCFCLVFP-FRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTI 125
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 51.8 bits (124), Expect = 7e-08
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTL-LFYPCDSREGRSVDAAPKHLIIVDGAIMQP 65
+L ++ H+ + WK L+ L Y S+E + P + G+++
Sbjct: 23 YLAKQGHKR-----KNWKVRRFVLRKDPAFLHYYDPSKE----ENRPVGGFSLRGSLVSA 73
Query: 66 IPEHP--------KRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAA 109
+ ++ + +F + T Y QA + E W+ +I +
Sbjct: 74 LEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSG 125
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 51.0 bits (122), Expect = 9e-08
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFY---PCDSREGRSVDAAPKHLIIVDGAIM 63
WLLR+ + + WK W L L Y V + I G
Sbjct: 10 WLLRQSTIL-----KRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQEC 64
Query: 64 QPI--PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+ P+ +D + + G A + W ++ +
Sbjct: 65 RDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 51.3 bits (123), Expect = 1e-07
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L + + + RGWK W Y + + DA P I + A+
Sbjct: 13 YLSKFGGKGPI---RGWKSRWFFYDERKCQLYYSRTAQ----DANPLDSIDLSSAVF--D 63
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+ + IF + T +A + + W+ +
Sbjct: 64 CKADAEEGIFEIKTP-SRVITLKAATKQAMLYWLQQLQMK 102
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 51.9 bits (124), Expect = 1e-07
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 7 WLLRKKHQIELARK-RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQP 65
WL + ++ R +K + L Y + + + PK I +D M
Sbjct: 23 WLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDS-CMGV 81
Query: 66 IPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107
+ + R + F L +YL A +VE+E W+ ++
Sbjct: 82 VQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKIL 123
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 50.7 bits (121), Expect = 1e-07
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 10/108 (9%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIM--- 63
+L + + WK + L + + S R A P+ L+ +DG +
Sbjct: 13 YLWAIGKNV----WKRWKKRFFVLVQVSQYTFAMCS--YREKKAEPQELLQLDGYTVDYT 66
Query: 64 QPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAF 111
P P F GD +F + + + WV +++ A +
Sbjct: 67 DPQPGLEGGRAFFNAVKE-GDTVIFASDDEQDRILWVQAMYRATGQSH 113
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 50.3 bits (120), Expect = 2e-07
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 6/104 (5%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGA-IMQP 65
WL ++ I + W+ + LK + + AP + V +M+
Sbjct: 13 WLHKRGEYI-----KTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKT 67
Query: 66 IPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAA 109
P I CL F E E W +I +
Sbjct: 68 ERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADG 111
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 49.5 bits (118), Expect = 4e-07
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L++ + + GW+ + L L + + R + P+ + + GA++ P
Sbjct: 13 YLMKYTNLV-----TGWQYRFFVLNNEAGLLEYFVNEQSR--NQKPRGTLQLAGAVISPS 65
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
E F ++ A G+ Y +A E ++WV+ +
Sbjct: 66 DEDSHT---FTVNAASGEQYKLRATDAKERQHWVSRLQIC 102
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 49.1 bits (117), Expect = 5e-07
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 15/107 (14%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+LL+K I ++ W+ +K L S + P L ++ +
Sbjct: 15 YLLKKSDGI----RKVWQRRKCSVKNGILTISHATS------NRQPAKLNLLTCQVK--- 61
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFAR 113
+ + F L + Y FQA + + W++ + ++ A
Sbjct: 62 -PNAEDKKSFDLISH-NRTYHFQAEDEQDYVAWISVLTNSKEEALTM 106
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 49.4 bits (118), Expect = 6e-07
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTT-LLFYPCDSREGRSVDAAPKHLIIVDGAIMQP 65
LL++ H+ + WK L+ L Y + P I + G ++
Sbjct: 23 CLLKQGHRR-----KNWKVRKFILREDPAYLHYYDPAG-----AEDPLGAIHLRGCVVTS 72
Query: 66 IPEHP-----KRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107
+ + + + +F + TA Y QA E W+ +I A
Sbjct: 73 VESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 119
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 48.5 bits (116), Expect = 6e-07
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 16/106 (15%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKG-TTLLFYPCDSREGRSVDAAPKHLIIVDGAIM-- 63
LL++ H+ + WK L+ L Y + P I + G ++
Sbjct: 12 CLLKQGHRR-----KNWKVRKFILREDPAYLHYYDPAG-----AEDPLGAIHLRGCVVTS 61
Query: 64 ---QPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
+ + +F + TA Y QA E W+ +I A
Sbjct: 62 VESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 48.9 bits (116), Expect = 7e-07
Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 22/117 (18%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L R+ + + + L L + R+ D P + + +
Sbjct: 11 FLERRSK-----FLKSYSKGYYVLTPNFLHEFKTADRKK---DLVPVMSLALSECTVTEH 62
Query: 67 --------PEHPKRDYIFCLSTAF------GDAYLFQAPCQVELENWVNSIHSACAA 109
P D F L G ++F+A + +W +++ +
Sbjct: 63 SRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTST 119
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 48.8 bits (116), Expect = 8e-07
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 10/109 (9%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFY---PCDSREGRSVDAAPKHLIIVDGAIM 63
WL R+ + R WK W L L Y E V I G
Sbjct: 13 WLWRQSSIL-----RRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQEC 67
Query: 64 QPI--PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAA 110
Q + PE RD + ++ G A + + W ++ A +
Sbjct: 68 QDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTP 116
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 47.5 bits (113), Expect = 1e-06
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 12/100 (12%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
L + + + GW+ W L L +Y + K I + ++
Sbjct: 4 VLYKWTNYL-----TGWQPRWFVLDNGILSYYDSQDDVCKG----SKGSIKMAVCEIKVH 54
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
R L + +A E + W+ ++ S+
Sbjct: 55 SADNTR---MELIIPGEQHFYMKAVNAAERQRWLVALGSS 91
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 48.6 bits (115), Expect = 2e-06
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 10/106 (9%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
L+++ Q + +K L + L +Y + + K I V I
Sbjct: 20 ILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEK-----KYRKGFIDVSKIKCVEI 74
Query: 67 PEHPKRDYIFCLSTAFG-----DAYLFQAPCQVELENWVNSIHSAC 107
++ F + AP + WV +
Sbjct: 75 VKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEI 120
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 47.3 bits (112), Expect = 3e-06
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLK--GTTLLFYPCDSREGRSVDAAPK---HLIIVDGA 61
+L + ++ + + L LL+Y D+ + +V A L +
Sbjct: 20 FLDIEDNE----NSGKFLRRYFILDTQANCLLWYM-DNPQNLAVGAGAVGSLQLTYISKV 74
Query: 62 IMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107
+ + PK + F ++ Y QA Q +L++WV +++ A
Sbjct: 75 SIATPKQKPKTPFCFVINAL-SQRYFLQANDQKDLKDWVEALNQAS 119
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 46.5 bits (110), Expect = 4e-06
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 18/106 (16%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGT---TLLFYPCDSREGRSVDAAPKHLIIVDGAIM 63
L + W W + + L G S D I + +
Sbjct: 13 PLRLSE------SGETWSEVWAAIPMSDPQVLHLQ------GGSQDGRLPRTIPLPSCKL 60
Query: 64 QPI--PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107
E +++ L A ++ A + W+ ++ +A
Sbjct: 61 SVPDPEERLDSGHVWKLQWA-KQSWYLSASSAELQQQWLETLSTAA 105
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 45.8 bits (109), Expect = 4e-06
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVI 415
L++V L + + +GFSV A+ E YV + GL D ++ +
Sbjct: 7 LHKVTLYKDSGMEDFGFSV-------ADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQV 59
Query: 416 NGAIVSDLD 424
N D D
Sbjct: 60 NHVRTRDFD 68
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 46.6 bits (110), Expect = 5e-06
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 17/110 (15%)
Query: 5 KKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQ 64
K WL I K G K YW L L +Y D + K+++ VD ++
Sbjct: 15 KGWLTINNIGI---MKGGSKEYWFVLTAENLSWYKDDEEKE------KKYMLSVDNLKLR 65
Query: 65 PIPEHP-KRDYIFCLSTAFG-------DAYLFQAPCQVELENWVNSIHSA 106
+ + +IF L Q E+++W S A
Sbjct: 66 DVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 45.9 bits (109), Expect = 6e-06
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WL + Q KR ++ WV G ++ +Y + + K +I +
Sbjct: 13 WLDKLSPQG----KRMFQKRWVKFDGLSISYYNNEK------EMYSKGIIPLSAISTV-- 60
Query: 67 PEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHR 115
+ D F + T ++F+ + E +W++ + +A + +
Sbjct: 61 --RVQGDNKFEVVTT-QRTFVFRVEKEEERNDWISILLNALKSQSLTSQ 106
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 46.2 bits (109), Expect = 8e-06
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCL-- 78
+G++ +WV K TTL +Y S++ P + + G + P + + L
Sbjct: 26 KGYRQHWVVFKETTLSYY--KSQD--EAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLV 81
Query: 79 -STAFGDAYLFQAPCQVELENWVNSIHSACAA 109
S + + + W+ A
Sbjct: 82 PSPEGMSEIYLRCQDEQQYARWMAGCRLASKG 113
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 44.0 bits (104), Expect = 1e-05
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 370 WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLE 429
+GF++ + D +V+ VE S A + L DEI+ IN S D E
Sbjct: 19 FGFTI---------KWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWE 69
Query: 430 SVL---QEELSLCMMMR 443
+ QE L M +R
Sbjct: 70 EAMAKAQETGHLVMDVR 86
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 44.7 bits (106), Expect = 2e-05
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 18 ARKRGWKGYWVCLKGTT-LLFY---PCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRD 73
A + WK W L T L Y D+ +D A + + P+
Sbjct: 19 AFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTI-GAPKTVDEK 77
Query: 74 YIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAA 109
F + T Y F A + WV+ I S ++
Sbjct: 78 AFFDVKTT-RRVYNFCAQDVPSAQQWVDRIQSCLSS 112
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 45.0 bits (106), Expect = 2e-05
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 33/121 (27%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
WLL+ R + WK W L L ++ + D P+ +I ++ ++ +
Sbjct: 10 WLLKLGG-----RVKTWKRRWFILTDNCLYYF------EYTTDKEPRGIIPLENLSIREV 58
Query: 67 PEHPKRDYIFCLST---------------------AFGDAYLFQAPCQVELENWVNSIHS 105
+ P++ F L Y AP E E W+ SI +
Sbjct: 59 LD-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 117
Query: 106 A 106
+
Sbjct: 118 S 118
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 43.5 bits (103), Expect = 2e-05
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAE-RQDELCCYVSRVEDKSVAMHNGLIKGDEIMVING 417
+ L++ + +GF ++ + E ++ E+ +V+RV + S A GL GD I +NG
Sbjct: 8 LTLEKGD-NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNG 66
Query: 418 AIVSDLD 424
V +
Sbjct: 67 LNVEGIR 73
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 48.1 bits (114), Expect = 3e-05
Identities = 47/305 (15%), Positives = 88/305 (28%), Gaps = 43/305 (14%)
Query: 767 HLHLVGVVCLISFLVGLIF----TTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYG 822
HL L ++L IF G L +VL+ + + + G
Sbjct: 355 HLQLAIFWIATAWLGMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIGQWLGVNG 414
Query: 823 HEKFTNDIYEMTGYK---PGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAF 879
+ + G++ G WQI +G + I+ + ++
Sbjct: 415 YLGNEWFLLGHQGWEYIELGRIWQI-ILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLL 473
Query: 880 LIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGV--GISSCLVTFFVALY 937
+ + F+ W IH W+ G+ + ++ F +
Sbjct: 474 FYSAIAVPFFYIFAFFIQPDTNFTMADFWR---WWIIHLWVEGIFEVFAVVVIGFLLVQL 530
Query: 938 YNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIES 997
V L+ F+ L H+ Y++
Sbjct: 531 RLVTKKSTVRALYFQFTILLGSGVIGIGHH--------------YYY------------- 563
Query: 998 PGSPKWWIVLCL---LLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG 1054
GSP+ WI L L I + ++++ + + + FPY F I
Sbjct: 564 NGSPEVWIALGAVFSALEVIPLTLLILEAYEQYKMMRDGGANFPYKATFWFLISTAIWNL 623
Query: 1055 AGAGL 1059
GAG+
Sbjct: 624 VGAGV 628
Score = 30.0 bits (67), Expect = 8.7
Identities = 22/210 (10%), Positives = 54/210 (25%), Gaps = 39/210 (18%)
Query: 980 TAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPY 1039
+F + L++ ++ FIV +G++ +
Sbjct: 418 NEWFLLGHQG------WEYIELGRIWQIILVVGMLLWLFIVFRGVKRGLK----RESDKG 467
Query: 1040 IVLTIFFIRGITLP---GAGAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIA 1096
++ + F I +P + + W V F + +I
Sbjct: 468 GLIHLLFYSAIAVPFFYIFAFFIQPDTNFTMADFWR---WWIIHLWVEGIFEVFAVVVIG 524
Query: 1097 FGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILGFKAMSNAAEGTG--LAFIAAEG 1154
F +++ + ++ + + + G G + +
Sbjct: 525 F-------------LLVQLRLVTKKSTVRALYFQFTI---LLGSGVIGIGHHYYYNGSPE 568
Query: 1155 TGLA-FIVFTQAIVELPGAPFWSIIFFMML 1183
+A VF+ V P +I
Sbjct: 569 VWIALGAVFSALEV----IPLTLLILEAYE 594
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 44.4 bits (104), Expect = 3e-05
Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 24/123 (19%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+LL++ + + WK +V L L Y + + + + ++
Sbjct: 9 FLLKRSGN---SLNKEWKKKYVTLSSNGFLLY--HPSINDYIHSTHGKEMDLLRTTVKVP 63
Query: 67 PEHP-------------------KRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSAC 107
+ P + ++ F + ++ G + F+A E + WV +I S
Sbjct: 64 GKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQI 123
Query: 108 AAA 110
A+
Sbjct: 124 LAS 126
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 44.1 bits (103), Expect = 4e-05
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 19/116 (16%)
Query: 4 VKKWLLRKKHQIELARKRG----WKGYWVCLKGTT------LLFYPCDSREGRSVDAAPK 53
++ LR + A G W+ + L+ L F+ + PK
Sbjct: 19 QREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPK------ASRPK 72
Query: 54 HLI---IVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 106
I + E P++D F L G Y+ + ++ +WV I
Sbjct: 73 VSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGC 128
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 43.9 bits (103), Expect = 5e-05
Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 29/123 (23%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPI 66
+L + +++ W W L G + ++ E R P I + + I
Sbjct: 10 FLTIFE---DVSGFGAWHRRWCVLSGNCISYWTYPDDEKRK---NPIGRINLANCTSRQI 63
Query: 67 PEHPK----RDYIFCLSTAFGDA-------------------YLFQAPCQVELENWVNSI 103
+ R F L T A + E + W+ +
Sbjct: 64 EPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKL 123
Query: 104 HSA 106
+
Sbjct: 124 NQV 126
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 42.3 bits (100), Expect = 7e-05
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVIN 416
+ V++ + TL +GF + + L V V A H L GD+I+ +N
Sbjct: 10 HTVKIDKDTLLQDYGFHIS----------ESLPLTVVAVTAGGSA-HGKLFPGDQILQMN 58
Query: 417 GAIVSDLD 424
DL
Sbjct: 59 NEPAEDLS 66
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 42.4 bits (100), Expect = 8e-05
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 370 WGFSVEAELTENAERQD-ELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD 424
+GFS+ A + + V VED S A GL GD I ING V L
Sbjct: 15 YGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLV 70
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 45.4 bits (106), Expect = 1e-04
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 20 KRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLS 79
W + +G L+ + +D + + +R Y F ++
Sbjct: 294 SSTWDRQFYFTQGGNLMSQARGDVA-------GGLAMDIDNCSVMAVDCEDRR-YCFQIT 345
Query: 80 TAFGD-AYLFQAPCQVELENWVNSIHSACAAAF 111
+ G + + QA + + E W+ +I++ +
Sbjct: 346 SFDGKKSSILQAESKKDHEEWICTINNISKQIY 378
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 43.8 bits (103), Expect = 1e-04
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVI 415
L +V L R G SV + ++S + A GL GDEI+ I
Sbjct: 85 LKEVRLDRLH-PEGLGLSV------RGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRI 137
Query: 416 NGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEPPETAGSGMLSATDDMIESLVCP 471
NG +S + ++++ E ++ + +R P +++ L T ++ V
Sbjct: 138 NGYSISSCTHEEVINLIRTEKTVSIKVRHIGLIPVKSSPDEPL--TWQYVDQFVSE 191
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 41.7 bits (98), Expect = 1e-04
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+V L++ G ++ E+ ++ + A +G + GD + I
Sbjct: 11 REVHLEKRR-GEGLGVAL----VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI 65
Query: 416 NGAIVSDLDMMYLESVLQE 434
NG + L + ++ ++E
Sbjct: 66 NGTSLVGLPLAACQAAVRE 84
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 40.7 bits (96), Expect = 2e-04
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVIN 416
Y V L WGF L + L +SR+ S A + L +GD ++ I+
Sbjct: 3 YSVTLTG---PGPWGFR----LQGGKDFNMPL--TISRITPGSKAAQSQLSQGDLVVAID 53
Query: 417 GAIVSDL 423
G +
Sbjct: 54 GVNTDTM 60
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 41.2 bits (97), Expect = 2e-04
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 355 ILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMV 414
I++ V ++++ GFSV +E + +VS+VE+ S A GL GD+I
Sbjct: 10 IIHSVRVEKSP-AGRLGFSV----RGGSEHGLGI--FVSKVEEGSSAERAGLCVGDKITE 62
Query: 415 INGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEPPETA 453
+NG + M VL L MM+R P +
Sbjct: 63 VNGLSLESTTMGSAVKVLTSSSRLHMMVR-RMGSGPSSG 100
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 41.1 bits (97), Expect = 2e-04
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVIN 416
+ V L+ + WGF L + L +SRV S A L GD I IN
Sbjct: 10 HSVTLRGPS---PWGFR----LVGGRDFSAPL--TISRVHAGSKAALAALCPGDLIQAIN 60
Query: 417 GAIVSDL 423
G +
Sbjct: 61 GESTELM 67
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 41.2 bits (97), Expect = 2e-04
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 370 WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDL 423
WGF L+ + L ++R+ S A L GD I+ I+G +
Sbjct: 17 WGFR----LSGGIDFNQPL--VITRITPGSKAAAANLCPGDVILAIDGFGTESM 64
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQD-ELCCYVSRVEDKSVAMHNGLIKGDEIMVING 417
V +++ + +GF +++ +N E+ + ++++ S A GL GD + ING
Sbjct: 19 VTVEKQD-NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANING 77
Query: 418 AIVSDLD 424
Sbjct: 78 VSTEGFT 84
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
V +++ + +GF + A ++ + +E S A GL D ++ +NG
Sbjct: 9 VVIKKG--SNGYGFYLRAG-------PEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGK 59
Query: 419 IVSDLD 424
V LD
Sbjct: 60 SVEALD 65
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 40.8 bits (96), Expect = 3e-04
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 358 QVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVING 417
V L+R GFS+ + + YVS VE S+A GL GD+I+ +N
Sbjct: 11 LVSLRRAKAHEGLGFSI------RGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVND 64
Query: 418 AIVSDLDMMYLESVLQEELSLCMMMRSSRTEPPETAG 454
++ + L+ L + + S+ ++G
Sbjct: 65 KSLARVTHAEAVKALKGSKKLVLSVYSAGRISGPSSG 101
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 41.0 bits (96), Expect = 4e-04
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESV--LQEELSLCMMMRSSRTE 448
Y++ V+ S A +GL GD+I+ +NG S L++++ E+V L+ L + ++
Sbjct: 49 YITGVDPGSEAEGSGLKVGDQILEVNG--RSFLNILHDEAVRLLKSSRHLILTVKDVGRL 106
Query: 449 PPETAGSGMLSATDDMIESLVCPPPPS 475
P T D + + PS
Sbjct: 107 PHA-------RTTVDETKWIASSSGPS 126
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 40.6 bits (95), Expect = 4e-04
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQD------ELCCYVSRVEDKSVAMHNGLIKGD 410
V LQ+ +GF + + + Y+ V++ VA GL GD
Sbjct: 9 KTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 67
Query: 411 EIMVINGAIVSDLD 424
++ +NG V +
Sbjct: 68 FLIEVNGQNVVKVG 81
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 40.0 bits (94), Expect = 4e-04
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 370 WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDL 423
WGF L + + L +SRV S A L GD I I+G S++
Sbjct: 15 WGFR----LVGGKDFEQPL--AISRVTPGSKAALANLCIGDVITAIDGENTSNM 62
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 40.5 bits (95), Expect = 5e-04
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVIN 416
+ +L + +GF + E + + +E+ S A GL+ GD ++ IN
Sbjct: 15 RECKLSKQE-GQNYGFFLRIEKDTDG-------HLIRVIEEGSPAEKAGLLDGDRVLRIN 66
Query: 417 GAIVSDLD 424
G V +
Sbjct: 67 GVFVDKEE 74
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 40.0 bits (94), Expect = 5e-04
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMV 414
+ QV L + G + R DE ++ + + +A +G + D ++
Sbjct: 4 ILQVALHKRDSGEQLGIKL-------VRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLA 56
Query: 415 INGAIVSDLD 424
ING +
Sbjct: 57 INGHDLKYGT 66
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 40.1 bits (94), Expect = 6e-04
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVIN 416
+ +L + +GF + E + + +E+ S A GL+ GD ++ IN
Sbjct: 3 RESKLSKQE-GQNYGFFLRIEKDTDG-------HLIRVIEEGSPAEKAGLLDGDRVLRIN 54
Query: 417 GAIVSDLD 424
G V +
Sbjct: 55 GVFVDKEE 62
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 39.6 bits (93), Expect = 6e-04
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 370 WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDL 423
WGF +T + + V++V ++ A L GD I+ ING +
Sbjct: 14 WGFR----ITGGRDFHTPI--MVTKVAERGKAKDADLRPGDIIVAINGESAEGM 61
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 40.0 bits (94), Expect = 6e-04
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 357 YQVELQRTT--LDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMV 414
+ + R T L G S+ + D+ ++SRV ++ A G+ GD+++
Sbjct: 17 LTLTILRQTGGL----GISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLE 72
Query: 415 INGAIVSDLD 424
+NG + +
Sbjct: 73 VNGVALQGAE 82
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 39.2 bits (92), Expect = 6e-04
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVIN 416
Y V L WGF L + L +S ++D A + GD ++ I+
Sbjct: 5 YSVSLVGPA---PWGFR----LQGGKDFNMPL--TISSLKDGGKAAQANVRIGDVVLSID 55
Query: 417 GAIVSDL 423
G +
Sbjct: 56 GINAQGM 62
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 40.6 bits (95), Expect = 7e-04
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 344 STHEVVEVCAKILYQVELQRTTLDHMWGFSV---EAELTENAERQDELCCYVSRVEDKSV 400
S+ V++ + +V L + + GF + + + ++SR+ +
Sbjct: 18 SSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGL 77
Query: 401 AMHNGLIK-GDEIMVINGAIVSDLD 424
A GL+ DE++ +NG VS
Sbjct: 78 AQSTGLLAVNDEVLEVNGIEVSGKS 102
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 43.0 bits (100), Expect = 7e-04
Identities = 25/195 (12%), Positives = 66/195 (33%), Gaps = 9/195 (4%)
Query: 260 SRRSLQSASSRDEPDKSVKVSLPENQYAHV-YLKDSMTVEEFLANACSRKNLNPMEHFVR 318
+RR + ++S+D + + + QY + ++ +S + + ++ E
Sbjct: 110 ARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRA 169
Query: 319 VKKRREMEDHNYFVPPRGDLIETYLSTHEVVEVCAKILYQVELQRTTLDHMWGFSVEAEL 378
E + + + + L+ G + +
Sbjct: 170 NGINPEDLSQKEYSD-------IINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVV 222
Query: 379 TENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDLDMMYLESVLQEELS 437
E+ ++ + + A +G + GD+IM ING + L + + +++ +
Sbjct: 223 VESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKN 282
Query: 438 LCMMMRSSRTEPPET 452
+ + + PP T
Sbjct: 283 QTQVKLNIVSCPPVT 297
Score = 29.9 bits (66), Expect = 8.4
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 389 CCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDL 423
+ + +A G+ G I+ ING V
Sbjct: 316 NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVAT 350
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 39.2 bits (92), Expect = 8e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 370 WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDL 423
WGF L + L +SR+ A G+ GD ++ I+G L
Sbjct: 15 WGFR----LQGGKDFNVPL--SISRLTPGGKAAQAGVAVGDWVLSIDGENAGSL 62
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 39.2 bits (92), Expect = 8e-04
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
V +Q+ H +GF+V D + V V AM G+ +GD I+ +NG
Sbjct: 12 VIIQKD--QHGFGFTV---------SGDRIV-LVQSVRPGGAAMKAGVKEGDRIIKVNGT 59
Query: 419 IVSDLD 424
+V++
Sbjct: 60 MVTNSS 65
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 39.7 bits (93), Expect = 8e-04
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
L + +GFS++ Q + Y++ + + VAM G++ D ++ +NG
Sbjct: 12 CYLVKE--GGSYGFSLKTV-------QGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGE 62
Query: 419 IVSDL 423
V D
Sbjct: 63 NVEDA 67
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 39.2 bits (92), Expect = 9e-04
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
L++ + +GF + E + +L Y+ VE S A GL+ GD ++ +NG
Sbjct: 7 CCLEKG--PNGYGFHLHGE-------KGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGE 57
Query: 419 IVSDLD 424
V
Sbjct: 58 NVEKET 63
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 40.4 bits (94), Expect = 9e-04
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 358 QVELQRTTLDHMW--GFSV------EAELTENAERQDELCCYVSRVEDKSVAMHNGLIKG 409
+VE+ + GFS+ + +E + + YV+RV + A GL G
Sbjct: 26 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIG 85
Query: 410 DEIMVINGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEPPETAGSGMLSATD 462
D+IM +NG ++ + L + + + +R + MLS T+
Sbjct: 86 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLSETE 138
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 39.3 bits (92), Expect = 9e-04
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVIN 416
V L WGF L + L +S ++D A + GD ++ I+
Sbjct: 7 GSVSLVG---PAPWGFR----LQGGKDFNMPL--TISSLKDGGKASQAHVRIGDVVLSID 57
Query: 417 GAIVSDLDMMYLESV-----LQEELSLCMMMRSSRTEPPETAGSG 456
G M +LE+ L++ + R+S E SG
Sbjct: 58 GISAQ--GMTHLEAQNKIKACTGSLNM-TLQRASAAAKSEPVSSG 99
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 38.7 bits (91), Expect = 0.001
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVI 415
+ VE+ R +GF++ + C +S V S A GL GD+I+ +
Sbjct: 3 VRSVEVARG--RAGYGFTL----------SGQAPCVLSCVMRGSPADFVGLRAGDQILAV 50
Query: 416 NGAIVSDLD 424
N V
Sbjct: 51 NEINVKKAS 59
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 39.6 bits (92), Expect = 0.001
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQD------ELCCYVSRVEDKSVAMHNGLIKGD 410
V LQ+ +GF + + + Y+ V++ VA GL GD
Sbjct: 29 KTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 87
Query: 411 EIMVINGAIVSDLD 424
++ +NG V +
Sbjct: 88 FLIEVNGQNVVKVG 101
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 38.9 bits (91), Expect = 0.001
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
+ L++ +GF + E + ++ V+ A G+ GD ++ + G
Sbjct: 7 LHLEKG--PQGFGFLLREEKGLD----GRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGE 60
Query: 419 IVSDLD 424
V L
Sbjct: 61 SVEGLG 66
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 38.9 bits (91), Expect = 0.001
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
V +++ + +GF + A ++ + +E S A GL D ++ +NG
Sbjct: 10 VVIKKG--SNGYGFYLRAG-------PEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGK 60
Query: 419 IVSDLD 424
V LD
Sbjct: 61 SVEALD 66
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 39.4 bits (92), Expect = 0.001
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
VE+ +T + G S+ +++ + R++ SV +G + GD I+ I
Sbjct: 17 LMVEIVKTPGSAL-GISLTT-----TSLRNKSVITIDRIKPASVVDRSGALHPGDHILSI 70
Query: 416 NGAIVSDLDMMYLESVLQEELSLCMM--MRSSRTEPPETAGSGMLSA 460
+G + ++ +L + + +++ P SG S
Sbjct: 71 DGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPSSG 117
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 38.4 bits (90), Expect = 0.001
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 370 WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDL 423
WGF ++ + + V++V ++ A L GD I+ ING ++
Sbjct: 18 WGFR----ISGGRDFHTPI--IVTKVTERGKAEAADLRPGDIIVAINGQSAENM 65
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 39.5 bits (92), Expect = 0.001
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 14/125 (11%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
V L + + + GF V ER + +S + A +GLI+ GD I+ +
Sbjct: 10 ISVRLFKRKVGGL-GFLV-------KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAV 61
Query: 416 NGAIVSDLDMMYLESVLQE---ELSLCMMMR--SSRTEPPETAGSGMLSATDDMIESLVC 470
N + DL VL+ E + +++R T ET +G + + +
Sbjct: 62 NDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQPLG 121
Query: 471 PPPPS 475
PP +
Sbjct: 122 PPTKA 126
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVIN 416
+ + R G S+ + D+ ++SRV ++ A G+ GD+++ +N
Sbjct: 5 LTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62
Query: 417 G 417
G
Sbjct: 63 G 63
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 37.7 bits (88), Expect = 0.003
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
L++ +GF++ ++ + Y+ V+ S A +GL D ++ +NG
Sbjct: 8 CHLRKG--PQGYGFNLHSD-------KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQ 58
Query: 419 IVSDLD 424
V L
Sbjct: 59 NVEGLR 64
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 37.7 bits (88), Expect = 0.003
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 355 ILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIM 413
+++ V L +T +G + +++ ++ + S A G +K GD I+
Sbjct: 5 LIHMVTLDKTG-KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRIL 63
Query: 414 VINGAIVSDL 423
+NG V +
Sbjct: 64 SLNGKDVRNS 73
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 39.6 bits (92), Expect = 0.003
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 20/73 (27%)
Query: 441 MMRSSRTEPPETAGSGMLSATDDMIESLVCPPPPSDPPMISE-----EMICD---LIVPA 492
MM +R + AG ++ L CP PP I E +++C L++
Sbjct: 1 MM--TRESIDKRAGR----RGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL-- 52
Query: 493 PSWSKEHNISEQP 505
+ + +
Sbjct: 53 ----SDKLVDTRS 61
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 37.7 bits (88), Expect = 0.003
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQD------ELCCYVSRVEDKSVAMHNGLIKGDEI 412
V + ++ + +GF+V +++E + + +VS V A G+ KGD I
Sbjct: 10 VRIVKS--ESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRI 67
Query: 413 MVING 417
+ +NG
Sbjct: 68 LEVNG 72
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 37.8 bits (88), Expect = 0.003
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD 424
V V+ A GL + D ++ +N V
Sbjct: 38 VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK 72
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 38.6 bits (89), Expect = 0.004
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 21/119 (17%)
Query: 4 VKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFY---------------PCDSREGRSV 48
V L+ + + + W W LK LL Y C+ E S
Sbjct: 9 VMADWLKIRGTL-----KSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSK 63
Query: 49 DAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAY-LFQAPCQVELENWVNSIHSA 106
+ + PK + + ++ +Y + +A + + W++++ A
Sbjct: 64 KDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELA 122
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 37.3 bits (87), Expect = 0.004
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDL 423
++S+V S A GL +GD+++ +N D+
Sbjct: 44 FISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDI 76
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Length = 185
Score = 39.3 bits (91), Expect = 0.004
Identities = 32/194 (16%), Positives = 70/194 (36%), Gaps = 37/194 (19%)
Query: 1216 LTEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQP--------IDLSPGDLL 1267
L ++L ++ V ++ +E+ + + + KS + DL L+
Sbjct: 13 LAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLV 72
Query: 1268 YYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLIGVSNKGCSNEV 1327
G V N + + E+ + +VFL ++ QK + K
Sbjct: 73 RDGSVFLKNAA------GRLKEVQ--AVLLTDILVFLQEK--DQKYIFASLDQK------ 116
Query: 1328 EIIRYQVLVPVTEVQVRASSAKDMDSHFLWELIHLRSQIQRRTEKVYVLSNSTAEFRNAF 1387
++ + ++ VR A + F LI + ++ + S+ E RN++
Sbjct: 117 -----STVISLKKLIVR-EVAHEEKGLF---LISMG----MTDPEMVEVHASSKEERNSW 163
Query: 1388 LKTIRQIIRESVRN 1401
++ I+ I R+
Sbjct: 164 IQIIQDTINTLNRD 177
Score = 30.4 bits (68), Expect = 3.2
Identities = 8/72 (11%), Positives = 23/72 (31%)
Query: 35 LLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQV 94
+ D + + +I + I++ + K ++ + + A +
Sbjct: 99 VFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEKGLFLISMGMTDPEMVEVHASSKE 158
Query: 95 ELENWVNSIHSA 106
E +W+ I
Sbjct: 159 ERNSWIQIIQDT 170
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 37.9 bits (88), Expect = 0.005
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMV 414
L +V+L R G +V + +D++ Y+S ++ S+A +G I+ GD I+
Sbjct: 20 LEEVDLYRMNSQDKLGLTV----CYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQ 75
Query: 415 ING 417
ING
Sbjct: 76 ING 78
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 36.5 bits (85), Expect = 0.005
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
+ + + + H GF + ++ + S A NGL+ I ING
Sbjct: 8 ITMHKDSTGH-VGFIFKN-------------GKITSIVKDSSAARNGLLTEHNICEINGQ 53
Query: 419 IVSDL 423
V L
Sbjct: 54 NVIGL 58
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 36.9 bits (86), Expect = 0.006
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVA-MHNGLIKGDEIMV 414
V+LQ WGF+ L E + L VS++ED A + + GDE++
Sbjct: 12 YVPVQLQGGA---PWGFT----LKGGLEHCEPL--TVSKIEDGGKAALSQKMRTGDELVN 62
Query: 415 INGAIVSDLDMMYLESV 431
ING L E++
Sbjct: 63 INGT---PLYGSRQEAL 76
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 39.8 bits (93), Expect = 0.006
Identities = 36/335 (10%), Positives = 87/335 (25%), Gaps = 57/335 (17%)
Query: 842 WQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLI--EL 899
Q+T S ++ + P+++ + + ++ IL IP+ L E+
Sbjct: 11 KQLTLLGFFAITASMVMA------VYEYPTFATSGFSLVFFLLLGGILWFIPVGLCAAEM 64
Query: 900 GIGQKMRLGSLGVW--NTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSL 957
G + W NT+ P G F + + +
Sbjct: 65 ATVDGWEEGGVFAWVSNTLGPRWG----------FAAISFG--YLQIAIGF--------- 103
Query: 958 PWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIESPGSPKWWIVLCLLLAWIIVF 1017
YF + P + L++ W +
Sbjct: 104 --------------------IPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALAL 143
Query: 1018 FIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHMYTPKVEKLLDPNVW- 1076
G + + R+ ++ I + V + D +
Sbjct: 144 TQ-FGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVG 202
Query: 1077 -LDAATQVFYSF-GLAFGSLIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILG 1134
L S+ G+ + + P + ++++ + + + + ++
Sbjct: 203 TLVVFVAFILSYMGVEASATHV-NEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIP 261
Query: 1135 FKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVEL 1169
+ N + G F I +T ++
Sbjct: 262 GNEI-NLSAGVMQTFTVLMSHVAPEIEWTVRVISA 295
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 36.6 bits (85), Expect = 0.006
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 358 QVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVING 417
Q+ + R +GF++ + V V+ A GL + D ++ +N
Sbjct: 6 QITIPRGKDG--FGFTI----------CCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNE 53
Query: 418 AIVSDLD 424
V
Sbjct: 54 RPVEHWK 60
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 37.1 bits (86), Expect = 0.007
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEPP 450
++S V+ S++ GL GD+I+ +NG S+LD +VL+ SL + + ++
Sbjct: 44 FISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGREL 103
Query: 451 E 451
Sbjct: 104 F 104
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 38.6 bits (90), Expect = 0.008
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
++ L+R GFS+ A T+N D+ +++++ A +G ++ D I+ +
Sbjct: 7 EEITLERGNSG--LGFSI-AGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 63
Query: 416 NGAIVSDLDMMYLESVLQE 434
N V ++ L+E
Sbjct: 64 NEVDVREVTHSAAVEALKE 82
Score = 35.5 bits (82), Expect = 0.074
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 371 GFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
GFS+ N + YV+++ + A +G ++ GD+I+ +N + D+
Sbjct: 114 GFSIAGG-VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDV 166
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 37.0 bits (86), Expect = 0.009
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 357 YQVELQRTTLDHMWGFSVEA-ELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMV 414
V + R + +GF + + + + + R+ D S A +K GD I+
Sbjct: 12 SDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70
Query: 415 INGAIVSDL 423
+NG + ++
Sbjct: 71 VNGQSIINM 79
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 36.2 bits (84), Expect = 0.010
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
+++ +GF++ ++ + + ++ V+ S A +GL D I+ +NG
Sbjct: 13 CTMKKG--PSGYGFNLHSD-------KSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGV 63
Query: 419 IVSDLD 424
+
Sbjct: 64 CMEGKQ 69
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 36.7 bits (85), Expect = 0.012
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVING 417
YVS+V S+A GL GD+++ NG
Sbjct: 45 YVSKVTVGSIAHQAGLEYGDQLLEFNG 71
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 35.7 bits (83), Expect = 0.012
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
L + ++ +GF + A + ++ V+ A GL D I+ +NG
Sbjct: 7 CRLAKG--ENGYGFHLNAI-------RGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGV 57
Query: 419 IVSDL 423
V D
Sbjct: 58 NVLDE 62
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 36.5 bits (84), Expect = 0.013
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 16/98 (16%)
Query: 19 RKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIM------QPIPEHPKR 72
+K GW +V + +LFY DS + + + P ++ +D + +
Sbjct: 16 KKFGWVKKYVIVSSKKILFY--DSEQDKE-QSNPYMVLDIDKLFHVRPVTQTDVYRADAK 72
Query: 73 D--YIFCLSTA-----FGDAYLFQAPCQVELENWVNSI 103
+ IF + A L A E + WV+ +
Sbjct: 73 EIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRL 110
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 36.7 bits (85), Expect = 0.013
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 386 DELCCYVSRVEDKSVAMHNGLIKGDEIMVING 417
+++ +V+ V + S A GL +GD+I+ +N
Sbjct: 49 NDVGIFVAGVLEDSPAAKEGLEEGDQILRVNN 80
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 36.3 bits (84), Expect = 0.014
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD----MMYLESVLQEELSL 438
V ++ A G +GD I+ I L M L+S ++E+ +
Sbjct: 46 VQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEM 98
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 36.4 bits (84), Expect = 0.014
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD 424
+V +V++ A GL GD I+ +NG V
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKT 97
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 38.7 bits (89), Expect = 0.014
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEP 449
+V+ V + S A GL +GD+I+ +N D + E + L L +
Sbjct: 25 IFVAGVLEDSPAAKEGLEEGDQILRVNNV---DFTNIIREEAVLFLLDLPKGEEVTILAQ 81
Query: 450 PETAGSGMLSATDDMIESLVCPPPPSDPP 478
+ + +D + +
Sbjct: 82 KKKDVYRRIVESDVGDSFYIRTHFEYEKE 110
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 36.2 bits (84), Expect = 0.016
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 356 LYQVELQR--TTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
L+ VEL++ L G S+ ++L +V V + A +G I+ D +
Sbjct: 5 LFPVELEKDSEGL----GISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 413 MVING 417
+ ++G
Sbjct: 61 VEVDG 65
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 37.8 bits (87), Expect = 0.017
Identities = 24/174 (13%), Positives = 58/174 (33%), Gaps = 23/174 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
+++ +GF++ ++ ++ + ++ V+ S A +GL D I+ +NG
Sbjct: 13 CTMKKG--PSGYGFNLHSDKSKPGQ-------FIRSVDPDSPAEASGLRAQDRIVEVNGV 63
Query: 419 IVSDL-------------DMMYLESVLQEELSLCMMMRSSRTEPPETAGSGMLSATDDMI 465
+ D L V +E R ++ G + T+ I
Sbjct: 64 CMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLN-GPLPVPFTNGEI 122
Query: 466 ESLVCPPPPSDPPMISEEMICDLIVPAPSWSKEHNISEQPPEKVKMPGSLYNRD 519
+ ++ + S + + + ++ P + P S + D
Sbjct: 123 QKENSREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSD 176
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 35.5 bits (82), Expect = 0.017
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 358 QVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVING 417
V ++R L + GFSV+ + + +A G+ G I+ ING
Sbjct: 14 TVLIRRPDLRYQLGFSVQN-------------GIICSLMRGGIAERGGVRVGHRIIEING 60
Query: 418 AIVSDL 423
V
Sbjct: 61 QSVVAT 66
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 35.4 bits (82), Expect = 0.018
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVING 417
++ ++ T + G ++ ++ C V+R+ + G + GDEI+ ING
Sbjct: 16 IQFEKVT-EEPMGICLK--------LNEKQSCTVARILHGGMIHRQGSLHVGDEILEING 66
Query: 418 AIVSDLDMMYLESVLQE 434
V++ + L+ ++E
Sbjct: 67 TNVTNHSVDQLQKAMKE 83
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 37.2 bits (85), Expect = 0.018
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 25/127 (19%)
Query: 7 WLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREG--------------RSVDAAP 52
L++ Q + +K L L +Y D G V+
Sbjct: 8 IFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVV 67
Query: 53 ----------KHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNS 102
+ + M+ I + Y F + G Y+ +P + + W++
Sbjct: 68 PEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYV-FSPTEELRKRWIHQ 126
Query: 103 IHSACAA 109
+ +
Sbjct: 127 LKNVIRY 133
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 95
Score = 35.4 bits (81), Expect = 0.018
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 262 RSLQSASSRDEPDKSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNP 312
S + V+V LP Q V + +TV + L A + L P
Sbjct: 5 HHHHSHMPKSPQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIP 55
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 35.9 bits (83), Expect = 0.019
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMV 414
+ V L + + + GF V ER + +S + A +GLI+ GD I+
Sbjct: 2 VISVRLFKRKVGGL-GFLV-------KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILA 53
Query: 415 INGAIVSDL 423
+N + DL
Sbjct: 54 VNDRPLVDL 62
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 38.3 bits (88), Expect = 0.020
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 371 GFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDLDMMYLE 429
GFS+ A T+N D+ +++++ A +G ++ D I+ +N V ++
Sbjct: 73 GFSI-AGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAV 131
Query: 430 SVLQE 434
L+E
Sbjct: 132 EALKE 136
Score = 35.3 bits (80), Expect = 0.21
Identities = 22/233 (9%), Positives = 63/233 (27%), Gaps = 11/233 (4%)
Query: 269 SRDEPDKSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNPMEHFVRVKKRREMEDH 328
++ ++K + ++ + + + +++ + +
Sbjct: 221 MHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYP 280
Query: 329 NYFVPPRGDLIETYLSTHEVVEVCAKILYQVELQRTTLDHMWGFSVEAELTENAERQDEL 388
P E + ++ + R + GF++ +D
Sbjct: 281 TAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTG--LGFNI-------VGGEDGE 331
Query: 389 CCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDLDMMYLESVLQE-ELSLCMMMRSSR 446
++S + A +G ++ GD+I+ +NG + + L+ ++ ++ +
Sbjct: 332 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 391
Query: 447 TEPPETAGSGMLSATDDMIESLVCPPPPSDPPMISEEMICDLIVPAPSWSKEH 499
E M SL I L +
Sbjct: 392 EEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGF 444
Score = 31.8 bits (71), Expect = 2.1
Identities = 22/168 (13%), Positives = 59/168 (35%), Gaps = 5/168 (2%)
Query: 348 VVEVCAKILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLI 407
V+ +E++ GFS+ + N + YV+++ + A +G +
Sbjct: 145 VMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVG-NQHIPGDNSIYVTKIIEGGAAHKDGRL 203
Query: 408 K-GDEIMVINGAIVSDLDMMYLESVLQ---EELSLCMMMRSSRTEPPETAGSGMLSATDD 463
+ GD+I+ +N + D+ + L+ + + L + S+ A + ++
Sbjct: 204 QIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQ 263
Query: 464 MIESLVCPPPPSDPPMISEEMICDLIVPAPSWSKEHNISEQPPEKVKM 511
+++ + + +P + P E ++
Sbjct: 264 HLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRI 311
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 36.9 bits (85), Expect = 0.021
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 356 LYQVELQRTT--LDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
L+ VEL++ + L G S+ ++L +V V + A +G I+ D +
Sbjct: 81 LFPVELEKDSEGL----GISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 136
Query: 413 MVING 417
+ ++G
Sbjct: 137 VEVDG 141
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 35.5 bits (82), Expect = 0.022
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD----MMYLESVLQEELSL--CMMMR 443
V ++ A G +GD I+ I G L M L+S EE+ + ++
Sbjct: 38 VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLD 97
Query: 444 SSRTEPPETAGSG 456
S+ + ++ S
Sbjct: 98 STSSMHNKSGPSS 110
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 35.4 bits (82), Expect = 0.024
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 356 LYQVELQR--TTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
L+ VEL++ L G S+ ++L +V V + A +G I+ D+I
Sbjct: 10 LFPVELEKDEDGL----GISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 65
Query: 413 MVINGAIVSDL 423
+ ++G + +
Sbjct: 66 VEVDGISLVGV 76
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 35.5 bits (82), Expect = 0.026
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVING 417
V +++ + G +V R + +SR+ A +GL+ GDE++ ING
Sbjct: 29 VRIEKARDIPL-GATV---------RNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEING 78
Query: 418 AIVSDLDMMYLESVLQE 434
+ D+ + +L +
Sbjct: 79 IEIRGKDVNEVFDLLSD 95
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 36.3 bits (84), Expect = 0.030
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDM 425
+V V+ S A GL GD+++ ING +
Sbjct: 30 FVQLVQANSPASLVGLRFGDQVLQINGENCAGWSS 64
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 35.5 bits (82), Expect = 0.030
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 359 VELQRTTLDHMW-----GFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
+++ R + DH G + E E+ Y++++ A G + G ++
Sbjct: 16 IKITRDSKDHTVSGNGLGIRI-VGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQV 74
Query: 413 MVINGAIVSDL 423
+ NG ++
Sbjct: 75 LEWNGIPLTSK 85
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 36.3 bits (84), Expect = 0.037
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 332 VPPRGDLIETYLSTHEVVEVCAKILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCY 391
+ D+ E+ + + V + VEL G + ++ + R+
Sbjct: 92 LEIEFDVAESVIPSSGTFHVKLPKKHSVEL---------GIT----ISSPSSRKPGDPLV 138
Query: 392 VSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
+S ++ SVA G ++ GD+++ I+ +
Sbjct: 139 ISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSC 171
Score = 33.6 bits (77), Expect = 0.28
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 350 EVCAKILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK- 408
+V +V L + +G + E +S +E S A G+++
Sbjct: 1 QVVHTETTEVVLTADPVTG-FGIQL-QGSVFATETLSS-PPLISYIEADSPAERCGVLQI 57
Query: 409 GDEIMVINGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEPPET 452
GD +M ING D +L++ + + E+
Sbjct: 58 GDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAES 101
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin,
seven-transmembrane, light-gated cation membrane
protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Length = 333
Score = 37.2 bits (85), Expect = 0.037
Identities = 21/209 (10%), Positives = 50/209 (23%), Gaps = 14/209 (6%)
Query: 746 ILKYPLLLQQLCNLT-DPHCDEHLHLVGVVCL-ISFLVGLIFTTGAGEYWLKLFDSFAGT 803
++ P Q C + L + I+F + + G K +
Sbjct: 41 VICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSALCLMFYGYQTWKSTCGWEEI 100
Query: 804 IGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSII 863
+ + ++ + IY G K W W P IL+
Sbjct: 101 YVATIEMIKFIIEYFHEFDE---PAVIYSSNGNKTVWLRYAEWLLTCP----VILIHLSN 153
Query: 864 CRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGV 923
L + ++ L + + + G++ + +
Sbjct: 154 LTGLANDYNKRTMGLLVSDIGTIVWGTTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYI 213
Query: 924 G-----ISSCLVTFFVALYYNVIITWCFY 947
+ + ++W +
Sbjct: 214 EAYHTVPKGRCRQVVTGMAWLFFVSWGMF 242
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 34.2 bits (79), Expect = 0.041
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+V L ++ + +G + + + +V + S+A +G I+ GD ++ I
Sbjct: 2 SKVTLVKSRKNEEYGLRLASHI------------FVKEISQDSLAARDGNIQEGDVVLKI 49
Query: 416 NGAIVSDLDMMYLESVLQ 433
NG + + M L
Sbjct: 50 NG---TVTENMSLTDAKT 64
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase;
RAS-binding domain, transferase, riken structural
genomics/proteomics initiative; NMR {Rattus norvegicus}
SCOP: d.15.1.5
Length = 107
Score = 34.7 bits (79), Expect = 0.043
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 263 SLQSASSRDEPDKSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNP 312
S + +++V LP Q V +++ M++ + L A + L P
Sbjct: 7 QQMGRGSSSKTSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQP 56
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 36.4 bits (84), Expect = 0.046
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 37/123 (30%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+ V+L + + G S+ +E+ C ++ + + ++ GD I
Sbjct: 115 FNVDLMKKAGKEL-GLSL---------SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF 164
Query: 416 NGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEPPETAGSGMLSATDDMIESLVCPPPPS 475
NG L+ + + + + + V P P+
Sbjct: 165 NG---DALEGLPFQVCYA-----------------------LFKGANGKVSMEVTRPKPT 198
Query: 476 DPP 478
Sbjct: 199 LRT 201
Score = 30.2 bits (68), Expect = 3.8
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 371 GFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDLDMMYLE 429
G V C ++ V + + +K D I ING + M L+
Sbjct: 32 GVIV----CGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLK 87
Query: 430 S--VLQEELSLCMMMRSSRTEPPE 451
+ + + R +PPE
Sbjct: 88 VHQLFHTTYEKAVTLTVFRADPPE 111
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 34.2 bits (79), Expect = 0.047
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+ V+L + + G S+ +E+ C ++ + + ++ GD I
Sbjct: 10 FNVDLMKKAGKEL-GLSL---------SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF 59
Query: 416 NGAIVSDL 423
NG + L
Sbjct: 60 NGDALEGL 67
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 35.9 bits (82), Expect = 0.054
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 21 RGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYIFCLST 80
+G+K YW K T++ Y + P H + + G + P + + L
Sbjct: 64 KGYKQYWCTFKDTSISCY----KSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLI 119
Query: 81 AFGDA---YLFQAPCQVELENWVNSIHSAC 107
+ + + + +W+ + A
Sbjct: 120 PVAEGMNEIWLRCDNEKQYAHWMAACRLAS 149
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 34.2 bits (79), Expect = 0.054
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMV 414
LY VEL R G S+ + + + + + YV + S A +G I+ D+I+
Sbjct: 13 LYSVELFREKDTSSLGISI-SGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILR 71
Query: 415 INGAIVSDL 423
++ V +
Sbjct: 72 VDDVNVQGM 80
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 36.7 bits (84), Expect = 0.057
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 390 CYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLESVLQEELSLC 439
+V+ V + S A GL +GD+I+ +N D + E + L L
Sbjct: 33 IFVAGVLEDSPAAKEGLEEGDQILRVNNV---DFTNIIREEAVLFLLDLP 79
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 33.9 bits (78), Expect = 0.058
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVING 417
+ L + G +++ + + V+R+ A +GLI GDE+ +NG
Sbjct: 8 IRLVKN--REPLGATIKKD-------EQTGAIIVARIMRGGAADRSGLIHVGDELREVNG 58
Query: 418 AIVSDLDMMYLESVLQE---ELSLCMMMRSSRTEPP 450
V D + +L + ++ ++ S+ E P
Sbjct: 59 IPVEDKRPEEIIQILAQSQGAITF-KIIPGSKEETP 93
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 34.3 bits (79), Expect = 0.059
Identities = 18/146 (12%), Positives = 40/146 (27%), Gaps = 44/146 (30%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+ V+L + + G S+ +E+ C ++ + + ++ GD I
Sbjct: 4 FNVDLMKKAGKEL-GLSL---------SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF 53
Query: 416 NGAIVSDLDMMYLESVLQEELSLCMMMRSSRTEPPETAGSGMLSATDDMIESLVCPPPPS 475
NG L+ + + + + + V P P
Sbjct: 54 NG---DALEGLPFQVCYA-----------------------LFKGANGKVSMEVTRPKPG 87
Query: 476 DPPMISEEMICDLIVPAPSWSKEHNI 501
S VP ++ +
Sbjct: 88 SGGSGSL-------VPRLLRRNQYWV 106
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 34.5 bits (79), Expect = 0.062
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVA--MHNGLIKGDEIMVIN 416
+ ++ + +GF+V+ + VSRV + A L +GD++++IN
Sbjct: 19 IRMKPDE-NGRFGFNVKGGYDQKMP------VIVSRVAPGTPADLCVPRLNEGDQVVLIN 71
Query: 417 GAIVSDL 423
G +++
Sbjct: 72 GRDIAEH 78
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 34.2 bits (79), Expect = 0.065
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 371 GFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVING 417
GFS+ R + +VSR+ + A G ++ GD ++ ING
Sbjct: 21 GFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSING 68
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding
domain (RBD), ubiquitin-like fold, A-RAF kinase,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 86
Score = 33.8 bits (77), Expect = 0.065
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 268 SSRDEPDKSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNP 312
S +VKV LP Q V ++D M+V + L A + LN
Sbjct: 1 GSSGSSGGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQ 45
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 34.3 bits (79), Expect = 0.067
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 356 LYQVELQRTT--LDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
+ +++L + L GFS+ A N + YV+++ D A +G ++ GD +
Sbjct: 25 VVEIKLFKGPKGL----GFSI-AGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRL 79
Query: 413 MVING 417
+++N
Sbjct: 80 LMVNN 84
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 34.5 bits (79), Expect = 0.070
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGA 418
+++ +GF++ ++ + + ++ V+ S A +GL D I+ +NG
Sbjct: 13 CTMKKG--PSGYGFNLHSD-------KSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGV 63
Query: 419 IVSDLD 424
+
Sbjct: 64 CMEGKQ 69
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 36.5 bits (85), Expect = 0.072
Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 39/207 (18%)
Query: 995 IESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG 1054
I +P + + I + + + G ++ GR +F + ++L +F
Sbjct: 116 INAPINT-FNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIF------- 167
Query: 1055 AGAGLVHM--YTPKVEKLLDPNVW---LDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVR 1109
AG +H P L P+ + A+ F S+ + FG I S + N +
Sbjct: 168 AGLITIHPSYVIP----DLAPSAVSGMIFASAIFFLSY-MGFGV-ITNASEHIENPK--K 219
Query: 1110 DV---IMVS--ICNALTAIYASV--VVFAILGFKAMSNAAEGTGLAFIAAE--GTGLAFI 1160
+V I +S I +Y V L + A+E LA A G +
Sbjct: 220 NVPRAIFISILIV---MFVYVGVAISAIGNLPIDELIKASE-NALAVAAKPFLGNLGFLL 275
Query: 1161 VFTQAIVELPGAPFWSI-----IFFMM 1182
+ A+ + A +I + + +
Sbjct: 276 ISIGALFSISSAMNATIYGGANVAYSL 302
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 33.8 bits (78), Expect = 0.076
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+ VEL R +G ++ + + V + A G ++ GD ++ I
Sbjct: 13 FSVELVRG--YAGFGLTLGG----GRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66
Query: 416 NGAIVSDLDMMYLESV 431
NG S + + ++V
Sbjct: 67 NG--ESTQGLTHAQAV 80
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 33.8 bits (78), Expect = 0.077
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
++ L+R + GFS+ A +N D+ +++++ A +G + D ++ +
Sbjct: 6 EEIVLERG--NSGLGFSI-AGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
Query: 416 NG 417
N
Sbjct: 63 NE 64
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics consortium; HET: MSE; 1.99A {Homo sapiens}
Length = 96
Score = 33.8 bits (77), Expect = 0.080
Identities = 12/48 (25%), Positives = 17/48 (35%)
Query: 265 QSASSRDEPDKSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNP 312
V+V LP Q V + +TV + L A + L P
Sbjct: 4 HHHHHSHMQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIP 51
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell membrane,
membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB:
3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Length = 445
Score = 36.2 bits (84), Expect = 0.083
Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 20/186 (10%)
Query: 995 IESPGSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPG 1054
P + C+++ WI V + + G + RV ++ I + + G
Sbjct: 116 FPILKDPWVLTITCVVVLWIFVL-LNIVGPKMITRVQAVATVLALIPIVGIAVFGWF--- 171
Query: 1055 AGAGLVHMYTPKVEKLLDPNVW---LDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDV 1111
Y + + +SF + S + N R+V
Sbjct: 172 --WFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSF-IGVESASVAAGVVK---NPKRNV 224
Query: 1112 ---IMVSICNALTAIY--ASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAI 1166
+ + Y ++ + ++ A+ +A G A A G IV A
Sbjct: 225 PIATIGGVL-IAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAA 283
Query: 1167 VELPGA 1172
G+
Sbjct: 284 AGCLGS 289
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 33.2 bits (76), Expect = 0.089
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVING 417
V +++T +H+ G + R + ++R+ + GL+ GD I +NG
Sbjct: 10 VGIRKTAGEHL-GVTF---------RVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNG 59
Query: 418 AIV 420
V
Sbjct: 60 QPV 62
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 33.9 bits (78), Expect = 0.092
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 356 LYQVELQRTT--LDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
+ +++L + L GFS+ A N + YV+++ + A +G ++ GD++
Sbjct: 4 IMEIKLIKGPKGL----GFSI-AGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 58
Query: 413 MVING 417
+ +N
Sbjct: 59 LAVNS 63
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding
proteins, protein-protein complex, effectors, signaling
protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5
PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Length = 77
Score = 33.0 bits (75), Expect = 0.098
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 277 VKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNP 312
++V LP Q V +++ M++ + L A + L P
Sbjct: 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQP 39
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 35.1 bits (81), Expect = 0.100
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+V L + +GF + + +R ++ V A G IK GD ++ +
Sbjct: 108 VEVTLHKEGNT--FGFVIRGG--AHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163
Query: 416 NGAIVSDL 423
+G +
Sbjct: 164 DGIRLLGT 171
Score = 33.2 bits (76), Expect = 0.41
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
VS + +A + + GD I +NG ++
Sbjct: 36 RVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKF 69
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 33.5 bits (77), Expect = 0.11
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMV 414
+ V L + + G S+ + + + + Y+ + +G I+ GD ++
Sbjct: 6 IITVTLNMEKYNFL-GISIVGQ----SNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQ 60
Query: 415 ING 417
+N
Sbjct: 61 VND 63
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 33.0 bits (76), Expect = 0.13
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 356 LYQVELQRTT--LDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
+ +V L + L GFS+ N + Y++++ + A +G ++ GD +
Sbjct: 4 IMEVNLLKGPKGL----GFSIAGG-IGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58
Query: 413 MVING 417
+ +N
Sbjct: 59 LAVNN 63
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 33.6 bits (77), Expect = 0.13
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 357 YQVELQRTTLDHMWGFSV---EAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
VE+ R + G S+ + + ++ ++ +V + S A +K GD+I
Sbjct: 17 RIVEIFREP-NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKI 75
Query: 413 MVING 417
+ ++G
Sbjct: 76 LEVSG 80
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 33.6 bits (77), Expect = 0.14
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVING 417
V LQ+ ++ G S+ Q C Y+ +V D + A +G + GDEI +NG
Sbjct: 28 VTLQKDA-QNLIGISIGGG------AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNG 80
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 33.6 bits (77), Expect = 0.16
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+V LQ+ ++ G S+ Q C Y+ +V D + A +G + GDEI +
Sbjct: 21 GKVTLQKDA-QNLIGISIGGG------AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 73
Query: 416 NGAIVSDL 423
NG +
Sbjct: 74 NGRSIKGK 81
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics
community request, protein structure initiative, PSI-2;
HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B*
3bcq_B* 1spg_B*
Length = 147
Score = 33.7 bits (76), Expect = 0.17
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 7/119 (5%)
Query: 693 KLYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLL 752
+ + Q+ + + +H T+ L + +Q +
Sbjct: 26 QALARLLIVSPWTQRHFSTFGNLSTPAAIMGNPA-VAKHGKTVMHGLDRAVQNLDDIKNT 84
Query: 753 LQQLCNL------TDPHCDEHLHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIG 805
L + DP L VC+ + L +F+ E + K +G
Sbjct: 85 YVTLSVMHSEKLFVDPDNFRLLADCITVCVAAKLGPAVFSADTQEAFQKFLAVVVSALG 143
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 35.1 bits (80), Expect = 0.18
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 18 ARKRGWKGYWVCLKGTTLLFY--PCDSREGRSVDAAPKHLIIVDGAIMQPIPEHPKRDYI 75
+ G++ W + L+++ P D+ V K P + +
Sbjct: 281 KQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHG 340
Query: 76 FCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAA 110
+ T +LF + + WV + A
Sbjct: 341 ITIVTP-DRKFLFACETESDQREWVAAFQKAVDRP 374
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport,
sugar transport, transmembrane, formylation; 2.95A
{Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A
2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 34.9 bits (80), Expect = 0.20
Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 24/191 (12%)
Query: 999 GSPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAG 1058
G K+ + + + + F + + S+ I L F AGA
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF-------NAGAP 123
Query: 1059 LVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICN 1118
V + EK+ + + ++F G A G+ I G IM +I N
Sbjct: 124 AVEAFI---EKVSRRSNFEFGRARMFGCVGWALGASIV-G-------------IMFTINN 166
Query: 1119 ALTAIYASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFIVFTQAIVELPGAPFWSII 1178
S + + + A G + A+ W +
Sbjct: 167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLS 226
Query: 1179 FFMMLLSLGLG 1189
+++ +S
Sbjct: 227 LYVIGVSCTYD 237
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.20
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 152 LAEPETKQQINEQITQW-EENLERL 175
+A+ + Q E I +W EE +RL
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRL 98
Score = 29.4 bits (65), Expect = 6.4
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 16/63 (25%)
Query: 125 QEEIFRLEKAIDSDNKLKHMADLQMSVLAEPETKQQINEQITQWEENLE------RLHCE 178
Q + RL++ +D+ +K+ E + K+ + E + E +E R+ +
Sbjct: 94 QRK--RLQE-LDAASKVM------EQEWRE-KAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Query: 179 QFR 181
F
Sbjct: 144 AFY 146
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 32.6 bits (74), Expect = 0.21
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 392 VSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMM 426
V + S+A + G E+ ++G D D +
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAV 40
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 32.3 bits (74), Expect = 0.21
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
+S++ A + GD I+ +NG +S
Sbjct: 33 LISKIFKGLAADQTEALFVGDAILSVNGEDLSSA 66
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 32.3 bits (74), Expect = 0.22
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVING 417
V+ Q+ T + M G +++ + C V+R+ + G + GDEI ING
Sbjct: 5 VQFQKNTDEPM-GITLK--------MNELNHCIVARIMHGGMIHRQGTLHVGDEIREING 55
Query: 418 AIVSDLDMMYLESVLQE 434
V++ + L+ +L+E
Sbjct: 56 ISVANQTVEQLQKMLRE 72
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 32.8 bits (75), Expect = 0.22
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 359 VELQRTT--LDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+ L R L GF++ T+ ++ YVSR+++ A +G ++ GD+I+ +
Sbjct: 21 INLTRGPSGL----GFNI-VGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
Query: 416 NGAIVSDL 423
NG + +L
Sbjct: 76 NGQDLKNL 83
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 32.8 bits (75), Expect = 0.22
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 357 YQVELQRTTLDHMWGFSVE--AELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIM 413
+ L R GF++ +N + +VS++ D A G ++ D I+
Sbjct: 10 LTLVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67
Query: 414 VINGAIVSDL 423
+NG +S
Sbjct: 68 EVNGRDLSRA 77
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 34.4 bits (78), Expect = 0.22
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 19/98 (19%)
Query: 19 RKRGWKGYWVCLKGTTLLFYPCDSREGRSVDAAPKHLI----IVDGAIMQPIPE----HP 70
K+ WK +VCL+ + L + AAP+HL + D I I +
Sbjct: 144 GKKSWKKLYVCLRRSGLYCST------KGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNA 197
Query: 71 KRDYIFCL-----STAFGDAYLFQAPCQVELENWVNSI 103
D+ C+ + L A + +W+ +
Sbjct: 198 PTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAF 235
Score = 30.1 bits (67), Expect = 5.2
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 267 ASSRDEPDKSVKVSLPENQYAHVYLKDSMTVEEFLANACSRKNLNP------MEHFVRVK 320
S + VKV + V + MT + + + +EH +
Sbjct: 1 GSHMAAAKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLG 60
Query: 321 KRREMEDH 328
R +EDH
Sbjct: 61 LERCLEDH 68
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 32.7 bits (75), Expect = 0.22
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
+S + A G + GD I+ +NG + D
Sbjct: 38 LISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 71
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 32.4 bits (74), Expect = 0.23
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 358 QVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNG-LIKGDEIMVIN 416
+V L ++ + +G + + + +V + S+A +G + +GD ++ IN
Sbjct: 5 KVTLVKSAKNEEYGLRLASHI------------FVKEISQDSLAARDGNIQEGDVVLKIN 52
Query: 417 GAIVSDLDMMYLESVLQ 433
G + + M L
Sbjct: 53 G---TVTENMSLTDAKT 66
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 33.9 bits (77), Expect = 0.25
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 391 YVSRVEDKSVAMHNGL-IKGDEIMVINGAIVSDLDMMYLESVLQ-EELSLCMMMRSSRTE 448
+V RV++ S GL D I+ ING+ ++ + + + E + M++ SS+T
Sbjct: 19 HVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTL 78
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 32.7 bits (75), Expect = 0.27
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMV 414
Y VEL+R +GFS+ N + YV R+ + A +G ++ GDEI+
Sbjct: 25 FYTVELERG--AKGFGFSLRGGREYN------MDLYVLRLAEDGPAERSGKMRIGDEILE 76
Query: 415 INGAIVSDLDMMYLESV 431
ING + +M + ++
Sbjct: 77 ING--ETTKNMKHSRAI 91
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 32.0 bits (73), Expect = 0.29
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+V + ++ + G ++ ++ R++D V I GD I I
Sbjct: 7 KEVNVYKS--EDSLGLTITDN--------GVGYAFIKRIKDGGVIDSVKTICVGDHIESI 56
Query: 416 NGAIVSDLDMMYLESVLQE 434
NG + + L+E
Sbjct: 57 NGENIVGWRHYDVAKKLKE 75
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma membrane;
HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 34.6 bits (78), Expect = 0.30
Identities = 20/210 (9%), Positives = 54/210 (25%), Gaps = 35/210 (16%)
Query: 1000 SPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGI----TLPGA 1055
+ + + +L+A+ + V + + + + I GA
Sbjct: 11 NSIKYTCILILIAFAFSVLCRLYW------VAWASEFYEFFFNDQLMITTNDGYAFAEGA 64
Query: 1056 GAGLVHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVS 1115
+ + P D + + + + + Y S
Sbjct: 65 RDMIAGFHQPN-----DLSYFGSSLSTLTYWLYSILPFSFE------------------S 101
Query: 1116 ICNALTAIYASVVVFAI-LGFKAMSNAAEGTGLAFIAAEGTG-LAFIVFTQAIVELPGAP 1173
I ++ +AS++V I L + G A + + + ++
Sbjct: 102 IILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLV 161
Query: 1174 FWSIIFFMMLLSLGLGSQIGILEGVLCTIF 1203
+I + +L + +
Sbjct: 162 LPMLILLTFIRLTINKDIFTLLLSPIFIMI 191
Score = 30.4 bits (67), Expect = 6.1
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 5/93 (5%)
Query: 976 LSSETAYFWYRTTLDVSPNIESPGSPKWWI-VLCLLLAWIIVFFIVMKGIQSSGRVVYFT 1034
+++ Y + D+ P ++ L L W+ +F
Sbjct: 52 ITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSILPFSFESIILYMSTFFA 111
Query: 1035 SMFPYIVLTIFFIRGITLPGAG--AGLVHMYTP 1065
S+ +V I R L G A L+
Sbjct: 112 SLI--VVPIILIAREYKLTTYGFIAALLGSIAN 142
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 31.9 bits (73), Expect = 0.30
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVING 417
+S + +A G I GD I+ IN
Sbjct: 33 IISSLTKGGLAERTGAIHIGDRILAINS 60
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 32.4 bits (74), Expect = 0.32
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
+S + A G + GD I+ +NG + D
Sbjct: 56 LISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 89
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 31.7 bits (72), Expect = 0.32
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 392 VSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMM 426
+ V+ S A GL GD I+ ++G ++
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTF 42
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 31.9 bits (73), Expect = 0.33
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 357 YQVELQRTT--LDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIM 413
+ VEL + L G ++ ++ + +V + S H+G I+ GD+I+
Sbjct: 6 FDVELTKNVQGL----GITIAG--YIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQII 59
Query: 414 VINGAIVSDL 423
++G +
Sbjct: 60 AVDGTNLQGF 69
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 33.9 bits (77), Expect = 0.34
Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 11/133 (8%)
Query: 350 EVCAKILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK- 408
E +V +++ G S++ R++++ +S++ A +
Sbjct: 72 EALLLQRRRVTVRKADAGG-LGISIKGG------RENKMPILISKIFKGLAADQTEALFV 124
Query: 409 GDEIMVINGAIVSDL---DMMYLESVLQEELSLCMMMRSSRTEPPETAGSGMLSATDDMI 465
GD I+ +NG +S + + +E+ L + + + + G D
Sbjct: 125 GDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPP 184
Query: 466 ESLVCPPPPSDPP 478
S + P S P
Sbjct: 185 ASPLQRQPSSPGP 197
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 34.5 bits (79), Expect = 0.34
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 11/123 (8%)
Query: 1373 VYVLSNSTAEFRNAFLKTIRQIIRESVRNMSIPMTKPGVATQIVSNTLGRHSSTGKSAQE 1432
+Y +S+ +FR A +T ++ + T+I + + + +AQ
Sbjct: 314 IYSVSHP--KFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQM 371
Query: 1433 QSMNKSSLNPGCSQTLEKSKKPPRPPQRHSSGSIEYEQQAI--IGQPQQGTQPSYVQEPQ 1490
+ M Q PPQ ++ Y Q G P QG P P
Sbjct: 372 KEMMAMMQKMQQQQA-------AYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPP 424
Query: 1491 STH 1493
Sbjct: 425 QGA 427
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 32.4 bits (74), Expect = 0.36
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 356 LYQVELQR--TTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
L+ +EL++ L G S+ N +R + +V + + A +G ++ GDE+
Sbjct: 26 LHIIELEKDKNGL----GLSL----AGNKDRSR-MSIFVVGINPEGPAAADGRMRIGDEL 76
Query: 413 MVINGAIVSDL 423
+ IN I+
Sbjct: 77 LEINNQILYGR 87
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 31.4 bits (72), Expect = 0.37
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
Y+SRV VA +G +K GD+++ +NG V
Sbjct: 33 YISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGE 66
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 31.8 bits (72), Expect = 0.40
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSD 422
VS +D + GL GD + +NG ++D
Sbjct: 40 RVSPGKDPVLFESIGLQDGDMAVALNGLDLTD 71
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 32.0 bits (73), Expect = 0.43
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 370 WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVING 417
GFSV +EN + EL +V +++ SVA +G +K D+I+ ING
Sbjct: 34 LGFSVVGLRSEN---RGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 31.5 bits (72), Expect = 0.44
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
YV R+ + A+ NG ++ GD+I+ ING D+
Sbjct: 39 YVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDM 72
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 32.0 bits (73), Expect = 0.46
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVING 417
++S + A +G ++ GD+I+ +NG
Sbjct: 41 FISFILAGGPADLSGELRKGDQILSVNG 68
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 31.4 bits (72), Expect = 0.48
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNG-LIKGDEIMVI 415
+ LQ+ + G S+ ++++ +VS + +A +G L++GD+I+++
Sbjct: 6 LTIGLQKKPGKGL-GLSI-------VGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMV 57
Query: 416 NGAIVSDL 423
NG V +
Sbjct: 58 NGEDVRNA 65
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 31.5 bits (72), Expect = 0.50
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTE--NAERQDELCCYVSRVEDKSVAMHNGLIK-GDEI 412
+++VEL + D+ G SV + YV V + A +G I GD +
Sbjct: 10 IFEVELAKN--DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67
Query: 413 MVING 417
+ +NG
Sbjct: 68 LAVNG 72
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 31.1 bits (71), Expect = 0.57
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 359 VELQR--TTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+ L R + L GF++ T+ ++ YVSR+++ A +G ++ GD+I+ +
Sbjct: 11 INLTRGPSGL----GFNI-VGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
Query: 416 NGAIVSDL 423
NG + +L
Sbjct: 66 NGQDLKNL 73
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 31.0 bits (71), Expect = 0.60
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+V L + + +GF + + +R ++ V A G IK GD ++ +
Sbjct: 5 VEVTLHKE--GNTFGFVIRG--GAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60
Query: 416 NG 417
+G
Sbjct: 61 DG 62
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 31.1 bits (71), Expect = 0.66
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVING 417
++S + A +G ++ GD+I+ +NG
Sbjct: 38 FISFILAGGPADLSGELRKGDQILSVNG 65
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 31.7 bits (72), Expect = 0.67
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
V RV +A G I+ G+E++ ING +
Sbjct: 45 TVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGT 78
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 31.0 bits (71), Expect = 0.68
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVING 417
YV V + A +G I GD ++ +NG
Sbjct: 36 YVKAVIPQGAAESDGRIHKGDRVLAVNG 63
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 31.6 bits (72), Expect = 0.73
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVING 417
+V V+ SVA + +K D+I+ IN
Sbjct: 57 FVKDVQPGSVADRDQRLKENDQILAINH 84
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 31.2 bits (71), Expect = 0.78
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
V + +A +G ++ GD I+ I G V +
Sbjct: 41 VVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGM 74
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 30.3 bits (69), Expect = 0.80
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
+ + A +G ++ GD I+ +N V
Sbjct: 28 QIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 31.7 bits (72), Expect = 0.80
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 384 RQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDLDMMYLESVLQEELSLCMMM 442
LC ++++V+ S+A G ++ GDE++ NG L+ EE + ++
Sbjct: 61 ESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNG--RL------LQGATFEE--VYNII 110
Query: 443 RSSRTEPP 450
S+ EP
Sbjct: 111 LESKPEPQ 118
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 31.4 bits (71), Expect = 0.80
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 350 EVCAKILYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK- 408
+V +V L +G ++ A +S +E S A G+++
Sbjct: 10 QVVHTETTEVVLTADP-VTGFGIQLQGS--VFATETLSSPPLISYIEADSPAERCGVLQI 66
Query: 409 GDEIMVINGAIVSDL 423
GD +M ING D
Sbjct: 67 GDRVMAINGIPTEDS 81
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 31.2 bits (71), Expect = 0.83
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMV 414
L VE+++ G S+ A + ++ +++ + VA ++ GD I+
Sbjct: 25 LRTVEMKKGP-TDSLGISI-AGGVGS--PLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVT 80
Query: 415 INGAIVSDLDMMYLESV--LQEELSLCMMMRSSRTEPPETA 453
I G S M + ++V L+ M + + ET+
Sbjct: 81 ICG--TSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETS 119
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 31.3 bits (71), Expect = 0.91
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQD-ELCCYVSRVEDKSVAMHNGLIK-GDEIM 413
+L+++ +GF+V + + + + A +G ++ GD I+
Sbjct: 19 FIHTKLRKS--SRGFGFTV-------VGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIV 69
Query: 414 VINGAIVSDL 423
+N V
Sbjct: 70 SVNDTCVLGH 79
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 30.9 bits (69), Expect = 1.1
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELC--CYVSRVEDKSVAMH--NGLIKGDEIMV 414
+ + TT GFSV E V V ++ + N + GD I+
Sbjct: 19 ISMPATTECRR-GFSVTVE-----SASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILE 72
Query: 415 INGAIVSDLDMMYLESVLQE 434
ING V L + +E +++
Sbjct: 73 INGTPVRTLRVEEVEDAIKQ 92
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 30.4 bits (69), Expect = 1.1
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDLDMMYLESVLQ 433
+V + +A +G + GD I+ ING + + M L +
Sbjct: 24 FVKEMTRTGLATKDGNLHEGDIILKING---TVTENMSLTDARK 64
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 30.8 bits (70), Expect = 1.1
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
Y+ + S A +G + GD I+ +NG+ + L
Sbjct: 39 YIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGL 72
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A
{Lucina pectinata} PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A*
3pt7_A* 3pi2_A*
Length = 152
Score = 31.4 bits (71), Expect = 1.1
Identities = 13/118 (11%), Positives = 30/118 (25%), Gaps = 6/118 (5%)
Query: 693 KLYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLL 752
Y +H + G L + + + S + + + + +L
Sbjct: 29 GFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKA-QSLVFCNGMSSFVDHLDDNDML 87
Query: 753 LQQLCNLTDPHC-----DEHLHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIG 805
+ + + H L + + GA + W T+G
Sbjct: 88 VVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLG 145
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 30.9 bits (70), Expect = 1.2
Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
++R+ + + + ++ GDEI+ + G + L
Sbjct: 60 TINRIFKGAASEQSETVQPGDEILQLGGTAMQGL 93
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 30.2 bits (68), Expect = 1.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 391 YVSRVEDKSVAMHNGLIKGDEIMVINGAIVSD 422
VS +D + GL GD + +NG ++D
Sbjct: 22 RVSPGKDPVLFESIGLQDGDMAVALNGLDLTD 53
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 30.4 bits (69), Expect = 1.3
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 371 GFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
GFS+ ++ + + VA +G + GD ++ +N + +
Sbjct: 29 GFSILD--YQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNT 80
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 30.5 bits (69), Expect = 1.3
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 389 CCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
+ ++ A + G +K G I+ +NG +
Sbjct: 33 LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGK 68
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 30.8 bits (70), Expect = 1.3
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 357 YQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVI 415
+ L+R GFS+ +L YV V K A +G +K GD+I+ +
Sbjct: 27 KSITLERG--PDGLGFSIVGGYGSP---HGDLPIYVKTVFAKGAASEDGRLKRGDQIIAV 81
Query: 416 NG 417
NG
Sbjct: 82 NG 83
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 29.9 bits (68), Expect = 1.3
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVI 415
L V + + +GF++ A+ V ++ D GL +GD I+ +
Sbjct: 4 LITVHIVKG--PMGFGFTI-------ADSPGGGGQRVKQIVDS--PRSRGLKEGDLIVEV 52
Query: 416 NGAIVSDL 423
N V L
Sbjct: 53 NKKNVQAL 60
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 30.4 bits (69), Expect = 1.5
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
YV + + A+ +G +K GD ++ +NG ++
Sbjct: 42 YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGK 75
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 30.1 bits (68), Expect = 1.8
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
VS V + A +G + GDEIM ING IV+D
Sbjct: 46 VVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDY 79
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 30.6 bits (69), Expect = 1.8
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 356 LYQVELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMV 414
+ Q +L L G V Q+ +S + +K A +G+++ GD ++
Sbjct: 28 VIQTKLTVGNLGL--GLVV---------IQNGPYLQISHLINKGAAASDGILQPGDVLIS 76
Query: 415 INGAIVSDL 423
+ A V
Sbjct: 77 VGHANVLGY 85
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular
signaling, cytoplasm, isopeptide bond, nucleus,
phosphoprotein, UBL conjugation; 2.70A {Mus musculus}
PDB: 3f89_A 2zvo_B 2zvn_B
Length = 94
Score = 29.7 bits (66), Expect = 2.0
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 117 KTGTLHLLQEEIFRLEKAIDSDNKLKHMADL-QMSVLAEPETKQQINEQITQWEENLERL 175
K + L+EE + + +++ LK AD+ + AE ++++ E+ +E LE+L
Sbjct: 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80
Query: 176 HCEQFRLR 183
E +L+
Sbjct: 81 QREFNKLK 88
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 29.8 bits (67), Expect = 2.0
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 359 VELQRTTLDHMWGFSVEAELTENAERQDELCCYVSRVEDKSVA--MHNGLIKGDEIMVIN 416
+ ++ + +GF+V+ + VSRV + A L +GD++++IN
Sbjct: 21 IRMKPDE-NGRFGFNVKGGYDQKMPV------IVSRVAPGTPADLCVPRLNEGDQVVLIN 73
Query: 417 GAIVSDL 423
G +++
Sbjct: 74 GRDIAEH 80
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 31.9 bits (73), Expect = 2.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 392 VSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD 424
V+ V+ + A GL KGD I+ N V ++
Sbjct: 387 VNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIA 419
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
maritima} PDB: 4av6_A
Length = 735
Score = 32.1 bits (73), Expect = 2.1
Identities = 61/375 (16%), Positives = 105/375 (28%), Gaps = 77/375 (20%)
Query: 796 LFDSFAGTIGLVLIALIEMLAVMFIYGHEKFTNDIYEMTGYKPGWYWQITWRFLGPAIMS 855
L +SF G I ++ I + + MF +K ++ + P +
Sbjct: 253 LLESFVGAI----VSSIILASYMFPIYVQKIGENLVHQVPKETIQAL-----ISYPIFFA 303
Query: 856 CI-LVSSIICRFLKKPSYSAWN--RAFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGV 912
+ L S++ + N R I +L + + L L
Sbjct: 304 LVGLGCSMLGILYVIVKKPSDNPQRELNISLWTSALLTVVLTAFLTYFY-----LKDLQG 358
Query: 913 WNTIHPWLGGVGISSCLVTFFVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIP 972
+ + G + + + YY T +
Sbjct: 359 LDVLGFRFGAISPWFSAIIGIFSGILIGFWAE--YY---------------TSYRYKPTQ 401
Query: 973 ECELSSETAYFWYRTTLDVSPNI--------ESPGSPKWWIVLCLLLAWIIVFFIVMKGI 1024
SS I +S P +VL +L A +F + G+
Sbjct: 402 FLGKSSIEGT---------GMVISNGLSLGMKSVFPPTLTLVLGILFAD---YFAGLYGV 449
Query: 1025 QSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGLVHM--YTPKVEKLLDPNVWLDAA-- 1080
+ M ++ ++ + G+ M P+V K+ D LDA
Sbjct: 450 AIAA-----LGMLSFVATSVSVDSYGPIADNAGGISEMCELDPEVRKITDH---LDAVGN 501
Query: 1081 TQVFYSFGLAFGS-----LIAFGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILG- 1134
T G A GS L F SY + S+ L + A V+ A+LG
Sbjct: 502 TTAAIGKGFAIGSAIFAALSLFASYMFSQISPSDIGKPPSLVLLLNMLDARVIAGALLGA 561
Query: 1135 -----FKAMSNAAEG 1144
F +A
Sbjct: 562 AITYYFSGYLISAVT 576
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit;
succinate dehydrogenase activity, cell inner membrane,
trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia
coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D*
2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Length = 115
Score = 29.8 bits (67), Expect = 2.2
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 17/110 (15%)
Query: 840 WYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIPFMVMLILEGIPLFLIEL 899
+ R + I+ + +Y W F F + L + LI
Sbjct: 16 FILV---RATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIH- 71
Query: 900 GIGQKMRLGSLGVWNT----IHP-WLGGVGISSCLVTFFVALYYNVIITW 944
+G+W + P L + +V V + Y ++ W
Sbjct: 72 --------AWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVW 113
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 30.1 bits (68), Expect = 2.3
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
V V A +G ++ GD I+ IN V
Sbjct: 47 QVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGH 80
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 29.6 bits (67), Expect = 2.3
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
+ V A +G + GDE++ ++G V+
Sbjct: 37 LIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGK 70
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 31.5 bits (70), Expect = 2.4
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 384 RQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDM 425
+ V V A H GL GD+I+ I+ ++ +
Sbjct: 492 KASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSV 533
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 29.2 bits (66), Expect = 2.4
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
Y+ + A +G ++ GDE++ ++G V
Sbjct: 30 YIGHIVPLGAADTDGRLRSGDELISVDGTPVIGK 63
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 29.7 bits (67), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVING 417
YV VE V +G IK GD ++ ++G
Sbjct: 56 YVISVEPGGVISRDGRIKTGDILLNVDG 83
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 31.2 bits (69), Expect = 2.7
Identities = 20/130 (15%), Positives = 31/130 (23%), Gaps = 4/130 (3%)
Query: 873 SAWNRAFLIPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTF 932
S W IP + G+ FL L + L G V + +
Sbjct: 62 SRWAEFLGIPTAAV----GLLGFLGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMY 117
Query: 933 FVALYYNVIITWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVS 992
+ L V+ +C Y + H + S F T
Sbjct: 118 MLYLMVAVLRQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGV 177
Query: 993 PNIESPGSPK 1002
+ P
Sbjct: 178 YANQVPPPSP 187
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A
{Lucina pectinata} PDB: 3pt7_B*
Length = 152
Score = 30.3 bits (68), Expect = 2.8
Identities = 10/118 (8%), Positives = 25/118 (21%), Gaps = 6/118 (5%)
Query: 693 KLYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLL 752
Y ++ N + + + + S + + + + + +L
Sbjct: 29 NFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNHPTMKA-QSLVFCNGMSSFVDNLDDHEVL 87
Query: 753 LQQLCNLTDPHC-----DEHLHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTIG 805
+ L + H + L L W G
Sbjct: 88 VVLLQKMAKLHFNRGIRIKELRDGYGTLLRYLEDHCHVEGSTKNAWEDFIAYICRVQG 145
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 31.1 bits (71), Expect = 2.9
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 392 VSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD 424
+ V S A GL K D I+ +N V+ +
Sbjct: 367 IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIA 399
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 31.1 bits (71), Expect = 3.1
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 392 VSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLD 424
V + S G+ GD I+ N V+D+
Sbjct: 390 VVGASENSAGWRAGIRPGDIIISANKKPVTDVK 422
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 31.3 bits (71), Expect = 3.2
Identities = 17/96 (17%), Positives = 32/96 (33%)
Query: 371 GFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIKGDEIMVINGAIVSDLDMMYLES 430
+ + L + + +S V S A GL +G IM++NG ++ L
Sbjct: 73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQ 132
Query: 431 VLQEELSLCMMMRSSRTEPPETAGSGMLSATDDMIE 466
+L + + + T G + T
Sbjct: 133 GSTRQLQIGVYKEVVGEDGEVTGGVVPIGETTMPAS 168
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 29.8 bits (67), Expect = 3.2
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 370 WGFSVEAELTENAERQDELCCYVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
G S++ ++ E +L ++ + A +G ++ D+++ +NG +
Sbjct: 39 LGVSLKG--NKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGK 91
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 29.7 bits (67), Expect = 3.3
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
YV + + A+ +G +K GD ++ +NG +
Sbjct: 61 YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGK 94
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2;
signaling protein, NPY motif, binding pocket; 2.11A
{Homo sapiens} PDB: 1y2o_A 1wdz_A
Length = 253
Score = 30.6 bits (68), Expect = 3.5
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 88 FQAPCQVELENWVNSIHSACAAAFARHRGKTGTLHLLQEEIFRLEKAIDSDNKLKHMADL 147
+ ++E + +A R K L Q E+ +L K K + +
Sbjct: 104 LLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRK------KSQGSKNP 157
Query: 148 QMSVLAEPETKQQINEQITQWEENLERLHCEQ 179
Q E + I+ + + E + +
Sbjct: 158 QKYSDKELQYIDAISNKQGELENYVSDGYKTA 189
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane
rotor, sodium transporter, H ION transport, hydrolase,
transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae}
PDB: 2cyd_A* 2db4_A* 3aou_A*
Length = 156
Score = 29.8 bits (67), Expect = 3.6
Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 11/134 (8%)
Query: 1079 AATQVFYSFGLAFGSLIA----FGSYNQPNNNCVRDVIMVSICNALTAIYASVVVFAILG 1134
A +F G A G + + +I+ + +Y V+ F I
Sbjct: 20 ATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQ-GLYGFVIAFLIFI 78
Query: 1135 FKAMSNAAEGTGLAFIAAEGTGLAFIV--FTQAIVELPGA---PFWSIIFFMMLLSLGLG 1189
+ A+ + Q V G ++ +
Sbjct: 79 NLGSDMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMV 138
Query: 1190 SQIGILEGVLCTIF 1203
IL G + +
Sbjct: 139 ETYAIL-GFVISFL 151
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 28.8 bits (65), Expect = 3.9
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVING 417
YV V A +G + GD+++ ++G
Sbjct: 41 YVKSVVKGGAADVDGRLAAGDQLLSVDG 68
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 29.3 bits (66), Expect = 4.0
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 391 YVSRVEDKSVAMHNGLIK-GDEIMVINGAIVSDL 423
+ V ++ A +G + GD+I+ +NG + +
Sbjct: 46 VIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNS 79
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus}
PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A*
3qma_A* 1myt_A* 2nrm_A*
Length = 147
Score = 29.7 bits (66), Expect = 4.5
Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 11/118 (9%)
Query: 693 KLYSSFCASHSKAQKVLHPNEGNQALQEFLSSRNPRQQHSSTLESYLIKPIQRILKYPLL 752
+ + H + QK+ P A + + H +T+ L + ++ + +
Sbjct: 24 LVLTRLFKEHPETQKLF-PKFAGIAQADIAGNAAVSA-HGATVLKKLGELLKAKGSHAAI 81
Query: 753 LQQLCNLTDPHC------DEHLHLVGVVCLISFLVGLIFTTGAGEYWLKLFDSFAGTI 804
L+ L N H + L+ V + G + +
Sbjct: 82 LKPLANS---HATKHKIPINNFKLISEVLVKVMQEKAGLDAGGQTALRNVMGIIIADL 136
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide
acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1
d.44.1.1 PDB: 3mds_A
Length = 203
Score = 30.2 bits (69), Expect = 4.6
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 607 TYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQN 654
YV NLN LE Y +L G E+ L ++ + + ++N
Sbjct: 35 AYVTNLNAALEKY-------PYLHGVEVEVLLRHLAALPQDIQTAVRN 75
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics
center for infect disease, GRAM-negative bacteria; 1.95A
{Anaplasma phagocytophilum}
Length = 227
Score = 30.3 bits (69), Expect = 4.7
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 606 RTYVKNLNGLLENY---------LEPLKKETFLSGAEINALFGN 640
+TYV LN L+ L + + SG+ A+F N
Sbjct: 51 KTYVDVLNKLVVGTEFEGLGNESLGDIVVKAHNSGSAGRAIFNN 94
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 29.9 bits (67), Expect = 4.8
Identities = 14/151 (9%), Positives = 31/151 (20%), Gaps = 10/151 (6%)
Query: 1067 VEKLLDPNVWLDAATQVFYSFGLAFGSLI--AFGSYNQPNNNCVRDVIMVSICNALTAIY 1124
+ + ++A T G ++ F + D N
Sbjct: 24 AVSVGNEVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGA 83
Query: 1125 ASVVVFAILGFKAMSNAAEGTGLAFIAAEGTGLAFI-VFTQAIVELPGAPFWSIIFFMML 1183
+ M A + + +T + S +
Sbjct: 84 DWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQS 143
Query: 1184 LSLGLGSQIGILEGVLCTIFDIEIFKRIRKP 1214
L G D+ K++ +
Sbjct: 144 RDALLA-------GETWGEKDLNKVKKLIEM 167
>3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron
transport, heme, iron, membrane, CY membrane; HET: HEM
HEC; 2.70A {Pseudomonas aeruginosa}
Length = 465
Score = 30.6 bits (69), Expect = 4.8
Identities = 27/177 (15%), Positives = 50/177 (28%), Gaps = 19/177 (10%)
Query: 768 LHLVGVVCLISFLVGL---IFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGHE 824
L+++ + LIS ++G F G YWL L F+ L A++ + A I
Sbjct: 241 LYVIIAMALISGIIGTGHHYFWIGVPGYWLWLGSVFSALEPLPFFAMV-LFAFNTINRRR 299
Query: 825 KFTNDIYEMTGYKPGWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRA----FL 880
+ + W + + + + A
Sbjct: 300 R-------DYPNRAVALWAMGTTVMAFLGAGVWGFMHTLAPVNYYTHGTQLTAAHGHMAF 352
Query: 881 IPFMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALY 937
M+++ I + L + V WL V + V + L
Sbjct: 353 YGAYAMIVMTIISYAMPRLRGIGEAMDNRSQVLEMWGFWLMTVAM----VFITLFLS 405
>1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton TR
pathway, revertant, integral membrane protein,
photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A
{Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rzz_M*
1s00_M* 3dts_M* 2j8c_M* 1aig_M* 1f6n_M* 1fnp_M* 1fnq_M*
1jh0_M* 1l9b_M* 1l9j_M* 1m3x_M* 1ogv_M* 1pcr_M* 1rg5_M*
1rgn_M* 1rqk_M* 1aij_M* 1z9k_B* 2bnp_B* ...
Length = 307
Score = 30.4 bits (68), Expect = 4.9
Identities = 39/258 (15%), Positives = 80/258 (31%), Gaps = 29/258 (11%)
Query: 778 SFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVM-FIYGHEKFTNDI------ 830
S L+G G +L + GL+ I + + F D+
Sbjct: 36 STLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLE 95
Query: 831 -----YEMTGYKP---GWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIP 882
Y ++ P G W I F+ A+ S + + + L ++AW I
Sbjct: 96 PPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIW 155
Query: 883 FMVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVII 942
++L P+ + + S W + G + +A Y +
Sbjct: 156 LWMVLGF-IRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 214
Query: 943 TWCFYYLFNSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIES----- 997
+ + ++ L S + I + ++E A ++R T+ + +E
Sbjct: 215 LFAMHG-----ATILAVSRFGGECELEQIADRGTAAERAALFWRWTMGFNATMEGIHRWA 269
Query: 998 ---PGSPKWWIVLCLLLA 1012
+ +LL+
Sbjct: 270 IWMAVLVTLTGGIGILLS 287
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A
{Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A
1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A
3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A*
1zsp_A 1n0n_A 2p4k_A ...
Length = 198
Score = 29.8 bits (68), Expect = 5.4
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 607 TYVKNLNGLLENYLEPLKKETFLSGAEIN-ALFGN 640
YV NLN E Y E L K + + AL N
Sbjct: 33 AYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFN 67
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN
domain, membrane, thiamine-binding protein; HET: BNG VIB;
2.00A {Lactococcus lactis subsp}
Length = 192
Score = 29.4 bits (66), Expect = 6.1
Identities = 19/145 (13%), Positives = 54/145 (37%), Gaps = 14/145 (9%)
Query: 1000 SPKWWIVLCLLLAWIIVFFIVMKGIQSSGRVVYFTSMFPYIVLTIFFIRGITLPGAGAGL 1059
+ + + + A + ++ + + + P ++L+ RG+T G GL
Sbjct: 17 NVRLLTEIAFMAALAFIISLIPNTVYGWI--IVEIACIPILLLS--LRRGLT-AGLVGGL 71
Query: 1060 VHMYTPKVEKLLDPNVWLDAATQVFYSFGLAFGSLIAFGSYNQPNNNCVRDVIMVSICNA 1119
+ + ++ + ++ + +Q F + +A SL G + Q +++ A
Sbjct: 72 IW----GILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVA 127
Query: 1120 LTAIYAS-----VVVFAILGFKAMS 1139
+ Y ++ ++ +K
Sbjct: 128 VLLKYFFHFIAGIIFWSQYAWKGWG 152
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C
domain, oxidoreductase, manganese, metal-binding,
mitochondrion; 1.70A {Caenorhabditis elegans} PDB:
3dc6_A
Length = 195
Score = 29.4 bits (67), Expect = 6.4
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 607 TYVKNLNGLLENYLEPLKKETFLSGAEIN-ALFGN 640
TYV NLN + E E + K + AL N
Sbjct: 34 TYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFN 68
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical
bundle, ION channel, membrane, transport protein; 3.20A
{Bacillus weihenstephanensis}
Length = 148
Score = 28.8 bits (64), Expect = 7.5
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 1178 IFFMMLLSLGLGSQIGILEGVLCTIFDIEIFKRIRKP---ILTEALKGMEKVAEHINEMQ 1234
+F ++ + +G+G G + + + I +K E ++ +E + + + E
Sbjct: 81 VFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHS 140
Query: 1235 RI 1236
R
Sbjct: 141 RQ 142
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase,
manganese, metal- binding, oxidoreductase,
phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A
1jr9_A
Length = 202
Score = 29.4 bits (67), Expect = 8.1
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 606 RTYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQN 654
TYV NLN +E T L+ + L ++ + R ++N
Sbjct: 33 NTYVTNLNKAVE-------GNTALANKSVEELVADLDSVPENIRTAVRN 74
>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton TR
pathway, revertant, integral membrane protein,
photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A
{Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rvj_L*
1ry5_L* 1rzz_L* 1s00_L* 2j8c_L* 1aig_L* 1ds8_L* 1dv3_L*
1dv6_L* 1e14_L* 1e6d_L* 1jgw_L* 1jgx_L* 1jgy_L* 1jgz_L*
1k6l_L* 1kby_L* 1l9b_L* 1l9j_L* 1m3x_L* ...
Length = 281
Score = 29.7 bits (66), Expect = 8.5
Identities = 39/257 (15%), Positives = 82/257 (31%), Gaps = 44/257 (17%)
Query: 778 SFLVGLIFTTGAGEYWLKLFDSFAGTIGLVLIALIEMLAVMFIYGH-EKFTNDIYEMTGY 836
+ + G +F G +++ G G+ + ++ + + T + ++ Y
Sbjct: 15 TLVGGNLFDFWVGPFYV-------GFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVY 67
Query: 837 KP-------------GWYWQITWRFLGPAIMSCILVSSIICRFLKKPSYSAWNRAFLIPF 883
P G WQI A +S L ICR L + + AF I
Sbjct: 68 PPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAI-L 126
Query: 884 MVMLILEGIPLFLIELGIGQKMRLGSLGVWNTIHPWLGGVGISSCLVTFFVALYYNVIIT 943
+ ++ P+ + G T W+ G + + +YN
Sbjct: 127 AYLTLVLFRPVMMGAWGYAFPYG------IWTHLDWVSNTGYT------YGNFHYNPAHM 174
Query: 944 WCFYYLF-NSFSSSLPWSSCPTDHNGTIIPECELSSETAYFWYRTTLDVSPNIES----- 997
+ F N+ + +L + + N E + + ++R + S
Sbjct: 175 IAISFFFTNALALALHGALVLSAANPEKGKEMR-TPDHENTFFRDLVGYSIGTLGIHRLG 233
Query: 998 ---PGSPKWWIVLCLLL 1011
S ++ LC+++
Sbjct: 234 LLLSLSAVFFSALCMII 250
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F
mutant, hydrogen bond, reactivity, ultra-high
resolution, oxidoreductase; 0.90A {Escherichia coli}
SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A
1mmm_A 1vew_A 3k9s_A 3ot7_A 1en5_A 1en4_A 1i08_A 1en6_A
Length = 205
Score = 29.1 bits (66), Expect = 9.2
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 607 TYVKNLNGLLENYLEPLKKETFLSGAEINALFGNILEIVAFQRQFLQN 654
TYV N N LE+ E + + L + ++ A ++ L+N
Sbjct: 33 TYVNNANAALESLPE-------FANLPVEELITKLDQLPADKKTVLRN 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 24,318,020
Number of extensions: 1481555
Number of successful extensions: 3185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3022
Number of HSP's successfully gapped: 340
Length of query: 1613
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1507
Effective length of database: 3,742,167
Effective search space: 5639445669
Effective search space used: 5639445669
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.2 bits)