BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8109
(1011 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 186/373 (49%), Gaps = 12/373 (3%)
Query: 328 LTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLS 387
LTPLH+A L IVK LL +GA N N TPL A EV YL+ + ++
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 388 V-PEGERTALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSII 445
+ ++T LH A++ G+ MV LL+ + N N G TPL + + + +E +++
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR-EGHVETVLALL 133
Query: 446 EAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLE 504
E A G T LH+A +G + + L+ + N+ G TP++ A+ +N+L+
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 193
Query: 505 IFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAI 563
I LLL G + +T LH+A + +E+ LL + G N + +G TPLH A
Sbjct: 194 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253
Query: 564 VGNQLEVFNHLIN--SNADITMYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGET 620
E+ L++ +N ++ +PLHL G++ + +K+ V+ +G T
Sbjct: 254 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 313
Query: 621 PLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN- 679
PLHVA +G ++ VKFLL + DVN KTK G + L A D+V +LL+ A N
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Query: 680 -LGDGTYTPLYTA 691
DGT TPL A
Sbjct: 373 VSSDGT-TPLAIA 384
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 172/359 (47%), Gaps = 10/359 (2%)
Query: 241 NLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAA 300
NL+ +G N S ++ +TPLH A E+ K LL+ A A K ++T LH AA
Sbjct: 32 NLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD-DQTPLHCAA 88
Query: 301 IVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDG 360
+ ++VKLL + A N+ AG TPLHIA R +E V LL+K A G
Sbjct: 89 RIGHTNMVKLLLENNANP--NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 361 CTPLFCAIAQNCLEVFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYLLKHININH 419
TPL A + V L+ + + T LH+A NL++V LL H
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 420 QDK-DGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV 478
+G+TPL + K Q +EV S+++ G A+ + G T LHLA G+ MV L+
Sbjct: 207 SPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 265
Query: 479 -KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIE 537
K + N N G TP++ + H+ + ++L+K G V + +T LHVA + +I+
Sbjct: 266 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 325
Query: 538 MVSFLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACA 595
+V FLL H VN + G +PLH A ++ L+ + A +D LA A
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 180/365 (49%), Gaps = 18/365 (4%)
Query: 524 FTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADIT 582
T LHVA + +V LL N+ + K TPLH A EV +L+ + A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 583 MYKND--SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLN 639
D +PLH A G+ +M+ ++ + N+ G TPLH+A G +E V LL
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 640 TKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNL-GDGTYTPLYTALMKDPSL 698
K TK G T L A ++ + E+LLE +A N G TPL+ A+ + +L
Sbjct: 135 -KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN-NL 192
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE---ECNADITLRNFNN 755
DI+K+L+ G + + A TPLH A+ + ++AR L++ NA+ +
Sbjct: 193 DIVKLLLPRGGSPH--SPAWNGYTPLHIAAKQNQV-EVARSLLQYGGSANAE----SVQG 245
Query: 756 RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTN 815
T L+ AA + +++ LL A+ ++ + +PL ++G + D L+++ +
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 816 LRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLL 875
T + G T LH A+ + + ++K LL++ AD+NA+ K G H A Q + DIVT LL
Sbjct: 306 -ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364
Query: 876 DAGSN 880
G++
Sbjct: 365 KNGAS 369
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 116/424 (27%), Positives = 187/424 (44%), Gaps = 53/424 (12%)
Query: 394 TALHMASQFGNLEMV-NYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
T LH+AS G+L +V N L + + N + TPL + + EV +++ A +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVN 74
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
AK D T LH A G+ MV L++ + + N G TP++ A + H+E LL+
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEV 570
A A K FT LHVA ++ + + LL N G TPLH A+ N L++
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI 194
Query: 571 FNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVS 627
L+ + + +PLH+A +++ ++Y N E+ G TPLH+A
Sbjct: 195 VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
Query: 628 HGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE----ANADVNLGDG 683
G E V LL +K + N K G T L + + + ++L++ +A +G
Sbjct: 255 EGHAEMVALLL-SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-- 311
Query: 684 TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEE 743
YTPL+ A ++ ++K L+++ ADVN + Y +PLH A+ +G
Sbjct: 312 -YTPLHVASHYG-NIKLVKFLLQHQADVNAKTKLGY--SPLHQAAQQGHT---------- 357
Query: 744 CNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEI 803
D++ LLK GA P+ + T+PL + R G +
Sbjct: 358 -------------------------DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV 392
Query: 804 VDTL 807
D L
Sbjct: 393 TDVL 396
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 19/286 (6%)
Query: 206 PEYLSHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETD------ 259
P +++ +G+ AL EK+ A + PL++ K + + ++E D
Sbjct: 116 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175
Query: 260 -----TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDY 314
TPLH A+ ++++++VKLLL +G +P + T LH+AA V++ + L Y
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQVEVARSLLQY 234
Query: 315 GAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLE 374
G S N ++V G+TPLH+A + E+V +LL K A+ N GN G TPL + +
Sbjct: 235 GG--SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292
Query: 375 VFNYLVNHG--CDLSVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCS 431
V + L+ HG D + G T LH+AS +GN+++V +LL+H ++N + K G++PL +
Sbjct: 293 VADVLIKHGVMVDATTRMG-YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351
Query: 432 IKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYL 477
+ Q ++ +++ GA DGTT L +A G +++ + L
Sbjct: 352 AQ-QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 144/305 (47%), Gaps = 9/305 (2%)
Query: 588 SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+PLH+A G++ ++ ++ N+ N ETPLH+A G E K+LL K VN
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-AKVN 74
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLV 705
K KD T L A ++V++LLE NA+ NL +TPL+ A + ++ +L
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 706 KYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFG 765
K + +T + TPLH A+ G +A L+E +A N T L+ A
Sbjct: 135 KEASQACMTKKG---FTPLHVAAKYGKVR-VAELLLER-DAHPNAAGKNGLTPLHVAVHH 189
Query: 766 NNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTA 825
NNLD++K LL G P +PL + +Q E+ +LL+Y N +++ G T
Sbjct: 190 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTP 248
Query: 826 LHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKAT 885
LH AA +++ LLL A+ N +K G H Q + + L+ G ++ T
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 886 KYRMT 890
+ T
Sbjct: 309 RMGYT 313
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 193/413 (46%), Gaps = 25/413 (6%)
Query: 460 TALHLACYFGNLAMV-NYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAV 518
T LH+A + G+L +V N L + N N +TP++ A + H E+ LL+ A V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 519 KMKSNFTCLHVACEFASIEMVSFLL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINS 577
K K + T LH A MV LL ++ NL G TPLH A +E L+
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 578 NADIT--MYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAV 634
A K +PLH+A G + + ++ N G TPLHVAV H L+ V
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 635 KFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE----ANADVNLGDGTYTPLYT 690
K LL + + +G T L A ++++ LL+ ANA+ G TPL+
Sbjct: 196 KLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG---VTPLHL 251
Query: 691 ALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEE-CNADIT 749
A ++ +++ +L+ A+ NL N++ +TPLH + G +A L++ D T
Sbjct: 252 A-AQEGHAEMVALLLSKQANGNLGNKSG--LTPLHLVAQEGHV-PVADVLIKHGVMVDAT 307
Query: 750 LRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLE 809
R T L+ A+ N+ L+KFLL+ AD + SPL + +QG +IV LL+
Sbjct: 308 TRM--GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 810 YNADTNLRTIKHGSTALHTA---AFHNQLDIIKLLLKYNADINAEDKYGKIAF 859
A N G+T L A + + D++K++ + + DK+ +++F
Sbjct: 366 NGASPN-EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH-RMSF 416
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A N +E+VKLLLE GA+ A +K+ RT LH+AA +++VKLL + GA+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGAD-- 60
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
VN ++ G TPLH+A R LE+VK+LL+ GAD+N+ + +G TPL A LEV L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 380 VNHGC 384
+ G
Sbjct: 121 LEAGA 125
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
N RT L+ AA +L+++K LL+AGAD + D +PL + R G E+V LLE AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
N + K+G T LH AA + L+++KLLL+ AD+NA+DK G+ H A + + ++V
Sbjct: 61 VNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 874 LLDAGS 879
LL+AG+
Sbjct: 120 LLEAGA 125
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 3/122 (2%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
RT LH+AA +++VKLL + GA+ VN ++ G TPLH+A R LE+VK+LL+ GAD
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE-GERTALHMASQFGNLEMVNYL 411
+N+ + +G TPL A LEV L+ G D++ + RT LH+A++ G+LE+V L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 412 LK 413
L+
Sbjct: 121 LE 122
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G TPLH+A R LE+VK+LL+ GAD+N+ + +G TPL A LEV L+ G D+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 387 SVPE-GERTALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSI 444
+ + RT LH+A++ G+LE+V LL+ ++N +DK+G TPL + + LEV +
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLL 120
Query: 445 IEAGA 449
+EAGA
Sbjct: 121 LEAGA 125
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Query: 423 DGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVK-HI 481
+G TPL + + LEV ++EAGAD+ AK +G T LHLA G+L +V L++
Sbjct: 1 NGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+++ G+TP++ A +N HLE+ LLL+ GADV K K+ T LH+A +E+V
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 542 LL 543
LL
Sbjct: 120 LL 121
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 457 DGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+G T LHLA G+L +V L++ D+N+++ G+TP++ A +N HLE+ LLL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHL 574
V K K+ T LH+A +E+V LL + VN +D G TPLH A LEV L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 575 INSNA 579
+ + A
Sbjct: 121 LEAGA 125
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 78/124 (62%), Gaps = 4/124 (3%)
Query: 588 SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+PLHLA G+++++ ++ DVN ++ G TPLH+A +G LE VK LL DVN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVN 62
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLV 705
K K+G T L A + L++V++LLEA ADVN D TPL+ A ++ L+++K+L+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA-ARNGHLEVVKLLL 121
Query: 706 KYGA 709
+ GA
Sbjct: 122 EAGA 125
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G TPLH+A +G LE VK LL DVN K K+G T L A + L++V++LLEA AD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 678 VNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
VN D TPL+ A ++ L+++K+L++ GADVN ++ TPLH A+ G ++
Sbjct: 61 VNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHL-EV 116
Query: 737 ARFLVE 742
+ L+E
Sbjct: 117 VKLLLE 122
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDV 611
G TPLH A LEV L+ + AD+ + +PLHLA G+++++ ++ DV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N ++ G TPLH+A +G LE VK LL DVN K K+G T L A + L++V++L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 672 LEANA 676
LEA A
Sbjct: 121 LEAGA 125
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
TPLH A+ G ++ + L+E AD+ ++ N RT L+ AA +L+++K LL+AGAD
Sbjct: 4 TPLHLAARNGHL-EVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
+ D +PL + R G E+V LLE AD N + K+G T LH AA + L+++KLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLL 120
Query: 842 LKYNA 846
L+ A
Sbjct: 121 LEAGA 125
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 14/138 (10%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L A + ++ KLL++ G +N DK TPLH A N +E+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----------NGRTPLHLAARNGHLEV 50
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
VKLLLE GA+ A +K+ RT LH+AA +++VKLL + GA+ VN ++ G TPLH+
Sbjct: 51 VKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHL 107
Query: 334 ACRRKCLEIVKILLDKGA 351
A R LE+VK+LL+ GA
Sbjct: 108 AARNGHLEVVKLLLEAGA 125
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 81/130 (62%), Gaps = 6/130 (4%)
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGA 709
+G T L A + L++V++LLEA ADVN D TPL+ A ++ L+++K+L++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGA 59
Query: 710 DVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLD 769
DVN ++ TPLH A+ G ++ + L+ E AD+ ++ N RT L+ AA +L+
Sbjct: 60 DVNAKDKNGR--TPLHLAARNGHL-EVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 770 LLKFLLKAGA 779
++K LL+AGA
Sbjct: 116 VVKLLLEAGA 125
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 359 DGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE-GERTALHMASQFGNLEMVNYLLK-HIN 416
+G TPL A LEV L+ G D++ + RT LH+A++ G+LE+V LL+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 417 INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
+N +DK+G TPL + + LEV ++EAGAD+ AK +G T LHLA G+L +V
Sbjct: 61 VNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 477 LVK 479
L++
Sbjct: 120 LLE 122
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + R G E+V LLE AD N + K+G T LH AA + L+++KLLL+ AD+N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
A+DK G+ H A + + ++V LL+AG+++ K T
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 525 TCLHVACEFASIEMVSFLL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITM 583
T LH+A +E+V LL + VN +D G TPLH A LEV L+ + AD+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 584 YKND--SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLL 638
+ +PLHLA G+++++ ++ DVN ++ G TPLH+A +G LE VK LL
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA + L+++KLLL+ AD+NA+DK G+ H A + + ++V LL+AG+++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 882 EKATKYRMT 890
K T
Sbjct: 62 NAKDKNGRT 70
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 11/164 (6%)
Query: 252 SRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLL 311
+R+IE A N + + VK L+E GA+ A + S RT LH AA +IVKLL
Sbjct: 5 GKRLIE-------AAENGNKDRVKDLIENGADVNASD-SDGRTPLHYAAKEGHKEIVKLL 56
Query: 312 FDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
GA+ VN ++ G TPLH A + EIVK+L+ KGAD+N+ + DG TPL A +
Sbjct: 57 ISKGAD--VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG 114
Query: 372 CLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKH 414
E+ L++ G D++ + + RT L +A + GN E+V L K
Sbjct: 115 HKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + D K L++ G +N D + TPLH A E+VK
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDS-----------DGRTPLHYAAKEGHKEIVK 54
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
LL+ KGA+ A + S RT LH AA +IVKLL GA+ VN ++ G TPLH A
Sbjct: 55 LLISKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLISKGAD--VNAKDSDGRTPLHYAA 111
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGC 384
+ EIVK+L+ KGAD+N+ + DG TPL A E+ L G
Sbjct: 112 KEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ GN + V L+++ ++N D DG TPL + K + E+ +I GAD+ AK D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAK-EGHKEIVKLLISKGADVNAKDSD 69
Query: 458 GTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LH A G+ +V L+ K D+N+++ G+TP+++A K H EI LL+ GADV
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSHIG 547
T L +A E + E+V L G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNH 502
+IE GAD+ A DG T LH A G+ +V L+ K D+N+++ G+TP+++A K H
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 82
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHC 561
EI LL+ GADV K T LH A + E+V L+S VN D+ G TPL
Sbjct: 83 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDL 142
Query: 562 A 562
A
Sbjct: 143 A 143
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQ 401
VK L++ GAD+N+ + DG TPL A + E+ L++ G D++ + + RT LH A++
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK 79
Query: 402 FGNLEMVNYLL-KHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTT 460
G+ E+V L+ K ++N +D DG TPL + K + E+ +I GAD+ DG T
Sbjct: 80 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK-EGHKEIVKLLISKGADVNTSDSDGRT 138
Query: 461 ALHLACYFGNLAMVNYLVKH 480
L LA GN +V L K
Sbjct: 139 PLDLAREHGNEEIVKLLEKQ 158
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 379 LVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLL-KHININHQDKDGWTPLTCSIKGQA 436
L+ +G D++ + + RT LH A++ G+ E+V L+ K ++N +D DG TPL + K +
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK-EG 81
Query: 437 SLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIY 495
E+ +I GAD+ AK DG T LH A G+ +V L+ K D+N+ + G+TP+
Sbjct: 82 HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLD 141
Query: 496 FAIKNNHLEIFNLLLKLGA 514
A ++ + EI LL K G
Sbjct: 142 LAREHGNEEIVKLLEKQGG 160
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 7/150 (4%)
Query: 593 ACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKD 651
A GN D + ++ DVN + G TPLH A G E VK L+ +K DVN K D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSD 69
Query: 652 GSTALFFACYDKRLDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGAD 710
G T L +A + ++V++L+ ADVN D TPL+ A K+ +I+K+L+ GAD
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA-AKEGHKEIVKLLISKGAD 128
Query: 711 VNLTNEACYYMTPLHYASYRGDCNDIARFL 740
VN ++ TPL A G+ +I + L
Sbjct: 129 VNTSD--SDGRTPLDLAREHGN-EEIVKLL 155
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 36/177 (20%)
Query: 465 ACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN 523
A GN V L+++ D+N+ + G+TP+++A K H EI LL+ GAD
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD-------- 62
Query: 524 FTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITM 583
VN +D+ G TPLH A E+ LI+ AD+
Sbjct: 63 ------------------------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 98
Query: 584 YKND--SPLHLACATGNMDMITYAM-KYFDVNIENDIGETPLHVAVSHGCLEAVKFL 637
+D +PLH A G+ +++ + K DVN + G TPL +A HG E VK L
Sbjct: 99 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 7/159 (4%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAM-KYFDV 611
G + A GN+ V + LI + AD+ +D +PLH A G+ +++ + K DV
Sbjct: 5 GKRLIEAAENGNKDRVKD-LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N ++ G TPLH A G E VK L+ +K DVN K DG T L +A + ++V++L
Sbjct: 64 NAKDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 672 LEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGA 709
+ ADVN D TPL A + + +I+K+L K G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLA-REHGNEEIVKLLEKQGG 160
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 1/140 (0%)
Query: 743 ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYE 802
E AD+ + + RT L++AA + +++K L+ GAD + D +PL + ++G E
Sbjct: 25 ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKE 84
Query: 803 IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
IV L+ AD N + G T LH AA +I+KLL+ AD+N D G+ A
Sbjct: 85 IVKLLISKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
Query: 863 CQAKNWDIVTFLLDAGSNIE 882
+ N +IV L G +E
Sbjct: 144 REHGNEEIVKLLEKQGGWLE 163
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA N D +K L++ GAD + D +PL + ++G EIV L+ AD N +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD-SD 69
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA +I+KLL+ AD+NA+D G+ H A + + +IV L+ G+++
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 210 SHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNS 269
S S G L +A +E +I KLL+ KG +N D + TPLH A
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS-----------DGRTPLHYAAKEG 81
Query: 270 DIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLT 329
E+VKLL+ KGA+ + + S RT LH AA +IVKLL GA+ VN + G T
Sbjct: 82 HKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD--VNTSDSDGRT 138
Query: 330 PLHIACRRKCLEIVKILLDKGA 351
PL +A EIVK+L +G
Sbjct: 139 PLDLAREHGNEEIVKLLEKQGG 160
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
L+ + G + V L+E AD N + G T LH AA +I+KLL+ AD+NA+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
D G+ H A + + +IV L+ G+++
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADV 96
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 151/316 (47%), Gaps = 35/316 (11%)
Query: 253 RRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLF 312
R +E + L A+ N D++LV+ LLE GAN E+ T LH A + DIV+LL
Sbjct: 20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 79
Query: 313 DYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNC 372
+GA+ + +N G TP +A ++++K+ L KGAD+N + G T A
Sbjct: 80 RHGADPVLRKKN--GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137
Query: 373 LEVFNYLVNHGCDLS-----------VPEGERTALHMASQFGNLEMVNYLLKHI--NINH 419
++ +L G +++ + +G TAL A++ G++E++ LL + ++N
Sbjct: 138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197
Query: 420 QDKDGWTPLTCSIKGQASLEV---FHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
D G L ++ +V H +++ GAD+ + G T L LA +L +V
Sbjct: 198 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR 257
Query: 477 LV--KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA-----DVAVKMKSNFTCLHV 529
L+ +HI+IN + GKT + A++ +I LL K GA D+ + + N+
Sbjct: 258 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDH--- 314
Query: 530 ACEFASIEMVSFLLSH 545
+V LLSH
Sbjct: 315 -------SLVKVLLSH 323
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 149/326 (45%), Gaps = 47/326 (14%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDG-WTPLTCSIKGQASLEVFHSIIEAGADIKAKLM 456
A Q ++++V LL+ N+N Q+++G WTPL +++ + ++ ++ GAD +
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSREDIVELLLRHGADPVLRKK 90
Query: 457 DGTTALHLACYFGNLAMVN-YLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+G T LA G++ ++ +L K D+N + G T A ++ L K GA+
Sbjct: 91 NGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 150
Query: 516 VAVKMKS----------NFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAI 563
V ++ K+ T L A E +E++ LL +G VN DN G L A+
Sbjct: 151 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 210
Query: 564 VGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLH 623
L + ++D+ ++ HL G DVN+ + G+TPL
Sbjct: 211 ----------LSSDDSDV-----EAITHLLLDHG-----------ADVNVRGERGKTPLI 244
Query: 624 VAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDG 683
+AV L V+ LL ++I++N DG TAL A K + E+L + A + GD
Sbjct: 245 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD- 303
Query: 684 TYTPLYTALMKDPSLDIIKMLVKYGA 709
L ++ ++K+L+ +GA
Sbjct: 304 ----LVMTARRNYDHSLVKVLLSHGA 325
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 688 LYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNAD 747
L +++ +D+++ L++ GA+VN E + TPLH A + DI L+ AD
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNA-VQMSREDIVELLLRH-GAD 84
Query: 748 ITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTL 807
LR N T AA ++ LLK L GAD + D + + + G + + L
Sbjct: 85 PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
Query: 808 LEYNADTNLRT---------IKHGSTALHTAAFHNQLDIIKLLL-KYNADINAEDKYGKI 857
+ A+ NLR K G+TAL AA ++++K+LL + AD+NA D G+
Sbjct: 145 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 204
Query: 858 AF-HSACQAKNWD---IVTFLLDAGSNI 881
A H+ + + D I LLD G+++
Sbjct: 205 ALIHALLSSDDSDVEAITHLLLDHGADV 232
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 21/237 (8%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGD--GTYTPLYTALMKDPSLDIIKMLVKYGADVNL 713
L A ++ +DLV+ LLE A+VN + G +TPL+ A+ DI+++L+++GAD L
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE-DIVELLLRHGADPVL 87
Query: 714 TNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKF 773
+ TP A+ G + FL + AD+ +F TA AA + LKF
Sbjct: 88 RKKNG--ATPFILAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKF 143
Query: 774 LLKAGA----------DPDILDLKDTSPLLSSCRQGLYEIVDTLL-EYNADTNLRTIKHG 822
L K GA D + L + L+ + +G E++ LL E AD N
Sbjct: 144 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 203
Query: 823 STALHTAAFHNQLD---IIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
+ +H + D I LLL + AD+N + GK A + K+ +V LL+
Sbjct: 204 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 20/254 (7%)
Query: 614 ENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE 673
E + G TPLH AV + V+ LL D + K+G+T A + L+++ L
Sbjct: 55 EEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLS 113
Query: 674 ANADVNLGDGTYTPLYTALMKDP---SLDIIKMLVKYGADVNL---TNEACYYM-----T 722
ADVN D Y +TA M+ + +K L K GA+VNL T E + T
Sbjct: 114 KGADVNECD-FYG--FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 170
Query: 723 PLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLD----LLKFLLKAG 778
L A+ +G ++ + L++E AD+ + R AL A ++ + LL G
Sbjct: 171 ALMDAAEKGHV-EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 229
Query: 779 ADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDII 838
AD ++ + +PL+ + + +V LLE T G TAL A I
Sbjct: 230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289
Query: 839 KLLLKYNADINAED 852
+LL K A + D
Sbjct: 290 ELLCKRGASTDCGD 303
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 786 LKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
++D L+ + + ++V LLE A+ N + + G T LH A ++ DI++LLL++
Sbjct: 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 82
Query: 846 ADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
AD K G F A A + ++ L G+++ + Y T
Sbjct: 83 ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT 127
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 88/164 (53%), Gaps = 11/164 (6%)
Query: 252 SRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLL 311
+R+IE A N + + VK LLE GA+P A + S RT LH AA +IVKLL
Sbjct: 5 GKRLIE-------AAENGNKDRVKDLLENGADPNASD-SDGRTPLHYAAENGHKEIVKLL 56
Query: 312 FDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
GA+ N ++ G TPLH A EIVK+LL KGAD N+ + DG TPL A
Sbjct: 57 LSKGAD--PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG 114
Query: 372 CLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKH 414
E+ L++ G D + + + RT L +A + GN E+V L K
Sbjct: 115 HKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + D K L++ G N D + TPLH A N E+VK
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGADPNASDS-----------DGRTPLHYAAENGHKEIVK 54
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
LLL KGA+P A + S RT LH AA +IVKLL GA+ N ++ G TPLH A
Sbjct: 55 LLLSKGADPNAKD-SDGRTPLHYAAENGHKEIVKLLLSKGAD--PNAKDSDGRTPLHYAA 111
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGC 384
EIVK+LL KGAD N+ + DG TPL A E+ L G
Sbjct: 112 ENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNH 502
++E GAD A DG T LH A G+ +V L+ K D N+++ G+TP+++A +N H
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH 82
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHC 561
EI LLL GAD K T LH A E E+V LLS N D+ G TPL
Sbjct: 83 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDL 142
Query: 562 A 562
A
Sbjct: 143 A 143
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ GN + V LL++ + N D DG TPL + + E+ ++ GAD AK D
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAE-NGHKEIVKLLLSKGADPNAKDSD 69
Query: 458 GTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LH A G+ +V L+ K D N+++ G+TP+++A +N H EI LLL GAD
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSHIG 547
T L +A E + E+V L G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
Query: 743 ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYE 802
E AD + + RT L++AA + +++K LL GADP+ D +PL + G E
Sbjct: 25 ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE 84
Query: 803 IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
IV LL AD N + G T LH AA + +I+KLLL AD N D G+ A
Sbjct: 85 IVKLLLSKGADPNAKD-SDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Query: 863 CQAKNWDIVTFLLDAGSNIE 882
+ N +IV L G +E
Sbjct: 144 REHGNEEIVKLLEKQGGWLE 163
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA N D +K LL+ GADP+ D +PL + G EIV LL AD N +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD-SD 69
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
G T LH AA + +I+KLLL AD NA+D G+ H A + + +IV LL G++
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQ 401
VK LL+ GAD N+ + DG TPL A E+ L++ G D + + + RT LH A++
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE 79
Query: 402 FGNLEMVNYLL-KHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTT 460
G+ E+V LL K + N +D DG TPL + + E+ ++ GAD DG T
Sbjct: 80 NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE-NGHKEIVKLLLSKGADPNTSDSDGRT 138
Query: 461 ALHLACYFGNLAMVNYLVKH 480
L LA GN +V L K
Sbjct: 139 PLDLAREHGNEEIVKLLEKQ 158
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 210 SHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNS 269
S S G L +A + +I KLL+ KG N D + TPLH A N
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS-----------DGRTPLHYAAENG 81
Query: 270 DIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLT 329
E+VKLLL KGA+P A + S RT LH AA +IVKLL GA+ N + G T
Sbjct: 82 HKEIVKLLLSKGADPNAKD-SDGRTPLHYAAENGHKEIVKLLLSKGAD--PNTSDSDGRT 138
Query: 330 PLHIACRRKCLEIVKILLDKGA 351
PL +A EIVK+L +G
Sbjct: 139 PLDLAREHGNEEIVKLLEKQGG 160
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
++LGK I A N + +LL + GAD T LH A E E+V LLS
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMIT 603
N +D+ G TPLH A E+ L++ AD +D +PLH A G+ +++
Sbjct: 61 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVK 120
Query: 604 YAM-KYFDVNIENDIGETPLHVAVSHGCLEAVKFL 637
+ K D N + G TPL +A HG E VK L
Sbjct: 121 LLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 559 LHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAM-KYFDVNIEN 615
+ A GN+ V + L+ + AD +D +PLH A G+ +++ + K D N ++
Sbjct: 9 IEAAENGNKDRVKD-LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 616 DIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
G TPLH A +G E VK LL +K D N K DG T L +A + ++V++LL
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 676 ADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGA 709
AD N D TPL A + + +I+K+L K G
Sbjct: 127 ADPNTSDSDGRTPLDLA-REHGNEEIVKLLEKQGG 160
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + T L+ AA +L++++ LLK GAD + LD
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLR-TIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
++PL + ++G EIV+ LL+Y AD N TI GST LH AA L+I+++LLKY A
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI--GSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFL 874
D+NA+DK+GK AF + N D+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITM--YKNDSPLHLACATGNMDMITYA 605
VN +D G TPLH A LE+ L+ + AD+ + +PLHLA G+++++
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+KY DVN ++ IG TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEIL 671
DL EIL
Sbjct: 159 EDLAEIL 165
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A E + T LH+AA V ++IV++L GA+ VN + +G TPLH+
Sbjct: 30 VRILMANGADVNA-EDTYGDTPLHLAARVGHLEIVEVLLKNGAD--VNALDFSGSTPLHL 86
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A +R LEIV++LL GAD+N+ + G TPL A LE+ L+ +G D++ +
Sbjct: 87 AAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 393 RTALHMASQFGNLEMVNYL 411
+TA ++ GN ++ L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + R G EIV+ LL+ AD N
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS- 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
GST LH AA L+I+++LLKY AD+NA+D G H A + +IV LL G+++
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N +D G TPL + + LE+ +++ GAD+ A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAAR-VGHLEIVEVLLKNGADVNALDFS 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G+T LHLA G+L +V L+K+ D+N+++ +G TP++ A HLEI +LLK GADV
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N D Y DTPLH A +E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAED-----TYG------DTPLHLAARVGHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A++ S T LH+AA ++IV++L YGA+ VN + G TPLH+A
Sbjct: 65 VLLKNGADVNALDFS-GSTPLHLAAKRGHLEIVEVLLKYGAD--VNADDTIGSTPLHLAA 121
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
LEIV++LL GAD+N+ + G T +I
Sbjct: 122 DTGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN E+ G+TPLH+A G LE V+ LL DVN GST L A L++VE
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKN-GADVNALDFSGSTPLHLAAKRGHLEIVE 97
Query: 670 ILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D TPL+ A L+I+++L+KYGADVN
Sbjct: 98 VLLKYGADVNADDTIGSTPLHLA-ADTGHLEIVEVLLKYGADVN 140
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+E+ G TP++ A + HLEI +LLK GADV S T LH+A + +E+V
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEV 98
Query: 542 LLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LL + VN D G TPLH A LE+ L+ AD+
Sbjct: 99 LLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN + G T L A L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 675 NADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D TPL+ A K L+I+++L+KYGADVN + TPLH A+ G
Sbjct: 70 GADVNALDFSGSTPLHLA-AKRGHLEIVEVLLKYGADVNADD--TIGSTPLHLAADTGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+ L + AD+ ++ +TA + + N DL + L
Sbjct: 127 EIVEVLL--KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 138/277 (49%), Gaps = 20/277 (7%)
Query: 256 IETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYG 315
+E + L A+ N D++LV+ LLE GAN E+ T LH A + DIV+LL +G
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 316 AEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEV 375
A+ + +N G TP +A ++++K+ L KGAD+N + G T A ++
Sbjct: 63 ADPVLRKKN--GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 376 FNYLVNHGCDLS-----------VPEGERTALHMASQFGNLEMVNYLLKHI--NINHQDK 422
+L G +++ + +G TAL A++ G++E++ LL + ++N D
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 423 DGWTPLTCSIKGQASLEV---FHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV- 478
G L ++ +V H +++ GAD+ + G T L LA +L +V L+
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
Query: 479 -KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA 514
+HI+IN + GKT + A++ +I LL K GA
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 137/299 (45%), Gaps = 42/299 (14%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDG-WTPLTCSIKGQASLEVFHSIIEAGADIKAKLM 456
A Q ++++V LL+ N+N Q+++G WTPL +++ + ++ ++ GAD +
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSREDIVELLLRHGADPVLRKK 70
Query: 457 DGTTALHLACYFGNLAMVN-YLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+G T LA G++ ++ +L K D+N + G T A ++ L K GA+
Sbjct: 71 NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130
Query: 516 VAVKMKS----------NFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAI 563
V ++ K+ T L A E +E++ LL +G VN DN G L A+
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 190
Query: 564 VGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLH 623
L + ++D+ ++ HL G DVN+ + G+TPL
Sbjct: 191 ----------LSSDDSDV-----EAITHLLLDHGA-----------DVNVRGERGKTPLI 224
Query: 624 VAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
+AV L V+ LL ++I++N DG TAL A K + E+L + A + GD
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 17/203 (8%)
Query: 693 MKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRN 752
+++ +D+++ L++ GA+VN E + TPLH A + DI L+ AD LR
Sbjct: 13 VQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNA-VQMSREDIVELLLRH-GADPVLRK 69
Query: 753 FNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNA 812
N T AA ++ LLK L GAD + D + + + G + + L + A
Sbjct: 70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Query: 813 DTNLRT---------IKHGSTALHTAAFHNQLDIIKLLL-KYNADINAEDKYGKIAF-HS 861
+ NLR K G+TAL AA ++++K+LL + AD+NA D G+ A H+
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189
Query: 862 ACQAKNWD---IVTFLLDAGSNI 881
+ + D I LLD G+++
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADV 212
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 21/237 (8%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGD--GTYTPLYTALMKDPSLDIIKMLVKYGADVNL 713
L A ++ +DLV+ LLE A+VN + G +TPL+ A+ DI+++L+++GAD L
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE-DIVELLLRHGADPVL 67
Query: 714 TNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKF 773
+ TP A+ G + FL + AD+ +F TA AA + LKF
Sbjct: 68 RKK--NGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 774 LLKAGA----------DPDILDLKDTSPLLSSCRQGLYEIVDTLL-EYNADTNLRTIKHG 822
L K GA D + L + L+ + +G E++ LL E AD N
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183
Query: 823 STALHTAAFHNQLD---IIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
+ +H + D I LLL + AD+N + GK A + K+ +V LL+
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 20/254 (7%)
Query: 614 ENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE 673
E + G TPLH AV + V+ LL D + K+G+T A + L+++ L
Sbjct: 35 EEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93
Query: 674 ANADVNLGDGTYTPLYTALMKDP---SLDIIKMLVKYGADVNL---TNEACYYM-----T 722
ADVN D Y +TA M+ + +K L K GA+VNL T E + T
Sbjct: 94 KGADVNECD-FYG--FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150
Query: 723 PLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLD----LLKFLLKAG 778
L A+ +G ++ + L++E AD+ + R AL A ++ + LL G
Sbjct: 151 ALMDAAEKGHV-EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209
Query: 779 ADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDII 838
AD ++ + +PL+ + + +V LLE T G TAL A I
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
Query: 839 KLLLKYNADINAED 852
+LL K A + D
Sbjct: 270 ELLCKRGASTDCGD 283
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 786 LKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
++D L+ + + ++V LLE A+ N + + G T LH A ++ DI++LLL++
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 846 ADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMTFESSKVVEKHVAKL- 904
AD K G F A A + ++ L G+++ + Y T V V L
Sbjct: 63 ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122
Query: 905 ----RAANI 909
R AN+
Sbjct: 123 FLYKRGANV 131
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + T L+ AA +L++++ LLK GAD D D+
Sbjct: 21 AARAGQDDEVRILIAN-GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
+PL + G EIV+ LL+Y AD N + GST LH AA L+I+++LLKY AD
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT-GSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 848 INAEDKYGKIAFHSACQAKNWDI 870
+NA+DK+GK AF + N D+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDL 161
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A++ + T LH+AA+ ++IV++L +GA+ V+ +V G TPLH+
Sbjct: 30 VRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKHGAD--VDAADVYGFTPLHL 86
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A LEIV++LL GAD+N+ + G TPL A + LE+ L+ +G D++ +
Sbjct: 87 AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
Query: 393 RTALHMASQFGNLEM 407
+TA ++ GN ++
Sbjct: 147 KTAFDISIDNGNEDL 161
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDK-GVPLNYSRRIIETDTPLHSAILNSDIELV 274
K L A + + D ++L+ G +N VD G+ TPLH A ++ +E+V
Sbjct: 16 KKLLEAARAGQDDEVRILIANGADVNAVDNTGL------------TPLHLAAVSGHLEIV 63
Query: 275 KLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIA 334
++LL+ GA+ A + T LH+AA+ ++IV++L YGA+ VN ++ G TPLH+A
Sbjct: 64 EVLLKHGADVDAAD-VYGFTPLHLAAMTGHLEIVEVLLKYGAD--VNAFDMTGSTPLHLA 120
Query: 335 CRRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
LEIV++LL GAD+N+ + G T +I
Sbjct: 121 ADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + +D +PL + G EIV+ LL++ AD + + +
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADV-Y 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA L+I+++LLKY AD+NA D G H A + +IV LL G+++
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 35/170 (20%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ ++ G TPL
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPL----------------------------- 51
Query: 394 TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
H+A+ G+LE+V LLKH +++ D G+TPL + LE+ +++ GAD+
Sbjct: 52 ---HLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVN 107
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNN 501
A M G+T LHLA G+L +V L+K+ D+N+++ GKT +I N
Sbjct: 108 AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADIKAKLM 456
A++ G + V L+ + ++N D G TPL ++ G LE+ +++ GAD+ A +
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGH--LEIVEVLLKHGADVDAADV 78
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
G T LHLA G+L +V L+K+ D+N+ + G TP++ A HLEI +LLK GAD
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 516 VAVKMKSNFTCLHVACE 532
V + K T ++ +
Sbjct: 139 VNAQDKFGKTAFDISID 155
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHI 546
+DLGK + A E+ +L+ GADV + T LH+A +E+V LL H
Sbjct: 12 SDLGKKLLEAARAGQDDEV-RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 547 G-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMY--KNDSPLHLACATGNMDMIT 603
V+ D G TPLH A + LE+ L+ AD+ + +PLHLA G+++++
Sbjct: 71 ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVE 130
Query: 604 YAMKY-FDVNIENDIGETPLHVAVSHG 629
+KY DVN ++ G+T +++ +G
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G+D+ KL++ A G V L+ + D+N+ ++ G TP++ A + HLEI
Sbjct: 11 GSDLGKKLLEAARA-------GQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIV 63
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVG 565
+LLK GADV FT LH+A +E+V LL + VN D G TPLH A
Sbjct: 64 EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE 123
Query: 566 NQLEVFNHLINSNADI 581
LE+ L+ AD+
Sbjct: 124 GHLEIVEVLLKYGADV 139
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 40/172 (23%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A + D V IL+ ADVN D T TPL+ A + L+I+++L+K+GADV+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVS-GHLEIVEVLLKHGADVDAA 76
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+ Y TPLH A+ G +L++++ L
Sbjct: 77 D--VYGFTPLHLAAMTG-----------------------------------HLEIVEVL 99
Query: 775 LKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTAL 826
LK GAD + D+ ++PL + +G EIV+ LL+Y AD N + K G TA
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD-KFGKTAF 150
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN ++ G TPLH+A G LE V+ LL DV+ G T L A L++VE
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVE 97
Query: 670 ILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D T TPL+ A + L+I+++L+KYGADVN
Sbjct: 98 VLLKYGADVNAFDMTGSTPLHLA-ADEGHLEIVEVLLKYGADVN 140
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 574 LINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGC 630
LI + AD+ N +PLHLA +G+++++ +K+ DV+ + G TPLH+A G
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
LE V+ LL DVN GST L A + L++VE+LL+ ADVN D
Sbjct: 93 LEIVEVLLKY-GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ ++ + T L+ AA +L++++ LLKAGAD + D
Sbjct: 9 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
+PL + R+G EIV+ LL+ AD N + K G T LH AA L+I+++LLK AD
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFL 874
+NA+DK+GK F A N DI L
Sbjct: 127 VNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N +DKDG+TPL + + + LE+ +++AGAD+ AK D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKDKD 67
Query: 458 GTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LHLA G+L +V L+K D+N+++ G TP++ A + HLEI +LLK GADV
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T +A + + ++ L
Sbjct: 128 NAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ + DG TPL A + LE+ L+ G D++ + +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 394 -TALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
T LH+A++ G+LE+V LLK ++N +DKDG+TPL + + + LE+ +++AGAD+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADV 127
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVK 479
A+ G T LA GN + L K
Sbjct: 128 NAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 593 ACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKD 651
A G D + M DVN ++ G TPLH+A G LE V+ LL DVN K KD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKD 67
Query: 652 GSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGAD 710
G T L A + L++VE+LL+A ADVN D YTPL+ A ++ L+I+++L+K GAD
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA-AREGHLEIVEVLLKAGAD 126
Query: 711 VNLTNEACYYMTPLHYASYRGDCNDIARFL 740
VN ++ + TP A G+ DIA L
Sbjct: 127 VNAQDK--FGKTPFDLAIDNGN-EDIAEVL 153
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+++ G TP++ A + HLEI +LLK GADV K K +T LH+A +E+V
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 542 LL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGN 598
LL + VN +D G TPLH A LE+ L+ + AD+ +P LA GN
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGN 146
Query: 599 MDM 601
D+
Sbjct: 147 EDI 149
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
L +A D E V++L+ GA+ A +K T LH+AA ++IV++L GA+ VN
Sbjct: 7 LEAARAGQDDE-VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD--VN 62
Query: 322 VQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN 381
++ G TPLH+A R LEIV++LL GAD+N+ + DG TPL A + LE+ L+
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 382 HGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
G D++ + +T +A GN ++ L K
Sbjct: 123 AGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 616 DIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
D+G+ L A + G + V+ L+ DVN K KDG T L A + L++VE+LL+A
Sbjct: 1 DLGKKLLEAARA-GQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 676 ADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCN 734
ADVN D YTPL+ A ++ L+I+++L+K GADVN ++ Y TPLH A+ G
Sbjct: 59 ADVNAKDKDGYTPLHLA-AREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLE 115
Query: 735 DIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKA 777
+ L + AD+ ++ +T + A N D+ + L KA
Sbjct: 116 IVEVLL--KAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 488 DLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL-SHI 546
DLGK + A E+ +L+ GADV K K +T LH+A +E+V LL +
Sbjct: 1 DLGKKLLEAARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 547 GVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITY 604
VN +D G TPLH A LE+ L+ + AD+ D +PLHLA G+++++
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Query: 605 AMKY-FDVNIENDIGETPLHVAVSHG 629
+K DVN ++ G+TP +A+ +G
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLAIDNG 145
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + R+G EIV+ LL+ AD N + K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KD 67
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA L+I+++LLK AD+NA+DK G H A + + +IV LL AG+++
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 128 NAQDKFGKT 136
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N DK + TPLH A +E+V+
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDK-----------DGYTPLHLAAREGHLEIVE 52
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A +K T LH+AA ++IV++L GA+ VN ++ G TPLH+A
Sbjct: 53 VLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKDGYTPLHLAA 109
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
R LEIV++LL GAD+N+ + G TP AI
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ ++ + T L+ AA +L++++ LLKAGAD + D
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
+PL + R+G EIV+ LL+ AD N + K G T LH AA L+I+++LLK AD
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFL 874
+NA+DK+GK AF + N D+ L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 87/146 (59%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N +DKDG+TPL + + + LE+ +++AGAD+ AK D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKDKD 79
Query: 458 GTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LHLA G+L +V L+K D+N+++ G TP++ A + HLEI +LLK GADV
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN ++ G TPLH+A G LE V+ LL DVN K KDG T L A + L++VE
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVE 97
Query: 670 ILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+A ADVN D YTPL+ A ++ L+I+++L+K GADVN
Sbjct: 98 VLLKAGADVNAKDKDGYTPLHLA-AREGHLEIVEVLLKAGADVN 140
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 5/151 (3%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
L +A D E V++L+ GA+ A +K T LH+AA ++IV++L GA+ VN
Sbjct: 19 LEAARAGQDDE-VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD--VN 74
Query: 322 VQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN 381
++ G TPLH+A R LEIV++LL GAD+N+ + DG TPL A + LE+ L+
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 382 HGCDLSVPEG-ERTALHMASQFGNLEMVNYL 411
G D++ + +TA ++ GN ++ L
Sbjct: 135 AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 8/161 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN K KDG T L A + L++VE+LL+A
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 675 NADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D YTPL+ A ++ L+I+++L+K GADVN ++ Y TPLH A+ G
Sbjct: 70 GADVNAKDKDGYTPLHLA-AREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+ L + AD+ ++ +TA + + N DL + L
Sbjct: 127 EIVEVLL--KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + R+G EIV+ LL+ AD N + K
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KD 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA L+I+++LLK AD+NA+DK G H A + + +IV LL AG+++
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+++ G TP++ A + HLEI +LLK GADV K K +T LH+A +E+V
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 542 LL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LL + VN +D G TPLH A LE+ L+ + AD+
Sbjct: 99 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYA 605
VN +D G TPLH A LE+ L+ + AD+ D +PLHLA G+++++
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K DVN ++ G TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEIL 671
DL EIL
Sbjct: 159 EDLAEIL 165
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N DK + TPLH A +E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDK-----------DGYTPLHLAAREGHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A +K T LH+AA ++IV++L GA+ VN ++ G TPLH+A
Sbjct: 65 VLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKDGYTPLHLAA 121
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
R LEIV++LL GAD+N+ + G T +I
Sbjct: 122 REGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 154
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ ++ + T L+ AA +L++++ LLKAGAD + D
Sbjct: 9 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
+PL + R+G EIV+ LL+ AD N + K G T LH AA L+I+++LLK AD
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFL 874
+NA+DK+GK F A + + DI L
Sbjct: 127 VNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N +DKDG+TPL + + + LE+ +++AGAD+ AK D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKDKD 67
Query: 458 GTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LHLA G+L +V L+K D+N+++ G TP++ A + HLEI +LLK GADV
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T +A ++ L
Sbjct: 128 NAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 35/180 (19%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ + DG TPL A + LE+ L+ G D++ + +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 394 -TALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
T LH+A++ G+LE+V LLK ++N +DKDG+TPL + + + LE+ +++AGAD
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGAD- 126
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
+N+++ GKTP AI+ H +I +L K
Sbjct: 127 -------------------------------VNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+++ G TP++ A + HLEI +LLK GADV K K +T LH+A +E+V
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 542 LL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGN 598
LL + VN +D G TPLH A LE+ L+ + AD+ +P LA G+
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGH 146
Query: 599 MDM 601
D+
Sbjct: 147 EDI 149
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + R+G EIV+ LL+ AD N + K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KD 67
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA L+I+++LLK AD+NA+DK G H A + + +IV LL AG+++
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 882 EKATKYRMTFESSKVVEKH 900
K+ T + E H
Sbjct: 128 NAQDKFGKTPFDLAIREGH 146
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 488 DLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL-SHI 546
DLGK + A E+ +L+ GADV K K +T LH+A +E+V LL +
Sbjct: 1 DLGKKLLEAARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 547 GVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITY 604
VN +D G TPLH A LE+ L+ + AD+ D +PLHLA G+++++
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Query: 605 AMKY-FDVNIENDIGETPLHVAVSHG 629
+K DVN ++ G+TP +A+ G
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLAIREG 145
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 5/153 (3%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
L +A D E V++L+ GA+ A +K T LH+AA ++IV++L GA+ VN
Sbjct: 7 LEAARAGQDDE-VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD--VN 62
Query: 322 VQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN 381
++ G TPLH+A R LEIV++LL GAD+N+ + DG TPL A + LE+ L+
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 382 HGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
G D++ + +T +A + G+ ++ L K
Sbjct: 123 AGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 5/155 (3%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDV 611
G L A G EV L+ + AD+ D +PLHLA G+++++ +K DV
Sbjct: 3 GKKLLEAARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N ++ G TPLH+A G LE V+ LL DVN K KDG T L A + L++VE+L
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 672 LEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVK 706
L+A ADVN D + +++ DI ++L K
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 14/164 (8%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N DK + TPLH A +E+V+
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDK-----------DGYTPLHLAAREGHLEIVE 52
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A +K T LH+AA ++IV++L GA+ VN ++ G TPLH+A
Sbjct: 53 VLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKDGYTPLHLAA 109
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
R LEIV++LL GAD+N+ + G TP AI + ++ L
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYA 605
VN +D G TPLH A LE+ L+ + AD+ D +PLHLA G+++++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K DVN ++ G TPLH+A G LE V+ LL DVN + K G T A +
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIREGH 146
Query: 665 LDLVEILLEA 674
D+ E+L +A
Sbjct: 147 EDIAEVLQKA 156
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 90/163 (55%), Gaps = 11/163 (6%)
Query: 252 SRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLL 311
+R+IE A N + + VK L+E GA+ A + S RT LH AA ++VKLL
Sbjct: 5 GKRLIE-------AAENGNKDRVKDLIENGADVNASD-SDGRTPLHHAAENGHKEVVKLL 56
Query: 312 FDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
GA+ VN ++ G TPLH A E+VK+L+ KGAD+N+ + DG TPL A
Sbjct: 57 ISKGAD--VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG 114
Query: 372 CLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLK 413
EV L++ G D++ + + RT L +A + GN E+V L K
Sbjct: 115 HKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + D K L++ G +N D + TPLH A N E+VK
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDS-----------DGRTPLHHAAENGHKEVVK 54
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
LL+ KGA+ + + S RT LH AA ++VKLL GA+ VN ++ G TPLH A
Sbjct: 55 LLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD--VNAKDSDGRTPLHHAA 111
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGC 384
E+VK+L+ KGAD+N+ + DG TPL A EV L G
Sbjct: 112 ENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNH 502
+IE GAD+ A DG T LH A G+ +V L+ K D+N+++ G+TP++ A +N H
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHC 561
E+ LL+ GADV K T LH A E E+V L+S VN D+ G TPL
Sbjct: 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL 142
Query: 562 A 562
A
Sbjct: 143 A 143
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ GN + V L+++ ++N D DG TPL + + EV +I GAD+ AK D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAE-NGHKEVVKLLISKGADVNAKDSD 69
Query: 458 GTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LH A G+ +V L+ K D+N+++ G+TP++ A +N H E+ LL+ GADV
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSHIG 547
T L +A E + E+V L G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQ 401
VK L++ GAD+N+ + DG TPL A EV L++ G D++ + + RT LH A++
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE 79
Query: 402 FGNLEMVNYLL-KHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTT 460
G+ E+V L+ K ++N +D DG TPL + + EV +I GAD+ DG T
Sbjct: 80 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE-NGHKEVVKLLISKGADVNTSDSDGRT 138
Query: 461 ALHLACYFGNLAMVNYLVK 479
L LA GN +V L K
Sbjct: 139 PLDLAREHGNEEVVKLLEK 157
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
++LGK I A N + +L+ + GADV T LH A E E+V L+S
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMIT 603
VN +D+ G TPLH A EV LI+ AD+ +D +PLH A G+ +++
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 120
Query: 604 YAM-KYFDVNIENDIGETPLHVAVSHGCLEAVKFL 637
+ K DVN + G TPL +A HG E VK L
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 379 LVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLL-KHININHQDKDGWTPLTCSIKGQA 436
L+ +G D++ + + RT LH A++ G+ E+V L+ K ++N +D DG TPL + +
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE-NG 81
Query: 437 SLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIY 495
EV +I GAD+ AK DG T LH A G+ +V L+ K D+N+ + G+TP+
Sbjct: 82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD 141
Query: 496 FAIKNNHLEIFNLLLKLGA 514
A ++ + E+ LL K G
Sbjct: 142 LAREHGNEEVVKLLEKQGG 160
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
Query: 593 ACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKD 651
A GN D + ++ DVN + G TPLH A +G E VK L+ +K DVN K D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSD 69
Query: 652 GSTALFFACYDKRLDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGAD 710
G T L A + ++V++L+ ADVN D TPL+ A ++ +++K+L+ GAD
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA-AENGHKEVVKLLISKGAD 128
Query: 711 VNLTNEACYYMTPLHYASYRGD 732
VN ++ TPL A G+
Sbjct: 129 VNTSD--SDGRTPLDLAREHGN 148
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 7/159 (4%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAM-KYFDV 611
G + A GN+ V + LI + AD+ +D +PLH A G+ +++ + K DV
Sbjct: 5 GKRLIEAAENGNKDRVKD-LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N ++ G TPLH A +G E VK L+ +K DVN K DG T L A + ++V++L
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 672 LEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGA 709
+ ADVN D TPL A + + +++K+L K G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLA-REHGNEEVVKLLEKQGG 160
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
Query: 743 ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYE 802
E AD+ + + RT L+ AA + +++K L+ GAD + D +PL + G E
Sbjct: 25 ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84
Query: 803 IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
+V L+ AD N + G T LH AA + +++KLL+ AD+N D G+ A
Sbjct: 85 VVKLLISKGADVNAKDSD-GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA 143
Query: 863 CQAKNWDIVTFLLDAGSNIE 882
+ N ++V L G +E
Sbjct: 144 REHGNEEVVKLLEKQGGWLE 163
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA N D +K L++ GAD + D +PL + G E+V L+ AD N +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD- 69
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA + +++KLL+ AD+NA+D G+ H A + + ++V L+ G+++
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 210 SHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNS 269
S S G L A + ++ KLL+ KG +N D + TPLH A N
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-----------DGRTPLHHAAENG 81
Query: 270 DIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLT 329
E+VKLL+ KGA+ + + S RT LH AA ++VKLL GA+ VN + G T
Sbjct: 82 HKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD--VNTSDSDGRT 138
Query: 330 PLHIACRRKCLEIVKILLDKGA 351
PL +A E+VK+L +G
Sbjct: 139 PLDLAREHGNEEVVKLLEKQGG 160
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
L+ + G + V L+E AD N + G T LH AA + +++KLL+ AD+NA+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
D G+ H A + + ++V L+ G+++
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADV 96
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
R +D R L+ AD+ R+F T L+ AA +L++++ LLK GAD + D
Sbjct: 23 RAGQDDEVRILMAN-GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV 81
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + R+G EIV+ LL+ AD N + HG T LH AA L+I+++LLK AD+N
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFL 874
A+DK+GK AF + N D+ L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
++ GAD+ A+ G T LHLA +FG+L +V L+K+ D+N+++ LG TP++ A + H
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH 92
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHC 561
LEI +LLK GADV FT LH+A + +E+V LL + VN QD G T
Sbjct: 93 LEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 562 AI 563
+I
Sbjct: 153 SI 154
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
L +A D E V++L+ GA+ A + + T LH+AA ++IV++L GA+ VN
Sbjct: 19 LEAARAGQDDE-VRILMANGADVNARDFT-GWTPLHLAAHFGHLEIVEVLLKNGAD--VN 74
Query: 322 VQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN 381
++ G+TPLH+A RR LEIV++LL GAD+N+ + G TPL A + LE+ L+
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 382 HGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
+G D++ + +TA ++ GN ++ L K
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N +D GWTPL + LE+ +++ GAD+ AK
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHF-GHLEIVEVLLKNGADVNAKDSL 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LHLA G+L +V L+K+ D+N+ + G TP++ A K HLEI +LLK GADV
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 35/172 (20%)
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQF 402
V+IL+ GAD+N+ + G TPL H+A+ F
Sbjct: 30 VRILMANGADVNARDFTGWTPL--------------------------------HLAAHF 57
Query: 403 GNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTA 461
G+LE+V LLK+ ++N +D G TPL + + + LE+ +++ GAD+ A G T
Sbjct: 58 GHLEIVEVLLKNGADVNAKDSLGVTPLHLAAR-RGHLEIVEVLLKNGADVNASDSHGFTP 116
Query: 462 LHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
LHLA G+L +V L+K+ D+N+++ GKT +I N + ++ +L KL
Sbjct: 117 LHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + G EIV+ LL+ AD N +
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD-SL 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA L+I+++LLK AD+NA D +G H A + + +IV LL G+++
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 69.7 bits (169), Expect = 8e-12, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
+DLGK + A E+ +L+ GADV + + +T LH+A F +E+V LL +
Sbjct: 12 SDLGKKLLEAARAGQDDEV-RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMIT 603
VN +D+ G TPLH A LE+ L+ + AD+ + +PLHLA G+++++
Sbjct: 71 ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 604 YAMKY-FDVNIENDIGETPLHVAVSHG 629
+K DVN ++ G+T +++ +G
Sbjct: 131 VLLKNGADVNAQDKFGKTAFDISIDNG 157
Score = 69.3 bits (168), Expect = 9e-12, Method: Composition-based stats.
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A +E+V++LL+ GA+ A + S T LH+AA ++IV++L GA+
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNA-KDSLGVTPLHLAARRGHLEIVEVLLKNGAD-- 105
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCT 362
VN + G TPLH+A +R LEIV++LL GAD+N+ + G T
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKT 148
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKN--DSPLHLACATGNMDMITYA 605
VN +D G TPLH A LE+ L+ + AD+ + +PLHLA G+++++
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K DVN + G TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN + G T L A + L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKN 69
Query: 675 NADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D TPL+ A + L+I+++L+K GADVN ++ + TPLH A+ RG
Sbjct: 70 GADVNAKDSLGVTPLHLAARRG-HLEIVEVLLKNGADVNASDSHGF--TPLHLAAKRGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
+I L++ AD+ ++ +TA + + N DL + L K
Sbjct: 127 -EIVEVLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 574 LINSNADITM--YKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGC 630
L+ + AD+ + +PLHLA G+++++ +K DVN ++ +G TPLH+A G
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH 92
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
LE V+ LL DVN G T L A L++VE+LL+ ADVN D
Sbjct: 93 LEIVEVLLKN-GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD 143
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 666 DLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPL 724
D V IL+ ADVN D T +TPL+ A L+I+++L+K GADVN + +TPL
Sbjct: 28 DEVRILMANGADVNARDFTGWTPLHLA-AHFGHLEIVEVLLKNGADVNAKDSLG--VTPL 84
Query: 725 HYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDIL 784
H A+ RG +I L++ AD+ + + T L+ AA +L++++ LLK GAD +
Sbjct: 85 HLAARRGHL-EIVEVLLKN-GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ 142
Query: 785 D 785
D
Sbjct: 143 D 143
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN + +GLTPLH+A LEIV++LL GAD+N+ + G TPL
Sbjct: 28 DEVRILMANGAD--VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLH 85
Query: 366 CAIAQNCLEVFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKD 423
A LE+ L+ HG D+ +V T LH+A+ G+LE+V LLKH ++N QDK
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF 145
Query: 424 GWTPLTCSI 432
G T SI
Sbjct: 146 GKTAFDISI 154
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + + T L+ AA +L++++ LLK GAD + +D+
Sbjct: 21 AARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
++PL + G EIV+ LL++ AD N G T LH AA L+I+++LLK+ AD
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFL 874
+NA+DK+GK AF + N D+ L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 37/182 (20%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ + G TPL
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPL----------------------------- 51
Query: 394 TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADI 451
H+A+ +G+LE+V LLKH ++N D G TPL ++ G LE+ +++ GAD+
Sbjct: 52 ---HLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGH--LEIVEVLLKHGADV 106
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
A G T LHLA G+L +V L+KH D+N+++ GKT +I N + ++ +L
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 511 KL 512
KL
Sbjct: 167 KL 168
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + G EIV+ LL++ AD N I
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX- 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
GST LH AA L+I+++LLK+ AD+NA D +G H A + +IV LL G+++
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHI 546
+DLGK + A E+ +L+ GADV S T LH+A + +E+V LL H
Sbjct: 12 SDLGKKLLEAARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 547 G-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMIT 603
VN D G TPLH A + LE+ L+ AD+ D+PLHLA G+++++
Sbjct: 71 ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 604 YAMKY-FDVNIENDIGETPLHVAVSHG 629
+K+ DVN ++ G+T +++ +G
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D G TPL + LE+ +++ GAD+ A +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAIDIX 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G+T LHLA G+L +V L+KH D+N+ + G TP++ A HLEI +LLK GADV
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMY--KNDSPLHLACATGNMDMITYA 605
VN D G TPLH A LE+ L+ AD+ +PLHLA G+++++
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K+ DVN + G+TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N D TPLH A +E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDA-----------SGLTPLHLAATYGHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ AI+ T LH+AA++ ++IV++L +GA+ VN + G TPLH+A
Sbjct: 65 VLLKHGADVNAIDIX-GSTPLHLAALIGHLEIVEVLLKHGAD--VNAVDTWGDTPLHLAA 121
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
LEIV++LL GAD+N+ + G T +I
Sbjct: 122 IMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN + G TPLH+A ++G LE V+ LL DVN GST L A L++VE
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIXGSTPLHLAALIGHLEIVE 97
Query: 670 ILLEANADVNLGDGTY--TPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D T+ TPL+ A + L+I+++L+K+GADVN
Sbjct: 98 VLLKHGADVNAVD-TWGDTPLHLAAIM-GHLEIVEVLLKHGADVN 140
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+ + G TP++ A HLEI +LLK GADV T LH+A +E+V
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEV 98
Query: 542 LLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LL H VN D G TPLH A + LE+ L+ AD+
Sbjct: 99 LLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN G T L A L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 675 NADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D TPL+ A + L+I+++L+K+GADVN + + TPLH A+ G
Sbjct: 70 GADVNAIDIXGSTPLHLAALI-GHLEIVEVLLKHGADVNAVD--TWGDTPLHLAAIMGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
+I L++ AD+ ++ +TA + + N DL + L K
Sbjct: 127 -EIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A + D V IL+ ADVN D + TPL+ A L+I+++L+K+GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATY-GHLEIVEVLLKHGADVNAI 76
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+ TPLH A+ G +I L++ AD+ + T L+ AA +L++++ L
Sbjct: 77 D--IXGSTPLHLAALIGHL-EIVEVLLKH-GADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 775 LKAGAD 780
LK GAD
Sbjct: 133 LKHGAD 138
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 212 SQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDI 271
+ G L A +I ++L+ G +N +D I TPLH A L +
Sbjct: 45 ASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-----------IXGSTPLHLAALIGHL 93
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
E+V++LL+ GA+ A++ + T LH+AAI+ ++IV++L +GA+ VN Q+ G T
Sbjct: 94 EIVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLLKHGAD--VNAQDKFGKTAF 150
Query: 332 HIACRRKCLEIVKIL 346
I+ ++ +IL
Sbjct: 151 DISIDNGNEDLAEIL 165
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 116/216 (53%), Gaps = 11/216 (5%)
Query: 390 EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAG 448
+ +R+ LH A++ G++++ + L++ NI+ +D TPL + + LE +I+AG
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN-HLEAVKYLIKAG 67
Query: 449 ADIKAKLMDGTTALHLACYFGNLAMVNYLVK--HIDINSENDLGKTPIYFAIKNNHLEIF 506
A + K +G+T LHLA G+ +V YL+ +D+N ++D G TP+ +A + H+++
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHI----GVNLQDNKGCTPLHCA 562
LLL G+D+ ++ CLH A +++ LL+ VN+ G +PLH A
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH---GDSPLHIA 184
Query: 563 IVGNQLEVFNHLINSNADITMYKNDSPLHLACATGN 598
N+ + ++ ++D+T+ + L CA+ N
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 114/215 (53%), Gaps = 13/215 (6%)
Query: 460 TALHLACYFGNLAMVNYLVK---HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
+ LH A G++ + + LV+ +ID SE+ +TP+ A +NNHLE L+K GA V
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLS--HIGVNLQDNKGCTPLHCAIVGNQLEVFNHL 574
K TCLH+A + E+V +LLS + VN QD+ G TP+ A +++ L
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 575 INSNADITMYKNDSP--LHLACATGNMDM--ITYAMKYFDVNIENDIGETPLHVAVSHGC 630
++ +DI + N+ LH A +G +D+ I A K D++ N G++PLH+A
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAARENR 189
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRL 665
+ V L +++ DV K K+G T L A + ++
Sbjct: 190 YDCVVLFL-SRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 11/229 (4%)
Query: 545 HIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMI 602
H+ ++ +PLH A +++ + L+ + A+I D +PL A +++ +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 603 TYAMKYFD-VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACY 661
Y +K V+ ++ G T LH+A G E V++LL+ +DVN + G T + +A
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 662 DKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYM 721
K +DLV++LL +D+N+ D +DI ++L+ D++ N +
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN--IHGD 178
Query: 722 TPLHYASY--RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNL 768
+PLH A+ R DC + FL + +D+TL+N T L A+ + +
Sbjct: 179 SPLHIAARENRYDC--VVLFLSRD--SDVTLKNKEGETPLQCASLNSQV 223
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 47/253 (18%)
Query: 588 SPLHLACATGNMD---MITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNID 644
SPLH A G++D M+ A D E+ TPL A + LEAVK+L+ +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLEAVKYLIKAGAL- 69
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLE-ANADVNL-GDGTYTPLYTALMKDPSLDIIK 702
V+ K +GST L A ++V+ LL DVN DG +TP+ A + +D++K
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA-TEYKHVDLVK 128
Query: 703 MLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFA 762
+L+ G+D+N+ R+ L++A
Sbjct: 129 LLLSKGSDINI-------------------------------------RDNEENICLHWA 151
Query: 763 AFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHG 822
AF +D+ + LL A D +++ SPL + R+ Y+ V L ++D L+ K G
Sbjct: 152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN-KEG 210
Query: 823 STALHTAAFHNQL 835
T L A+ ++Q+
Sbjct: 211 ETPLQCASLNSQV 223
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 19/227 (8%)
Query: 209 LSHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILN 268
+ H L A + DI +LV G ++ + + TPL A N
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-----------DQRTPLMEAAEN 54
Query: 269 SDIELVKLLLEKGA--NPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVA 326
+ +E VK L++ GA +P E S T LH+AA ++V+ L G + VN Q+
Sbjct: 55 NHLEAVKYLIKAGALVDPKDAEGS---TCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDG 110
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G TP+ A K +++VK+LL KG+DIN +++ L A C+++ L+ CDL
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 387 -SVPEGERTALHMASQFGNLE-MVNYLLKHININHQDKDGWTPLTCS 431
+V + LH+A++ + +V +L + ++ ++K+G TPL C+
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 8/222 (3%)
Query: 642 NIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN-LGDGTYTPLYTALMKDPSLDI 700
N + H+ K + L A +D+ +L++A A+++ + TPL A ++ L+
Sbjct: 3 NFKMEHQNK--RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEA-AENNHLEA 59
Query: 701 IKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALN 760
+K L+K GA V+ + T LH A+ +G ++ ++L+ D+ ++ T +
Sbjct: 60 VKYLIKAGALVDPKDAE--GSTCLHLAAKKGH-YEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 761 FAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIK 820
+A ++DL+K LL G+D +I D ++ L + G +I + LL D + I
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI- 175
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
HG + LH AA N+ D + L L ++D+ ++K G+ A
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 41/254 (16%)
Query: 480 HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMV 539
H++ E+ ++P++ A + H++I ++L++ GA++ + T L A E +E V
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 540 SFLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGN 598
+L+ V+ +D +G T LH A EV +L+ + G
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL-------------------SNGQ 101
Query: 599 MDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFF 658
M DVN ++D G TP+ A + ++ VK LL +K D+N + + + L +
Sbjct: 102 M----------DVNCQDDGGWTPMIWATEYKHVDLVKLLL-SKGSDINIRDNEENICLHW 150
Query: 659 ACYDKRLDLVEILLEANAD---VNL-GDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
A + +D+ EILL A D VN+ GD +PL+ A ++ D + + + +DV L
Sbjct: 151 AAFSGCVDIAEILLAAKCDLHAVNIHGD---SPLHIA-ARENRYDCVVLFLSRDSDVTLK 206
Query: 715 NEACYYMTPLHYAS 728
N+ TPL AS
Sbjct: 207 NKE--GETPLQCAS 218
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
+PLH A+ G DI LV+ A+I + + RT L AA N+L+ +K+L+KAGA
Sbjct: 13 SPLHAAAEAGHV-DICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNA-DTNLRTIKHGSTALHTAAFHNQLDIIKL 840
D D + ++ L + ++G YE+V LL D N + G T + A + +D++KL
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD-DGGWTPMIWATEYKHVDLVKL 129
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
LL +DIN D I H A + DI LL A ++
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 39/258 (15%)
Query: 249 LNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIV 308
+N+ +PLH+A +++ +L++ GAN + + RT L AA ++ V
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAV 60
Query: 309 KLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA-DINSGNDDGCTPLFCA 367
K L GA V+ ++ G T LH+A ++ E+V+ LL G D+N +D G TP+ A
Sbjct: 61 KYLIKAGA--LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 368 IAQNCLEVFNYLVNHGCDLSVPEGERT-ALHMASQFGNLEMVNYLLKHININHQDKDGWT 426
+++ L++ G D+++ + E LH A+ G +++ LL
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA------------- 165
Query: 427 PLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNL-AMVNYLVKHIDINS 485
A D+ A + G + LH+A +V +L + D+
Sbjct: 166 --------------------AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL 205
Query: 486 ENDLGKTPIYFAIKNNHL 503
+N G+TP+ A N+ +
Sbjct: 206 KNKEGETPLQCASLNSQV 223
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN + +GLTPLH+A LEIV++LL GAD+N+ + G TPL
Sbjct: 28 DEVRILMANGAD--VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLH 85
Query: 366 CAIAQNCLEVFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKD 423
A LE+ L+ HG D+ +V T LH+A+ G+LE+V LLKH ++N QDK
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF 145
Query: 424 GWTPLTCSI 432
G T SI
Sbjct: 146 GKTAFDISI 154
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + + T L+ AA +L++++ LLK GAD + +D+
Sbjct: 21 AARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
++PL + G EIV+ LL++ AD N G T LH AA L+I+++LLK+ AD
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFL 874
+NA+DK+GK AF + N D+ L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD+ A G T LHLA +G+L +V L+KH D+N+ + +G TP++ A HLEI
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIV 96
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAI 563
+LLK GADV T LH+A +E+V LL H VN QD G T +I
Sbjct: 97 EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + G EIV+ LL++ AD N I
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM- 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
GST LH AA L+I+++LLK+ AD+NA D +G H A + +IV LL G+++
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 37/182 (20%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ + G TPL
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPL----------------------------- 51
Query: 394 TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADI 451
H+A+ +G+LE+V LLKH ++N D G TPL ++ G LE+ +++ GAD+
Sbjct: 52 ---HLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGH--LEIVEVLLKHGADV 106
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
A G T LHLA G+L +V L+KH D+N+++ GKT +I N + ++ +L
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 511 KL 512
KL
Sbjct: 167 KL 168
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHI 546
+DLGK + A E+ +L+ GADV S T LH+A + +E+V LL H
Sbjct: 12 SDLGKKLLEAARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 547 G-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMIT 603
VN D G TPLH A + LE+ L+ AD+ D+PLHLA G+++++
Sbjct: 71 ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 604 YAMKY-FDVNIENDIGETPLHVAVSHG 629
+K+ DVN ++ G+T +++ +G
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMITYA 605
VN D G TPLH A LE+ L+ AD+ +PLHLA G+++++
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K+ DVN + G+TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D G TPL + LE+ +++ GAD+ A +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAIDIM 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G+T LHLA G+L +V L+KH D+N+ + G TP++ A HLEI +LLK GADV
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N D TPLH A +E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDA-----------SGLTPLHLAATYGHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ AI+ T LH+AA++ ++IV++L +GA+ VN + G TPLH+A
Sbjct: 65 VLLKHGADVNAID-IMGSTPLHLAALIGHLEIVEVLLKHGAD--VNAVDTWGDTPLHLAA 121
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
LEIV++LL GAD+N+ + G T +I
Sbjct: 122 IMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN + G TPLH+A ++G LE V+ LL DVN GST L A L++VE
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIMGSTPLHLAALIGHLEIVE 97
Query: 670 ILLEANADVNLGDGTY--TPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D T+ TPL+ A + L+I+++L+K+GADVN
Sbjct: 98 VLLKHGADVNAVD-TWGDTPLHLAAIM-GHLEIVEVLLKHGADVN 140
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN G T L A L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 675 NADVNLGD--GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGD 732
ADVN D G+ TPL+ A + L+I+++L+K+GADVN + + TPLH A+ G
Sbjct: 70 GADVNAIDIMGS-TPLHLAALI-GHLEIVEVLLKHGADVNAVD--TWGDTPLHLAAIMGH 125
Query: 733 CNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
+I L++ AD+ ++ +TA + + N DL + L K
Sbjct: 126 L-EIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A + D V IL+ ADVN D + TPL+ A L+I+++L+K+GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATY-GHLEIVEVLLKHGADVNAI 76
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+ TPLH A+ G +I L++ AD+ + T L+ AA +L++++ L
Sbjct: 77 D--IMGSTPLHLAALIGHL-EIVEVLLKH-GADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 775 LKAGAD 780
LK GAD
Sbjct: 133 LKHGAD 138
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 212 SQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDI 271
+ G L A +I ++L+ G +N +D I TPLH A L +
Sbjct: 45 ASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-----------IMGSTPLHLAALIGHL 93
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
E+V++LL+ GA+ A++ + T LH+AAI+ ++IV++L +GA+ VN Q+ G T
Sbjct: 94 EIVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLLKHGAD--VNAQDKFGKTAF 150
Query: 332 HIACRRKCLEIVKIL 346
I+ ++ +IL
Sbjct: 151 DISIDNGNEDLAEIL 165
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 100/185 (54%), Gaps = 7/185 (3%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
+RTALH A +IV+ L G VN ++ AG +PLHIA EIVK LL KGA
Sbjct: 41 SRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 352 DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNY 410
+N+ N +GCTPL A ++N E+ L+ G + + E TA+H A+ GNL+M++
Sbjct: 99 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 158
Query: 411 LLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFG 469
LL + + N QD +G TPL + + +E ++ GA I + + T L +A G
Sbjct: 159 LLYYKASTNIQDTEGNTPLHLACD-EERVEEAKLLVSQGASIYIENKEEKTPLQVA--KG 215
Query: 470 NLAMV 474
L ++
Sbjct: 216 GLGLI 220
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 393 RTALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RTALH A G+ E+V +LL+ + +N +D GW+PL
Sbjct: 42 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL----------------------- 78
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
H+A G +V L+ K +N+ N G TP+++A N EI +LL
Sbjct: 79 -----------HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 127
Query: 511 KLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLE 569
+ GA+ K T +H A +++M+ LL + N+QD +G TPLH A ++E
Sbjct: 128 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 187
Query: 570 VFNHLINSNADITMYKNDSPLHLACATGNMDMITYAM 606
L++ A I + + L A G + +I M
Sbjct: 188 EAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRM 224
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 4/153 (2%)
Query: 491 KTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG-VN 549
+T +++A H EI LL+LG V K + ++ LH+A E+V LL VN
Sbjct: 42 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 550 LQDNKGCTPLHCAIVGNQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMK 607
+ GCTPLH A N+ E+ L+ +N D + + +H A A GN+ MI +
Sbjct: 102 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY 161
Query: 608 Y-FDVNIENDIGETPLHVAVSHGCLEAVKFLLN 639
Y NI++ G TPLH+A +E K L++
Sbjct: 162 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 217 ALCWALQEKKTDIAKLLVDKGVPLN------------------------LVDKGVPLNYS 252
AL WA T+I + L+ GVP+N L+ KG +N
Sbjct: 44 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 253 RRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLF 312
+ TPLH A + E+ +LLE GANP A + TA+H AA ++ ++ +L
Sbjct: 104 NQ--NGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEATAMHRAAAKGNLKMIHILL 160
Query: 313 DYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCA 367
Y A S N+Q+ G TPLH+AC + +E K+L+ +GA I N + TPL A
Sbjct: 161 YYKA--STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 8/189 (4%)
Query: 588 SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+ LH AC+ G+ +++ + ++ VN ++D G +PLH+A S G E VK LL K VN
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVN 101
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLV 705
++G T L +A R ++ +LLE A+ + D T ++ A K +L +I +L+
Sbjct: 102 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG-NLKMIHILL 160
Query: 706 KYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFG 765
Y A N+ + TPLH A + A+ LV + A I + N +T L A G
Sbjct: 161 YYKASTNIQDTEGN--TPLHLACDEERVEE-AKLLVSQ-GASIYIENKEEKTPLQVAKGG 216
Query: 766 NNLDLLKFL 774
L L + +
Sbjct: 217 LGLILKRMV 225
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 42/215 (19%)
Query: 650 KDGSTALFFACYDKRLDLVEILLEANADVN-LGDGTYTPLYTALMKDPSLDIIKMLVKYG 708
+D TAL +AC ++VE LL+ VN D ++PL+ A +I+K L+ G
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD-EIVKALLGKG 97
Query: 709 ADVNLTNE-ACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNN 767
A VN N+ C TPLHYA+ + N
Sbjct: 98 AQVNAVNQNGC---TPLHYAASK-----------------------------------NR 119
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
++ LL+ GA+PD D + + + + +G +++ LL Y A TN++ + G+T LH
Sbjct: 120 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE-GNTPLH 178
Query: 828 TAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
A +++ KLL+ A I E+K K A
Sbjct: 179 LACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 749 TLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLL 808
T + ++RTAL++A + ++++FLL+ G + D SPL + G EIV LL
Sbjct: 35 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 809 EYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNW 868
A N ++G T LH AA N+ +I +LL+ A+ +A+D Y A H A N
Sbjct: 95 GKGAQVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 153
Query: 869 DIVTFLL--DAGSNI---EKATKYRMTFESSKVVEKHVAKLRAANIYVD 912
++ LL A +NI E T + + +V E + + A+IY++
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 202
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
T LH+A G +I FL++ + ++ + L+ AA +++K LL GA
Sbjct: 43 TALHWACSAGH-TEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 100
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
+ ++ +PL + + +EI LLE A+ + + + +TA+H AA L +I +L
Sbjct: 101 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD-HYEATAMHRAAAKGNLKMIHIL 159
Query: 842 LKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
L Y A N +D G H AC + + L+ G++I
Sbjct: 160 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
R +D R L+ AD + RT L+ AA +L++++ LL+ GAD + +D T
Sbjct: 11 RAGQDDEVRILMAN-GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + G EIV+ LL+Y AD N + G T L+ AA+ L+I+++LLK+ AD+N
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKDAT-GITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFL 874
A+DK+GK AF + N D+ L
Sbjct: 129 AQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A + RT LH+AA V ++IV++L GA+ VN + G TPLH+
Sbjct: 18 VRILMANGADANAYDH-YGRTPLHMAAAVGHLEIVEVLLRNGAD--VNAVDTNGTTPLHL 74
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A LEIV++LL GAD+N+ + G TPL+ A LE+ L+ HG D++ +
Sbjct: 75 AASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFG 134
Query: 393 RTALHMASQFGNLEMVNYL 411
+TA ++ GN ++ L
Sbjct: 135 KTAFDISIDIGNEDLAEIL 153
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G N D +Y R TPLH A +E+V+
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADANAYD-----HYGR------TPLHMAAAVGHLEIVE 52
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL GA+ A++ + T LH+AA + ++IV++L YGA+ VN ++ G+TPL++A
Sbjct: 53 VLLRNGADVNAVD-TNGTTPLHLAASLGHLEIVEVLLKYGAD--VNAKDATGITPLYLAA 109
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
LEIV++LL GAD+N+ + G T +I
Sbjct: 110 YWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 142
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RT LHMA+ G+LE+V LL++ ++N D +G TPL + LE+ +++ GAD+
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAAS-LGHLEIVEVLLKYGADV 94
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAI 498
AK G T L+LA Y+G+L +V L+KH D+N+++ GKT +I
Sbjct: 95 NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 142
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD A G T LH+A G+L +V L+++ D+N+ + G TP++ A HLEI
Sbjct: 25 GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIV 84
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAI-V 564
+LLK GADV K + T L++A + +E+V LL H VN QD G T +I +
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDI 144
Query: 565 GNQ 567
GN+
Sbjct: 145 GNE 147
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + + N D G TPL + LE+ ++ GAD+ A +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMA-AAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
GTT LHLA G+L +V L+K+ D+N+++ G TP+Y A HLEI +LLK GADV
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 574 LINSNADITMYKN--DSPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGC 630
L+ + AD Y + +PLH+A A G+++++ ++ DVN + G TPLH+A S G
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH 80
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
LE V+ LL DVN K G T L+ A Y L++VE+LL+ ADVN D
Sbjct: 81 LEIVEVLLKY-GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQD 131
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
D N + G TPLH+A + G LE V+ LL DVN +G+T L A L++VE
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTNGTTPLHLAASLGHLEIVE 85
Query: 670 ILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D T TPLY A L+I+++L+K+GADVN
Sbjct: 86 VLLKYGADVNAKDATGITPLYLAAYW-GHLEIVEVLLKHGADVN 128
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAM 606
N D+ G TPLH A LE+ L+ + AD+ + +PLHLA + G+++++ +
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 607 KY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRL 665
KY DVN ++ G TPL++A G LE V+ LL DVN + K G TA +
Sbjct: 89 KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDIGNE 147
Query: 666 DLVEIL 671
DL EIL
Sbjct: 148 DLAEIL 153
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + G EIV+ LL AD N +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTN 67
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G+T LH AA L+I+++LLKY AD+NA+D G + A + +IV LL G+++
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 128 NAQDKFGKT 136
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 100/185 (54%), Gaps = 7/185 (3%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
+RTALH A +IV+ L G VN ++ AG +PLHIA EIVK LL KGA
Sbjct: 40 SRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 352 DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNY 410
+N+ N +GCTPL A ++N E+ L+ G + + E TA+H A+ GNL+M++
Sbjct: 98 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 157
Query: 411 LLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFG 469
LL + + N QD +G TPL + + +E ++ GA I + + T L +A G
Sbjct: 158 LLYYKASTNIQDTEGNTPLHLACD-EERVEEAKLLVSQGASIYIENKEEKTPLQVA--KG 214
Query: 470 NLAMV 474
L ++
Sbjct: 215 GLGLI 219
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 393 RTALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RTALH A G+ E+V +LL+ + +N +D GW+PL
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL----------------------- 77
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
H+A G +V L+ K +N+ N G TP+++A N EI +LL
Sbjct: 78 -----------HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 511 KLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLE 569
+ GA+ K T +H A +++M+ LL + N+QD +G TPLH A ++E
Sbjct: 127 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 570 VFNHLINSNADITMYKNDSPLHLACATGNMDMITYAM 606
L++ A I + + L A G + +I M
Sbjct: 187 EAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRM 223
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 4/153 (2%)
Query: 491 KTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG-VN 549
+T +++A H EI LL+LG V K + ++ LH+A E+V LL VN
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 550 LQDNKGCTPLHCAIVGNQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMK 607
+ GCTPLH A N+ E+ L+ +N D + + +H A A GN+ MI +
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY 160
Query: 608 Y-FDVNIENDIGETPLHVAVSHGCLEAVKFLLN 639
Y NI++ G TPLH+A +E K L++
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 217 ALCWALQEKKTDIAKLLVDKGVPLN------------------------LVDKGVPLNYS 252
AL WA T+I + L+ GVP+N L+ KG +N
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 253 RRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLF 312
+ TPLH A + E+ +LLE GANP A + TA+H AA ++ ++ +L
Sbjct: 103 NQ--NGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEATAMHRAAAKGNLKMIHILL 159
Query: 313 DYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCA 367
Y A S N+Q+ G TPLH+AC + +E K+L+ +GA I N + TPL A
Sbjct: 160 YYKA--STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 42/215 (19%)
Query: 650 KDGSTALFFACYDKRLDLVEILLEANADVN-LGDGTYTPLYTALMKDPSLDIIKMLVKYG 708
+D TAL +AC ++VE LL+ VN D ++PL+ A +I+K L+ G
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD-EIVKALLGKG 96
Query: 709 ADVNLTNE-ACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNN 767
A VN N+ C TPLHYA+ + N
Sbjct: 97 AQVNAVNQNGC---TPLHYAASK-----------------------------------NR 118
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
++ LL+ GA+PD D + + + + +G +++ LL Y A TN++ + G+T LH
Sbjct: 119 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE-GNTPLH 177
Query: 828 TAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
A +++ KLL+ A I E+K K A
Sbjct: 178 LACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 8/189 (4%)
Query: 588 SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+ LH AC+ G+ +++ + ++ VN ++D G +PLH+A S G E VK LL K VN
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVN 100
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLV 705
++G T L +A R ++ +LLE A+ + D T ++ A K +L +I +L+
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG-NLKMIHILL 159
Query: 706 KYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFG 765
Y A N+ + TPLH A + A+ LV + A I + N +T L A G
Sbjct: 160 YYKASTNIQDTEGN--TPLHLACDEERVEE-AKLLVSQ-GASIYIENKEEKTPLQVAKGG 215
Query: 766 NNLDLLKFL 774
L L + +
Sbjct: 216 LGLILKRMV 224
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 749 TLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLL 808
T + ++RTAL++A + ++++FLL+ G + D SPL + G EIV LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 809 EYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNW 868
A N ++G T LH AA N+ +I +LL+ A+ +A+D Y A H A N
Sbjct: 94 GKGAQVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 152
Query: 869 DIVTFLL--DAGSNI---EKATKYRMTFESSKVVEKHVAKLRAANIYVD 912
++ LL A +NI E T + + +V E + + A+IY++
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 201
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
T LH+A G +I FL++ + ++ + L+ AA +++K LL GA
Sbjct: 42 TALHWACSAGH-TEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 99
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
+ ++ +PL + + +EI LLE A+ + + + +TA+H AA L +I +L
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD-HYEATAMHRAAAKGNLKMIHIL 158
Query: 842 LKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
L Y A N +D G H AC + + L+ G++I
Sbjct: 159 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
R +D R L+ AD+ ++ T L+ AA +L++++ LLK GAD + D
Sbjct: 23 RAGQDDEVRILMAN-GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA 81
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + G EIV+ LL++ AD N + + G T LH AA+ L+I+++LLKY AD+N
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADVNAKDYE-GFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFL 874
A+DK+GK AF + N D+ L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGND 358
AA D V++L GA+ VN + G TPLH+A + LEIV++LL GAD+N+ ++
Sbjct: 21 AARAGQDDEVRILMANGAD--VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN 78
Query: 359 DGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER-TALHMASQFGNLEMVNYLLKH-IN 416
G TPL A LE+ L+ HG D++ + E T LH+A+ G+LE+V LLK+ +
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Query: 417 INHQDKDGWTPLTCSI 432
+N QDK G T SI
Sbjct: 139 VNAQDKFGKTAFDISI 154
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD+ A G T LHLA G+L +V L+K+ D+N+ ++ G TP++ A N HLEI
Sbjct: 37 GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIV 96
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAI 563
+LLK GADV K FT LH+A +E+V LL + VN QD G T +I
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADI--TMYKNDSPLHLACATGNMDMITYAMKY-FDV 611
G L A G EV L+ + AD+ T + +PLHLA TG+++++ +KY DV
Sbjct: 15 GKKLLEAARAGQDDEV-RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N ++ G TPLH+A +G LE V+ LL DVN K +G T L A YD L++VE+L
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 672 LEANADVNLGD 682
L+ ADVN D
Sbjct: 133 LKYGADVNAQD 143
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 5/160 (3%)
Query: 356 GNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLKH 414
G+D G L A A EV L+ +G D++ + T LH+A++ G+LE+V LLK+
Sbjct: 11 GSDLGKKLLEAARAGQDDEV-RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 415 -ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAM 473
++N D G TPL + LE+ +++ GAD+ AK +G T LHLA Y G+L +
Sbjct: 70 GADVNAWDNYGATPLHLAAD-NGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEI 128
Query: 474 VNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
V L+K+ D+N+++ GKT +I N + ++ +L KL
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + + G EIV+ LL+Y AD N +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD-NY 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G+T LH AA + L+I+++LLK+ AD+NA+D G H A + +IV LL G+++
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
+DLGK + A E+ +L+ GADV T LH+A + +E+V LL +
Sbjct: 12 SDLGKKLLEAARAGQDDEV-RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITM--YKNDSPLHLACATGNMDMIT 603
VN DN G TPLH A LE+ L+ AD+ Y+ +PLHLA G+++++
Sbjct: 71 ADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVE 130
Query: 604 YAMKY-FDVNIENDIGETPLHVAVSHG 629
+KY DVN ++ G+T +++ +G
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKN--DSPLHLACATGNMDMITYA 605
VN D G TPLH A LE+ L+ AD+ + N +PLHLA G+++++
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K+ DVN ++ G TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D G TPL + K LE+ +++ GAD+ A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAK-TGHLEIVEVLLKYGADVNAWDNY 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LHLA G+L +V L+KH D+N+++ G TP++ A + HLEI +LLK GADV
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A + D V IL+ ADVN D +TPL+ A K L+I+++L+KYGADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLA-AKTGHLEIVEVLLKYGADVNAW 76
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+ Y TPLH A+ G +I L++ AD+ +++ T L+ AA+ +L++++ L
Sbjct: 77 DN--YGATPLHLAADNGHL-EIVEVLLKH-GADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 775 LKAGADPDILD 785
LK GAD + D
Sbjct: 133 LKYGADVNAQD 143
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N T G T LH AA L+I+++LLKY AD+NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
D YG H A + +IV LL G+++
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G+ L A + +I ++L+ G +N D NY TPLH A N +E+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWD-----NYGA------TPLHLAADNGHLEI 95
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++LL+ GA+ A + T LH+AA ++IV++L YGA+ VN Q+ G T I
Sbjct: 96 VEVLLKHGADVNA-KDYEGFTPLHLAAYDGHLEIVEVLLKYGAD--VNAQDKFGKTAFDI 152
Query: 334 ACRRKCLEIVKIL 346
+ ++ +IL
Sbjct: 153 SIDNGNEDLAEIL 165
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + D K L++ G +N D + TPLH A N E+VK
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGADVNASDS-----------DGKTPLHLAAENGHKEVVK 54
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
LLL +GA+P A + S +T LH+AA ++VKLL GA+ N ++ G TPLH+A
Sbjct: 55 LLLSQGADPNAKD-SDGKTPLHLAAENGHKEVVKLLLSQGADP--NAKDSDGKTPLHLAA 111
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGC 384
E+VK+LL +GAD N+ + DG TPL A EV L G
Sbjct: 112 ENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D VK L + GA+ VN + G TPLH+A E+VK+LL +GAD N+ + DG TPL
Sbjct: 18 DRVKDLLENGAD--VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH 75
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKH-ININHQDKD 423
A EV L++ G D + + + +T LH+A++ G+ E+V LL + N D D
Sbjct: 76 LAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD 135
Query: 424 GWTPL 428
G TPL
Sbjct: 136 GRTPL 140
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ GN + V LL++ ++N D DG TPL + + EV ++ GAD AK D
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAE-NGHKEVVKLLLSQGADPNAKDSD 69
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LHLA G+ +V L+ D N+++ GKTP++ A +N H E+ LLL GAD
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSHIG 547
T L +A E + E+V L G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 465 ACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN 523
A GN V L+++ D+N+ + GKTP++ A +N H E+ LLL GAD K
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 524 FTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADIT 582
T LH+A E E+V LLS N +D+ G TPLH A EV L++ AD
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 583 MYKND--SPLHLACATGNMDMI 602
+D +PL LA GN +++
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVV 152
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQ 401
VK LL+ GAD+N+ + DG TPL A EV L++ G D + + + +T LH+A++
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE 79
Query: 402 FGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTT 460
G+ E+V LL + N +D DG TPL + + EV ++ GAD DG T
Sbjct: 80 NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE-NGHKEVVKLLLSQGADPNTSDSDGRT 138
Query: 461 ALHLACYFGNLAMVNYLVKH 480
L LA GN +V L K
Sbjct: 139 PLDLAREHGNEEVVKLLEKQ 158
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
++LGK I A N + +LL + GADV T LH+A E E+V LLS
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMIT 603
N +D+ G TPLH A EV L++ AD +D +PLHLA G+ +++
Sbjct: 61 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVK 120
Query: 604 YAM-KYFDVNIENDIGETPLHVAVSHGCLEAVKFL 637
+ + D N + G TPL +A HG E VK L
Sbjct: 121 LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 727 ASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDL 786
A+ G+ + + L E AD+ + + +T L+ AA + +++K LL GADP+ D
Sbjct: 11 AAENGNKDRVKDLL--ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+PL + G E+V LL AD N + G T LH AA + +++KLLL A
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKD-SDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIE 882
D N D G+ A + N ++V L G +E
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 593 ACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKD 651
A GN D + ++ DVN + G+TPLH+A +G E VK LL ++ D N K D
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSD 69
Query: 652 GSTALFFACYDKRLDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGAD 710
G T L A + ++V++LL AD N D TPL+ A ++ +++K+L+ GAD
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA-AENGHKEVVKLLLSQGAD 128
Query: 711 VNLTNEACYYMTPLHYASYRGD 732
N ++ TPL A G+
Sbjct: 129 PNTSD--SDGRTPLDLAREHGN 148
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD+ A G T LHLA YFG+L +V L+K+ D+N+++ LG TP++ A HLE+
Sbjct: 37 GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVV 96
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAI 563
+LLK GADV + FT LH+A +E+V LL H VN QD G T +I
Sbjct: 97 EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + T L+ AA+ +L++++ LLK GAD + D
Sbjct: 21 AARAGQDDEVRILMANG-ADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
+PL + +G E+V+ LL+ AD N +G T LH AA L+I+++LLK+ AD
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNAND-HNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFL 874
+NA+DK+GK AF + N D+ L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A + T LH+AA ++IV++L GA+ VN + G+TPLH+
Sbjct: 30 VRILMANGADVNASDHV-GWTPLHLAAYFGHLEIVEVLLKNGAD--VNADDSLGVTPLHL 86
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A R LE+V++LL GAD+N+ + +G TPL A LE+ L+ HG D++ +
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 393 RTALHMASQFGNLEMVNYLLK 413
+TA ++ GN ++ L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 35/181 (19%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ + G TPL
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPL----------------------------- 51
Query: 394 TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
H+A+ FG+LE+V LLK+ ++N D G TPL + + LEV +++ GAD+
Sbjct: 52 ---HLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAAD-RGHLEVVEVLLKNGADVN 107
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
A +G T LHLA G+L +V L+KH D+N+++ GKT +I N + ++ +L K
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Query: 512 L 512
L
Sbjct: 168 L 168
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
+DLGK + A E+ +L+ GADV +T LH+A F +E+V LL +
Sbjct: 12 SDLGKKLLEAARAGQDDEV-RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG 70
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMIT 603
VN D+ G TPLH A LEV L+ + AD+ ++ +PLHLA G+++++
Sbjct: 71 ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVE 130
Query: 604 YAMKY-FDVNIENDIGETPLHVAVSHG 629
+K+ DVN ++ G+T +++ +G
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D GWTPL + LE+ +++ GAD+ A
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAY-FGHLEIVEVLLKNGADVNADDSL 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LHLA G+L +V L+K+ D+N+ + G TP++ A HLEI +LLK GADV
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS----PLHLACATGNMDMIT 603
VN D+ G TPLH A LE+ L+ + AD+ +DS PLHLA G+++++
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN--ADDSLGVTPLHLAADRGHLEVVE 97
Query: 604 YAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYD 662
+K DVN + G TPLH+A + G LE V+ LL DVN + K G TA + +
Sbjct: 98 VLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 156
Query: 663 KRLDLVEILLEAN 675
DL EIL + N
Sbjct: 157 GNEDLAEILQKLN 169
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN + +G TPLH+A G LE V+ LL DVN G T L A L++VE
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVNADDSLGVTPLHLAADRGHLEVVE 97
Query: 670 ILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D +TPL+ A L+I+++L+K+GADVN
Sbjct: 98 VLLKNGADVNANDHNGFTPLHLA-ANIGHLEIVEVLLKHGADVN 140
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A +E+V++LL+ GA+ A + S T LH+AA +++V++L GA+ +
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNA-DDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
N N G TPLH+A LEIV++LL GAD+N+ + G T +I
Sbjct: 108 ANDHN--GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Query: 588 SPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+PLHLA G+++++ +K DVN ++ +G TPLH+A G LE V+ LL DVN
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLL-KNGADVN 107
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVK 706
+G T L A L++VE+LL+ ADVN D + + + + D+ ++L K
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + G EIV+ LL+ AD N
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD-SL 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA L+++++LLK AD+NA D G H A + +IV LL G+++
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN G T L A Y L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 675 NADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D TPL+ A + L+++++L+K GADVN + + TPLH A+ G
Sbjct: 70 GADVNADDSLGVTPLHLAADR-GHLEVVEVLLKNGADVNANDHNGF--TPLHLAANIGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
+I L++ AD+ ++ +TA + + N DL + L K
Sbjct: 127 -EIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A + D V IL+ ADVN D +TPL+ A L+I+++L+K GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYF-GHLEIVEVLLKNGADVNAD 76
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+ +TPLH A+ RG + L + AD+ + N T L+ AA +L++++ L
Sbjct: 77 D--SLGVTPLHLAADRGHLEVVEVLL--KNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 775 LKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYN 811
LK GAD + D + S G ++ + L + N
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N + G T LH AA+ L+I+++LLK AD+NA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
D G H A + ++V LL G+++
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A++ + +V+LL+ GA+P+A+++ +TA H+A S ++ L D A +
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 320 VNVQ--NVAGLTPLHIACRRKCLEIVKILLDKGADINSGN-DDGCTPLFCAIAQNCLEVF 376
++++ N GLT LH+A +C E V++LL++GADI++ + G +PL A+ N L +
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 377 NYLVNHGCDLSVPE-GERTALHMASQFGNLEMVNYLLK 413
L+ HG +++ +ALH AS G L +V L++
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 21/235 (8%)
Query: 552 DNKGCTPLHCAIVGNQLEVFNHLIN----SNADITMYKN--DSPLHLACATGNMDMITYA 605
D G TPLH A+V L + L+N ++ +Y N +PLHLA T ++
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 606 MKYFDVNIENDI-GETPLHVAVSHGCLEAVKFLLNTK---NIDVNHKTKDGSTALFFACY 661
+ + D G+T H+A H ++ LL++ +D+ + DG TAL A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 662 DKRLDLVEILLEANADVNLGD--GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACY 719
+ + V++LLE AD++ D +PL A+ ++ SL ++++L+++GA+VN A
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGANVN----AQM 180
Query: 720 Y--MTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLK 772
Y + LH AS RG + R LV AD +L+N +N T L A +D+L+
Sbjct: 181 YSGSSALHSASGRG-LLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 45/261 (17%)
Query: 587 DSPLHLACATGNMDMITYAMKYF-----DVNIENDIGETPLHVAVSHGCLEAVKFLLNTK 641
D+PLH+A GN+ + + F +++I N++ +TPLH+AV L +V LL T
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI-TTLPSVVRLLVTA 68
Query: 642 NIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDII 701
+ G TA AC + + LL++ A GT LD+
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP-----GT-------------LDL- 109
Query: 702 KMLVKYGADVNLTNEACYY--MTPLHYASYRGDCNDIARFLVEECNADITLRNFNN-RTA 758
EA Y +T LH A +C + + L+E ADI + + R+
Sbjct: 110 --------------EARNYDGLTALHVA-VNTECQETVQLLLER-GADIDAVDIKSGRSP 153
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
L A N+L +++ LL+ GA+ + +S L S+ +GL +V TL+ AD++L+
Sbjct: 154 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 213
Query: 819 IKHGSTALHTAAFHNQLDIIK 839
H T L A +DI++
Sbjct: 214 C-HNDTPLMVARSRRVIDILR 233
Score = 62.8 bits (151), Expect = 9e-10, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 242 LVDKGVP--LNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVA 299
L+D P L+ R + T LH A+ E V+LLLE+GA+ A++ R+ L A
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 300 AIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDD 359
S+ +V+LL +GA +VN Q +G + LH A R L +V+ L+ GAD + N
Sbjct: 158 VENNSLSMVQLLLQHGA--NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH 215
Query: 360 GCTPLFCAIAQNCLEVF 376
TPL A ++ +++
Sbjct: 216 NDTPLMVARSRRVIDIL 232
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 22/224 (9%)
Query: 356 GNDDGCTPLFCAIAQNCLEVFNYLVN----HGCDLSVPEGER-TALHMASQFGNLEMVNY 410
++DG TPL A+ Q L + LVN G +L + R T LH+A L V
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-ITTLPSVVR 63
Query: 411 LLKHININHQ--DKDGWTP--LTCSIKGQASLEVFHSIIEAGA-DIKAKLMDGTTALHLA 465
LL + D+ G T L C + L G D++A+ DG TALH+A
Sbjct: 64 LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123
Query: 466 CYFGNLAMVNYLVKH------IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVK 519
V L++ +DI S G++P+ A++NN L + LLL+ GA+V +
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKS----GRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179
Query: 520 MKSNFTCLHVACEFASIEMVSFLL-SHIGVNLQDNKGCTPLHCA 562
M S + LH A + +V L+ S +L++ TPL A
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 13/203 (6%)
Query: 686 TPLYTALMKD--PSLD-IIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
TPL+ A+++ P++ ++ + + G ++++ N TPLH A + R LV
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN--LRQTPLHLAVIT-TLPSVVRLLVT 67
Query: 743 ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK-----DTSPLLSSCR 797
+ + L + + +TA + A + L+ LL + A P LDL+ + L +
Sbjct: 68 AGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAA-PGTLDLEARNYDGLTALHVAVN 125
Query: 798 QGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKI 857
E V LLE AD + IK G + L A +N L +++LLL++ A++NA+ G
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 185
Query: 858 AFHSACQAKNWDIVTFLLDAGSN 880
A HSA +V L+ +G++
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGAD 208
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 13/224 (5%)
Query: 294 TALHVAAI---VESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKG 350
T LH+A + + +V + LF G + +++ N TPLH+A +V++L+ G
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGG-RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 351 ADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER-----TALHMASQFGNL 405
A + + G T A L++ ++ R TALH+A
Sbjct: 70 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 129
Query: 406 EMVNYLLKH-ININHQD-KDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALH 463
E V LL+ +I+ D K G +PL +++ SL + +++ GA++ A++ G++ALH
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGANVNAQMYSGSSALH 188
Query: 464 LACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
A G L +V LV+ D + +N TP+ A ++I
Sbjct: 189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + + +T L+ AA +L++++ LLK GAD + D
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
+PL + G EIV+ LL+ AD N T +G T LH AA L+I+++LLKY AD
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFL 874
+NA+DK+GK AF + N D+ L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 4/129 (3%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN ++ +G TPLH+A + LEIV++LL GAD+N+ + G TPL
Sbjct: 28 DEVRILMANGAD--VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLH 85
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVPEGER-TALHMASQFGNLEMVNYLLKH-ININHQDKD 423
A LE+ L+ +G D++ + T LH+A+ G+LE+V LLK+ ++N QDK
Sbjct: 86 LAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKF 145
Query: 424 GWTPLTCSI 432
G T SI
Sbjct: 146 GKTAFDISI 154
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + +G EIV+ LL++ AD N K
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD-KM 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA + L+I+++LLK AD+NA D YG H A A + +IV LL G+++
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+E+D GKTP++ A HLEI +LLK GADV K T LH+A + +E+V
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEV 98
Query: 542 LLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LL + VN D G TPLH A LE+ L+ AD+
Sbjct: 99 LLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADIKAKLM 456
A++ G + V L+ + ++N +D G TPL +IKG LE+ +++ GAD+ A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGH--LEIVEVLLKHGADVNAADK 78
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
G T LHLA +G+L +V L+K+ D+N+ + G TP++ A HLEI +LLK GAD
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFL 542
V + K T ++ + + ++ L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN E+D G+TPLH+A G LE V+ LL DVN K G T L A L++VE
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLK-HGADVNAADKMGDTPLHLAALYGHLEIVE 97
Query: 670 ILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D +TPL+ A L+I+++L+KYGADVN
Sbjct: 98 VLLKNGADVNATDTYGFTPLHLA-ADAGHLEIVEVLLKYGADVN 140
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMITYA 605
VN +D+ G TPLH A + LE+ L+ AD+ D+PLHLA G+++++
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 606 MK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K DVN + G TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 37/182 (20%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ +D G TPL
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPL----------------------------- 51
Query: 394 TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADI 451
H+A+ G+LE+V LLKH ++N DK G TPL ++ G LE+ +++ GAD+
Sbjct: 52 ---HLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH--LEIVEVLLKNGADV 106
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
A G T LHLA G+L +V L+K+ D+N+++ GKT +I N + ++ +L
Sbjct: 107 NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 511 KL 512
KL
Sbjct: 167 KL 168
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N D TPLH A + +E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDD-----------SGKTPLHLAAIKGHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A +K + T LH+AA+ ++IV++L GA+ VN + G TPLH+A
Sbjct: 65 VLLKHGADVNAADKMGD-TPLHLAALYGHLEIVEVLLKNGAD--VNATDTYGFTPLHLAA 121
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
LEIV++LL GAD+N+ + G T +I
Sbjct: 122 DAGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
+DLGK + A E+ +L+ GADV + S T LH+A +E+V LL H
Sbjct: 12 SDLGKKLLEAARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI--TMYKNDSPLHLACATGNMDMIT 603
VN D G TPLH A + LE+ L+ + AD+ T +PLHLA G+++++
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 604 YAMKY-FDVNIENDIGETPLHVAVSHG 629
+KY DVN ++ G+T +++ +G
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN + G T L A L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 675 NADVNLGDGTY-TPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D TPL+ A + L+I+++L+K GADVN T+ Y TPLH A+ G
Sbjct: 70 GADVNAADKMGDTPLHLAALY-GHLEIVEVLLKNGADVNATD--TYGFTPLHLAADAGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
+ L + AD+ ++ +TA + + N DL + L K
Sbjct: 127 EIVEVLL--KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A + D V IL+ ADVN D + TPL+ A +K L+I+++L+K+GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIK-GHLEIVEVLLKHGADVNAA 76
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
++ TPLH A+ G + L + AD+ + T L+ AA +L++++ L
Sbjct: 77 DKMGD--TPLHLAALYGHLEIVEVLL--KNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 775 LKAGAD 780
LK GAD
Sbjct: 133 LKYGAD 138
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIE 272
G L A + +I ++L+ G +N DK DTPLH A L +E
Sbjct: 46 SGKTPLHLAAIKGHLEIVEVLLKHGADVNAADK-----------MGDTPLHLAALYGHLE 94
Query: 273 LVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLH 332
+V++LL+ GA+ A + + T LH+AA ++IV++L YGA+ VN Q+ G T
Sbjct: 95 IVEVLLKNGADVNATD-TYGFTPLHLAADAGHLEIVEVLLKYGAD--VNAQDKFGKTAFD 151
Query: 333 IACRRKCLEIVKIL 346
I+ ++ +IL
Sbjct: 152 ISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + + T L+ AA +L++++ LLK GAD + DL
Sbjct: 21 AARAGQDDEVRILMAN-GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
+PL + G EIV+ LL++ AD N G T LH AA + L+I+++LLK+ AD
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYD-NDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFL 874
+NA+DK+GK AF + N D+ L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D DG+TPL + LE+ +++ GAD+ A +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAAS-NGHLEIVEVLLKNGADVNASDLT 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LHLA G+L +V L+KH D+N+ ++ G TP++ A K HLEI +LLK GADV
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 4/139 (2%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A + T LH+AA ++IV++L GA+ VN ++ G+TPLH+
Sbjct: 30 VRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLKNGAD--VNASDLTGITPLHL 86
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A LEIV++LL GAD+N+ ++DG TPL A LE+ L+ HG D++ +
Sbjct: 87 AAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146
Query: 393 RTALHMASQFGNLEMVNYL 411
+TA ++ GN ++ L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 5/155 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
+DLGK + A E+ +L+ GADV +T LH+A +E+V LL +
Sbjct: 12 SDLGKKLLEAARAGQDDEV-RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMIT 603
VN D G TPLH A LE+ L+ AD+ Y ND +PLHLA G+++++
Sbjct: 71 ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 604 YAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFL 637
+K+ DVN ++ G+T +++ +G + + L
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+ ++ G TP++ A N HLEI +LLK GADV + T LH+A +E+V
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEV 98
Query: 542 LLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LL H VN DN G TPLH A LE+ L+ AD+
Sbjct: 99 LLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N D + TPLH A N +E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDN-----------DGYTPLHLAASNGHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A + + T LH+AA ++IV++L +GA+ VN + G TPLH+A
Sbjct: 65 VLLKNGADVNASDLT-GITPLHLAAATGHLEIVEVLLKHGAD--VNAYDNDGHTPLHLAA 121
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
+ LEIV++LL GAD+N+ + G T +I
Sbjct: 122 KYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN ++ G TPLH+A S+G LE V+ LL DVN G T L A L++VE
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDLTGITPLHLAAATGHLEIVE 97
Query: 670 ILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D +TPL+ A K L+I+++L+K+GADVN
Sbjct: 98 VLLKHGADVNAYDNDGHTPLHLA-AKYGHLEIVEVLLKHGADVN 140
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + G EIV+ LL+ AD N +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT- 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA L+I+++LLK+ AD+NA D G H A + + +IV LL G+++
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 8/161 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN DG T L A + L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 675 NADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D T TPL+ A L+I+++L+K+GADVN + + TPLH A+ G
Sbjct: 70 GADVNASDLTGITPLHLAAAT-GHLEIVEVLLKHGADVNAYDNDGH--TPLHLAAKYGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+I L++ AD+ ++ +TA + + N DL + L
Sbjct: 127 -EIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 81/139 (58%), Gaps = 4/139 (2%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
+RTALH A +IV+ L G VN ++ AG +PLHIA EIVK LL KGA
Sbjct: 40 SRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 352 DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNY 410
+N+ N +GCTPL A ++N E+ L+ G + + + TA+H A+ GNL+MV+
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 411 LLKH-ININHQDKDGWTPL 428
LL + + N QD +G TPL
Sbjct: 158 LLFYKASTNIQDTEGNTPL 176
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 35/212 (16%)
Query: 393 RTALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RTALH A G+ E+V +LL+ + +N +D GW+PL H AG D
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL-------------HIAASAGXDE 87
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
K + LVK +N+ N G TP+++A N EI +LL+
Sbjct: 88 IVKAL--------------------LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEV 570
GA+ K + T +H A +++MV LL + N+QD +G TPLH A ++E
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Query: 571 FNHLINSNADITMYKNDSPLHLACATGNMDMI 602
L+ A I + + L A G + +I
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 5/173 (2%)
Query: 491 KTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMV-SFLLSHIGVN 549
+T +++A H EI LL+LG V K + ++ LH+A E+V + L+ VN
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 550 LQDNKGCTPLHCAIVGNQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMK 607
+ GCTPLH A N+ E+ L+ +N D + + + +H A A GN+ M+ +
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160
Query: 608 Y-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFA 659
Y NI++ G TPLH+A +E KFL+ T+ + + K+ T L A
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEEKTPLQVA 212
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 217 ALCWALQEKKTDIAKLLVDKGVPLN------------------------LVDKGVPLNYS 252
AL WA T+I + L+ GVP+N L+ KG +N
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 253 RRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLF 312
+ TPLH A + E+ +LLE GANP A + + TA+H AA ++ +V +L
Sbjct: 103 NQ--NGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHILL 159
Query: 313 DYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCA 367
Y A S N+Q+ G TPLH+AC + +E K L+ +GA I N + TPL A
Sbjct: 160 FYKA--STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 588 SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+ LH AC+ G+ +++ + ++ VN ++D G +PLH+A S G E VK LL K VN
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVN 100
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLV 705
++G T L +A R ++ +LLE A+ + D T ++ A K +L ++ +L+
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG-NLKMVHILL 159
Query: 706 KYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFG 765
Y A N+ + TPLH A + A+FLV + A I + N +T L A G
Sbjct: 160 FYKASTNIQDTEGN--TPLHLACDEERVEE-AKFLVTQ-GASIYIENKEEKTPLQVAKGG 215
Query: 766 NNLDLLKF 773
L L +
Sbjct: 216 LGLILKRL 223
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 42/215 (19%)
Query: 650 KDGSTALFFACYDKRLDLVEILLEANADVN-LGDGTYTPLYTALMKDPSLDIIKMLVKYG 708
+D TAL +AC ++VE LL+ VN D ++PL+ A +I+K L+ G
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD-EIVKALLVKG 96
Query: 709 ADVNLTNE-ACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNN 767
A VN N+ C TPLHYA+ + N
Sbjct: 97 AHVNAVNQNGC---TPLHYAASK-----------------------------------NR 118
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
++ LL+ GA+PD D D + + + +G ++V LL Y A TN++ + G+T LH
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE-GNTPLH 177
Query: 828 TAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
A +++ K L+ A I E+K K A
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 9/191 (4%)
Query: 728 SYRGDCNDI-ARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDL 786
+Y G +++ R L ++ A T + ++RTAL++A + ++++FLL+ G + D
Sbjct: 14 AYSGKLDELKERILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
SPL + G EIV LL A N ++G T LH AA N+ +I +LL+ A
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFLL--DAGSNI---EKATKYRMTFESSKVVEKHV 901
+ +A+D Y A H A N +V LL A +NI E T + + +V E
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 902 AKLRAANIYVD 912
+ A+IY++
Sbjct: 191 LVTQGASIYIE 201
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 38/183 (20%)
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
+I++ L++ G VN ++A + +PLH A+ G + LV+ A + N N T
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGW--SPLHIAASAGXDEIVKALLVK--GAHVNAVNQNGCTP 109
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
L++AA N ++ LL+ GA+PD D D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYD------------------------------ 139
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
+TA+H AA L ++ +LL Y A N +D G H AC + + FL+ G
Sbjct: 140 ----ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 879 SNI 881
++I
Sbjct: 196 ASI 198
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 131/272 (48%), Gaps = 34/272 (12%)
Query: 290 SRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDK 349
R T LH+AA V IV+LL +GA+ V+ ++ GL PLH AC E+ ++LL
Sbjct: 56 GRKSTPLHLAAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 350 GADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV--------------PE-GERT 394
GA +N+ + TPL A ++N +EV + L++HG D ++ PE ER
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173
Query: 395 -------ALHMASQFGNLEMVNYLLKHININ-HQDKDGWTPLTCSIKGQASL-----EVF 441
+L A++ +L V L IN Q + T L C++ ASL +V
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAV---ASLHPKRKQVA 230
Query: 442 HSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKN 500
++ GA++ K D T LH+A + ++ L KH +N+ + LG+T ++ A
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA 290
Query: 501 NHLEIFNLLLKLGADVAVKMKSNFTCLHVACE 532
HL+ LLL G+D ++ FT + E
Sbjct: 291 GHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE 322
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 122/279 (43%), Gaps = 31/279 (11%)
Query: 465 ACYFGNLAMVNYLVKHIDINSENDLGK--TPIYFAIKNNHLEIFNLLLKLGADVAVKMKS 522
A GN + L+ +++N G+ TP++ A N + I LLL+ GADV K K
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 523 NFTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LH AC + E+ LL H VN D TPLH A N++EV + L++ AD
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 582 TMY--KNDSPLHLACATGNMDMITYAMK---YFDVNIENDIG------------------ 618
T+ S + +A + +TY K E D+
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 619 -ETPLHVAVS--HGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
ET LH AV+ H + V LL K +VN K KD T L A D++E+L +
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270
Query: 676 ADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVNL 713
A +N D T L+ A + L ++L+ YG+D ++
Sbjct: 271 AKMNALDSLGQTALHRAALAG-HLQTCRLLLSYGSDPSI 308
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 141/315 (44%), Gaps = 36/315 (11%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-G 683
A G E + LL N++ + ST L A R+ +V++LL+ ADV+ D G
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 684 TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEE 743
PL+ A ++ ++L+K+GA VN + + TPLH A+ + ++ L+
Sbjct: 91 GLVPLHNACSYG-HYEVTELLLKHGACVNAMD--LWQFTPLHEAASKNRV-EVCSLLLSH 146
Query: 744 CNADITLRNFNNRTALNFAAFGNNLDLLKF------LLKAGADPDILDLKDTSPL----- 792
AD TL N + ++A++ A + L + LL+A + D+ +K T L
Sbjct: 147 -GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205
Query: 793 -------------LSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIK 839
++S ++ + LL A+ N + K T LH AA D+++
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN-KDFMTPLHVAAERAHNDVME 264
Query: 840 LLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN-----IEKATKYRMTFESS 894
+L K+ A +NA D G+ A H A A + LL GS+ ++ T +M E+
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV 324
Query: 895 KVVEKHVAKLRAANI 909
+ + +R +++
Sbjct: 325 QQILSESTPMRTSDV 339
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 123/272 (45%), Gaps = 32/272 (11%)
Query: 399 ASQFGNLEMVNYLLKHININHQDKDGW--TPLTCSIKGQASLEVFHSIIEAGADIKAKLM 456
A++ GN E + LL +N+N DG TPL + G + + +++ GAD+ AK
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA-GYNRVRIVQLLLQHGADVHAKDK 89
Query: 457 DGTTALHLACYFGNLAMVNYLVKHIDINSENDLGK-TPIYFAIKNNHLEIFNLLLKLGAD 515
G LH AC +G+ + L+KH + DL + TP++ A N +E+ +LLL GAD
Sbjct: 90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149
Query: 516 VAV---------------KMKSNFT------CLHVACEFASIEMVSFLLSHIGVNL-QDN 553
+ +++ T L A A + V L+ +N Q
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209
Query: 554 KGCTPLHCAIVG---NQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKY 608
T LHCA+ + +V L+ A++ D +PLH+A + D++ K+
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269
Query: 609 -FDVNIENDIGETPLHVAVSHGCLEAVKFLLN 639
+N + +G+T LH A G L+ + LL+
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 123/280 (43%), Gaps = 34/280 (12%)
Query: 537 EMVSFLLSHIGVNLQ--DNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS--PLHL 592
E + LL+ + VN D + TPLH A N++ + L+ AD+ PLH
Sbjct: 38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 593 ACATGNMDMITYAMKYFDVNIENDIGE-TPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKD 651
AC+ G+ ++ +K+ D+ + TPLH A S +E LL + D
Sbjct: 98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL-SHGADPTLVNCH 156
Query: 652 GSTALFFACYDKRLDLV------EILLEANADVNLG----------------DGTYTPLY 689
G +A+ A + + + LL+A + +L T L+
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH 216
Query: 690 TAL--MKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNAD 747
A+ + + ++L++ GA+VN N+ +MTPLH A+ R ND+ L + A
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKD--FMTPLHVAAERAH-NDVMEVL-HKHGAK 272
Query: 748 ITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ + +TAL+ AA +L + LL G+DP I+ L+
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQ 312
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
L A GN L+ L + D + ++PL + IV LL++ AD + +
Sbjct: 29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD 88
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
K G LH A + ++ +LLLK+ A +NA D + H A ++ + LL G
Sbjct: 89 -KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 879 SN 880
++
Sbjct: 148 AD 149
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 18/137 (13%)
Query: 188 ALEEELTNIFKKFDL----LEHPEYLSHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLV 243
A E +L + K L + P+ SH +L K+ +A+LL+ KG +N
Sbjct: 186 AREADLAKVKKTLALEIINFKQPQ--SHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243
Query: 244 DKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVE 303
+K + TPLH A + +++++L + GA A++ S +TALH AA+
Sbjct: 244 NK-----------DFMTPLHVAAERAHNDVMEVLHKHGAKMNALD-SLGQTALHRAALAG 291
Query: 304 SVDIVKLLFDYGAEKSV 320
+ +LL YG++ S+
Sbjct: 292 HLQTCRLLLSYGSDPSI 308
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
Query: 740 LVEECNADITLRNFNN---RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSC 796
++ + D+ NF N +T L+ A N ++ + LL AG DP++ D + +PL +C
Sbjct: 24 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 83
Query: 797 RQGLYEIVDTLLEYNADTNLRTI-----KHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
QG V L + +L +I +G T LH A+ H L I++LL+ AD+NA+
Sbjct: 84 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
Query: 852 DK-YGKIAFHSACQAKNWDIVTFLLDAGSNIEKAT-----KYRMTF-ESSKVVEKHVAKL 904
+ G+ A H A +N D+V+ LL G+++ + T Y++T+ S +++ + +L
Sbjct: 144 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 203
Query: 905 RAANI 909
N+
Sbjct: 204 TLENL 208
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 40/173 (23%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMK 607
+N Q+N TPLH A++ NQ E+ L+ + D
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD--------------------------- 67
Query: 608 YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHK-----TKDGSTALFFACYD 662
+ + G TPLH+A GCL +V L + H +G T L A
Sbjct: 68 ---PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 124
Query: 663 KRLDLVEILLEANADVNLGD--GTYTPLYTAL-MKDPSLDIIKMLVKYGADVN 712
L +VE+L+ ADVN + T L+ A+ +++P D++ +L+K GADVN
Sbjct: 125 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP--DLVSLLLKCGADVN 175
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 16/184 (8%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKHID-----INSENDLGKTPIYFAIKNNHLEIFNLLLK 511
DG + LHLA A+ +++ + +N +N+L +TP++ A+ N EI LL
Sbjct: 4 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 63
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMVSFLLS-------HIGVNLQDNKGCTPLHCAIV 564
G D ++ T LH+ACE + V L H + + G T LH A +
Sbjct: 64 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 123
Query: 565 GNQLEVFNHLINSNADITMYK---NDSPLHLACATGNMDMITYAMKY-FDVNIENDIGET 620
L + L++ AD+ + + LHLA N D+++ +K DVN G +
Sbjct: 124 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 183
Query: 621 PLHV 624
P +
Sbjct: 184 PYQL 187
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 417 INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
+N Q+ TPL ++ E+ +++ AG D + + G T LHLAC G LA V
Sbjct: 35 LNFQNNLQQTPLHLAVITNQP-EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 93
Query: 477 LVK-------HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN-FTCLH 528
L + H + + N G T ++ A + +L I LL+ LGADV + N T LH
Sbjct: 94 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 153
Query: 529 VACEFASIEMVSFLL 543
+A + + ++VS LL
Sbjct: 154 LAVDLQNPDLVSLLL 168
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 74/177 (41%), Gaps = 30/177 (16%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+N QN TPLH+A EI + LL G D + G TPL A Q CL L
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 380 VNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPL-TCSIKGQASL 438
C T H+ S +LK N N G T L SI G L
Sbjct: 95 -TQSC---------TTPHLHS----------ILKATNYN-----GHTCLHLASIHGY--L 127
Query: 439 EVFHSIIEAGADIKAK-LMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTP 493
+ ++ GAD+ A+ +G TALHLA N +V+ L+K D+N G +P
Sbjct: 128 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
T LH A ++ + +V+LL+ GA+ A E RTALH+A +++ D+V LL GA+
Sbjct: 116 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-- 173
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKIL 346
VN G +P + R I + L
Sbjct: 174 VNRVTYQGYSPYQLTWGRPSTRIQQQL 200
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 81/139 (58%), Gaps = 4/139 (2%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
+RTALH A +IV+ L G VN ++ AG +PLHIA EIVK LL KGA
Sbjct: 40 SRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 352 DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNY 410
+N+ N +GCTPL A ++N E+ L+ G + + + TA+H A+ GNL+MV+
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 411 LLKH-ININHQDKDGWTPL 428
LL + + N QD +G TPL
Sbjct: 158 LLFYKASTNIQDTEGNTPL 176
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 35/212 (16%)
Query: 393 RTALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RTALH A G+ E+V +LL+ + +N +D GW+PL H AG D
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL-------------HIAASAGRDE 87
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
K + LVK +N+ N G TP+++A N EI +LL+
Sbjct: 88 IVKAL--------------------LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEV 570
GA+ K + T +H A +++MV LL + N+QD +G TPLH A ++E
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Query: 571 FNHLINSNADITMYKNDSPLHLACATGNMDMI 602
L+ A I + + L A G + +I
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 5/173 (2%)
Query: 491 KTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMV-SFLLSHIGVN 549
+T +++A H EI LL+LG V K + ++ LH+A E+V + L+ VN
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVN 100
Query: 550 LQDNKGCTPLHCAIVGNQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMK 607
+ GCTPLH A N+ E+ L+ +N D + + + +H A A GN+ M+ +
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160
Query: 608 Y-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFA 659
Y NI++ G TPLH+A +E KFL+ T+ + + K+ T L A
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEEKTPLQVA 212
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 217 ALCWALQEKKTDIAKLLVDKGVPLN------------------------LVDKGVPLNYS 252
AL WA T+I + L+ GVP+N L+ KG +N
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV 102
Query: 253 RRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLF 312
+ TPLH A + E+ +LLE GANP A + + TA+H AA ++ +V +L
Sbjct: 103 NQ--NGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHILL 159
Query: 313 DYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCA 367
Y A S N+Q+ G TPLH+AC + +E K L+ +GA I N + TPL A
Sbjct: 160 FYKA--STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 588 SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+ LH AC+ G+ +++ + ++ VN ++D G +PLH+A S G E VK LL K VN
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL-VKGAHVN 100
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLV 705
++G T L +A R ++ +LLE A+ + D T ++ A K +L ++ +L+
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG-NLKMVHILL 159
Query: 706 KYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFG 765
Y A N+ + TPLH A + A+FLV + A I + N +T L A G
Sbjct: 160 FYKASTNIQDTEGN--TPLHLACDEERVEE-AKFLVTQ-GASIYIENKEEKTPLQVAKGG 215
Query: 766 NNLDLLKF 773
L L +
Sbjct: 216 LGLILKRL 223
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 42/215 (19%)
Query: 650 KDGSTALFFACYDKRLDLVEILLEANADVN-LGDGTYTPLYTALMKDPSLDIIKMLVKYG 708
+D TAL +AC ++VE LL+ VN D ++PL+ A +I+K L+ G
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD-EIVKALLVKG 96
Query: 709 ADVNLTNE-ACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNN 767
A VN N+ C TPLHYA+ + N
Sbjct: 97 AHVNAVNQNGC---TPLHYAASK-----------------------------------NR 118
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
++ LL+ GA+PD D D + + + +G ++V LL Y A TN++ + G+T LH
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE-GNTPLH 177
Query: 828 TAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
A +++ K L+ A I E+K K A
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 9/191 (4%)
Query: 728 SYRGDCNDI-ARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDL 786
+Y G +++ R L ++ A T + ++RTAL++A + ++++FLL+ G + D
Sbjct: 14 AYSGKLDELKERILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
SPL + G EIV LL A N ++G T LH AA N+ +I +LL+ A
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFLL--DAGSNI---EKATKYRMTFESSKVVEKHV 901
+ +A+D Y A H A N +V LL A +NI E T + + +V E
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 902 AKLRAANIYVD 912
+ A+IY++
Sbjct: 191 LVTQGASIYIE 201
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 38/183 (20%)
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
+I++ L++ G VN ++A + +PLH A+ G + LV+ A + N N T
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGW--SPLHIAASAGRDEIVKALLVK--GAHVNAVNQNGCTP 109
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
L++AA N ++ LL+ GA+PD D D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYD------------------------------ 139
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
+TA+H AA L ++ +LL Y A N +D G H AC + + FL+ G
Sbjct: 140 ----ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 879 SNI 881
++I
Sbjct: 196 ASI 198
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + T L+ AA+ +L++++ LLK GAD + D
Sbjct: 21 AARAGRDDEVRILMAN-GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
++PL + G EIV+ LL+ AD N + +G T LH AA L+I+++LLKY AD
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKD-DNGITPLHLAANRGHLEIVEVLLKYGAD 138
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFL 874
+NA+DK+GK AF + N D+ L
Sbjct: 139 VNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD+ A + G T LHLA Y+G+L +V L+K+ D+N+ + LG TP++ A HLEI
Sbjct: 37 GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIV 96
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAI 563
+LLK GADV K + T LH+A +E+V LL + VN QD G T +I
Sbjct: 97 EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D GWTPL + LE+ +++ GAD+ A
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAYDTL 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G+T LHLA +FG+L +V L+K+ D+N+++D G TP++ A HLEI +LLK GADV
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + ++ L
Sbjct: 140 NAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 35/181 (19%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A R + V+IL+ GAD+N+ + G TPL A LE+ L+ +G D++ +
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 393 RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
T LH+A+ FG+LE+V LLK+ GAD+
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKN---------------------------------GADVN 107
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
AK +G T LHLA G+L +V L+K+ D+N+++ GKT +I N + ++ +L K
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Query: 512 L 512
L
Sbjct: 168 L 168
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A + T LH+AA ++IV++L GA+ VN + G TPLH+
Sbjct: 30 VRILMANGADVNAADVV-GWTPLHLAAYWGHLEIVEVLLKNGAD--VNAYDTLGSTPLHL 86
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A LEIV++LL GAD+N+ +D+G TPL A + LE+ L+ +G D++ +
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 393 RTALHMASQFGNLEMVNYLLK 413
+TA ++ GN ++ L K
Sbjct: 147 KTAFDISINNGNEDLAEILQK 167
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMITYA 605
VN D G TPLH A LE+ L+ + AD+ Y +PLHLA G+++++
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 606 MK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K DVN ++D G TPLH+A + G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY-GADVNAQDKFGKTAFDISINNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N D + TPLH A +E+V+
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAAD-----------VVGWTPLHLAAYWGHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A + + T LH+AA ++IV++L GA+ VN ++ G+TPLH+A
Sbjct: 65 VLLKNGADVNAYD-TLGSTPLHLAAHFGHLEIVEVLLKNGAD--VNAKDDNGITPLHLAA 121
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
R LEIV++LL GAD+N+ + G T +I
Sbjct: 122 NRGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN + +G TPLH+A G LE V+ LL DVN GST L A + L++VE
Sbjct: 39 DVNAADVVGWTPLHLAAYWGHLEIVEVLLKN-GADVNAYDTLGSTPLHLAAHFGHLEIVE 97
Query: 670 ILLEANADVNL-GDGTYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D TPL+ A + L+I+++L+KYGADVN
Sbjct: 98 VLLKNGADVNAKDDNGITPLHLAANR-GHLEIVEVLLKYGADVN 140
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 769 DLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHT 828
D ++ L+ GAD + D+ +PL + G EIV+ LL+ AD N GST LH
Sbjct: 28 DEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL-GSTPLHL 86
Query: 829 AAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYR 888
AA L+I+++LLK AD+NA+D G H A + +IV LL G+++ K+
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 889 MT 890
T
Sbjct: 147 KT 148
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
+DLGK + A E+ +L+ GADV +T LH+A + +E+V LL +
Sbjct: 12 SDLGKKLLEAARAGRDDEV-RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG 70
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMIT 603
VN D G TPLH A LE+ L+ + AD+ ++ +PLHLA G+++++
Sbjct: 71 ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 604 YAMKY-FDVNIENDIGETPLHVAVSHG 629
+KY DVN ++ G+T +++++G
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISINNG 157
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 579 ADITMYKNDSPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFL 637
AD+ + +PLHLA G+++++ +K DVN + +G TPLH+A G LE V+ L
Sbjct: 43 ADVVGW---TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 638 LNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPS 697
L DVN K +G T L A L++VE+LL+ ADVN D + + + +
Sbjct: 100 LKN-GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGN 158
Query: 698 LDIIKMLVK 706
D+ ++L K
Sbjct: 159 EDLAEILQK 167
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN G T L A Y L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GRDDEVRILM-ANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 675 NADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D TPL+ A L+I+++L+K GADVN ++ +TPLH A+ RG
Sbjct: 70 GADVNAYDTLGSTPLHLA-AHFGHLEIVEVLLKNGADVNAKDDNG--ITPLHLAANRGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
+ L + AD+ ++ +TA + + N DL + L K
Sbjct: 127 EIVEVLL--KYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A R D V IL+ ADVN D +TPL+ A L+I+++L+K GADVN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYW-GHLEIVEVLLKNGADVNAY 76
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+ TPLH A++ G +I L++ AD+ ++ N T L+ AA +L++++ L
Sbjct: 77 D--TLGSTPLHLAAHFGHL-EIVEVLLKN-GADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 775 LKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYN 811
LK GAD + D + S G ++ + L + N
Sbjct: 133 LKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 86.3 bits (212), Expect = 8e-17, Method: Composition-based stats.
Identities = 59/143 (41%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGND 358
AA D V++L GA+ VN + GLTPLH+A LEIV++LL GAD+N+ +
Sbjct: 13 AAAAGQDDEVRILMANGAD--VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDS 70
Query: 359 DGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE-GERTALHMASQFGNLEMVNYLLKH-IN 416
G TPL A LE+ L+ HG D++ + T LH+A+ G LE+V LLKH +
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Query: 417 INHQDKDGWTPLTCSI-KGQASL 438
+N QD G T SI +GQ L
Sbjct: 131 VNAQDALGLTAFDISINQGQEDL 153
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 593 ACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKD 651
A A G D + M DVN +D G TPLH+A ++G LE V+ LL DVN
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN-GADVNASDSA 71
Query: 652 GSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGAD 710
G T L A YD L++VE+LL+ ADVN D +TPL+ A + L+I+++L+K+GAD
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSG-QLEIVEVLLKHGAD 130
Query: 711 VN 712
VN
Sbjct: 131 VN 132
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLL 793
+D R L+ AD+ + N T L+ AA L++++ LLK GAD + D +PL
Sbjct: 19 DDEVRILMAN-GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLH 77
Query: 794 SSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDK 853
+ G EIV+ LL++ AD N + G T LH AA QL+I+++LLK+ AD+NA+D
Sbjct: 78 LAAYDGHLEIVEVLLKHGADVNAYD-RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDA 136
Query: 854 YGKIAFHSACQAKNWDIVTFL 874
G AF + D+ L
Sbjct: 137 LGLTAFDISINQGQEDLAEIL 157
Score = 73.9 bits (180), Expect = 5e-13, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G D+ KL++ A G V L+ + D+N+ +D G TP++ A N LEI
Sbjct: 3 GQDLGKKLLEAAAA-------GQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIV 55
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVG 565
+LLK GADV + T LH+A +E+V LL H VN D G TPLH A +
Sbjct: 56 EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALS 115
Query: 566 NQLEVFNHLINSNADI 581
QLE+ L+ AD+
Sbjct: 116 GQLEIVEVLLKHGADV 131
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A N +E+V++LL+ GA+ A + S T LH+AA ++IV++L +GA+
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNASD-SAGITPLHLAAYDGHLEIVEVLLKHGAD-- 97
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQ 370
VN + AG TPLH+A LEIV++LL GAD+N+ + G T +I Q
Sbjct: 98 VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQ 148
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 416 NINHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVN 475
++N D +G TPL + LE+ +++ GAD+ A G T LHLA Y G+L +V
Sbjct: 31 DVNATDDNGLTPLHLA-AANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVE 89
Query: 476 YLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVA 530
L+KH D+N+ + G TP++ A + LEI +LLK GADV + T ++
Sbjct: 90 VLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDIS 145
Score = 69.7 bits (169), Expect = 7e-12, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 488 DLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-I 546
DLGK + A E+ +L+ GADV + T LH+A +E+V LL +
Sbjct: 5 DLGKKLLEAAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 547 GVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITY 604
VN D+ G TPLH A LE+ L+ AD+ Y +PLHLA +G ++++
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 605 AMKY-FDVNIENDIGETPLHVAVSHG 629
+K+ DVN ++ +G T ++++ G
Sbjct: 124 LLKHGADVNAQDALGLTAFDISINQG 149
Score = 69.7 bits (169), Expect = 8e-12, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
L AA G + D ++ L+ GAD + D +PL + G EIV+ LL+ AD N +
Sbjct: 11 LEAAAAGQD-DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN-AS 68
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
G T LH AA+ L+I+++LLK+ AD+NA D+ G H A + +IV LL G
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 879 SNI 881
+++
Sbjct: 129 ADV 131
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 35/169 (20%)
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQF 402
V+IL+ GAD+N+ +D+G TPL H+A+
Sbjct: 22 VRILMANGADVNATDDNGLTPL--------------------------------HLAAAN 49
Query: 403 GNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTA 461
G LE+V LLK+ ++N D G TPL + LE+ +++ GAD+ A G T
Sbjct: 50 GQLEIVEVLLKNGADVNASDSAGITPLHLAAY-DGHLEIVEVLLKHGADVNAYDRAGWTP 108
Query: 462 LHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLL 509
LHLA G L +V L+KH D+N+++ LG T +I ++ +L
Sbjct: 109 LHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 559 LHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDVNIEN 615
L A G EV L+ + AD+ ++ +PLHLA A G ++++ +K DVN +
Sbjct: 11 LEAAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 616 DIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
G TPLH+A G LE V+ LL DVN + G T L A +L++VE+LL+
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 676 ADVNLGDG 683
ADVN D
Sbjct: 129 ADVNAQDA 136
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 616 DIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
D+G+ L A + G + V+ L+ DVN +G T L A + +L++VE+LL+
Sbjct: 5 DLGKKLLEAAAA-GQDDEVRILM-ANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Query: 676 ADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCN 734
ADVN D TPL+ A D L+I+++L+K+GADVN + A + TPLH A+ G
Sbjct: 63 ADVNASDSAGITPLHLAAY-DGHLEIVEVLLKHGADVNAYDRAGW--TPLHLAALSGQL- 118
Query: 735 DIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+I L++ AD+ ++ TA + + DL + L
Sbjct: 119 EIVEVLLKH-GADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 86.3 bits (212), Expect = 8e-17, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
Query: 740 LVEECNADITLRNFNN---RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSC 796
++ + D+ NF N +T L+ A N ++ + LL AG DP++ D + +PL +C
Sbjct: 27 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Query: 797 RQGLYEIVDTLLEYNADTNLRTI-----KHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
QG V L + +L +I +G T LH A+ H L I++LL+ AD+NA+
Sbjct: 87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 852 DK-YGKIAFHSACQAKNWDIVTFLLDAGSNIEKAT-----KYRMTF-ESSKVVEKHVAKL 904
+ G+ A H A +N D+V+ LL G+++ + T Y++T+ S +++ + +L
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Query: 905 RAANI 909
N+
Sbjct: 207 TLENL 211
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 40/173 (23%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMK 607
+N Q+N TPLH A++ NQ E+ L+ + D
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD--------------------------- 70
Query: 608 YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHK-----TKDGSTALFFACYD 662
+ + G TPLH+A GCL +V L + H +G T L A
Sbjct: 71 ---PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127
Query: 663 KRLDLVEILLEANADVNLGD--GTYTPLYTAL-MKDPSLDIIKMLVKYGADVN 712
L +VE+L+ ADVN + T L+ A+ +++P D++ +L+K GADVN
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP--DLVSLLLKCGADVN 178
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 16/184 (8%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKHID-----INSENDLGKTPIYFAIKNNHLEIFNLLLK 511
DG + LHLA A+ +++ + +N +N+L +TP++ A+ N EI LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMVSFLLS-------HIGVNLQDNKGCTPLHCAIV 564
G D ++ T LH+ACE + V L H + + G T LH A +
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Query: 565 GNQLEVFNHLINSNADITMYK---NDSPLHLACATGNMDMITYAMKY-FDVNIENDIGET 620
L + L++ AD+ + + LHLA N D+++ +K DVN G +
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 621 PLHV 624
P +
Sbjct: 187 PYQL 190
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 417 INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
+N Q+ TPL ++ E+ +++ AG D + + G T LHLAC G LA V
Sbjct: 38 LNFQNNLQQTPLHLAVITNQP-EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 96
Query: 477 LVK-------HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN-FTCLH 528
L + H + + N G T ++ A + +L I LL+ LGADV + N T LH
Sbjct: 97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156
Query: 529 VACEFASIEMVSFLL 543
+A + + ++VS LL
Sbjct: 157 LAVDLQNPDLVSLLL 171
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 74/177 (41%), Gaps = 30/177 (16%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+N QN TPLH+A EI + LL G D + G TPL A Q CL L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 380 VNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPL-TCSIKGQASL 438
C T H+ S +LK N N G T L SI G L
Sbjct: 98 -TQSC---------TTPHLHS----------ILKATNYN-----GHTCLHLASIHGY--L 130
Query: 439 EVFHSIIEAGADIKAKL-MDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTP 493
+ ++ GAD+ A+ +G TALHLA N +V+ L+K D+N G +P
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
T LH A ++ + +V+LL+ GA+ A E RTALH+A +++ D+V LL GA+
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-- 176
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKIL 346
VN G +P + R I + L
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQL 203
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 86.3 bits (212), Expect = 9e-17, Method: Composition-based stats.
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 35/172 (20%)
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQF 402
V+IL+ GAD+N+ +D G TPL H+A+
Sbjct: 30 VRILMANGADVNAHDDQGSTPL--------------------------------HLAAWI 57
Query: 403 GNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTA 461
G+ E+V LLKH ++N +D DGWTPL + LE+ +++ GAD+ A+ G T
Sbjct: 58 GHPEIVEVLLKHGADVNARDTDGWTPLHLAAD-NGHLEIVEVLLKYGADVNAQDAYGLTP 116
Query: 462 LHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
LHLA G+L +V L+KH D+N+++ GKT +I N + ++ +L KL
Sbjct: 117 LHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 84.3 bits (207), Expect = 3e-16, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
R +D R L+ AD+ + T L+ AA+ + ++++ LLK GAD + D
Sbjct: 23 RAGQDDEVRILMAN-GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW 81
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + G EIV+ LL+Y AD N + +G T LH AA L+I+++LLK+ AD+N
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQD-AYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFL 874
A+DK+GK AF + N D+ L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
++ GAD+ A G+T LHLA + G+ +V L+KH D+N+ + G TP++ A N H
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHC 561
LEI +LLK GADV + T LH+A + +E+V LL H VN QD G T
Sbjct: 93 LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 562 AI 563
+I
Sbjct: 153 SI 154
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D + ++PL + G EIV+ LL++ AD N R
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD- 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA + L+I+++LLKY AD+NA+D YG H A + +IV LL G+++
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 77.0 bits (188), Expect = 5e-14, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
L +A D E V++L+ GA+ A + T LH+AA + +IV++L +GA+ VN
Sbjct: 19 LEAARAGQDDE-VRILMANGADVNA-HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD--VN 74
Query: 322 VQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN 381
++ G TPLH+A LEIV++LL GAD+N+ + G TPL A + LE+ L+
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 382 HGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
HG D++ + +TA ++ GN ++ L K
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 76.3 bits (186), Expect = 9e-14, Method: Composition-based stats.
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYA 605
VN D++G TPLH A E+ L+ AD+ D +PLHLA G+++++
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+KY DVN ++ G TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 73.9 bits (180), Expect = 5e-13, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N D + TPLH A E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAHDD-----------QGSTPLHLAAWIGHPEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A + T LH+AA ++IV++L YGA+ VN Q+ GLTPLH+A
Sbjct: 65 VLLKHGADVNA-RDTDGWTPLHLAADNGHLEIVEVLLKYGAD--VNAQDAYGLTPLHLAA 121
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
R LEIV++LL GAD+N+ + G T +I
Sbjct: 122 DRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 70.1 bits (170), Expect = 7e-12, Method: Composition-based stats.
Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN GST L A + ++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
Query: 675 NADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D +TPL+ A + L+I+++L+KYGADVN + Y +TPLH A+ RG
Sbjct: 70 GADVNARDTDGWTPLHLA-ADNGHLEIVEVLLKYGADVNAQD--AYGLTPLHLAADRGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
+I L++ AD+ ++ +TA + + N DL + L K
Sbjct: 127 -EIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 69.7 bits (169), Expect = 7e-12, Method: Composition-based stats.
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN +D G TPLH+A G E V+ LL DVN + DG T L A + L++VE
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLK-HGADVNARDTDGWTPLHLAADNGHLEIVE 97
Query: 670 ILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D TPL+ A + L+I+++L+K+GADVN
Sbjct: 98 VLLKYGADVNAQDAYGLTPLHLAADRG-HLEIVEVLLKHGADVN 140
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G+D+ KL++ A G V L+ + D+N+ +D G TP++ A H EI
Sbjct: 11 GSDLGKKLLEAARA-------GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIV 63
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVG 565
+LLK GADV + +T LH+A + +E+V LL + VN QD G TPLH A
Sbjct: 64 EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR 123
Query: 566 NQLEVFNHLINSNADITMYKN--DSPLHLACATGNMDM 601
LE+ L+ AD+ + ++ GN D+
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A N +E+V++LL+ GA+ A + + T LH+AA ++IV++L +GA+
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNA-QDAYGLTPLHLAADRGHLEIVEVLLKHGAD-- 138
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKIL 346
VN Q+ G T I+ ++ +IL
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 86.3 bits (212), Expect = 9e-17, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
R +D R L+ AD+ + + T L+ AAF +L++++ LLK GAD + +D
Sbjct: 23 RAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM 81
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + G EIV+ LL+ AD N ++ G T LH AA L+I+++LLK AD+N
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADVNANDME-GHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFL 874
A+DK+GK AF + N D+ L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 4/129 (3%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN ++ +G TPLH+A LEIV++LL GAD+N+ + G TPL
Sbjct: 28 DEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLR 85
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKH-ININHQDKD 423
A LE+ L+ +G D++ + E T LH+A+ FG+LE+V LLK+ ++N QDK
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 424 GWTPLTCSI 432
G T SI
Sbjct: 146 GKTAFDISI 154
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 37/173 (21%)
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQF 402
V+IL+ GAD+N+ + G TPL H+A+
Sbjct: 30 VRILMANGADVNAEDASGWTPL--------------------------------HLAAFN 57
Query: 403 GNLEMVNYLLKH-ININHQDKDGWTPLT-CSIKGQASLEVFHSIIEAGADIKAKLMDGTT 460
G+LE+V LLK+ ++N D G TPL ++ G LE+ +++ GAD+ A M+G T
Sbjct: 58 GHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH--LEIVEVLLKNGADVNANDMEGHT 115
Query: 461 ALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
LHLA FG+L +V L+K+ D+N+++ GKT +I N + ++ +L KL
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 70.1 bits (170), Expect = 7e-12, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A N +E+V++LL+ GA+ A++ + T L +AA+ ++IV++L GA+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHA-GMTPLRLAALFGHLEIVEVLLKNGAD-- 105
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCT 362
VN ++ G TPLH+A LEIV++LL GAD+N+ + G T
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT 148
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G+D+ KL++ A G V L+ + D+N+E+ G TP++ A N HLEI
Sbjct: 11 GSDLGKKLLEAARA-------GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVG 565
+LLK GADV + T L +A F +E+V LL + VN D +G TPLH A +
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123
Query: 566 NQLEVFNHLINSNADITMYKN--DSPLHLACATGNMDM 601
LE+ L+ + AD+ + ++ GN D+
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITM--YKNDSPLHLACATGNMDMITYA 605
VN +D G TPLH A LE+ L+ + AD+ + +PL LA G+++++
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K DVN + G TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN E+ G TPLH+A +G LE V+ LL DVN G T L A L++VE
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVE 97
Query: 670 ILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D +TPL+ A M L+I+++L+K GADVN
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFG-HLEIVEVLLKNGADVN 140
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + G EIV+ LL+ AD N + H
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN--AVDH 78
Query: 822 -GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
G T L AA L+I+++LLK AD+NA D G H A + +IV LL G++
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 881 IEKATKYRMT 890
+ K+ T
Sbjct: 139 VNAQDKFGKT 148
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA 709
D L A R D V IL+ ADVN D + +TPL+ A + L+I+++L+K GA
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF-NGHLEIVEVLLKNGA 71
Query: 710 DVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLD 769
DVN + A MTPL A+ G +I L++ AD+ + T L+ AA +L+
Sbjct: 72 DVNAVDHAG--MTPLRLAALFGHL-EIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLE 127
Query: 770 LLKFLLKAGADPDILD 785
+++ LLK GAD + D
Sbjct: 128 IVEVLLKNGADVNAQD 143
Score = 59.7 bits (143), Expect = 9e-09, Method: Composition-based stats.
Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 8/163 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN + G T L A ++ L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 675 NADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D TPL A + L+I+++L+K GADVN + + TPLH A+ G
Sbjct: 70 GADVNAVDHAGMTPLRLAALFG-HLEIVEVLLKNGADVNANDMEGH--TPLHLAAMFGHL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
+I L++ AD+ ++ +TA + + N DL + L K
Sbjct: 127 -EIVEVLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
R +D R L+ AD+ + T L+ AA+ +L++++ LLK GAD D D+
Sbjct: 23 RAGQDDEVRILMAN-GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGY 81
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + G EIV+ LL+ AD N G T LH AA L+I+++LLK+ AD+N
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGADVNAMD-SDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFL 874
A+DK+GK AF + N D+ L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 82/141 (58%), Gaps = 4/141 (2%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A + + T LH+AA ++IV++L +GA+ V+ +V G TPLH+
Sbjct: 30 VRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGAD--VDASDVFGYTPLHL 86
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A LEIV++LL GAD+N+ + DG TPL A LE+ L+ HG D++ +
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 393 RTALHMASQFGNLEMVNYLLK 413
+TA ++ GN ++ L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 35/181 (19%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ ++ G TPL
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPL----------------------------- 51
Query: 394 TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
H+A+ G+LE+V LLKH +++ D G+TPL + LE+ +++ GAD+
Sbjct: 52 ---HLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAY-WGHLEIVEVLLKNGADVN 107
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
A DG T LHLA +G L +V L+KH D+N+++ GKT +I N + ++ +L K
Sbjct: 108 AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Query: 512 L 512
L
Sbjct: 168 L 168
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMITYA 605
VN DN G TPLH A LE+ L+ AD+ +PLHLA G+++++
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 606 MK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+K DVN + G TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+ ++ G TP++ A + HLEI +LLK GADV +T LH+A + +E+V
Sbjct: 39 DVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEV 98
Query: 542 LLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LL + VN D+ G TPLH A LE+ L+ AD+
Sbjct: 99 LLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 755 NRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADT 814
R L A G + D ++ L+ GAD + D T+PL + G EIV+ LL++ AD
Sbjct: 15 GRKLLEAARAGQD-DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 815 NLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
+ + G T LH AA+ L+I+++LLK AD+NA D G H A + +IV L
Sbjct: 74 DASDV-FGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 875 LDAGSNIEKATKYRMT 890
L G+++ K+ T
Sbjct: 133 LKHGADVNAQDKFGKT 148
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 40/191 (20%)
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A + D V IL+ ADVN D T TPL+ A L+I+++L+K+GADV+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYS-GHLEIVEVLLKHGADVDAS 76
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+ Y TPLH A+Y G +L++++ L
Sbjct: 77 DVFGY--TPLHLAAYWG-----------------------------------HLEIVEVL 99
Query: 775 LKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQ 834
LK GAD + +D +PL + + G EIV+ LL++ AD N + K G TA + +
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD-KFGKTAFDISIDNGN 158
Query: 835 LDIIKLLLKYN 845
D+ ++L K N
Sbjct: 159 EDLAEILQKLN 169
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
+ L A + + D ++L+ G +N D TPLH A + +E+V+
Sbjct: 16 RKLLEAARAGQDDEVRILMANGADVNAADN-----------TGTTPLHLAAYSGHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A T LH+AA ++IV++L GA+ VN + G+TPLH+A
Sbjct: 65 VLLKHGADVDA-SDVFGYTPLHLAAYWGHLEIVEVLLKNGAD--VNAMDSDGMTPLHLAA 121
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
+ LEIV++LL GAD+N+ + G T +I
Sbjct: 122 KWGYLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN ++ G TPLH+A G LE V+ LL DV+ G T L A Y L++VE
Sbjct: 39 DVNAADNTGTTPLHLAAYSGHLEIVEVLLK-HGADVDASDVFGYTPLHLAAYWGHLEIVE 97
Query: 670 ILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D TPL+ A K L+I+++L+K+GADVN
Sbjct: 98 VLLKNGADVNAMDSDGMTPLHLA-AKWGYLEIVEVLLKHGADVN 140
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G L A + G + V+ L+ DVN G+T L A Y L++VE+LL+
Sbjct: 12 SDLGRKLLEAARA-GQDDEVRILM-ANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 675 NADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADV+ D YTPL+ A L+I+++L+K GADVN + MTPLH A+ G
Sbjct: 70 GADVDASDVFGYTPLHLAAYW-GHLEIVEVLLKNGADVNAMDSDG--MTPLHLAAKWGYL 126
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
+I L++ AD+ ++ +TA + + N DL + L K
Sbjct: 127 -EIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDV 611
G L A G EV L+ + AD+ N +PLHLA +G+++++ +K+ DV
Sbjct: 15 GRKLLEAARAGQDDEV-RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
+ + G TPLH+A G LE V+ LL DVN DG T L A L++VE+L
Sbjct: 74 DASDVFGYTPLHLAAYWGHLEIVEVLLKN-GADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 672 LEANADVNLGD 682
L+ ADVN D
Sbjct: 133 LKHGADVNAQD 143
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N G+T LH AA+ L+I+++LLK+ AD++A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAAD-NTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT----------FESSKVVEKHV 901
D +G H A + +IV LL G+++ MT E +V+ KH
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Query: 902 AKLRAANIY 910
A + A + +
Sbjct: 137 ADVNAQDKF 145
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
R +D R L+ AD+ ++ T L+ +L++++ LLK AD + D
Sbjct: 23 RAGQDDEVRILMAN-GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW 81
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + +G EIV+ LL+Y AD N + G T LH AA L+I+++LLKY AD+N
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ-GYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFL 874
A+DK+GK AF + N D+ L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN + G TPLH+ V++G LE ++ LL DVN K G T L A Y L++VE
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYA-ADVNASDKSGWTPLHLAAYRGHLEIVE 97
Query: 670 ILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+LL+ ADVN D YTPL+ A +D L+I+++L+KYGADVN
Sbjct: 98 VLLKYGADVNAMDYQGYTPLHLA-AEDGHLEIVEVLLKYGADVN 140
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL G EI++ LL+Y AD N + K
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN-ASDKS 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA+ L+I+++LLKY AD+NA D G H A + + +IV LL G+++
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 882 EKATKYRMT 890
K+ T
Sbjct: 140 NAQDKFGKT 148
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 35/181 (19%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ + G TPL
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPL----------------------------- 51
Query: 394 TALHMASQFGNLEMVNYLLKHI-NINHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
H+ G+LE++ LLK+ ++N DK GWTPL + + LE+ +++ GAD+
Sbjct: 52 ---HLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAY-RGHLEIVEVLLKYGADVN 107
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
A G T LHLA G+L +V L+K+ D+N+++ GKT +I N + ++ +L K
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Query: 512 L 512
L
Sbjct: 168 L 168
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+ + G TP++ + N HLEI +LLK ADV KS +T LH+A +E+V
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEV 98
Query: 542 LLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LL + VN D +G TPLH A LE+ L+ AD+
Sbjct: 99 LLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH + N +E++++LL+ A+ A +KS T LH+AA ++IV++L YGA+
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKS-GWTPLHLAAYRGHLEIVEVLLKYGAD-- 105
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
VN + G TPLH+A LEIV++LL GAD+N+ + G T +I
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D G TPL + LE+ +++ AD+ A
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVN-NGHLEIIEVLLKYAADVNASDKS 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LHLA Y G+L +V L+K+ D+N+ + G TP++ A ++ HLEI +LLK GADV
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFL 542
+ K T ++ + + ++ L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A T LH+ ++I+++L Y A+ VN + +G TPLH+
Sbjct: 30 VRILMANGADVNA-NDWFGITPLHLVVNNGHLEIIEVLLKYAAD--VNASDKSGWTPLHL 86
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A R LEIV++LL GAD+N+ + G TPL A LE+ L+ +G D++ +
Sbjct: 87 AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 393 RTALHMASQFGNLEMVNYLLK 413
+TA ++ GN ++ L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYA 605
VN D G TPLH + LE+ L+ AD+ +PLHLA G+++++
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+KY DVN + G TPLH+A G LE V+ LL DVN + K G TA + +
Sbjct: 100 LKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGN 158
Query: 665 LDLVEILLEAN 675
DL EIL + N
Sbjct: 159 EDLAEILQKLN 169
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 666 DLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPL 724
D V IL+ ADVN D TPL+ ++ + L+II++L+KY ADVN ++++ + TPL
Sbjct: 28 DEVRILMANGADVNANDWFGITPLHL-VVNNGHLEIIEVLLKYAADVNASDKSGW--TPL 84
Query: 725 HYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDIL 784
H A+YRG + L + AD+ ++ T L+ AA +L++++ LLK GAD +
Sbjct: 85 HLAAYRGHLEIVEVLL--KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ 142
Query: 785 D 785
D
Sbjct: 143 D 143
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 588 SPLHLACATGNMDMITYAMKYF-DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+PLHL G++++I +KY DVN + G TPLH+A G LE V+ LL DVN
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY-GADVN 107
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
G T L A D L++VE+LL+ ADVN D
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 22/212 (10%)
Query: 258 TDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAE 317
++ PLH A + ++ V+ LL + L + R LH + ++ +I L
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKM 59
Query: 318 KSVNVQNV---AGLTPLHIACRRKCLEIVKILLDK--GADINSGNDDGCTPLFCAIAQNC 372
++VN+ + +G TP HIAC LE+VK L D+ D+N + G T L A+ +
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 373 LEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYL--LKHININHQDKDGWTPLT 429
EV +L+ +G + + + + LH A+ G+L+++ L L +N QDK GWTPL
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL- 178
Query: 430 CSIKGQASLEVFHSIIEAGADIKAKLMDGTTA 461
FH++ E D L++ A
Sbjct: 179 -----------FHALAEGHGDAAVLLVEKYGA 199
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 24/211 (11%)
Query: 522 SNFTCLHVAC---EFASIEMVSFLLSHIGVNLQ-DNKGCTPLHCAIVGNQLEVFNHLIN- 576
SN+ LH AC EF ++ L S + LQ D G PLH ++ E+ + L++
Sbjct: 2 SNYP-LHQACMENEFFKVQ--ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 58
Query: 577 -SNADITMYKNDS---PLHLACATGNMDMITYAMKYFDVNIENDI------GETPLHVAV 626
N ++ Y +DS P H+AC+ GN++++ +D ++ D+ G T LH+AV
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVK---SLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 627 SHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE-ANADVNLGDGT- 684
E +FL+ V K K L A L L+E+L + VN D
Sbjct: 116 GKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTN 715
+TPL+ AL + + ++ KYGA+ +L +
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 330 PLHIAC-RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV----NHGC 384
PLH AC + ++ ++L K + + + DG PL +++ E+ ++L+ N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 385 DLSVPEGERTALHMASQFGNLEMVNYLLKHI---NINHQDKDGWTPLTCSIKGQASLEVF 441
D + T H+A GNLE+V L ++N G T L ++ G+ EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV-GKKWFEVS 123
Query: 442 HSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYL--VKHIDINSENDLGKTPIYFAIK 499
+IE GA ++ K LH A G+L ++ L + +N ++ G TP++ A+
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 500 NNHLEIFNLLL-KLGAD 515
H + LL+ K GA+
Sbjct: 184 EGHGDAAVLLVEKYGAE 200
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAV---KMKSNFTCLHVACEFASIEMVSFLLSH- 545
G+ P+++++ EI + LL +V + S +T H+AC ++E+V L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 546 --IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDM 601
+N N+G T LH A+ EV LI + A + + N PLH A + G++ +
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 602 ITY--AMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLL 638
I + VN ++ G TPL A++ G +A L+
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 9/202 (4%)
Query: 621 PLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNL 680
PLH A V+ LL++K + K +DG L ++ + ++ LL +VNL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 681 ----GDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
D +TP + A +L+++K L +L +T LH A + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVG-NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFEV 122
Query: 737 ARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP-DILDLKDTSPLLSS 795
++FL+E A + +++ N+ L+ AA +L L++ L G + D + +PL +
Sbjct: 123 SQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 796 CRQGLYEIVDTLLE-YNADTNL 816
+G + L+E Y A+ +L
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDL 203
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 5/162 (3%)
Query: 723 PLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPD 782
PLH A + + L + + + ++ + R L+++ ++ FLL + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 783 ILDLKDTS---PLLSSCRQGLYEIVDTLLEYNADTNLRTI-KHGSTALHTAAFHNQLDII 838
+ D D S P +C G E+V +L + +L I G T LH A ++
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 839 KLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
+ L++ A + +DK+ +I H A + ++ L G +
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 24/207 (11%)
Query: 779 ADPDILDLKDTS---PLLSSCRQGLYEIVDTLLEYNADTNLRTIK--HGSTALHTAAFHN 833
+ P +L KD PL S +EI LL + NL G T H A
Sbjct: 24 SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83
Query: 834 QLDIIKLLL--KYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRM-- 889
L+++K L D+N G H A K +++ FL++ G+++ K+
Sbjct: 84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP 143
Query: 890 -----TFESSKVVEKHVAKLRAANIYVDKNIMVQFLTTQVNDFYEECLREVALLKCEKPG 944
+ S K++E ++A + DK E + A+L EK G
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-----LAEGHGDAAVLLVEKYG 198
Query: 945 DQEKVSFYDILSKHPAQVEFYAKNPQI 971
+ YD++ A+ E A N Q+
Sbjct: 199 AE-----YDLVDNKGAKAEDVALNEQV 220
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 22/212 (10%)
Query: 258 TDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAE 317
++ PLH A + ++ V+ LL + L + R LH + ++ +I L
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKM 59
Query: 318 KSVNVQNV---AGLTPLHIACRRKCLEIVKILLDK--GADINSGNDDGCTPLFCAIAQNC 372
++VN+ + +G TP HIAC LE+VK L D+ D+N + G T L A+ +
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 373 LEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYL--LKHININHQDKDGWTPLT 429
EV +L+ +G + + + + LH A+ G+L+++ L L +N QDK GWTPL
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL- 178
Query: 430 CSIKGQASLEVFHSIIEAGADIKAKLMDGTTA 461
FH++ E D L++ A
Sbjct: 179 -----------FHALAEGHGDAAVLLVEKYGA 199
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 24/211 (11%)
Query: 522 SNFTCLHVAC---EFASIEMVSFLLSHIGVNLQ-DNKGCTPLHCAIVGNQLEVFNHLIN- 576
SN+ LH AC EF ++ L S + LQ D G PLH ++ E+ + L++
Sbjct: 2 SNYP-LHQACMENEFFKVQ--ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 58
Query: 577 -SNADITMYKNDS---PLHLACATGNMDMITYAMKYFDVNIENDI------GETPLHVAV 626
N ++ Y +DS P H+AC+ GN++++ +D ++ D+ G T LH+AV
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVK---SLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 627 SHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE-ANADVNLGDGT- 684
E +FL+ V K K L A L L+E+L + VN D
Sbjct: 116 GKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTN 715
+TPL+ AL + + ++ KYGA+ +L +
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 330 PLHIAC-RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV----NHGC 384
PLH AC + ++ ++L K + + + DG PL +++ E+ ++L+ N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 385 DLSVPEGERTALHMASQFGNLEMVNYLLKHI---NINHQDKDGWTPLTCSIKGQASLEVF 441
D + T H+A GNLE+V L ++N G T L ++ G+ EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV-GKKWFEVS 123
Query: 442 HSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYL--VKHIDINSENDLGKTPIYFAIK 499
+IE GA ++ K LH A G+L ++ L + +N ++ G TP++ A+
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 500 NNHLEIFNLLL-KLGAD 515
H + LL+ K GA+
Sbjct: 184 EGHGDAAVLLVEKYGAE 200
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAV---KMKSNFTCLHVACEFASIEMVSFLLSH- 545
G+ P+++++ EI + LL +V + S +T H+AC ++E+V L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 546 --IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDM 601
+N N+G T LH A+ EV LI + A + + N PLH A + G++ +
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 602 ITY--AMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLL 638
I + VN ++ G TPL A++ G +A L+
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 9/202 (4%)
Query: 621 PLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNL 680
PLH A V+ LL++K + K +DG L ++ + ++ LL +VNL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 681 ----GDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
D +TP + A +L+++K L +L +T LH A + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVG-NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFEV 122
Query: 737 ARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP-DILDLKDTSPLLSS 795
++FL+E A + +++ N+ L+ AA +L L++ L G + D + +PL +
Sbjct: 123 SQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 796 CRQGLYEIVDTLLE-YNADTNL 816
+G + L+E Y A+ +L
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDL 203
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 5/162 (3%)
Query: 723 PLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPD 782
PLH A + + L + + + ++ + R L+++ ++ FLL + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 783 ILDLKDTS---PLLSSCRQGLYEIVDTLLEYNADTNLRTI-KHGSTALHTAAFHNQLDII 838
+ D D S P +C G E+V +L + +L I G T LH A ++
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 839 KLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
+ L++ A + +DK+ +I H A + ++ L G +
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 24/207 (11%)
Query: 779 ADPDILDLKDTS---PLLSSCRQGLYEIVDTLLEYNADTNLRTIK--HGSTALHTAAFHN 833
+ P +L KD PL S +EI LL + NL G T H A
Sbjct: 24 SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83
Query: 834 QLDIIKLLL--KYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRM-- 889
L+++K L D+N G H A K +++ FL++ G+++ K+
Sbjct: 84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP 143
Query: 890 -----TFESSKVVEKHVAKLRAANIYVDKNIMVQFLTTQVNDFYEECLREVALLKCEKPG 944
+ S K++E ++A + DK E + A+L EK G
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-----LAEGHGDAAVLLVEKYG 198
Query: 945 DQEKVSFYDILSKHPAQVEFYAKNPQI 971
+ YD++ A+ E A N Q+
Sbjct: 199 AE-----YDLVDNKGAKAEDVALNEQV 220
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 22/212 (10%)
Query: 258 TDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAE 317
++ PLH A + ++ V+ LL + L + R LH + ++ +I L
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKM 59
Query: 318 KSVNVQNV---AGLTPLHIACRRKCLEIVKILLDK--GADINSGNDDGCTPLFCAIAQNC 372
++VN+ + +G TP HIAC LE+VK L D+ D+N + G T L A+ +
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 373 LEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYL--LKHININHQDKDGWTPLT 429
EV +L+ +G + + + + LH A+ G+L+++ L L +N QDK GWTPL
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL- 178
Query: 430 CSIKGQASLEVFHSIIEAGADIKAKLMDGTTA 461
FH++ E D L++ A
Sbjct: 179 -----------FHALAEGHGDAAVLLVEKYGA 199
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 24/211 (11%)
Query: 522 SNFTCLHVAC---EFASIEMVSFLLSHIGVNLQ-DNKGCTPLHCAIVGNQLEVFNHLIN- 576
SN+ LH AC EF ++ L S + LQ D G PLH ++ E+ + L++
Sbjct: 2 SNYP-LHQACMENEFFKVQ--ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 58
Query: 577 -SNADITMYKNDS---PLHLACATGNMDMITYAMKYFDVNIENDI------GETPLHVAV 626
N ++ Y +DS P H+AC+ GN++++ +D ++ D+ G T LH+AV
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVK---SLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 627 SHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE-ANADVNLGDGT- 684
E +FL+ V K K L A L L+E+L + VN D
Sbjct: 116 GKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTN 715
+TPL+ AL + + ++ KYGA+ +L +
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 330 PLHIAC-RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV----NHGC 384
PLH AC + ++ ++L K + + + DG PL +++ E+ ++L+ N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 385 DLSVPEGERTALHMASQFGNLEMVNYLLKHI---NINHQDKDGWTPLTCSIKGQASLEVF 441
D + T H+A GNLE+V L ++N G T L ++ G+ EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV-GKKWFEVS 123
Query: 442 HSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYL--VKHIDINSENDLGKTPIYFAIK 499
+IE GA ++ K LH A G+L ++ L + +N ++ G TP++ A+
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 500 NNHLEIFNLLL-KLGAD 515
H + LL+ K GA+
Sbjct: 184 EGHGDAAVLLVEKYGAE 200
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAV---KMKSNFTCLHVACEFASIEMVSFLLSH- 545
G+ P+++++ EI + LL +V + S +T H+AC ++E+V L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 546 --IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDM 601
+N N+G T LH A+ EV LI + A + + N PLH A + G++ +
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 602 ITY--AMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLL 638
I + VN ++ G TPL A++ G +A L+
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 9/202 (4%)
Query: 621 PLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNL 680
PLH A V+ LL++K + K +DG L ++ + ++ LL +VNL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 681 ----GDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
D +TP + A +L+++K L +L +T LH A + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVG-NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFEV 122
Query: 737 ARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP-DILDLKDTSPLLSS 795
++FL+E A + +++ N+ L+ AA +L L++ L G + D + +PL +
Sbjct: 123 SQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 796 CRQGLYEIVDTLLE-YNADTNL 816
+G + L+E Y A+ +L
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDL 203
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 5/162 (3%)
Query: 723 PLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPD 782
PLH A + + L + + + ++ + R L+++ ++ FLL + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 783 ILDLKDTS---PLLSSCRQGLYEIVDTLLEYNADTNLRTI-KHGSTALHTAAFHNQLDII 838
+ D D S P +C G E+V +L + +L I G T LH A ++
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 839 KLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
+ L++ A + +DK+ +I H A + ++ L G +
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 24/207 (11%)
Query: 779 ADPDILDLKDTS---PLLSSCRQGLYEIVDTLLEYNADTNLRTIK--HGSTALHTAAFHN 833
+ P +L KD PL S +EI LL + NL G T H A
Sbjct: 24 SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83
Query: 834 QLDIIKLLL--KYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRM-- 889
L+++K L D+N G H A K +++ FL++ G+++ K+
Sbjct: 84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP 143
Query: 890 -----TFESSKVVEKHVAKLRAANIYVDKNIMVQFLTTQVNDFYEECLREVALLKCEKPG 944
+ S K++E ++A + DK E + A+L EK G
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-----LAEGHGDAAVLLVEKYG 198
Query: 945 DQEKVSFYDILSKHPAQVEFYAKNPQI 971
+ YD++ A+ E A N Q+
Sbjct: 199 AE-----YDLVDNKGAKAEDVALNEQV 220
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 769 DLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHT 828
D ++ L+ GAD + +D +PL + ++G EIV+ LL++ AD N R I G T LH
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI-WGRTPLHL 86
Query: 829 AAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
AA L+I+++LL+Y AD+NA+DK+GK AF + N D+ L
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN + AG+TPLH+A +R LEIV++LL GAD+N+ + G TPL
Sbjct: 28 DEVRILMANGAD--VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLH 85
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
A LE+ L+ +G D++ + +TA ++ GN ++ L K
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
++ GAD+ A G T LHLA G+L +V L+KH D+N+ + G+TP++ A H
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
LEI +LL+ GADV + K T ++ + + ++ L
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G+D+ KL++ T A G V L+ + D+N+ +D G TP++ A K HLEI
Sbjct: 11 GSDLGKKLLEATRA-------GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV 63
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAI 563
+LLK GADV + T LH+A +E+V LL + VN QD G T +I
Sbjct: 64 EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N G T LH AA L+I+++LLK+ AD+NA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
D +G+ H A + +IV LL+ G+++ K+ T
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D G TPL + K + LE+ +++ GAD+ A+ +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADVNARDIW 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
G T LHLA G+L +V L+++ D+N+++ GKT +I N + ++ +L KL
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN +D G TPLH+A G LE V+ LL DVN + G T L A L++VE
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNARDIWGRTPLHLAATVGHLEIVE 97
Query: 670 ILLEANADVNLGD 682
+LLE ADVN D
Sbjct: 98 VLLEYGADVNAQD 110
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 574 LINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGC 630
L+ + AD+ + +PLHLA G+++++ +K+ DVN + G TPLH+A + G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
LE V+ LL DVN + K G TA + + DL EIL + N
Sbjct: 93 LEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 38/147 (25%)
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
D +++L+ GADVN ++A +TPLH A+ RG
Sbjct: 28 DEVRILMANGADVNAMDDAG--VTPLHLAAKRG--------------------------- 58
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+L++++ LLK GAD + D+ +PL + G EIV+ LLEY AD N +
Sbjct: 59 --------HLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYN 845
K G TA + + D+ ++L K N
Sbjct: 111 -KFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMITYA 605
VN D+ G TPLH A LE+ L+ AD+ +PLHLA G+++++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHG 629
++Y DVN ++ G+T +++ +G
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNG 124
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 666 DLVEILLEANADVN-LGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPL 724
D V IL+ ADVN + D TPL+ A K L+I+++L+K+GADVN + + TPL
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLA-AKRGHLEIVEVLLKHGADVNARD--IWGRTPL 84
Query: 725 HYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
H A+ G + L E AD+ ++ +TA + + N DL + L K
Sbjct: 85 HLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 16/132 (12%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDK-GVPLNYSRRIIETDTPLHSAILNSDIELV 274
K L A + + D ++L+ G +N +D GV TPLH A +E+V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGV------------TPLHLAAKRGHLEIV 63
Query: 275 KLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIA 334
++LL+ GA+ A RT LH+AA V ++IV++L +YGA+ VN Q+ G T I+
Sbjct: 64 EVLLKHGADVNA-RDIWGRTPLHLAATVGHLEIVEVLLEYGAD--VNAQDKFGKTAFDIS 120
Query: 335 CRRKCLEIVKIL 346
++ +IL
Sbjct: 121 IDNGNEDLAEIL 132
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A G + V+ L+ DVN G T L A L++VE+LL+
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 675 NADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVN 712
ADVN D TPL+ A L+I+++L++YGADVN
Sbjct: 70 GADVNARDIWGRTPLHLAATVG-HLEIVEVLLEYGADVN 107
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + LD +PL + + G EIV+ LL+Y AD N
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED-NF 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
G T LH AA L+I+++LLK+ AD+NA+DK+GK AF + N D+ L
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN + GLTPLH+A + LEIV++LL GAD+N+ ++ G TPL
Sbjct: 28 DEVRILMANGAD--VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLH 85
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
A + LE+ L+ HG D++ + +TA ++ GN ++ L K
Sbjct: 86 LAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD+ A DG T LHLA G+L +V L+K+ D+N+E++ G TP++ A HLEI
Sbjct: 37 GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIV 96
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+LLK GADV + K T ++ + + ++ L
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A+++ T LH+AA + ++IV++L YGA+ VN ++ G+TPLH+
Sbjct: 30 VRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGAD--VNAEDNFGITPLHL 86
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
A R LEIV++LL GAD+N+ + G T +I
Sbjct: 87 AAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDV 611
G L A G EV L+ + AD+ D +PLHLA G+++++ +KY DV
Sbjct: 15 GKKLLEAARAGQDDEV-RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N E++ G TPLH+A G LE V+ LL DVN + K G TA + + DL EIL
Sbjct: 74 NAEDNFGITPLHLAAIRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 672 LEAN 675
+ N
Sbjct: 133 QKLN 136
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N + G T LH AA L+I+++LLKY AD+NAE
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALD-EDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
D +G H A + +IV LL G+++ K+ T
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D+DG TPL + + LE+ +++ GAD+ A+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQ-LGHLEIVEVLLKYGADVNAEDNF 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
G T LHLA G+L +V L+KH D+N+++ GKT +I N + ++ +L KL
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 36/148 (24%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A R + V+IL+ GAD+N+ ++DG TPL
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPL----------------------------- 51
Query: 394 TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADI 451
H+A+Q G+LE+V LLK+ ++N +D G TPL +I+G LE+ +++ GAD+
Sbjct: 52 ---HLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH--LEIVEVLLKHGADV 106
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVK 479
A+ G TA ++ GN + L K
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+ ++ G TP++ A + HLEI +LLK GADV + T LH+A +E+V
Sbjct: 39 DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEV 98
Query: 542 LLSH-IGVNLQDNKGCTPLHCAI 563
LL H VN QD G T +I
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISI 121
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH- 545
+DLGK + A E+ +L+ GADV + T LH+A + +E+V LL +
Sbjct: 12 SDLGKKLLEAARAGQDDEV-RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
VN +DN G TPLH A + LE+ L+ AD+
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN +DG T L A L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 675 NADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVN 712
ADVN D TPL+ A ++ L+I+++L+K+GADVN
Sbjct: 70 GADVNAEDNFGITPLHLAAIR-GHLEIVEVLLKHGADVN 107
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN ++ G TPLH+A G LE V+ LL DVN + G T L A L++VE
Sbjct: 39 DVNALDEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 670 ILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVK 706
+LL+ ADVN D + + + + D+ ++L K
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + + T L+ AA +L++++ LLK GAD + D
Sbjct: 21 AARAGQDDEVRILMAN-GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
+PL + +G EIV+ LL++ AD N + K G TA + + D+ ++L K N
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQD-KFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 76.6 bits (187), Expect = 6e-14, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 6/172 (3%)
Query: 547 GVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITY 604
VN+ +PLH A +G L L+ A + D +PL AC +G+ D +
Sbjct: 84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 143
Query: 605 AMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDK 663
+++ V E+D+ +P+H A G +E V L+ +++HK T L+ AC ++
Sbjct: 144 LLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGG-NIDHKISHLGTPLYLACENQ 201
Query: 664 RLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTN 715
+ V+ LLE+ ADVN G G +PL+ A+++ S ++ +L+ +GAD N
Sbjct: 202 QRACVKKLLESGADVNQGKGQDSPLH-AVVRTASEELACLLMDFGADTQAKN 252
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 20/222 (9%)
Query: 282 ANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLE 341
+NPL + + + +H AAI ++ L G +VN+ ++PLH AC L
Sbjct: 49 SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW--AVNIITADHVSPLHEACLGGHLS 106
Query: 342 IVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQ 401
VKILL GA +N D TPLF A + N L+ HG + + +H A++
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR 166
Query: 402 FGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI-KAKLMDG- 458
G++E VN L+ + NI+H+ TPL + + Q V ++E+GAD+ + K D
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV-KKLLESGADVNQGKGQDSP 225
Query: 459 ------TTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPI 494
T + LAC + D ++N GK P+
Sbjct: 226 LHAVVRTASEELACLLMDFGA--------DTQAKNAEGKRPV 259
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 241 NLVDKGVPLNYSRRIIETD--TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHV 298
NL+ +G +N II D +PLH A L + VK+LL+ GA + + T L
Sbjct: 77 NLISQGWAVN----IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFN 131
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGL-TPLHIACRRKCLEIVKILLDKGADINSGN 357
A + S D V LL +GA +VQ + L +P+H A RR +E V L+ G +I+
Sbjct: 132 ACVSGSWDCVNLLLQHGA----SVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187
Query: 358 DDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLL 412
TPL+ A L+ G D++ +G+ + LH + + E+ L+
Sbjct: 188 SHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLM 242
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Query: 713 LTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLK 772
L +A +P+H A+ G + R L+ + A + + ++ + L+ A G +L +K
Sbjct: 52 LMGDAVSDWSPMHEAAIHGHQLSL-RNLISQGWA-VNIITADHVSPLHEACLGGHLSCVK 109
Query: 773 FLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFH 832
LLK GA + + +PL ++C G ++ V+ LL++ A + ++ +H AA
Sbjct: 110 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--DLASPIHEAARR 167
Query: 833 NQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKA 884
++ + L+ Y +I+ + + + AC+ + V LL++G+++ +
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 219
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 8/198 (4%)
Query: 460 TALHLACYFGN-LAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAV 518
+ +H A G+ L++ N + + +N +P++ A HL +LLK GA V
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 519 KMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQ-DNKGCTPLHCAIVGNQLEVFNHLI-- 575
T L AC S + V+ LL H G ++Q ++ +P+H A +E N LI
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPESDLASPIHEAARRGHVECVNSLIAY 179
Query: 576 NSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAV 634
N D + +PL+LAC + ++ DVN + ++PLH AV E +
Sbjct: 180 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLH-AVVRTASEEL 237
Query: 635 KFLLNTKNIDVNHKTKDG 652
LL D K +G
Sbjct: 238 ACLLMDFGADTQAKNAEG 255
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A N +E+VKLLLE GA+ A +K+ RT LH+AA +++VKLL + GA+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGAD-- 60
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
VN ++ G TPLH+A R LE+VK+LL+ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
RT LH+AA +++VKLL + GA+ VN ++ G TPLH+A R LE+VK+LL+ GAD
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHG 383
+N+ + +G TPL A LEV L+ G
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G TPLH+A R LE+VK+LL+ GAD+N+ + +G TPL A LEV L+ G D+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 387 SVPEGE-RTALHMASQFGNLEMVNYLLK 413
+ + RT LH+A++ G+LE+V LL+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 70.5 bits (171), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + R G E+V LLE AD N + K+G T LH AA + L+++KLLL+ AD+N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFLLDAGS 879
A+DK G+ H A + + ++V LL+AG+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 423 DGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-I 481
+G TPL + + LEV ++EAGAD+ AK +G T LHLA G+L +V L++
Sbjct: 1 NGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA 514
D+N+++ G+TP++ A +N HLE+ LLL+ GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL-SHIGV 548
G+TP++ A +N HLE+ LLL+ GADV K K+ T LH+A +E+V LL + V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNA 579
N +D G TPLH A LEV L+ + A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G TPLH+A +G LE VK LL DVN K K+G T L A + L++V++LLEA AD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 678 VNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA 709
VN D TPL+ A ++ L+++K+L++ GA
Sbjct: 61 VNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGA 92
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
N RT L+ AA +L+++K LL+AGAD + D +PL + R G E+V LLE AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
N + K+G T LH AA + L+++KLLL+ A
Sbjct: 61 VNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+G T LHLA G+L +V L++ D+N+++ G+TP++ A +N HLE+ LLL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLL 543
V K K+ T LH+A +E+V LL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 588 SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+PLHLA G+++++ ++ DVN ++ G TPLH+A +G LE VK LL DVN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVN 62
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANA 676
K K+G T L A + L++V++LLEA A
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDV 611
G TPLH A LEV L+ + AD+ + +PLHLA G+++++ ++ DV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLL 638
N ++ G TPLH+A +G LE VK LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
TPLH A+ G ++ + L+E AD+ ++ N RT L+ AA +L+++K LL+AGAD
Sbjct: 4 TPLHLAARNGHL-EVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNA 812
+ D +PL + R G E+V LLE A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
+G T LH AA + L+++KLLL+ AD+NA+DK G+ H A + + ++V LL+AG++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 881 IEKATK 886
+ K
Sbjct: 61 VNAKDK 66
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 359 DGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKH-IN 416
+G TPL A LEV L+ G D++ + RT LH+A++ G+LE+V LL+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 417 INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGA 449
+N +DK+G TPL + + LEV ++EAGA
Sbjct: 61 VNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGA 92
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L A + ++ KLL++ G +N DK TPLH A N +E+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----------NGRTPLHLAARNGHLEV 50
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
VKLLLE GA+ A +K+ RT LH+AA +++VKLL + GA
Sbjct: 51 VKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA 709
+G T L A + L++V++LLEA ADVN D TPL+ A ++ L+++K+L++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGA 59
Query: 710 DVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
DVN ++ TPLH A+ G ++ + L+E
Sbjct: 60 DVNAKDKNG--RTPLHLAARNGHL-EVVKLLLE 89
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 769 DLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHT 828
D ++ L+ GAD + +D +PL + ++G EIV+ LL++ AD N I G T LH
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI-WGRTPLHL 86
Query: 829 AAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
AA L+I+++LL+Y AD+NA+DK+GK AF + N D+ L
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN + AG+TPLH+A +R LEIV++LL GAD+N+ + G TPL
Sbjct: 28 DEVRILMANGAD--VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLH 85
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
A LE+ L+ +G D++ + +TA ++ GN ++ L K
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
++ GAD+ A G T LHLA G+L +V L+KH D+N+ + G+TP++ A H
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
LEI +LL+ GADV + K T ++ + + ++ L
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N G T LH AA L+I+++LLK+ AD+NA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
D +G+ H A + +IV LL+ G+++ K+ T
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G+D+ KL++ T A G V L+ + D+N+ +D G TP++ A K HLEI
Sbjct: 11 GSDLGKKLLEATRA-------GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV 63
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAI 563
+LLK GADV T LH+A +E+V LL + VN QD G T +I
Sbjct: 64 EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D G TPL + K + LE+ +++ GAD+ A +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADVNASDIW 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
G T LHLA G+L +V L+++ D+N+++ GKT +I N + ++ +L KL
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 574 LINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGC 630
L+ + AD+ + +PLHLA G+++++ +K+ DVN + G TPLH+A + G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
LE V+ LL DVN + K G TA + + DL EIL + N
Sbjct: 93 LEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN +D G TPLH+A G LE V+ LL DVN G T L A L++VE
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDIWGRTPLHLAATVGHLEIVE 97
Query: 670 ILLEANADVNLGD 682
+LLE ADVN D
Sbjct: 98 VLLEYGADVNAQD 110
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 38/147 (25%)
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
D +++L+ GADVN ++A +TPLH A+ RG
Sbjct: 28 DEVRILMANGADVNAMDDAG--VTPLHLAAKRG--------------------------- 58
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+L++++ LLK GAD + D+ +PL + G EIV+ LLEY AD N +
Sbjct: 59 --------HLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYN 845
K G TA + + D+ ++L K N
Sbjct: 111 -KFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 666 DLVEILLEANADVN-LGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPL 724
D V IL+ ADVN + D TPL+ A K L+I+++L+K+GADVN ++ + TPL
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLA-AKRGHLEIVEVLLKHGADVNASD--IWGRTPL 84
Query: 725 HYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
H A+ G + L E AD+ ++ +TA + + N DL + L K
Sbjct: 85 HLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMITYA 605
VN D+ G TPLH A LE+ L+ AD+ +PLHLA G+++++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHG 629
++Y DVN ++ G+T +++ +G
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNG 124
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 16/132 (12%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDK-GVPLNYSRRIIETDTPLHSAILNSDIELV 274
K L A + + D ++L+ G +N +D GV TPLH A +E+V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGV------------TPLHLAAKRGHLEIV 63
Query: 275 KLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIA 334
++LL+ GA+ A + RT LH+AA V ++IV++L +YGA+ VN Q+ G T I+
Sbjct: 64 EVLLKHGADVNASD-IWGRTPLHLAATVGHLEIVEVLLEYGAD--VNAQDKFGKTAFDIS 120
Query: 335 CRRKCLEIVKIL 346
++ +IL
Sbjct: 121 IDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A G + V+ L+ DVN G T L A L++VE+LL+
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 675 NADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVN 712
ADVN D TPL+ A L+I+++L++YGADVN
Sbjct: 70 GADVNASDIWGRTPLHLAATVG-HLEIVEVLLEYGADVN 107
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 547 GVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITY 604
VN+ +PLH A +G L L+ A + D +PL AC +G+ D +
Sbjct: 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 87
Query: 605 AMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDK 663
+++ V E+D+ +P+H A G +E V L+ +++HK T L+ AC ++
Sbjct: 88 LLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGG-NIDHKISHLGTPLYLACENQ 145
Query: 664 RLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTN 715
+ V+ LLE+ ADVN G G +PL+ A+ + S ++ +L+ +GAD N
Sbjct: 146 QRACVKKLLESGADVNQGKGQDSPLH-AVARTASEELACLLMDFGADTQAKN 196
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 18/185 (9%)
Query: 319 SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNY 378
+VN+ ++PLH AC L VKILL GA +N D TPLF A + N
Sbjct: 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 87
Query: 379 LVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQAS 437
L+ HG + + +H A++ G++E VN L+ + NI+H+ TPL + + Q
Sbjct: 88 LLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR 147
Query: 438 LEVFHSIIEAGADI-KAKLMDG-------TTALHLACYFGNLAMVNYLVKHIDINSENDL 489
V ++E+GAD+ + K D T + LAC + D ++N
Sbjct: 148 ACV-KKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGA--------DTQAKNAE 198
Query: 490 GKTPI 494
GK P+
Sbjct: 199 GKRPV 203
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 12/207 (5%)
Query: 425 WTPL-TCSIKG-QASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-I 481
W+P+ +I G Q SL ++I G + D + LH AC G+L+ V L+KH
Sbjct: 4 WSPMHEAAIHGHQLSLR---NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTC-LHVACEFASIEMVS 540
+N TP++ A + + NLLL+ GA +V+ +S+ +H A +E V+
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA--SVQPESDLASPIHEAARRGHVECVN 118
Query: 541 FLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK-NDSPLHLACATGN 598
L+++ G ++ + + TPL+ A Q L+ S AD+ K DSPLH T +
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTAS 178
Query: 599 MDMITYAMKY-FDVNIENDIGETPLHV 624
++ M + D +N G+ P+ +
Sbjct: 179 EELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 9/199 (4%)
Query: 620 TPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN 679
+P+H A HG +++ L+ ++ VN T D + L AC L V+ILL+ A VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 680 -LGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIAR 738
+ +TPL+ A + S D + +L+++GA V ++ +P+H A+ RG +
Sbjct: 64 GVTADWHTPLFNACVSG-SWDCVNLLLQHGASVQPESDLA---SPIHEAARRGHVECVNS 119
Query: 739 FLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQ 798
+ N D + + T L A +K LL++GAD + +D SPL + R
Sbjct: 120 LIAYGGNIDHKISHLG--TPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVART 176
Query: 799 GLYEIVDTLLEYNADTNLR 817
E+ L+++ ADT +
Sbjct: 177 ASEELACLLMDFGADTQAK 195
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 12/175 (6%)
Query: 241 NLVDKGVPLNYSRRIIETD--TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHV 298
NL+ +G +N II D +PLH A L + VK+LL+ GA + + T L
Sbjct: 21 NLISQGWAVN----IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFN 75
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGL-TPLHIACRRKCLEIVKILLDKGADINSGN 357
A + S D V LL +GA +VQ + L +P+H A RR +E V L+ G +I+
Sbjct: 76 ACVSGSWDCVNLLLQHGA----SVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 131
Query: 358 DDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLL 412
TPL+ A L+ G D++ +G+ + LH ++ + E+ L+
Sbjct: 132 SHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLM 186
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
+P+H A+ G + R L+ + A + + ++ + L+ A G +L +K LLK GA
Sbjct: 5 SPMHEAAIHGHQLSL-RNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
+ + +PL ++C G ++ V+ LL++ A + ++ +H AA ++ + L
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSL 120
Query: 842 LKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKA 884
+ Y +I+ + + + AC+ + V LL++G+++ +
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 163
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 4/193 (2%)
Query: 329 TPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLS- 387
+P+H A ++ L+ +G +N D +PL A L L+ HG ++
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 388 VPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEA 447
V T L A G+ + VN LL+H + D +P+ + + + +E +S+I
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSLIAY 123
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G +I K+ T L+LAC A V L++ D+N + +P++ + E+
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELA 182
Query: 507 NLLLKLGADVAVK 519
LL+ GAD K
Sbjct: 183 CLLMDFGADTQAK 195
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 8/202 (3%)
Query: 456 MDGTTALHLACYFGN-LAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA 514
M + +H A G+ L++ N + + +N +P++ A HL +LLK GA
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 515 DVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQ-DNKGCTPLHCAIVGNQLEVFNH 573
V T L AC S + V+ LL H G ++Q ++ +P+H A +E N
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPESDLASPIHEAARRGHVECVNS 119
Query: 574 LI--NSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGC 630
LI N D + +PL+LAC + ++ DVN + ++PLH AV+
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLH-AVARTA 177
Query: 631 LEAVKFLLNTKNIDVNHKTKDG 652
E + LL D K +G
Sbjct: 178 SEELACLLMDFGADTQAKNAEG 199
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 786 LKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
+ D SP+ + G + L+ N+ T H S LH A L +K+LLK+
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS-PLHEACLGGHLSCVKILLKHG 59
Query: 846 ADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIE 882
A +N +AC + +WD V LL G++++
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
Score = 36.6 bits (83), Expect = 0.080, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 250 NYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNR-TALHVAAIVESVDIV 308
N +I TPL+ A N VK LLE GA+ + + + + + LH A S ++
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGAD---VNQGKGQDSPLHAVARTASEELA 182
Query: 309 KLLFDYGAEKSVNVQNVAGLTPLHI 333
LL D+GA+ +N G P+ +
Sbjct: 183 CLLMDFGAD--TQAKNAEGKRPVEL 205
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 16/228 (7%)
Query: 656 LFFACYDKRLDLVEILLE--------ANADVNLGDGTYT-PLYTALMKDPSLDIIKMLVK 706
L A D L++V LLE A V+ D + PL P+ + +
Sbjct: 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA 74
Query: 707 YGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGN 766
G VN+T++ +PLH A+ G + I L NA RN + L+ A
Sbjct: 75 SGLGVNVTSQD--GSSPLHVAALHGRADLIPLLLKHGANAGA--RNADQAVPLHLACQQG 130
Query: 767 NLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTAL 826
+ ++K LL + A P+ DL +PL+ +C G +E+V LL++ A N K G+TAL
Sbjct: 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK-GNTAL 189
Query: 827 HTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
H A + +++LLL + A + +K + A C +N I+ L
Sbjct: 190 HEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD--CAEQNSKIMELL 235
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 748 ITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTL 807
+ + + + + L+ AA DL+ LLK GA+ + PL +C+QG +++V L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 808 LEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKN 867
L+ NA N + + G+T L A +++ LLL++ A INA + G A H A K+
Sbjct: 139 LDSNAKPNKKDLS-GNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKH 197
Query: 868 WDIVTFLLDAGSNIEKATKYRMTF-----ESSKVVE 898
+V LL G++++ K + T ++SK++E
Sbjct: 198 VFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIME 233
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 11/211 (5%)
Query: 403 GNLEMVNYLLKHI---------NINHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKA 453
G+LEMV YLL+ ++ D + PL K + + + +G +
Sbjct: 22 GDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV 81
Query: 454 KLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
DG++ LH+A G ++ L+KH + + N P++ A + H ++ LL
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 513 GADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVF 571
A K S T L AC E+V+ LL H +N +NKG T LH A++ + V
Sbjct: 142 NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVV 201
Query: 572 NHLINSNADITMYKNDSPLHLACATGNMDMI 602
L+ A + + + CA N ++
Sbjct: 202 ELLLLHGASVQVLNKRQRTAVDCAEQNSKIM 232
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
+PLH A L+ +L+ LLL+ GAN A + LH+A +VK L D A+
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGHFQVVKCLLDSNAKP- 145
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
N ++++G TPL AC E+V +LL GA IN+ N+ G T L A+ + + V L
Sbjct: 146 -NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204
Query: 380 VNHGCDLSV-PEGERTALHMASQ 401
+ HG + V + +RTA+ A Q
Sbjct: 205 LLHGASVQVLNKRQRTAVDCAEQ 227
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 18/196 (9%)
Query: 536 IEMVSFLLSHIGVNLQDNKG---------CTPL----HCAIVGNQLEVFNHLINSNADIT 582
+EMV +LL +L+D + C PL CA +L ++T
Sbjct: 24 LEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP-ASGLGVNVT 82
Query: 583 MYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTK 641
SPLH+A G D+I +K+ + N PLH+A G + VK LL++
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS- 141
Query: 642 NIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTY-TPLYTALMKDPSLDI 700
N N K G+T L +AC +LV +LL+ A +N + T L+ A++ + + +
Sbjct: 142 NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI-EKHVFV 200
Query: 701 IKMLVKYGADVNLTNE 716
+++L+ +GA V + N+
Sbjct: 201 VELLLLHGASVQVLNK 216
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 531 CEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS-- 588
C A + S +GVN+ G +PLH A + + ++ L+ A+ D
Sbjct: 62 CAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAV 121
Query: 589 PLHLACATGNMDMITYAMKYFDVNIENDI-GETPLHVAVSHGCLEAVKFLLNTKNIDVNH 647
PLHLAC G+ ++ + + D+ G TPL A S G E V LL +N
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINA 180
Query: 648 KTKDGSTALFFACYDKRLDLVEILLEANADVNL 680
G+TAL A +K + +VE+LL A V +
Sbjct: 181 SNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 749 TLRNFNNRTALNFAAFGNNLDLLKFLLK-------------AGADPDILDLKDTSPLLSS 795
T +++ L A +L+++++LL+ + ADP+ P +
Sbjct: 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAP 64
Query: 796 CRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG 855
++ L ++ + L N T + GS+ LH AA H + D+I LLLK+ A+ A +
Sbjct: 65 AQKRLAKVPASGLGVNV-----TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ 119
Query: 856 KIAFHSACQAKNWDIVTFLLDAGSNIEK 883
+ H ACQ ++ +V LLD+ + K
Sbjct: 120 AVPLHLACQQGHFQVVKCLLDSNAKPNK 147
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 350 GADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTA-LHMASQFGNLEMV 408
G +N + DG +PL A ++ L+ HG + ++ LH+A Q G+ ++V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 409 NYLL-KHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACY 467
LL + N +D G TPL + G E+ +++ GA I A G TALH A
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSG-GHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 468 FGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLL 509
++ +V L+ H + N +T + A +N+ +I LL
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS--KIMELL 235
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 789 TSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADI 848
+SPL + G +++ LL++ A+ R + LH A ++K LL NA
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQ-AVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 849 NAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMTFESSKVVEKHV 901
N +D G AC + ++V LL G++I + T V+EKHV
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 769 DLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHT 828
D ++ L+ GAD + +D +PL + ++G EIV+ LL++ AD N + G T LH
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPLHL 86
Query: 829 AAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
AA L+I+++LL+Y AD+NA+DK+GK AF + N D+ L
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.6 bits (161), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN + AG+TPLH+A +R LEIV++LL GAD+N+ + G TPL
Sbjct: 28 DEVRILMANGAD--VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLH 85
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
A LE+ L+ +G D++ + +TA ++ GN ++ L K
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
++ GAD+ A G T LHLA G+L +V L+KH D+N+ + G+TP++ A H
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
LEI +LL+ GADV + K T ++ + + ++ L
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N G T LH AA L+I+++LLK+ AD+NA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
D +G+ H A + +IV LL+ G+++ K+ T
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G+D+ KL++ T A G V L+ + D+N+ +D G TP++ A K HLEI
Sbjct: 11 GSDLGKKLLEATRA-------GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV 63
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAI 563
+LLK GADV T LH+A +E+V LL + VN QD G T +I
Sbjct: 64 EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 574 LINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGC 630
L+ + AD+ + +PLHLA G+++++ +K+ DVN + G TPLH+A + G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
LE V+ LL DVN + K G TA + + DL EIL + N
Sbjct: 93 LEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D G TPL + K + LE+ +++ GAD+ A
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADVNASDSW 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
G T LHLA G+L +V L+++ D+N+++ GKT +I N + ++ +L KL
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN +D G TPLH+A G LE V+ LL DVN G T L A L++VE
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDSWGRTPLHLAATVGHLEIVE 97
Query: 670 ILLEANADVNLGD 682
+LLE ADVN D
Sbjct: 98 VLLEYGADVNAQD 110
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 16/132 (12%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDK-GVPLNYSRRIIETDTPLHSAILNSDIELV 274
K L A + + D ++L+ G +N +D GV TPLH A +E+V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGV------------TPLHLAAKRGHLEIV 63
Query: 275 KLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIA 334
++LL+ GA+ A + S RT LH+AA V ++IV++L +YGA+ VN Q+ G T I+
Sbjct: 64 EVLLKHGADVNASD-SWGRTPLHLAATVGHLEIVEVLLEYGAD--VNAQDKFGKTAFDIS 120
Query: 335 CRRKCLEIVKIL 346
++ +IL
Sbjct: 121 IDNGNEDLAEIL 132
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 666 DLVEILLEANADVN-LGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPL 724
D V IL+ ADVN + D TPL+ A K L+I+++L+K+GADVN ++ + TPL
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLA-AKRGHLEIVEVLLKHGADVNASDS--WGRTPL 84
Query: 725 HYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
H A+ G + L E AD+ ++ +TA + + N DL + L K
Sbjct: 85 HLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKN--DSPLHLACATGNMDMITYA 605
VN D+ G TPLH A LE+ L+ AD+ + +PLHLA G+++++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHG 629
++Y DVN ++ G+T +++ +G
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNG 124
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 38/147 (25%)
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
D +++L+ GADVN ++A +TPLH A+ RG
Sbjct: 28 DEVRILMANGADVNAMDDAG--VTPLHLAAKRG--------------------------- 58
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+L++++ LLK GAD + D +PL + G EIV+ LLEY AD N +
Sbjct: 59 --------HLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYN 845
K G TA + + D+ ++L K N
Sbjct: 111 -KFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A G + V+ L+ DVN G T L A L++VE+LL+
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 675 NADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVN 712
ADVN D TPL+ A L+I+++L++YGADVN
Sbjct: 70 GADVNASDSWGRTPLHLAATVG-HLEIVEVLLEYGADVN 107
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 8/190 (4%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSE--NDLGKTPIYFAIKNN 501
++EAG D++ + T LH A + +V Y + I + DL TP+++A +
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 502 HLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPL- 559
HL + L+K GAD ++ +C+H+A +F +V++L++ V++ D G TPL
Sbjct: 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147
Query: 560 HCAIVGNQLEVFNHLINSNADITM---YKNDSPLHLACATGNMDMITYAMKY-FDVNIEN 615
A + ++ L+ N + + Y ++ LH A GN +I+ ++ +V+ +N
Sbjct: 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN 207
Query: 616 DIGETPLHVA 625
GE+ L +A
Sbjct: 208 IKGESALDLA 217
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 38/254 (14%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
A +G E + L+ DV K+ T L +A + R+DLV+ + A V+
Sbjct: 16 ATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD----- 69
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEEC 744
+ G D+N TPLH+A+ +G + + + + +
Sbjct: 70 ---------------------QLGGDLN--------STPLHWATRQGHLSMVVQLM--KY 98
Query: 745 NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLL-SSCRQGLYEI 803
AD +L + + ++ AA + ++ +L+ G D D++D +PL+ ++ R +
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 804 VDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSAC 863
LL +N NL H +TALH A +I LLL+ A+++A++ G+ A A
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Query: 864 QAKNWDIVTFLLDA 877
Q KN ++ L +A
Sbjct: 219 QRKNVWMINHLQEA 232
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 99/228 (43%), Gaps = 46/228 (20%)
Query: 257 ETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
E T LH A +N+ I+LVK + KGA + N T LH A + +V L YGA
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN----- 371
+ S + + G + +H+A + IV L+ KG D++ + +G TPL A +
Sbjct: 101 DPS--LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 372 --CLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLT 429
L FN VN G + TALH A GN +++ LL
Sbjct: 159 TRLLLTFNVSVNLGDKYH----KNTALHWAVLAGNTTVISLLL----------------- 197
Query: 430 CSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYL 477
EAGA++ A+ + G +AL LA N+ M+N+L
Sbjct: 198 ----------------EAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 6/183 (3%)
Query: 702 KMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNF 761
+ LV+ G DV ++ +T LH+A+ D+ ++ + + L N T L++
Sbjct: 26 RELVEAGYDVRQPDKEN--VTLLHWAAINNRI-DLVKYYISKGAIVDQLGGDLNSTPLHW 82
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
A +L ++ L+K GADP ++D + S + + + G IV L+ D ++ ++
Sbjct: 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD-QN 141
Query: 822 GSTALHTAAFH-NQLDIIKLLLKYNADINAEDKYGK-IAFHSACQAKNWDIVTFLLDAGS 879
G T L AA+ + +D +LLL +N +N DKY K A H A A N +++ LL+AG+
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201
Query: 880 NIE 882
N++
Sbjct: 202 NVD 204
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 18/218 (8%)
Query: 367 AIAQNCLEVFNYLVNHGCDLSVPEGER-TALHMASQFGNLEMVNYLLKHININHQ---DK 422
I + C E LV G D+ P+ E T LH A+ +++V Y + I Q D
Sbjct: 20 GIYERCRE----LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 423 DGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHI 481
+ TPL + + Q L + +++ GAD +G + +HLA FG+ ++V YL+ K
Sbjct: 76 NS-TPLHWATR-QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 482 DINSENDLGKTPIYFAIKNNH-LEIFNLLLKLGADVAVKMKSNF---TCLHVACEFASIE 537
D++ + G TP+ +A H ++ LLL +V+V + + T LH A +
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF--NVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 538 MVSFLL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHL 574
++S LL + V+ Q+ KG + L A + + NHL
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 33/148 (22%)
Query: 743 ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYE 802
E D+ + N T L++AA N +DL+K+ + GA
Sbjct: 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA----------------------- 66
Query: 803 IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
IVD L D N ST LH A L ++ L+KY AD + D G H A
Sbjct: 67 IVDQL---GGDLN-------STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116
Query: 863 CQAKNWDIVTFLLDAGSNIEKATKYRMT 890
Q + IV +L+ G +++ + MT
Sbjct: 117 AQFGHTSIVAYLIAKGQDVDMMDQNGMT 144
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D K +PL + EIV+ LL++ AD N
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD-ND 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
GST LH AA L+I+++LLK+ AD+NA+DK+GK AF + N D+ L
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGND 358
AA D V++L GA+ VN + G TPLH+A LEIV++LL GAD+N+ ++
Sbjct: 21 AARAGQDDEVRILMANGAD--VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN 78
Query: 359 DGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
DG TPL A LE+ L+ HG D++ + +TA ++ GN ++ L K
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N D+ G TPL + LE+ +++ GAD+ A D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAAD-YDHLEIVEVLLKHGADVNAHDND 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
G+T LHLA FG+L +V L+KH D+N+++ GKT +I N + ++ +L KL
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD+ A G T LHLA + +L +V L+KH D+N+ ++ G TP++ A HLEI
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIV 96
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+LLK GADV + K T ++ + + ++ L
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N K G+T LH AA ++ L+I+++LLK+ AD+NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRK-GNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
D G H A + +IV LL G+++ K+ T
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+ + G TP++ A +HLEI +LLK GADV T LH+A F +E+V
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 542 LLSH-IGVNLQDNKGCTPLHCAI 563
LL H VN QD G T +I
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISI 121
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA+ A ++ N T LH+AA + ++IV++L +GA+ VN + G TPLH+
Sbjct: 30 VRILMANGADVNANDRKGN-TPLHLAADYDHLEIVEVLLKHGAD--VNAHDNDGSTPLHL 86
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
A LEIV++LL GAD+N+ + G T +I
Sbjct: 87 AALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYA 605
VN D KG TPLH A + LE+ L+ AD+ + ND +PLHLA G+++++
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHGCLEAVKFL 637
+K+ DVN ++ G+T +++ +G + + L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITM--YKNDSPLHLACATGNMDMITYAMKY-FDV 611
G L A G EV L+ + AD+ K ++PLHLA +++++ +K+ DV
Sbjct: 15 GKKLLEAARAGQDDEV-RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N ++ G TPLH+A G LE V+ LL DVN + K G TA + + DL EIL
Sbjct: 74 NAHDNDGSTPLHLAALFGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 672 LEAN 675
+ N
Sbjct: 133 QKLN 136
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 593 ACATGNMDMITYAM-KYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKD 651
A G D + M DVN + G TPLH+A + LE V+ LL DVN D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLL-KHGADVNAHDND 79
Query: 652 GSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVK 706
GST L A L++VE+LL+ ADVN D + + + + D+ ++L K
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN + G+T L A L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 675 NADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVN 712
ADVN D TPL+ A + L+I+++L+K+GADVN
Sbjct: 70 GADVNAHDNDGSTPLHLAALF-GHLEIVEVLLKHGADVN 107
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + T L+ AA ++L++++ LLK GAD + D
Sbjct: 21 AARAGQDDEVRILMANG-ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
++PL + G EIV+ LL++ AD N + K G TA + + D+ ++L K N
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQD-KFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N D+ + +TPLH A +E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNANDR-----------KGNTPLHLAADYDHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A + T LH+AA+ ++IV++L +GA+ VN Q+ G T I+
Sbjct: 65 VLLKHGADVNA-HDNDGSTPLHLAALFGHLEIVEVLLKHGAD--VNAQDKFGKTAFDISI 121
Query: 336 RRKCLEIVKIL 346
++ +IL
Sbjct: 122 DNGNEDLAEIL 132
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 113/262 (43%), Gaps = 50/262 (19%)
Query: 240 LNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVA 299
L L+++G +NY+ ++ T LH A ++ ++++VK L+E GAN
Sbjct: 57 LRLLERGADINYAN--VDGLTALHQACIDDNVDMVKFLVENGAN---------------- 98
Query: 300 AIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDD 359
+N + G PLH A L+I + L+ +GA + + N +
Sbjct: 99 --------------------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138
Query: 360 GCTPLFCAIAQNCLEVFNYLVN-HGCDLSVP--EGERTALHMASQFGNLEMVNYLLKHIN 416
G TPL A + E+ VN G D+ E ER L A Q+ N HIN
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLN-------SGHIN 191
Query: 417 INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
K G T L + + EV +I+A D+ K DG T LH A ++G
Sbjct: 192 DVRHAKSGGTALHVA-AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
Query: 477 LVKHI-DINSENDLGKTPIYFA 497
LV+++ D+ + N +G+T A
Sbjct: 251 LVENLCDMEAVNKVGQTAFDVA 272
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE- 392
AC E V LL++GADIN N DG T L A + +++ +LV +G +++ P+ E
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
LH A+ G L++ YL+ ++ + +G TPL + + + + + G DI
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 452 K-AKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
+ A+ + L A + N +N V+H G T ++ A + E+ LL+
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHIND-VRHAKS------GGTALHVAAAKGYTEVLKLLI 219
Query: 511 KLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHI 546
+ DV +K +T LH A + E L+ ++
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 17/243 (6%)
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVNLG--DGTYTPLYTALMKDPSLDIIKMLVKYG 708
D AC + V LLE AD+N DG T L+ A + D ++D++K LV+ G
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDG-LTALHQACIDD-NVDMVKFLVENG 96
Query: 709 ADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNL 768
A++N + + PLH A+ G DIA +L+ + A + N T L+ A
Sbjct: 97 ANINQPDNEGW--IPLHAAASCGYL-DIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAME 152
Query: 769 DLLKFLL-KAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
+LL+ + + G D + ++ +L RQ L ++R K G TALH
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQ--------WLNSGHINDVRHAKSGGTALH 204
Query: 828 TAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKY 887
AA +++KLL++ D+N +D G H+A + L++ ++E K
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264
Query: 888 RMT 890
T
Sbjct: 265 GQT 267
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 115/258 (44%), Gaps = 30/258 (11%)
Query: 624 VAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDG 683
A S G E V LL + D+N+ DG TAL AC D +D+V+ L+E A++N D
Sbjct: 46 AACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 684 T-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
+ PL+ A LDI + L+ GA V N TPL + E
Sbjct: 105 EGWIPLHAA-ASCGYLDIAEYLISQGAHVGAVNSEGD--TPLD--------------IAE 147
Query: 743 ECNADITLRNFNNRTALNFAAFGNNLDLL-----KFLLKAGADPDILDLKDTSPLLS-SC 796
E + L+N NR ++ A + + + L +G D+ K L +
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA 207
Query: 797 RQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGK 856
+G E++ L++ D N++ G T LH AA + + ++L++ D+ A +K G+
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYD-GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266
Query: 857 IAFHSACQAKNWDIVTFL 874
AF A + DI+ +L
Sbjct: 267 TAFDVADE----DILGYL 280
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 23/227 (10%)
Query: 457 DGTTALHLACYFGNLAMV-NYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
DG L AC G+ V L + DIN N G T ++ A ++++++ L++ GA+
Sbjct: 40 DGAVFL-AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLS---HIGVNLQDNKGCTPLHCAIVGNQLEVFN 572
+ + LH A +++ +L+S H+G +++G TPL A E+
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA--VNSEGDTPLDIAEEEAMEELLQ 156
Query: 573 HLINSNA-DITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDI-----GETPLHVAV 626
+ +N DI + + M+ A ++ + ND+ G T LHVA
Sbjct: 157 NEVNRQGVDIEAARKEE---------ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA 207
Query: 627 SHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE 673
+ G E +K L+ + DVN K DG T L A + + + IL+E
Sbjct: 208 AKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 257 ETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
+ +TPLH+A N E VK LL KGA+ A K N T LH+AA +IVKLL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLAKGA 66
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINS 355
+ VN ++ G TP H+A + EIVK+L KGAD+N+
Sbjct: 67 D--VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 422 KDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KH 480
KDG TPL + K + EV ++ GAD+ A+ DG T LHLA G+ +V L+ K
Sbjct: 7 KDGNTPLHNAAKNGHAEEVK-KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 481 IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVK 519
D+N+ + G TP + A KN H EI LL GADV +
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G TPLH A +G E VK LL +K DVN ++KDG+T L A + ++V++LL AD
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 678 VNL--GDGTYTPLYTALMKDPSLDIIKMLVKYGADVN 712
VN DG TP + A K+ +I+K+L GADVN
Sbjct: 68 VNARSKDGN-TPEHLA-KKNGHHEIVKLLDAKGADVN 102
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 294 TALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADI 353
T LH AA + VK L GA+ VN ++ G TPLH+A + EIVK+LL KGAD+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 354 NSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV 388
N+ + DG TP A E+ L G D++
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 457 DGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
DG T LH A G+ V L+ K D+N+ + G TP++ A KN H EI LLL GAD
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFL 542
V + K T H+A + E+V L
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 587 DSPLHLACATGNMDMITYAM-KYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDV 645
++PLH A G+ + + + K DVN + G TPLH+A +G E VK LL K DV
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADV 68
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANADVN 679
N ++KDG+T A + ++V++L ADVN
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL ++ + G E V LL AD N R+ K G+T LH AA + +I+KLLL AD+N
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
A K G H A + + +IV L G+++
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G TPLH A + E VK LL KGAD+N+ + DG TPL A E+ L+ G D+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 387 SVPEGE-RTALHMASQFGNLEMVNYL 411
+ + T H+A + G+ E+V L
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG-V 548
G TP++ A KN H E LL GADV + K T LH+A + E+V LL+ V
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
N + G TP H A E+ L AD+
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
TPLH A+ G ++ + L + AD+ R+ + T L+ AA + +++K LL GAD
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+ +P + + G +EIV L AD N R+
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 757 TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
T L+ AA + + +K LL GAD + +PL + + G EIV LL AD N
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
R+ K G+T H A + +I+KLL AD+NA
Sbjct: 71 RS-KDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 394 TALHMASQFGNLEMVNYLL-KHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
T LH A++ G+ E V LL K ++N + KDG TPL + K E+ ++ GAD+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK-NGHAEIVKLLLAKGADVN 69
Query: 453 AKLMDGTTALHLACYFGNLAMVNYL-VKHIDINSE 486
A+ DG T HLA G+ +V L K D+N+
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 649 TKDGSTALFFACYDKRLDLVEILLEANADVNL--GDGTYTPLYTALMKDPSLDIIKMLVK 706
+KDG+T L A + + V+ LL ADVN DG TPL+ A K+ +I+K+L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLA-AKNGHAEIVKLLLA 63
Query: 707 YGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNF 753
GADVN ++ TP H A G ++I + L + AD+ R++
Sbjct: 64 KGADVNARSKDGN--TPEHLAKKNG-HHEIVKLL-DAKGADVNARSW 106
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 356 GNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLL-K 413
G+ DG TPL A E L++ G D++ + T LH+A++ G+ E+V LL K
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 414 HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAK 454
++N + KDG TP + K E+ + GAD+ A+
Sbjct: 65 GADVNARSKDGNTPEHLAKK-NGHHEIVKLLDAKGADVNAR 104
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 242 LVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAI 301
L+ KG +N R + +TPLH A N E+VKLLL KGA+ A K N T H+A
Sbjct: 28 LLSKGADVNA--RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKK 84
Query: 302 VESVDIVKLLFDYGAE 317
+IVKLL GA+
Sbjct: 85 NGHHEIVKLLDAKGAD 100
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 820 KHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGS 879
K G+T LH AA + + +K LL AD+NA K G H A + + +IV LL G+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 880 NIEKATKYRMTFE 892
++ +K T E
Sbjct: 67 DVNARSKDGNTPE 79
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L GAD + D +PL + G EIV+ LL+ AD N T
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN-ATGNT 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
G T LH AA+ + L+I+++LLK+ AD+NA+DK+GK AF + N D+ L
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGND 358
AA D V++L GA+ VN + G TPLH+A LEIV++LL GAD+N+ +
Sbjct: 21 AARAGQDDEVRILTANGAD--VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGN 78
Query: 359 DGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
G TPL A + LE+ L+ HG D++ + +TA ++ GN ++ L K
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD+ A G T LHLA G+L +V L+K+ D+N+ + G+TP++ A +HLEI
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIV 96
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+LLK GADV + K T ++ + + ++ L
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+ + G TP++ A HLEI +LLK GADV + T LH+A +E+V
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 542 LLSHIG-VNLQDNKGCTPLHCAI 563
LL H VN QD G T +I
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISI 121
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L AD N G T LH AA L+I+++LLK AD+NA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYW-GHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
G+ H A A + +IV LL G+++ K+ T
Sbjct: 77 GNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN + G TPLH+A G LE V+ LL DVN G T L A + L++VE
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKN-GADVNATGNTGRTPLHLAAWADHLEIVE 97
Query: 670 ILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVK 706
+LL+ ADVN D + + + + D+ ++L K
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 416 NINHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVN 475
++N D G TPL + LE+ +++ GAD+ A G T LHLA + +L +V
Sbjct: 39 DVNANDYWGHTPLHLAAM-LGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVE 97
Query: 476 YLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
L+KH D+N+++ GKT +I N + ++ +L KL
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 637 LLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN-LGDGTYTPLYTALMKD 695
+L DVN G T L A L++VE+LL+ ADVN G+ TPL+ A D
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 696 PSLDIIKMLVKYGADVN 712
L+I+++L+K+GADVN
Sbjct: 92 -HLEIVEVLLKHGADVN 107
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A + +E+V++LL+ GA+ A + RT LH+AA + ++IV++L +GA+
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLKHGAD-- 105
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKIL 346
VN Q+ G T I+ ++ +IL
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYA 605
VN D G TPLH A + LE+ L+ + AD+ N +PLHLA +++++
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHG 629
+K+ DVN ++ G+T +++ +G
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNG 124
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 17/198 (8%)
Query: 350 GADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV-PEGERTALHMASQFGNLEMV 408
GAD+N+ + D TPL A+ + YL G D ++ + ER+ALH A+ +
Sbjct: 156 GADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXX 215
Query: 409 NYLLKHI----NINHQDKDGWTPLTCSIKGQASLEVFHS--IIEAGADI--------KAK 454
Y L +I D++G T L + +V + ++E GA + ++
Sbjct: 216 VYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275
Query: 455 LMDGTTALHLACYFGNLAMVNYLV--KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
G TALH A N +V YLV K + + +++ GKTPI A + +E+ L++
Sbjct: 276 KYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQ 335
Query: 513 GADVAVKMKSNFTCLHVA 530
GA V ++ T +A
Sbjct: 336 GASVEAVDATDHTARQLA 353
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 48/190 (25%)
Query: 257 ETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAI--------------- 301
+ +TPL A+L LV L + GA+P KS R+ALH AA
Sbjct: 165 DENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSE-RSALHQAAANRDFGXXVYXLNSTK 223
Query: 302 ----VESVD--------------------IVKLLFDYGAE------KSVNVQNVAGLTPL 331
+E +D KLL + GA+ + + G T L
Sbjct: 224 LKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283
Query: 332 HIACRRKCLEIVKILL-DKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL-SVP 389
H A + IVK L+ +KG++ + ++DG TP+ A + +EV YL+ G + +V
Sbjct: 284 HYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVD 343
Query: 390 EGERTALHMA 399
+ TA +A
Sbjct: 344 ATDHTARQLA 353
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 35/236 (14%)
Query: 680 LGDGTYTPLYTALMKDPSLDI---IKMLVKYGADVNLTNEACYYMTP------LHYASYR 730
LGD +T L +P I + Y +T E+ + P LH+ +
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASN 135
Query: 731 GDCNDIARFLVEEC------NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDIL 784
+V E AD+ + + T L A L+ +L KAGADP I
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIY 195
Query: 785 DLKDTSPLLSSCRQ-----GLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDII- 838
+ + S L + +Y + T L+ + + ++G TAL A + D +
Sbjct: 196 NKSERSALHQAAANRDFGXXVYXLNSTKLKGDIE---ELDRNGXTALXIVAHNEGRDQVA 252
Query: 839 --KLLLKYNADINAE-------DKY-GKIAFHSACQAKNWDIVTFLL-DAGSNIEK 883
KLL++ A ++ + +KY G+ A H A Q N IV +L+ + GSN +K
Sbjct: 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDK 308
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 76/228 (33%), Gaps = 63/228 (27%)
Query: 518 VKMKSNFTCLHVACEFASIEMVSFLLSH---------IGVNLQDNKGCTPLHCAIVGNQL 568
+ + N T LH +S E L+ H VN D TPL A++ +
Sbjct: 120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRR 179
Query: 569 EVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKYFDVNIENDI--------- 617
+ +L + AD T+Y S LH A A + Y + ++ DI
Sbjct: 180 RLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLN--STKLKGDIEELDRNGXT 237
Query: 618 -----------------------------------------GETPLHVAVSHGCLEAVKF 636
G T LH A VK+
Sbjct: 238 ALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKY 297
Query: 637 LLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
L+ K + + + +DG T + A + R+++V L++ A V D T
Sbjct: 298 LVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDAT 345
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+ + TP+ A+ + L K GAD + KS + LH A +
Sbjct: 158 DVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVY 217
Query: 542 LLSHI----GVNLQDNKGCTPLHCAIVG-----NQLEVFNHLINSNA----------DIT 582
L+ + D G T L IV +Q+ L+ A D
Sbjct: 218 XLNSTKLKGDIEELDRNGXTAL--XIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275
Query: 583 MYKNDSPLHLACATGNMDMITY--AMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLL 638
YK + LH A N ++ Y K + + +++ G+TP+ +A G +E V +L+
Sbjct: 276 KYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLI 333
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + G EIV+ LL+ AD N
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAI 79
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
G T LH AAF L+I ++LLK+ AD+NA+DK+GK AF + N D+ L
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN ++ GLTPL++A LEIV++LL GAD+N+ + G TPL
Sbjct: 28 DEVRILMANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH 85
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
A LE+ L+ HG D++ + +TA ++ GN ++ L K
Sbjct: 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N++++ G TP+Y A + HLEI +LLK GADV FT LH+A +E+
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 542 LLSHIG-VNLQDNKGCTPLHCAI 563
LL H VN QD G T +I
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISI 121
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N +D+ G TPL + LE+ +++ GAD+ A
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADVNAVDAI 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
G T LHLA + G+L + L+KH D+N+++ GKT +I N + ++ +L KL
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N + ++G T L+ A H L+I+++LLK AD+NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKD-EYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
D G H A + +I LL G+++ K+ T
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN +++ G TPL++A +HG LE V+ LL DVN G T L A + L++ E
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAE 97
Query: 670 ILLEANADVNLGD 682
+LL+ ADVN D
Sbjct: 98 VLLKHGADVNAQD 110
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN K + G T L+ A L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 675 NADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVN 712
ADVN D +TPL+ A L+I ++L+K+GADVN
Sbjct: 70 GADVNAVDAIGFTPLHLAAFI-GHLEIAEVLLKHGADVN 107
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 588 SPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+PL+LA A G+++++ +K DVN + IG TPLH+A G LE + LL DVN
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVN 107
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEAN 675
+ K G TA + + DL EIL + N
Sbjct: 108 AQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMITYA 605
VN +D G TPL+ A LE+ L+ + AD+ +PLHLA G++++
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHG 629
+K+ DVN ++ G+T +++ +G
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNG 124
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 38/147 (25%)
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
D +++L+ GADVN +E Y +TPL+ A+ G
Sbjct: 28 DEVRILMANGADVNAKDE--YGLTPLYLATAHG--------------------------- 58
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+L++++ LLK GAD + +D +PL + G EI + LL++ AD N +
Sbjct: 59 --------HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYN 845
K G TA + + D+ ++L K N
Sbjct: 111 -KFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N D+ Y TPL+ A + +E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDE-----YGL------TPLYLATAHGHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ A++ + T LH+AA + ++I ++L +GA+ VN Q+ G T I+
Sbjct: 65 VLLKNGADVNAVD-AIGFTPLHLAAFIGHLEIAEVLLKHGAD--VNAQDKFGKTAFDISI 121
Query: 336 RRKCLEIVKIL 346
++ +IL
Sbjct: 122 GNGNEDLAEIL 132
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 19/214 (8%)
Query: 350 GADINSGNDDGCTPLFCAIA-------------QNCLEVFNYLVNHGCDL--SVPEGERT 394
G D+N DG TPL A ++ V + + G L T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 395 ALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGA-DIK 452
ALH+A+++ + LL+ + N QD G TPL ++ A VF +I A D+
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ-GVFQILIRNRATDLD 119
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
A++ DGTT L LA M+ L+ H D+N+ +DLGK+ +++A N+++ +LLK
Sbjct: 120 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 179
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
GA+ ++ T L +A S E LL H
Sbjct: 180 NGANKDMQNNREETPLFLAAREGSYETAKVLLDH 213
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 35/258 (13%)
Query: 610 DVNIENDIGETPLHVA-VSHGCLEA-------------VKFLLNTKNIDVNHKTKDGSTA 655
DVN+ G TPL +A S G LE F+ ++ N + G TA
Sbjct: 3 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETA 61
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A R D + LLEA+AD N+ D TPL+ A+ D + ++L++ A +L
Sbjct: 62 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ-GVFQILIRNRA-TDLD 119
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVE-------ECNADITLRNFNNRTALNFAAFGNN 767
TPL A AR VE +AD+ + ++AL++AA NN
Sbjct: 120 ARMHDGTTPLILA---------ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 170
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
+D LLK GA+ D+ + ++ +PL + R+G YE LL++ A+ ++ T
Sbjct: 171 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRLPRD 229
Query: 828 TAAFHNQLDIIKLLLKYN 845
A DI++LL +YN
Sbjct: 230 IAQERMHHDIVRLLDEYN 247
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 19/230 (8%)
Query: 415 ININHQDKDGWTPL---TCSIKG---------QASLEVFHSIIEAGADIKAKL-MDGTTA 461
+++N + DG+TPL +CS G + + V I GA + + G TA
Sbjct: 2 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 61
Query: 462 LHLAC-YFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA-DVAVK 519
LHLA Y + A L D N ++++G+TP++ A+ + +F +L++ A D+ +
Sbjct: 62 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 121
Query: 520 MKSNFTCLHVACEFASIEMVSFLL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSN 578
M T L +A A M+ L+ SH VN D+ G + LH A N ++ L+ +
Sbjct: 122 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 181
Query: 579 ADITMYKN--DSPLHLACATGNMDMITYAMKYF-DVNIENDIGETPLHVA 625
A+ M N ++PL LA G+ + + +F + +I + + P +A
Sbjct: 182 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 231
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 19/219 (8%)
Query: 548 VNLQDNKGCTPLHCAI-------VGNQLE------VFNHLINSNADI---TMYKNDSPLH 591
VN++ G TPL A GN E V + I A + T ++ LH
Sbjct: 4 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 63
Query: 592 LACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTK 650
LA D ++ D NI++++G TPLH AVS + L+ + D++ +
Sbjct: 64 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 123
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGAD 710
DG+T L A ++E L+ ++ADVN D ++D +L+K GA+
Sbjct: 124 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 183
Query: 711 VNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADIT 749
++ N TPL A+ G L N DIT
Sbjct: 184 KDMQNNR--EETPLFLAAREGSYETAKVLLDHFANRDIT 220
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 21/171 (12%)
Query: 749 TLRNFNNRT---ALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPL---LSSCRQGLYE 802
+L N +RT AL+ AA + D K LL+A AD +I D +PL +S+ QG+++
Sbjct: 49 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 108
Query: 803 IVDTLLEYNADTNLRTIKH-GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
I L N T+L H G+T L AA +++ L+ +AD+NA D GK A H
Sbjct: 109 I----LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 164
Query: 862 ACQAKNWDIVTFLLDAGSNIEKATKYRMT----------FESSKVVEKHVA 902
A N D LL G+N + T +E++KV+ H A
Sbjct: 165 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 215
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 312 FDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
F Y N + G T LH+A R + K LL+ AD N ++ G TPL A++ +
Sbjct: 43 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 102
Query: 372 CLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCS 431
VF L+ + + +++ + DG TPL +
Sbjct: 103 AQGVFQILIRN------------------------------RATDLDARMHDGTTPLILA 132
Query: 432 IKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLG 490
+ A + +I + AD+ A G +ALH A N+ L+K+ + + +N+
Sbjct: 133 AR-LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 191
Query: 491 KTPIYFAIKNNHLEIFNLLL 510
+TP++ A + E +LL
Sbjct: 192 ETPLFLAAREGSYETAKVLL 211
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA-D 780
T LH A+ R +D A+ L+E +AD +++ RT L+ A + + + L++ A D
Sbjct: 60 TALHLAA-RYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 781 PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
D T+PL+ + R + +++ L+ +AD N G +ALH AA N +D +
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVV 176
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
LLK A+ + ++ + A + +++ LLD +N
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 216
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 46/172 (26%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A + ++D AK L++ N+ D N R TPLH+A+ +
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQD-----NMGR------TPLHAAVSADAQGV 106
Query: 274 VKLLLEK-----------GANPL------AIE----------------KSRNRTALHVAA 300
++L+ G PL A+E ++ALH AA
Sbjct: 107 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 166
Query: 301 IVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
V +VD +L GA K ++QN TPL +A R E K+LLD A+
Sbjct: 167 AVNNVDAAVVLLKNGANK--DMQNNREETPLFLAAREGSYETAKVLLDHFAN 216
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPL A +IE V+ LLE GA+P + K R +AL +A+ DIV LL + +
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKER-ESALSLASTGGYTDIVGLLLERDVD-- 94
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+N+ + G TPL A R ++ V+ LL +GAD+ + D G TP+ A+A +V +
Sbjct: 95 INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Query: 380 VNH 382
NH
Sbjct: 155 ENH 157
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Query: 391 GERTALHMASQFGNLEMVNYLLKHIN--INHQDKDGWTPLTCSIKGQASLEVFHSIIEAG 448
G+ ++H + G L+ + L+ + +N D+ G+TPL + +E ++E G
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA-SAFGEIETVRFLLEWG 59
Query: 449 ADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFN 507
AD + +AL LA G +V L+ + +DIN + G TP+ +A++ NH++
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119
Query: 508 LLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDN 553
LL GAD+ + S +T + +A ++ + +HI Q N
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 483 INSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+N ++ G TP+ +A +E LL+ GAD + K + L +A ++V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 543 LSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATG 597
L + +N+ D G TPL A+ GN ++ L+ AD+T + +P+ LA A G
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 7/145 (4%)
Query: 590 LHLACATGNMDMITYAMKYFD--VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNH 647
+H A G +D + ++ D VN ++ G TPL A + G +E V+FLL D +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHI 64
Query: 648 KTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVK 706
K+ +AL A D+V +LLE + D+N+ D TPL A ++ + ++ L+
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA-VRGNHVKCVEALLA 123
Query: 707 YGADVNLTNEACYYMTPLHYASYRG 731
GAD LT EA TP+ A G
Sbjct: 124 RGAD--LTTEADSGYTPMDLAVALG 146
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
+H +++ +K L KG N + R T L A+ ++ V+ L ++GA+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 322 VQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN 381
+ + L +A +IV +LL++ DIN + +G TPL A+ N ++ L+
Sbjct: 66 AKERE--SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 382 HGCDLSV-PEGERTALHMASQFGNLEMVNYLLKHI 415
G DL+ + T + +A G ++ + HI
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 757 TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
T L +A+ ++ ++FLL+ GADP IL + S L + G +IV LLE + D N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
+G T L A N + ++ LL AD+ E G A
Sbjct: 98 YDW-NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV------------- 143
Query: 877 AGSNIEKATKYRMTFESSKVVEKHVAKLRAANI 909
A YR + +V+E H+ KL +N+
Sbjct: 144 -------ALGYR---KVQQVIENHILKLFQSNL 166
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 588 SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+PL A A G ++ + + +++ D +I E+ L +A + G + V LL +++D+N
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE-RDVDIN 96
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNL-GDGTYTPLYTAL 692
+G T L +A + VE LL AD+ D YTP+ A+
Sbjct: 97 IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEEC 744
+TPL A ++ ++ L+++GAD ++ A + L AS G DI L+E
Sbjct: 37 FTPLIWASAFG-EIETVRFLLEWGADPHIL--AKERESALSLAS-TGGYTDIVGLLLER- 91
Query: 745 NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
+ DI + ++N T L +A GN++ ++ LL GAD
Sbjct: 92 DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTN-LRTIK 820
AA D ++ L+ GAD + D +PL + EIV+ LL+ AD N + I
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI- 79
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
G T LH A + L+I+++LLK+ AD+NA+DK+GK AF + N D+ L
Sbjct: 80 -GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLF 365
D V++L GA+ VN ++ GLTPLH+A LEIV++LL GAD+N+ + G TPL
Sbjct: 28 DEVRILMANGAD--VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLH 85
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLK 413
LE+ L+ HG D++ + +TA ++ GN ++ L K
Sbjct: 86 LVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+E+ +G TP++ A N+HLEI +LLK GADV T LH+ + +E+V
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 542 LLSH-IGVNLQDNKGCTPLHCAI 563
LL H VN QD G T +I
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISI 121
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N +DK G TPL + LE+ +++ GAD+ A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMND-HLEIVEVLLKNGADVNAIDAI 79
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
G T LHL +G+L +V L+KH D+N+++ GKT +I N + ++ +L KL
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N K G T LH AA ++ L+I+++LLK AD+NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAED-KVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
D G+ H + +IV LL G+++ K+ T
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD+ A+ G T LHLA +L +V L+K+ D+N+ + +G+TP++ HLEI
Sbjct: 37 GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIV 96
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+LLK GADV + K T ++ + + ++ L
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 588 SPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+PLHLA +++++ +K DVN + IGETPLH+ +G LE V+ LL DVN
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLL-KHGADVN 107
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEAN 675
+ K G TA + + DL EIL + N
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMITYA 605
VN +D G TPLH A + + LE+ L+ + AD+ ++PLHL G+++++
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 606 MKY-FDVNIENDIGETPLHVAVSHG 629
+K+ DVN ++ G+T +++ +G
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNG 124
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DVN + K G T L A + L++VE+LL+
Sbjct: 12 SDLGKKLLEAARA-GQDDEVRILM-ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 675 NADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVN 712
ADVN D TPL+ M L+I+++L+K+GADVN
Sbjct: 70 GADVNAIDAIGETPLHLVAMY-GHLEIVEVLLKHGADVN 107
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 14/131 (10%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G +N DK V L TPLH A +N +E+V+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDK-VGL----------TPLHLAAMNDHLEIVE 64
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
+LL+ GA+ AI+ + T LH+ A+ ++IV++L +GA+ VN Q+ G T I+
Sbjct: 65 VLLKNGADVNAID-AIGETPLHLVAMYGHLEIVEVLLKHGAD--VNAQDKFGKTAFDISI 121
Query: 336 RRKCLEIVKIL 346
++ +IL
Sbjct: 122 DNGNEDLAEIL 132
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ R +D R L+ AD+ + T L+ AA ++L++++ LLK GAD + +D
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
+PL G EIV+ LL++ AD N + K G TA + + D+ ++L K N
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQD-KFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN E+ +G TPLH+A + LE V+ LL DVN G T L L++VE
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN-GADVNAIDAIGETPLHLVAMYGHLEIVE 97
Query: 670 ILLEANADVNLGD 682
+LL+ ADVN D
Sbjct: 98 VLLKHGADVNAQD 110
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 26/231 (11%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
VNV+ G TPL IA C G + +GN + ++ V +
Sbjct: 3 VNVRGPDGFTPLMIA---SC---------SGGGLETGNSEE--------EEDAPAVISDF 42
Query: 380 VNHGCDL--SVPEGERTALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQA 436
+ G L TALH+A+++ + LL+ + N QD G TPL ++ A
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102
Query: 437 SLEVFHSIIEAGA-DIKAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPI 494
VF +I A D+ A++ DGTT L LA M+ L+ H D+N+ +DLGK+ +
Sbjct: 103 Q-GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Query: 495 YFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
++A N+++ +LLK GA+ ++ T L +A S E LL H
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 34/229 (14%)
Query: 610 DVNIENDIGETPLHVA-VSHGCLEA-------------VKFLLNTKNIDVNHKTKDGSTA 655
DVN+ G TPL +A S G LE F+ ++ N + G TA
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETA 60
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A R D + LLEA+AD N+ D TPL+ A+ D + ++L++ A +L
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ-GVFQILIRNRA-TDLD 118
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVE-------ECNADITLRNFNNRTALNFAAFGNN 767
TPL A AR VE +AD+ + ++AL++AA NN
Sbjct: 119 ARMHDGTTPLILA---------ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
+D LLK GA+ D+ + ++ +PL + R+G YE LL++ A+ ++
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 19/230 (8%)
Query: 415 ININHQDKDGWTPL---TCSIKG---------QASLEVFHSIIEAGADIKAKL-MDGTTA 461
+++N + DG+TPL +CS G + + V I GA + + G TA
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 462 LHLAC-YFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA-DVAVK 519
LHLA Y + A L D N ++++G+TP++ A+ + +F +L++ A D+ +
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 520 MKSNFTCLHVACEFASIEMVSFLL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSN 578
M T L +A A M+ L+ SH VN D+ G + LH A N ++ L+ +
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 579 ADITMYKN--DSPLHLACATGNMDMITYAMKYF-DVNIENDIGETPLHVA 625
A+ M N ++PL LA G+ + + +F + +I + + P +A
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 230
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 19/219 (8%)
Query: 548 VNLQDNKGCTPLHCAI-------VGNQLE------VFNHLINSNADI---TMYKNDSPLH 591
VN++ G TPL A GN E V + I A + T ++ LH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 592 LACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTK 650
LA D ++ D NI++++G TPLH AVS + L+ + D++ +
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGAD 710
DG+T L A ++E L+ ++ADVN D ++D +L+K GA+
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Query: 711 VNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADIT 749
++ N TPL A+ G L N DIT
Sbjct: 183 KDMQNNR--EETPLFLAAREGSYETAKVLLDHFANRDIT 219
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 21/171 (12%)
Query: 749 TLRNFNNRT---ALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPL---LSSCRQGLYE 802
+L N +RT AL+ AA + D K LL+A AD +I D +PL +S+ QG+++
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107
Query: 803 IVDTLLEYNADTNLRTIKH-GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
I L N T+L H G+T L AA +++ L+ +AD+NA D GK A H
Sbjct: 108 I----LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163
Query: 862 ACQAKNWDIVTFLLDAGSNIEKATKYRMT----------FESSKVVEKHVA 902
A N D LL G+N + T +E++KV+ H A
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 312 FDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
F Y N + G T LH+A R + K LL+ AD N ++ G TPL A++ +
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 372 CLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCS 431
VF L+ + + +++ + DG TPL +
Sbjct: 102 AQGVFQILIRN------------------------------RATDLDARMHDGTTPLILA 131
Query: 432 IKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLG 490
+ A + +I + AD+ A G +ALH A N+ L+K+ + + +N+
Sbjct: 132 AR-LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190
Query: 491 KTPIYFAIKNNHLEIFNLLL 510
+TP++ A + E +LL
Sbjct: 191 ETPLFLAAREGSYETAKVLL 210
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 803 IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
++ + A + +T + G TALH AA +++ D K LL+ +AD N +D G+ H+A
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 863 CQAKNWDIVTFLL 875
A + L+
Sbjct: 98 VSADAQGVFQILI 110
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA-D 780
T LH A+ R +D A+ L+E +AD +++ RT L+ A + + + L++ A D
Sbjct: 59 TALHLAA-RYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 781 PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
D T+PL+ + R + +++ L+ +AD N G +ALH AA N +D +
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVV 175
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
LLK A+ + ++ + A + +++ LLD +N
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 46/172 (26%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A + ++D AK L++ N+ D N R TPLH+A+ +
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQD-----NMGR------TPLHAAVSADAQGV 105
Query: 274 VKLLLEK-----------GANPL------AIE----------------KSRNRTALHVAA 300
++L+ G PL A+E ++ALH AA
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165
Query: 301 IVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
V +VD +L GA K ++QN TPL +A R E K+LLD A+
Sbjct: 166 AVNNVDAAVVLLKNGANK--DMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
R +D R L+ N ++ + L+ AA + + LL+AG D D
Sbjct: 11 RAGQDDEVRILM--ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR 68
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + +G IV+ LL++ AD N + + TALH A HN ++++LL+KY AD++
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVELLIKYGADVH 127
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFL 874
+ K+ K AF + N D+ L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GA P D TSPL + + G + + LL + RT K
Sbjct: 9 AARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KV 66
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
T LH AA +I+++LLK+ AD+NA+D A H A + + ++V L+ G+++
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 882 EKATKY 887
+K+
Sbjct: 127 HTQSKF 132
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 617 IGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANA 676
+G +PLH+A +G + LL + + +TK T L A + ++VE+LL+ A
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 677 DVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEAC 718
DVN D T L+ A + +++++L+KYGADV+ ++ C
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQ-EVVELLIKYGADVHTQSKFC 133
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 458 GTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
GT+ LHLA +G+ + L++ + ++ + +TP++ A H I +LLK GADV
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSH 545
K T LH A E E+V L+ +
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKY 122
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
++ AG A+ T LH+A G+ +V L+KH D+N+++ L T +++A ++NH
Sbjct: 53 LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH 112
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
E+ LL+K GADV + K T ++ + + ++ L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 489 LGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IG 547
LG +P++ A + H +LL+ G + K + T LH+A +V LL H
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
VN +D T LH A N EV LI AD+
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDVNI 613
G L A G EV + N T + SPLHLA G+ ++ +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 614 ENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE 673
+ TPLH+A S G V+ LL DVN K TAL +A ++VE+L++
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Query: 674 ANADVN 679
ADV+
Sbjct: 122 YGADVH 127
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V++L+ GA P + + LH+AA ++L G + + TPLH+
Sbjct: 18 VRILMANGA-PFTTD-WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK--VDRTPLHM 73
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
A IV++LL GAD+N+ + T L A N EV L+ +G D+
Sbjct: 74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNA--DITMYKNDSPLHLACATGNMDMITYAMKY-FDV 611
G +PLH A L+ + D + +PLH+A + G+ +++ +K+ DV
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N ++ + T LH A H E V+ L+ DV+ ++K TA + + DL EIL
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 36/178 (20%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV-PEGE 392
A R + V+IL+ GA + + G +PL A L+ G + +
Sbjct: 9 AARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 393 RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
RT LHMA+ G+ +V LLKH GAD+
Sbjct: 68 RTPLHMAASEGHANIVEVLLKH---------------------------------GADVN 94
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLL 509
AK M TALH A + +V L+K+ D+++++ KT +I N + ++ +L
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
+PLH A+ G + L + D R +RT L+ AA + ++++ LLK GAD
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDA--RTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+ D+ + L + E+V+ L++Y AD + ++
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAE 317
TPLH A +V++LL+ GA+ A + + TALH A ++V+LL YGA+
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVELLIKYGAD 125
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 26/231 (11%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
VNV+ G TPL IA C G + +GN + ++ V +
Sbjct: 3 VNVRGPDGFTPLMIA---SC---------SGGGLETGNSEE--------EEDAPAVISDF 42
Query: 380 VNHGCDL--SVPEGERTALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQA 436
+ G L TALH+A+ + + LL+ + N QD G TPL ++ A
Sbjct: 43 IYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102
Query: 437 SLEVFHSIIEAGA-DIKAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPI 494
VF +I A D+ A++ DGTT L LA M+ L+ H D+N+ +DLGK+ +
Sbjct: 103 Q-GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Query: 495 YFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
++A N+++ +LLK GA+ ++ T L +A S E LL H
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 34/229 (14%)
Query: 610 DVNIENDIGETPLHVA-VSHGCLEA-------------VKFLLNTKNIDVNHKTKDGSTA 655
DVN+ G TPL +A S G LE F+ ++ N + G+TA
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGATA 60
Query: 656 LFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT 714
L A R D + LLEA+AD N+ D TPL+ A+ D + ++L++ A +L
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ-GVFQILIRNRA-TDLD 118
Query: 715 NEACYYMTPLHYASYRGDCNDIARFLVE-------ECNADITLRNFNNRTALNFAAFGNN 767
TPL A AR VE +AD+ + ++AL++AA NN
Sbjct: 119 ARMHDGTTPLILA---------ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
+D LLK GA+ D+ + ++ +PL + R+G YE LL++ A+ ++
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 19/230 (8%)
Query: 415 ININHQDKDGWTPL---TCSIKG---------QASLEVFHSIIEAGADIKAKL-MDGTTA 461
+++N + DG+TPL +CS G + + V I GA + + G TA
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATA 60
Query: 462 LHLAC-YFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA-DVAVK 519
LHLA Y + A L D N ++++G+TP++ A+ + +F +L++ A D+ +
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 520 MKSNFTCLHVACEFASIEMVSFLL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSN 578
M T L +A A M+ L+ SH VN D+ G + LH A N ++ L+ +
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 579 ADITMYKN--DSPLHLACATGNMDMITYAMKYF-DVNIENDIGETPLHVA 625
A+ M N ++PL LA G+ + + +F + +I + + P +A
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 230
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Query: 588 SPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+ LHLA A D ++ D NI++++G TPLH AVS + L+ + D++
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVK 706
+ DG+T L A ++E L+ ++ADVN D ++D +L+K
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 707 YGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADIT 749
GA+ ++ N TPL A+ G L N DIT
Sbjct: 179 NGANKDMQNNR--EETPLFLAAREGSYETAKVLLDHFANRDIT 219
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 294 TALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILL-DKGAD 352
TALH+AA D K L + A+ N+Q+ G TPLH A + +IL+ ++ D
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYL 411
+++ DG TPL A + L+N D+ +V + ++ALH A+ N++ L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 412 LKH-ININHQDKDGWTPL 428
LK+ N + Q+ TPL
Sbjct: 177 LKNGANKDMQNNREETPL 194
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 21/171 (12%)
Query: 749 TLRNFNNRT---ALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPL---LSSCRQGLYE 802
+L N +RT AL+ AA + D K LL+A AD +I D +PL +S+ QG+++
Sbjct: 48 SLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107
Query: 803 IVDTLLEYNADTNLRTIKH-GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
I L N T+L H G+T L AA +++ L+ +AD+NA D GK A H
Sbjct: 108 I----LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163
Query: 862 ACQAKNWDIVTFLLDAGSNIEKATKYRMT----------FESSKVVEKHVA 902
A N D LL G+N + T +E++KV+ H A
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 803 IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
++ + A + +T + G+TALH AA +++ D K LL+ +AD N +D G+ H+A
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 863 CQAKNWDIVTFLL 875
A + L+
Sbjct: 98 VSADAQGVFQILI 110
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 32/200 (16%)
Query: 312 FDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
F Y N + G T LH+A + K LL+ AD N ++ G TPL A++ +
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 372 CLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCS 431
VF L+ + + +++ + DG TPL +
Sbjct: 102 AQGVFQILIRN------------------------------RATDLDARMHDGTTPLILA 131
Query: 432 IKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLG 490
+ A + +I + AD+ A G +ALH A N+ L+K+ + + +N+
Sbjct: 132 AR-LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190
Query: 491 KTPIYFAIKNNHLEIFNLLL 510
+TP++ A + E +LL
Sbjct: 191 ETPLFLAAREGSYETAKVLL 210
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A ++D AK L++ N+ D N R TPLH+A+ +
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQD-----NMGR------TPLHAAVSADAQGV 105
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
++L+ A L T L +AA + +++ L + A+ VN + G + LH
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD--VNAVDDLGKSALHW 163
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNH 382
A ++ +LL GA+ + N+ TPLF A + E L++H
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKN--DSPLHLACATGNMDM--ITY 604
N D G T LH A ++ + L+ ++AD + N +PLH A + + I
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 605 AMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+ D++ G TPL +A ++ L+N+ + DVN G +AL +A
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNN 169
Query: 665 LDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVNLTN 715
+D +LL+ A+ ++ + TPL+ A ++ S + K+L+ + A+ ++T+
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLA-AREGSYETAKVLLDHFANRDITD 220
Score = 37.0 bits (84), Expect = 0.057, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA-D 780
T LH A+ + R L E +AD +++ RT L+ A + + + L++ A D
Sbjct: 59 TALHLAAAYSRSDAAKRLL--EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 781 PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
D T+PL+ + R + +++ L+ +AD N G +ALH AA N +D +
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVV 175
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
LLK A+ + ++ + A + +++ LLD +N
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Query: 268 NSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAG 327
+S +++ LL +GA A T+LH+AA D K L D GA+ N Q+ G
Sbjct: 27 DSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD--ANSQDNTG 84
Query: 328 LTPLHIACRRKCLEIVKILL-DKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
TPLH A + + +ILL ++ ++N+ DG TPL A + L+ D+
Sbjct: 85 RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI 144
Query: 387 SVPEGE-RTALHMASQFGNLEMVNYLL-KHININHQDKDGWTPL 428
+ + +TALH A+ N E VN LL H N + QD TPL
Sbjct: 145 NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 24/224 (10%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
GLTPL IA R LD G DI + D + +V + L+ G +L
Sbjct: 2 GLTPLMIAAVRGGG------LDTGEDIENNED------------STAQVISDLLAQGAEL 43
Query: 387 --SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHS 443
++ + T+LH+A++F + LL + N QD G TPL ++ A + VF
Sbjct: 44 NATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADA-MGVFQI 102
Query: 444 IIEAGA-DIKAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNN 501
++ A ++ A++ DGTT L LA MV L+ DIN+ ++ GKT +++A N
Sbjct: 103 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN 162
Query: 502 HLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
+ E N+LL A+ + + T L +A S E LL +
Sbjct: 163 NTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN 206
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 498 IKNNH---LEIFNLLLKLGADVAVKM-KSNFTCLHVACEFASIEMVSFLL-SHIGVNLQD 552
I+NN ++ + LL GA++ M K+ T LH+A FA + LL + N QD
Sbjct: 22 IENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQD 81
Query: 553 NKGCTPLHCAIVGNQLEVFNHLIN---SNADITMYKNDSPLHLAC--ATGNM--DMITYA 605
N G TPLH A+ + + VF L+ +N + M+ +PL LA A M D+IT
Sbjct: 82 NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 141
Query: 606 MKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGS-----TALFFAC 660
D+N ++ G+T LH A + EAV LL ++H +D T LF A
Sbjct: 142 A---DINAADNSGKTALHWAAAVNNTEAVNILL------MHHANRDAQDDKDETPLFLAA 192
Query: 661 YDKRLDLVEILLEANADVNLGD 682
+ + + LL+ A+ + D
Sbjct: 193 REGSYEASKALLDNFANREITD 214
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
+T LH A + + K LL+ GA+ + + + RT LH A +++ + ++L A
Sbjct: 52 ETSLHLAARFARADAAKRLLDAGADANS-QDNTGRTPLHAAVAADAMGVFQILLRNRA-T 109
Query: 319 SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNY 378
++N + G TPL +A R +V+ L+ ADIN+ ++ G T L A A N E N
Sbjct: 110 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNI 169
Query: 379 LVNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLL 412
L+ H + + + T L +A++ G+ E LL
Sbjct: 170 LLMHHANRDAQDDKDETPLFLAAREGSYEASKALL 204
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
D N +++ G TPLH AV+ + + LL + ++N + DG+T L A +VE
Sbjct: 76 DANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 135
Query: 670 ILLEANADVNLGDGT 684
L+ A+AD+N D +
Sbjct: 136 DLITADADINAADNS 150
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 6/171 (3%)
Query: 475 NYLVKHIDINSEND-LGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEF 533
+ L + ++N+ D G+T ++ A + + LL GAD + + T LH A
Sbjct: 35 DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA 94
Query: 534 ASIEMVSFLLSHIGVNLQD--NKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SP 589
++ + LL + NL + G TPL A + LI ++ADI N +
Sbjct: 95 DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTA 154
Query: 590 LHLACATGNMDMIT-YAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLN 639
LH A A N + + M + + + ++D ETPL +A G EA K LL+
Sbjct: 155 LHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD 205
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 774 LLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH-GSTALHTAAFH 832
LL AGAD + D +PL ++ + LL N TNL H G+T L AA
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLR-NRATNLNARMHDGTTPLILAARL 128
Query: 833 NQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
+++ L+ +ADINA D GK A H A N + V LL +N
Sbjct: 129 AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN 176
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH+A+ + + ++LL A L T L +AA + +V+ L A+
Sbjct: 86 TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT--ADAD 143
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+N + +G T LH A E V ILL A+ ++ +D TPLF A + E L
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 203
Query: 380 VNHGCDLSVPEG-ERTALHMASQFGNLEMVNYLLKH 414
+++ + + + +R +AS+ + ++V L +H
Sbjct: 204 LDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 239
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPL A +IE V+ LLE GA+P + K R +AL +A+ DIV LL + +
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKER-ESALSLASTGGYTDIVGLLLERDVD-- 94
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+N+ + G TPL A ++ V+ LL +GAD+ + D G TP+ A+A +V +
Sbjct: 95 INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Query: 380 VNH 382
NH
Sbjct: 155 ENH 157
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 391 GERTALHMASQFGNLEMVNYLLKHIN--INHQDKDGWTPLTCSIKGQASLEVFHSIIEAG 448
G+ ++H + G L+ + L+ + +N D+ G+TPL + +E ++E G
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA-SAFGEIETVRFLLEWG 59
Query: 449 ADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFN 507
AD + +AL LA G +V L+ + +DIN + G TP+ +A+ NH++
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVE 119
Query: 508 LLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDN 553
LL GAD+ + S +T + +A ++ + +HI Q N
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 483 INSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+N ++ G TP+ +A +E LL+ GAD + K + L +A ++V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 543 LSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATG 597
L + +N+ D G TPL A+ GN ++ L+ AD+T + +P+ LA A G
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 7/145 (4%)
Query: 590 LHLACATGNMDMITYAMKYFD--VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNH 647
+H A G +D + ++ D VN ++ G TPL A + G +E V+FLL D +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHI 64
Query: 648 KTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVK 706
K+ +AL A D+V +LLE + D+N+ D TPL A+ + + ++ L+
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGN-HVKCVEALLA 123
Query: 707 YGADVNLTNEACYYMTPLHYASYRG 731
GAD LT EA TP+ A G
Sbjct: 124 RGAD--LTTEADSGYTPMDLAVALG 146
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
+H +++ +K L KG N + R T L A+ ++ V+ L ++GA+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 322 VQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN 381
+ + L +A +IV +LL++ DIN + +G TPL A+ N ++ L+
Sbjct: 66 AKERE--SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLA 123
Query: 382 HGCDLSV-PEGERTALHMASQFGNLEMVNYLLKHI 415
G DL+ + T + +A G ++ + HI
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 757 TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
T L +A+ ++ ++FLL+ GADP IL + S L + G +IV LLE + D N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
+G T L A N + ++ LL AD+ E G A
Sbjct: 98 YDW-NGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV------------- 143
Query: 877 AGSNIEKATKYRMTFESSKVVEKHVAKLRAANI 909
A YR + +V+E H+ KL +N+
Sbjct: 144 -------ALGYR---KVQQVIENHILKLFQSNL 166
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 588 SPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
+PL A A G ++ + + +++ D +I E+ L +A + G + V LL +++D+N
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE-RDVDIN 96
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNL-GDGTYTPLYTAL 692
+G T L +A + + VE LL AD+ D YTP+ A+
Sbjct: 97 IYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEEC 744
+TPL A ++ ++ L+++GAD ++ A + L AS G DI L+E
Sbjct: 37 FTPLIWASAFG-EIETVRFLLEWGADPHIL--AKERESALSLAS-TGGYTDIVGLLLER- 91
Query: 745 NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
+ DI + ++N T L +A GN++ ++ LL GAD
Sbjct: 92 DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGAD 127
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Query: 394 TALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGA-DI 451
TALH+A+++ + LL+ + N QD G TPL ++ A VF +I A D+
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ-GVFQILIRNRATDL 85
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
A++ DGTT L LA M+ L+ H D+N+ +DLGK+ +++A N+++ +LL
Sbjct: 86 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 145
Query: 511 KLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
K GA+ ++ T L +A S E LL H
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 20/208 (9%)
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKML 704
N + G TAL A R D + LLEA+AD N+ D TPL+ A+ D + ++L
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ-GVFQIL 77
Query: 705 VKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE-------ECNADITLRNFNNRT 757
++ A +L TPL A AR VE +AD+ + ++
Sbjct: 78 IRNRA-TDLDARMHDGTTPLILA---------ARLAVEGMLEDLINSHADVNAVDDLGKS 127
Query: 758 ALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLR 817
AL++AA NN+D LLK GA+ D+ + ++ +PL + R+G YE LL++ A+ ++
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI- 186
Query: 818 TIKHGSTALHTAAFHNQLDIIKLLLKYN 845
T A DI++LL +YN
Sbjct: 187 TDHMDRLPRDIAQERMHHDIVRLLDEYN 214
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 8/164 (4%)
Query: 525 TCLHVACEFASIEMVSFLL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNA---D 580
T LH+A ++ + LL + N+QDN G TPLH A+ + VF LI + A D
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 581 ITMYKNDSPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLL- 638
M+ +PL LA M+ + + DVN +D+G++ LH A + ++A LL
Sbjct: 87 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 639 NTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
N N D+ + ++ T LF A + + ++LL+ A+ ++ D
Sbjct: 147 NGANKDMQNNREE--TPLFLAAREGSYETAKVLLDHFANRDITD 188
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 3/164 (1%)
Query: 587 DSPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDV 645
++ LHLA D ++ D NI++++G TPLH AVS + L+ + D+
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLV 705
+ + DG+T L A ++E L+ ++ADVN D ++D +L+
Sbjct: 86 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 145
Query: 706 KYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADIT 749
K GA+ ++ N TPL A+ G L N DIT
Sbjct: 146 KNGANKDMQNNR--EETPLFLAAREGSYETAKVLLDHFANRDIT 187
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 21/171 (12%)
Query: 749 TLRNFNNRT---ALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPL---LSSCRQGLYE 802
+L N +RT AL+ AA + D K LL+A AD +I D +PL +S+ QG+++
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 75
Query: 803 IVDTLLEYNADTNLRTIKH-GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
I L N T+L H G+T L AA +++ L+ +AD+NA D GK A H
Sbjct: 76 I----LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 131
Query: 862 ACQAKNWDIVTFLLDAGSNIEKATKYRMT----------FESSKVVEKHVA 902
A N D LL G+N + T +E++KV+ H A
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 312 FDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
F Y N + G T LH+A R + K LL+ AD N ++ G TPL A++ +
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69
Query: 372 CLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCS 431
VF L+ + + +++ + DG TPL +
Sbjct: 70 AQGVFQILIRN------------------------------RATDLDARMHDGTTPLILA 99
Query: 432 IKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLG 490
+ A + +I + AD+ A G +ALH A N+ L+K+ + + +N+
Sbjct: 100 AR-LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158
Query: 491 KTPIYFAIKNNHLEIFNLLL 510
+TP++ A + E +LL
Sbjct: 159 ETPLFLAAREGSYETAKVLL 178
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 803 IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
++ + A + +T + G TALH AA +++ D K LL+ +AD N +D G+ H+A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 863 CQAKNWDIVTFLL 875
A + L+
Sbjct: 66 VSADAQGVFQILI 78
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA-D 780
T LH A+ R +D A+ L+E +AD +++ RT L+ A + + + L++ A D
Sbjct: 27 TALHLAA-RYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 781 PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
D T+PL+ + R + +++ L+ +AD N G +ALH AA N +D +
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVV 143
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
LLK A+ + ++ + A + +++ LLD +N
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKN--DSPLHLACATGNMDM--ITY 604
N D G T LH A ++ + L+ ++AD + N +PLH A + + I
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 605 AMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR 664
+ D++ G TPL +A ++ L+N+ + DVN G +AL +A
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNN 137
Query: 665 LDLVEILLEANADVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVNLTN 715
+D +LL+ A+ ++ + TPL+ A ++ S + K+L+ + A+ ++T+
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLA-AREGSYETAKVLLDHFANRDITD 188
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 46/172 (26%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A + ++D AK L++ N+ D N R TPLH+A+ +
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQD-----NMGR------TPLHAAVSADAQGV 73
Query: 274 VKLLLEK-----------GANPL------AIE----------------KSRNRTALHVAA 300
++L+ G PL A+E ++ALH AA
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133
Query: 301 IVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
V +VD +L GA K ++QN TPL +A R E K+LLD A+
Sbjct: 134 AVNNVDAAVVLLKNGANK--DMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 552 DNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDMITYAMKYF 609
D +G TPL+ A+ N +E+ LI+ ADI + +DSP A A G +++ Y +K+
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95
Query: 610 --DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKR--- 664
D+N N G L A G ++ VK LL D++ + G TAL A +
Sbjct: 96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155
Query: 665 --LDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKY 707
D+V++L+E AD ++ D + + +I K+L +Y
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 16/155 (10%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G TPL+IA +EI K L+D+GADIN N +P A AQ E+ Y++ H
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH---- 94
Query: 387 SVPEGER------TALHMASQFGNLEMVNYLLK--HININHQDKDGWTPLTCSIKGQASL 438
+ P+ + AL A++ G+++ V LL+ +I+ Q+ G+T L ++ +
Sbjct: 95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154
Query: 439 EVFHSII----EAGADIKAKLMDGTTALHLACYFG 469
+++ I+ E GAD K G TA+ A G
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 257 ETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
E +TPL+ A+ N+DIE+ K L+++GA+ + ++ S + + A +I+ + + A
Sbjct: 38 EGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKH-A 95
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKG-ADINSGNDDGCTPLFCAIA-----Q 370
+N N G L A + ++ VK+LL+ G DI+ ND G T L A+ Q
Sbjct: 96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155
Query: 371 NCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKH 414
++ L+ +G D S+ + RTA+ A+Q G E+ L ++
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
Query: 634 VKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALM 693
VK +L V+ +G+T L A ++ +++ + L++ AD+NL + Y
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80
Query: 694 KDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNF 753
+I+ ++K+ A +L Y L A+ +G +++ + L+E+ DI +N
Sbjct: 81 AQGRTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNV-KLLLEDGREDIDFQND 138
Query: 754 NNRTALNFAAF---GNNL--DLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLL 808
TAL A GN L D++K L++ GAD I D + + + ++G EI L
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 809 EYN 811
+YN
Sbjct: 199 QYN 201
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 40/223 (17%)
Query: 331 LHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE 390
L A +R ++ +IL D ++ + +G TPL A+ N +E+ L++ G D+++
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN 69
Query: 391 GERTALHM-ASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGA 449
+ ++ A G E++ Y+LKH TP
Sbjct: 70 SISDSPYLYAGAQGRTEILAYMLKH----------ATP---------------------- 97
Query: 450 DIKAKLMDGTTALHLACYFGNLAMVNYLVK--HIDINSENDLGKTPIYFAI---KNNHL- 503
D+ G AL A G++ V L++ DI+ +ND G T + A+ + N L
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157
Query: 504 -EIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
+I LL++ GAD ++K S T + A + E+ L +
Sbjct: 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 686 TPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECN 745
TPL A+ + ++I K L+ GAD+NL N +P YA +G +I ++++
Sbjct: 41 TPLNIAVHNN-DIEIAKALIDRGADINLQNSIS--DSPYLYAGAQGRT-EILAYMLKHAT 96
Query: 746 ADITLRNFNNRTALNFAAFGNNLDLLKFLLKAG-ADPDILDLKDTSPLLSSC--RQG--L 800
D+ N AL AA ++D +K LL+ G D D + + L+ + R+G L
Sbjct: 97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 801 YE-IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
Y+ IV L+E AD +++ G TA+ A +I K+L +YN
Sbjct: 157 YQDIVKLLMENGADQSIKD-NSGRTAMDYANQKGYTEISKILAQYN 201
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 212 SQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDI 271
++G L A+ +IAK L+D+G +NL + +D+P A
Sbjct: 37 TEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-----------ISDSPYLYAGAQGRT 85
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
E++ +L+ L AL AA +D VKLL + G E ++ QN G T L
Sbjct: 86 EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQNDFGYTAL 144
Query: 332 --HIACRRK---CLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNH 382
+ R +IVK+L++ GAD + ++ G T + A + E+ L +
Sbjct: 145 IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
D +D + +PL + EI L++ AD NL+ S L+ A + +I+ +
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA-QGRTEILAYM 91
Query: 842 LKY-NADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
LK+ D+N ++YG A A + + D V LL+ G
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
SPL +CR+G +V+ L+ A N+ + T LH AA H DI++ LL+Y ADIN
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMN-RGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKY-RMTFESSKVVEKHVAKLRA 906
A +++G + H AC + L+ G+ + KY M + +K + + + RA
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 152
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 633 AVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN-LGDGTYTPLYTA 691
AV+ L+ D+N G + L +AC + R +VE+L+ A +N + G TPL+ A
Sbjct: 15 AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 74
Query: 692 LMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRG 731
DI++ L++Y AD+N NE + PLHYA + G
Sbjct: 75 -ASHGHRDIVQKLLQYKADINAVNE--HGNVPLHYACFWG 111
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 565 GNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITY-AMKYFDVNIENDIGETP 621
GN + V L N+ D+ + SPLH AC G ++ M+ +N+ N +TP
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 622 LHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNL 680
LH+A SHG + V+ LL K D+N + G+ L +AC+ + + E L+ A V++
Sbjct: 71 LHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 738 RFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCR 797
R ++ D+ + + + L++A +++ L+ GA ++++ D +PL +
Sbjct: 17 RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 76
Query: 798 QGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKI 857
G +IV LL+Y AD N +HG+ LH A F Q + + L+ A ++ +KYG++
Sbjct: 77 HGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 135
Query: 858 AFHSA 862
A
Sbjct: 136 PVDKA 140
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V+L L+ N L + LH A +V++L GA +NV N TPLH+
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHL 73
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV 388
A +IV+ LL ADIN+ N+ G PL A +V LV +G +S+
Sbjct: 74 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 466 CYFGNLAMVNYLVKHI--DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN 523
C GN V + + D+N +D G +P+++A + + +L+ GA + V + +
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 524 FTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADIT 582
T LH+A ++V LL + +N + G PLH A Q +V L+ + A ++
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
Query: 583 M 583
+
Sbjct: 128 I 128
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 308 VKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCA 367
V+L D E +N + G +PLH ACR +V++L+ +GA IN N TPL A
Sbjct: 16 VRLWLD-NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 74
Query: 368 IAQNCLEVFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYLL 412
+ ++ L+ + D+ +V E LH A +G ++ L+
Sbjct: 75 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
+PLH A +V++L+ +GA + + + T LH+AA DIV+ L Y A+
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-- 92
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPL 364
+N N G PLH AC ++ + L+ GA ++ N G P+
Sbjct: 93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 36/163 (22%)
Query: 335 CRRKCLEIVKILLDKGA-DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV-PEGE 392
CR V++ LD D+N G+D G +PL A + V L+ G ++V G+
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 393 RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
T LH+A+ G+ ++V LL++ ADI
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQY---------------------------------KADIN 94
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKHIDINSE-NDLGKTPI 494
A G LH AC++G + LV + + S N G+ P+
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 458 GTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G + LH AC G A+V L+ + IN N TP++ A + H +I LL+ AD+
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLS 544
+ LH AC + ++ L++
Sbjct: 94 NAVNEHGNVPLHYACFWGQDQVAEDLVA 121
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 752 NFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYN 811
N T L+ A+ ++ +++LL+ G+DP++ D +PL +C G ++V+ LL++
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 812 ADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG 855
A N ++ S LH AA + +DI+KLLL Y A NA + +G
Sbjct: 67 ALVNTTGYQNDS-PLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
N GET LH+A G + +V++LL + D N K G T L AC L +VE+LL+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 675 NADVNL-GDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHY 726
A VN G +PL+ A K+ +DI+K+L+ YGA N N + + P+ Y
Sbjct: 66 KALVNTTGYQNDSPLHDA-AKNGHVDIVKLLLSYGASRNAVN--IFGLRPVDY 115
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 291 RNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKG 350
R T LH+A+I + V+ L G++ NV++ AG TPLH AC L++V++LL
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDP--NVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 351 ADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGC 384
A +N+ +PL A +++ L+++G
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 581 ITMYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLN 639
T ++ ++ LH+A G++ + Y ++ D N+++ G TPLH A +HG L+ V+ LL
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 640 TKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN 679
K + VN + L A + +D+V++LL A N
Sbjct: 65 HKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
+T LH A + DI V+ LL+ G++P ++ T LH A + +V+LL + A
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKA-- 67
Query: 319 SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPL 364
VN +PLH A + ++IVK+LL GA N+ N G P+
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G T LH+A G++ V YL+++ D N ++ G TP++ A + HL++ LLL+ A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSH 545
N + LH A + +++V LLS+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 430 CSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHID-INSEND 488
SIKG + +++ G+D K G T LH AC G+L +V L++H +N+
Sbjct: 17 ASIKGD--IPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY 74
Query: 489 LGKTPIYFAIKNNHLEIFNLLLKLGA 514
+P++ A KN H++I LLL GA
Sbjct: 75 QNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 30/122 (24%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHI 546
N G+T ++ A + LL+ G+D VK + +T LH AC +++V LL H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 547 GVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAM 606
L+N+ T Y+NDSPLH A G++D++ +
Sbjct: 67 A--------------------------LVNT----TGYQNDSPLHDAAKNGHVDIVKLLL 96
Query: 607 KY 608
Y
Sbjct: 97 SY 98
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 804 VDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSAC 863
V+ LL+ +D N++ G T LH A H L +++LLL++ A +N H A
Sbjct: 26 VEYLLQNGSDPNVKD-HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84
Query: 864 QAKNWDIVTFLLDAGSN 880
+ + DIV LL G++
Sbjct: 85 KNGHVDIVKLLLSYGAS 101
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 324 NVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG 383
N G T LHIA + + V+ LL G+D N + G TPL A L+V L+ H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 384 CDLSVPEGER-TALHMASQFGNLEMVNYLLKH 414
++ + + LH A++ G++++V LL +
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
T LH AS +GD + L + +D +++ T L+ A +L +++ LL+ A
Sbjct: 12 TLLHIASIKGDIPSVEYLL--QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTI 819
+ ++ SPL + + G +IV LL Y A N I
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 552 DNKGCTPLHCAIVGNQLEVFNHLINSNAD--ITMYKNDSPLHLACATGNMDMITYAMKYF 609
+++G T LH A + + +L+ + +D + + +PLH AC G++ ++ +++
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 610 D-VNIENDIGETPLHVAVSHGCLEAVKFLLN 639
VN ++PLH A +G ++ VK LL+
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLL 875
G T LH A+ + ++ LL+ +D N +D G H AC + +V LL
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 257 ETDTPLHSAILNSDIELVKLLLEKGANPLAI 287
+ D+PLH A N +++VKLLL GA+ A+
Sbjct: 75 QNDSPLHDAAKNGHVDIVKLLLSYGASRNAV 105
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
SPL +CR+G +V+ L+ A N+ + T LH AA H DI++ LL+Y ADIN
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMN-RGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKY-RMTFESSKVVEKHVAKLRA 906
A +++G + H AC + L+ G+ + KY M + +K + + + RA
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 633 AVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN-LGDGTYTPLYTA 691
AV+ L+ D+N G + L +AC + R +VE+L+ A +N + G TPL+ A
Sbjct: 20 AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 79
Query: 692 LMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRG 731
DI++ L++Y AD+N NE + PLHYA + G
Sbjct: 80 -ASHGHRDIVQKLLQYKADINAVNE--HGNVPLHYACFWG 116
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 565 GNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITY-AMKYFDVNIENDIGETP 621
GN + V L N+ D+ + SPLH AC G ++ M+ +N+ N +TP
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 622 LHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNL 680
LH+A SHG + V+ LL K D+N + G+ L +AC+ + + E L+ A V++
Sbjct: 76 LHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 738 RFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCR 797
R ++ D+ + + + L++A +++ L+ GA ++++ D +PL +
Sbjct: 22 RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81
Query: 798 QGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKI 857
G +IV LL+Y AD N +HG+ LH A F Q + + L+ A ++ +KYG++
Sbjct: 82 HGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Query: 858 AFHSA 862
A
Sbjct: 141 PVDKA 145
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V+L L+ N L + LH A +V++L GA +NV N TPLH+
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHL 78
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV 388
A +IV+ LL ADIN+ N+ G PL A +V LV +G +S+
Sbjct: 79 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 466 CYFGNLAMVNYLVKHI--DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN 523
C GN V + + D+N +D G +P+++A + + +L+ GA + V + +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 524 FTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADIT 582
T LH+A ++V LL + +N + G PLH A Q +V L+ + A ++
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
Query: 583 M 583
+
Sbjct: 133 I 133
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 308 VKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCA 367
V+L D E +N + G +PLH ACR +V++L+ +GA IN N TPL A
Sbjct: 21 VRLWLD-NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 79
Query: 368 IAQNCLEVFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYLL 412
+ ++ L+ + D+ +V E LH A +G ++ L+
Sbjct: 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
+PLH A +V++L+ +GA + + + T LH+AA DIV+ L Y A+
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-- 97
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPL 364
+N N G PLH AC ++ + L+ GA ++ N G P+
Sbjct: 98 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 36/163 (22%)
Query: 335 CRRKCLEIVKILLDKGA-DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV-PEGE 392
CR V++ LD D+N G+D G +PL A + V L+ G ++V G+
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 393 RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
T LH+A+ G+ ++V LL++ ADI
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQY---------------------------------KADIN 99
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKHIDINSE-NDLGKTPI 494
A G LH AC++G + LV + + S N G+ P+
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 458 GTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G + LH AC G A+V L+ + IN N TP++ A + H +I LL+ AD+
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLS 544
+ LH AC + ++ L++
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVA 126
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 257 ETDTPLHSAILNSDIELVKLLLE-KGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYG 315
E D L A D+E VK L + N IE R T LH AA V +V+ L +G
Sbjct: 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 316 AEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEV 375
A+ V+ ++ GL PLH AC E+ ++L+ GA +N + TPL A A+ E+
Sbjct: 66 AD--VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 376 FNYLVNHGCD 385
L+ HG D
Sbjct: 124 CKLLLQHGAD 133
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 465 ACYFGNLAMVNYLVKHIDINSENDLGK--TPIYFAIKNNHLEIFNLLLKLGADVAVKMKS 522
A G++ V L +N + G+ TP++FA N + + LL+ GADV K K
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 523 NFTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LH AC + E+ L+ H VN+ D TPLH A + E+ L+ AD
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Query: 582 TMYKND--SPLHL 592
T D +PL L
Sbjct: 135 TKKNRDGNTPLDL 147
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGL--TPLHIACRRKCLEIVKILLDKGADINSG 356
AA V+ VK L +SVN +++ G TPLH A + +V+ LL GAD+++
Sbjct: 15 AAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 357 NDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE-GERTALHMASQFGNLEMVNYLLKH- 414
+ G PL A + EV LV HG ++V + + T LH A+ G E+ LL+H
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Query: 415 ININHQDKDGWTPL 428
+ +++DG TPL
Sbjct: 132 ADPTKKNRDGNTPL 145
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 390 EGERTALHMASQFGNLEMVNYLLKHININHQDKDGW--TPLTCSIKGQASLEVFHSIIEA 447
E +R L A++ G++E V L ++N +D +G TPL + G + V +++
Sbjct: 7 EADRQLLE-AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA-GYNRVSVVEYLLQH 64
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGK-TPIYFAIKNNHLEIF 506
GAD+ AK G LH AC +G+ + LVKH + + DL K TP++ A EI
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 507 NLLLKLGADVAVKMKSNFTCL 527
LLL+ GAD K + T L
Sbjct: 125 KLLLQHGADPTKKNRDGNTPL 145
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 748 ITLRNFNNR--TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
+ R+ R T L+FAA N + ++++LL+ GAD D PL ++C G YE+ +
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG 855
L+++ A N+ + T LH AA + +I KLLL++ AD +++ G
Sbjct: 93 LLVKHGAVVNVADLWK-FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 141
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIK-HGSTALHTAAFHNQLDIIKLLLKYNADINA 850
LL + + G E V L + N R I+ ST LH AA +N++ +++ LL++ AD++A
Sbjct: 12 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 851 EDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
+DK G + H+AC ++++ L+ G+ + A ++ T
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 587 DSPLHLACATGNMDMITYAMKYFDVNIENDIGE--TPLHVAVSHGCLEAVKFLLNTKNID 644
D L A G+++ + VN + G TPLH A + + V++LL D
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGAD 67
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKM 703
V+ K K G L AC ++ E+L++ A VN+ D +TPL+ A K +I K+
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEICKL 126
Query: 704 LVKYGADVNLTNE 716
L+++GAD N
Sbjct: 127 LLQHGADPTKKNR 139
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 39/169 (23%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-G 683
A G +E VK L ++++ ST L FA R+ +VE LL+ ADV+ D G
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 684 TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEE 743
PL+ A ++ ++LVK+GA VN+ + + TPLH A+ +G
Sbjct: 75 GLVPLHNACSYG-HYEVAELLVKHGAVVNVAD--LWKFTPLHEAAAKG------------ 119
Query: 744 CNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPL 792
++ K LL+ GADP + +PL
Sbjct: 120 -----------------------KYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+ ++PL + +V+ LL++ AD + + K G LH A + ++ +LL+K+ A
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD-KGGLVPLHNACSYGHYEVAELLVKHGA 99
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATK 886
+N D + H A ++I LL G++ K +
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 139
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 228 DIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAI 287
++A+LLV G +N+ D + TPLH A E+ KLLL+ GA+P
Sbjct: 89 EVAELLVKHGAVVNVAD-----------LWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Query: 288 EKSRN 292
+ N
Sbjct: 138 NRDGN 142
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 317 EKSVNVQNVAGL---------TPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCA 367
EKS+N QN+ L TPL +AC + L++ + + +G T L A
Sbjct: 17 EKSIN-QNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWA 75
Query: 368 IAQNCLEVFNYLVNHGCDLSVPE-GERTALHMASQFGNLEMVNYLLKH-ININHQDKDGW 425
+ N L + L++ G +++ + +T L + FG EM +LL+H N+N ++ +G
Sbjct: 76 VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
Query: 426 TPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMV 474
TPL + K S E+ ++E GADI A+ + G TA A FG ++
Sbjct: 136 TPLIVASKYGRS-EIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 460 TALHLACYFGNLAMVNYLVKHIDINSENDL-GKTPIYFAIKNNHLEIFNLLLKLGADVAV 518
T L +AC G ++ LV++ D + D+ G T + +A+KNN L I LL G++V
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 519 KMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDN--KGCTPLHCAIVGNQLEVFNHLIN 576
K S T L + F EM FLL H G N+ D +G TPL A + E+ L+
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Query: 577 SNADIT 582
ADI+
Sbjct: 156 LGADIS 161
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 393 RTALHMASQFGNLEMVNYLLKHIN-INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RT L +A G ++ L+++ + + +D +G T L ++K L + ++ G+++
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNN-RLGIAEKLLSKGSNV 94
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
K G T L + FG M +L++H ++N N G+TP+ A K EI LL
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 511 KLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+LGAD++ + + T A F E++
Sbjct: 155 ELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 718 CYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKA 777
Y TPL A G N I + LVE + + ++ TAL +A N L + + LL
Sbjct: 33 SYNRTPLMVACMLGMENAIDK-LVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 778 GADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDI 837
G++ + D +PL+ S G E+ LLE+ A+ N R + G T L A+ + + +I
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEI 149
Query: 838 IKLLLKYNADINAEDKYGKIAFHSA 862
+K LL+ ADI+A D G A SA
Sbjct: 150 VKKLLELGADISARDLTGLTAEASA 174
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 609 FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNID-VNHKTKDGSTALFFACYDKRLDL 667
F N + TPL VA G A+ L+ +N D + K +GSTAL +A + RL +
Sbjct: 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLV--ENFDKLEDKDIEGSTALIWAVKNNRLGI 83
Query: 668 VEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHY 726
E LL ++VN D TPL +++ S ++ L+++GA+VN N TPL
Sbjct: 84 AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS-EMSYFLLEHGANVNDRN--LEGETPLIV 140
Query: 727 ASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
AS G + + L E ADI+ R+ TA
Sbjct: 141 ASKYGRSEIVKKLL--ELGADISARDLTGLTA 170
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 51/176 (28%)
Query: 188 ALEEELTNIFKKFDLLEHPEYLSHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGV 247
+E + + + FD LE + +G AL WA++ + IA+ L+ KG +N D
Sbjct: 46 GMENAIDKLVENFDKLEDKDI----EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD--- 98
Query: 248 PLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDI 307
TPL +I+ E+ LLE GAN
Sbjct: 99 --------FSGKTPLMWSIIFGYSEMSYFLLEHGAN------------------------ 126
Query: 308 VKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTP 363
VN +N+ G TPL +A + EIVK LL+ GADI++ + G T
Sbjct: 127 ------------VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 523 NFTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLIN--SNA 579
N T L VAC + L+ + + +D +G T L A+ N+L + L++ SN
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 580 DITMYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLL 638
+ + +PL + G +M + +++ +VN N GETPL VA +G E VK LL
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 639 NTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE 673
D++ + G TA A R ++++I E
Sbjct: 155 EL-GADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 746 ADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
+++ ++F+ +T L ++ ++ FLL+ GA+ + +L+ +PL+ + + G EIV
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
LLE AD + R + G TA +A + ++IK+
Sbjct: 152 KLLELGADISARDLT-GLTAEASARIFGRQEVIKIF 186
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 257 ETDTPLHSAILNSDIELVKLLLE-KGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYG 315
E D L A D+E VK L + N IE R T LH AA V +V+ L +G
Sbjct: 9 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQHG 67
Query: 316 AEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEV 375
A+ V+ ++ GL PLH AC E+ ++L+ GA +N + TPL A A+ E+
Sbjct: 68 AD--VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 125
Query: 376 FNYLVNHGCD 385
L+ HG D
Sbjct: 126 CKLLLQHGAD 135
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 465 ACYFGNLAMVNYLVKHIDINSENDLGK--TPIYFAIKNNHLEIFNLLLKLGADVAVKMKS 522
A G++ V L +N + G+ TP++FA N + + LL+ GADV K K
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 523 NFTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LH AC + E+ L+ H VN+ D TPLH A + E+ L+ AD
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 136
Query: 582 TMYKND--SPLHL 592
T D +PL L
Sbjct: 137 TKKNRDGNTPLDL 149
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGL--TPLHIACRRKCLEIVKILLDKGADINSG 356
AA V+ VK L +SVN +++ G TPLH A + +V+ LL GAD+++
Sbjct: 17 AAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 357 NDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE-GERTALHMASQFGNLEMVNYLLKH- 414
+ G PL A + EV LV HG ++V + + T LH A+ G E+ LL+H
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 133
Query: 415 ININHQDKDGWTPL 428
+ +++DG TPL
Sbjct: 134 ADPTKKNRDGNTPL 147
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 390 EGERTALHMASQFGNLEMVNYLLKHININHQDKDGW--TPLTCSIKGQASLEVFHSIIEA 447
E +R L A++ G++E V L ++N +D +G TPL + G + V +++
Sbjct: 9 EADRQLLE-AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA-GYNRVSVVEYLLQH 66
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGK-TPIYFAIKNNHLEIF 506
GAD+ AK G LH AC +G+ + LVKH + + DL K TP++ A EI
Sbjct: 67 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 126
Query: 507 NLLLKLGADVAVKMKSNFTCL 527
LLL+ GAD K + T L
Sbjct: 127 KLLLQHGADPTKKNRDGNTPL 147
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 748 ITLRNFNNR--TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
+ R+ R T L+FAA N + ++++LL+ GAD D PL ++C G YE+ +
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG 855
L+++ A N+ + T LH AA + +I KLLL++ AD +++ G
Sbjct: 95 LLVKHGAVVNVADLWK-FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 143
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIK-HGSTALHTAAFHNQLDIIKLLLKYNADINA 850
LL + + G E V L + N R I+ ST LH AA +N++ +++ LL++ AD++A
Sbjct: 14 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 851 EDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
+DK G + H+AC ++++ L+ G+ + A ++ T
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 112
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 587 DSPLHLACATGNMDMITYAMKYFDVNIENDIGE--TPLHVAVSHGCLEAVKFLLNTKNID 644
D L A G+++ + VN + G TPLH A + + V++LL D
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGAD 69
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKM 703
V+ K K G L AC ++ E+L++ A VN+ D +TPL+ A K +I K+
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEICKL 128
Query: 704 LVKYGADVNLTNE 716
L+++GAD N
Sbjct: 129 LLQHGADPTKKNR 141
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 39/169 (23%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-G 683
A G +E VK L ++++ ST L FA R+ +VE LL+ ADV+ D G
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 684 TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEE 743
PL+ A ++ ++LVK+GA VN+ + + TPLH A+ +G
Sbjct: 77 GLVPLHNACSYG-HYEVAELLVKHGAVVNVAD--LWKFTPLHEAAAKG------------ 121
Query: 744 CNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPL 792
++ K LL+ GADP + +PL
Sbjct: 122 -----------------------KYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 784 LDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLK 843
++ + ++PL + +V+ LL++ AD + + K G LH A + ++ +LL+K
Sbjct: 40 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD-KGGLVPLHNACSYGHYEVAELLVK 98
Query: 844 YNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATK 886
+ A +N D + H A ++I LL G++ K +
Sbjct: 99 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 141
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 228 DIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAI 287
++A+LLV G +N+ D + TPLH A E+ KLLL+ GA+P
Sbjct: 91 EVAELLVKHGAVVNVAD-----------LWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 139
Query: 288 EKSRN 292
+ N
Sbjct: 140 NRDGN 144
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 417 INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
INH D++G+TPL + + V +++ GAD + +AL LAC G +V
Sbjct: 45 INHTDEEGFTPLMWA-AAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 103
Query: 477 LVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFAS 535
L+ +D+N + G TP+ +A+ NH++ +LL+ GAD ++ S + + +A
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 163
Query: 536 IEMVSFLLSHIGVNLQDNK 554
+ + SH+ LQ+ K
Sbjct: 164 RSVQQVIESHLLKLLQNIK 182
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 257 ETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
E TPL A + I +V+ LL+ GA+P + K R +AL +A DIVK+L D G
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGV 109
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVF 376
+ VN + G TPL A ++ VK+LL+ GAD D G + A+A V
Sbjct: 110 D--VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 167
Query: 377 NYLVNH 382
+ +H
Sbjct: 168 QVIESH 173
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 476 YLVKHID----INSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVAC 531
YL I+ IN ++ G TP+ +A + + + LL+ GAD + K + L +AC
Sbjct: 34 YLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC 93
Query: 532 EFASIEMVSFLLS-HIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS-- 588
++V LL + VN D G TPL A+ GN ++ L+ S AD T+ +
Sbjct: 94 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN 153
Query: 589 PLHLACATG 597
+ LA A G
Sbjct: 154 SMDLAVALG 162
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLS-VPEGERTALHMASQFGNLEMVNYL 411
IN +++G TPL A A + V +L+ +G D + +G +AL +A G ++V L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 412 LK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGN 470
L +++N D +G TPL ++ G ++ ++E+GAD + G ++ LA G
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 163
Query: 471 LAMVNYLVKHI 481
++ + H+
Sbjct: 164 RSVQQVIESHL 174
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 39/140 (27%)
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLEANADVNL-GDGTYTPLYTALMKDPSLDIIKM 703
+NH ++G T L +A ++ +VE LL+ AD L G G + L A K + DI+KM
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT-DIVKM 103
Query: 704 LVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAA 763
L+ +C D+ ++N T L +A
Sbjct: 104 LL-------------------------------------DCGVDVNEYDWNGGTPLLYAV 126
Query: 764 FGNNLDLLKFLLKAGADPDI 783
GN++ +K LL++GADP I
Sbjct: 127 HGNHVKCVKMLLESGADPTI 146
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 586 NDSPLHLACATGNMDMITYAMKYFDV-NIENDIGETPLHVAVSHGCLEAVKFLLNTKNID 644
N +H A G M + ++ +V N ++ G TPL A +HG + V+FLL D
Sbjct: 19 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGAD 77
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKM 703
K +AL AC D+V++LL+ DVN D TPL A+ + + +KM
Sbjct: 78 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKM 136
Query: 704 LVKYGADVNLTNEACYYMTPLHYA-SYR 730
L++ GAD + ++ Y L A YR
Sbjct: 137 LLESGADPTIETDSGYNSMDLAVALGYR 164
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 757 TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
T L +AA + +++FLL+ GADP +L S L +C +G +IV LL+ D N
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN- 112
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG 855
+G T L A N + +K+LL+ AD E G
Sbjct: 113 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 711 VNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDL 770
+N T+E + TPL +A+ G + FL++ AD L +AL+ A D+
Sbjct: 45 INHTDEEGF--TPLMWAAAHGQIA-VVEFLLQN-GADPQLLGKGRESALSLACSKGYTDI 100
Query: 771 LKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+K LL G D + D +PLL + + V LLE AD + T
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 148
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 785 DLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKY 844
D + +PL+ + G +V+ LL+ AD L K +AL A DI+K+LL
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKMLLDC 107
Query: 845 NADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN--IEKATKYR-------MTFES-S 894
D+N D G A + V LL++G++ IE + Y + + S
Sbjct: 108 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 167
Query: 895 KVVEKHVAKL 904
+V+E H+ KL
Sbjct: 168 QVIESHLLKL 177
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
AL A + TDI K+L+D GV +N D TPL A+ + ++ VK
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYD-----------WNGGTPLLYAVHGNHVKCVK 135
Query: 276 LLLEKGANP-LAIEKSRNRTALHVAAIVESVDIV 308
+LLE GA+P + + N L VA SV V
Sbjct: 136 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 169
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
T + G T L AA H Q+ +++ LL+ AD K + A AC DIV LLD
Sbjct: 47 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 106
Query: 877 AGSNI 881
G ++
Sbjct: 107 CGVDV 111
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 281 GANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGL--TPLHIACRRK 338
GA +++ S L AA V+ VK L +SVN +++ G TPLH A
Sbjct: 1 GAMGISLGNSEADRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYN 57
Query: 339 CLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE-GERTALH 397
+ +V+ LL GAD+++ + G PL A + EV LV HG ++V + + T LH
Sbjct: 58 RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 117
Query: 398 MASQFGNLEMVNYLLKH-ININHQDKDGWTPL 428
A+ G E+ LL+H + +++DG TPL
Sbjct: 118 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Query: 383 GCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGW--TPLTCSIKGQASLEV 440
G L E +R L A++ G++E V L ++N +D +G TPL + G + V
Sbjct: 4 GISLGNSEADRQLLE-AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA-GYNRVSV 61
Query: 441 FHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGK-TPIYFAIK 499
+++ GAD+ AK G LH AC +G+ + LVKH + + DL K TP++ A
Sbjct: 62 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 121
Query: 500 NNHLEIFNLLLKLGADVAVKMKSNFTCL 527
EI LLL+ GAD K + T L
Sbjct: 122 KGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 465 ACYFGNLAMVNYLVKHIDINSENDLGK--TPIYFAIKNNHLEIFNLLLKLGADVAVKMKS 522
A G++ V L +N + G+ TP++FA N + + LL+ GADV K K
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 78
Query: 523 NFTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LH AC + E+ L+ H VN+ D TPLH A + E+ L+ AD
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 138
Query: 582 TMYKND--SPLHL 592
T D +PL L
Sbjct: 139 TKKNRDGNTPLDL 151
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A + + +V+ LL+ GA+ A +K LH A ++ +LL +GA
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKG-GLVPLHNACSYGHYEVAELLVKHGA--V 104
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPL 364
VNV ++ TPLH A + EI K+LL GAD N DG TPL
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 748 ITLRNFNNR--TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
+ R+ R T L+FAA N + ++++LL+ GAD D PL ++C G YE+ +
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 96
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG 855
L+++ A N+ + T LH AA + +I KLLL++ AD +++ G
Sbjct: 97 LLVKHGAVVNVADLWK-FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 145
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIK-HGSTALHTAAFHNQLDIIKLLLKYNADINA 850
LL + + G E V L + N R I+ ST LH AA +N++ +++ LL++ AD++A
Sbjct: 16 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 851 EDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
+DK G + H+AC ++++ L+ G+ + A ++ T
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 114
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 53/221 (23%)
Query: 611 VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEI 670
+++ N + L A G +E VK L ++++ ST L FA R+ +VE
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 671 LLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASY 729
LL+ ADV+ D G PL+ A ++ ++LVK+GA VN+ + + TPLH A+
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSYG-HYEVAELLVKHGAVVNVAD--LWKFTPLHEAAA 121
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
+G ++ K LL+ GADP +
Sbjct: 122 KG-----------------------------------KYEICKLLLQHGADPTKKNRDGN 146
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAA 830
+PL L + DT+++ + G AL AA
Sbjct: 147 TPL--------------DLVKDGDTDIQDLLRGDAALLDAA 173
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 574 LINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGE--TPLHVAVSHGCL 631
L NS AD + + A G+++ + VN + G TPLH A + +
Sbjct: 7 LGNSEADRQLLE-------AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV 59
Query: 632 EAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYT 690
V++LL DV+ K K G L AC ++ E+L++ A VN+ D +TPL+
Sbjct: 60 SVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHE 118
Query: 691 ALMKDPSLDIIKMLVKYGADVNLTNE 716
A K +I K+L+++GAD N
Sbjct: 119 AAAKG-KYEICKLLLQHGADPTKKNR 143
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+ ++PL + +V+ LL++ AD + + K G LH A + ++ +LL+K+ A
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD-KGGLVPLHNACSYGHYEVAELLVKHGA 103
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATK 886
+N D + H A ++I LL G++ K +
Sbjct: 104 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 143
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 228 DIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANP 284
++A+LLV G +N+ D + TPLH A E+ KLLL+ GA+P
Sbjct: 93 EVAELLVKHGAVVNVAD-----------LWKFTPLHEAAAKGKYEICKLLLQHGADP 138
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD + K+GST LH AA + L+++KLLL+ AD+NA+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 852 DKYGKIAFHSACQAKNWDIVTFL 874
DK+GK AF + N D+ L
Sbjct: 69 DKFGKTAFDISIDNGNEDLAEIL 91
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGND 358
AA D V++L GA+ + +N G TPLH+A R LE+VK+LL+ GAD+N+ +
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKN--GSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
Query: 359 DGCTPLFCAI 368
G T +I
Sbjct: 71 FGKTAFDISI 80
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DV ++ G TPLH+A +G LE VK LL DVN + K G TA + + DL E
Sbjct: 31 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDKFGKTAFDISIDNGNEDLAE 89
Query: 670 IL 671
IL
Sbjct: 90 IL 91
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G+D+ KL++ A G V L+ + D+ +++ G TP++ A +N HLE+
Sbjct: 3 GSDLGKKLLE-------AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVV 55
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
LLL+ GADV + K T ++ + + ++ L
Sbjct: 56 KLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 829 AAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYR 888
AA Q D +++L+ AD+ A+DK G H A + + ++V LL+AG+++ K+
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 889 MT 890
T
Sbjct: 73 KT 74
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DV K K+GST L A + L++V++LLEA
Sbjct: 4 SDLGKKLLEAARA-GQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Query: 675 NADVNLGD 682
ADVN D
Sbjct: 62 GADVNAQD 69
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL-SH 545
+DLGK + A E+ +L+ GADVA K K+ T LH+A +E+V LL +
Sbjct: 4 SDLGKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 62
Query: 546 IGVNLQDNKGCTPLHCAI 563
VN QD G T +I
Sbjct: 63 ADVNAQDKFGKTAFDISI 80
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A R + V+IL+ GAD+ + + +G TPL A LEV L+ G D++ +
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 393 RTALHMASQFGNLEMVNYL 411
+TA ++ GN ++ L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++ +DK+G TPL + + LEV ++EAGAD+ A+
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR-NGHLEVVKLLLEAGADVNAQDKF 71
Query: 458 GTTALHLACYFGN 470
G TA ++ GN
Sbjct: 72 GKTAFDISIDNGN 84
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
L +A D E V++L+ GA+ A +K+ T LH+AA +++VKLL + GA+ VN
Sbjct: 11 LEAARAGQDDE-VRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGAD--VN 66
Query: 322 VQNVAGLTPLHIACRRKCLEIVKIL 346
Q+ G T I+ ++ +IL
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 356 GNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE-GERTALHMASQFGNLEMVNYLLK- 413
G+D G L A A EV L+ +G D++ + T LH+A++ G+LE+V LL+
Sbjct: 3 GSDLGKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Query: 414 HININHQDKDGWTPLTCSI 432
++N QDK G T SI
Sbjct: 62 GADVNAQDKFGKTAFDISI 80
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKMLV 705
H D L A + D V IL+ ADV D TPL+ A ++ L+++K+L+
Sbjct: 1 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLA-ARNGHLEVVKLLL 59
Query: 706 KYGADVN 712
+ GADVN
Sbjct: 60 EAGADVN 66
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 545 HIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMY-KNDS-PLHLACATGNMDMI 602
H+G +L G L A G EV L+ + AD+ KN S PLHLA G+++++
Sbjct: 1 HMGSDL----GKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVV 55
Query: 603 TYAMKY-FDVNIENDIGETPLHVAVSHG 629
++ DVN ++ G+T +++ +G
Sbjct: 56 KLLLEAGADVNAQDKFGKTAFDISIDNG 83
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G + DK N S TPLH A N +E+VK
Sbjct: 8 KKLLEAARAGQDDEVRILMANGADVAAKDK----NGS-------TPLHLAARNGHLEVVK 56
Query: 276 LLLEKGANPLAIEK 289
LLLE GA+ A +K
Sbjct: 57 LLLEAGADVNAQDK 70
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILD 785
+ R +D R L+ AD+ ++ N T L+ AA +L+++K LL+AGAD + D
Sbjct: 13 AARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
D +++L+ GADV ++ TPLH A+ G ++ + L+E AD+ ++ +TA
Sbjct: 20 DEVRILMANGADVAAKDKNGS--TPLHLAARNGHL-EVVKLLLE-AGADVNAQDKFGKTA 75
Query: 759 LNFAAFGNNLDLLKFL 774
+ + N DL + L
Sbjct: 76 FDISIDNGNEDLAEIL 91
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 417 INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
INH D++G+TPL + + V +++ GAD + +AL LAC G +V
Sbjct: 29 INHTDEEGFTPLMWA-AAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Query: 477 LVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFAS 535
L+ +D+N + G TP+ +A+ NH++ +LL+ GAD ++ S + + +A
Sbjct: 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147
Query: 536 IEMVSFLLSHIGVNLQDNK 554
+ + SH+ LQ+ K
Sbjct: 148 RSVQQVIESHLLKLLQNIK 166
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 257 ETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
E TPL A + I +V+ LL+ GA+P + K R +AL +A DIVK+L D G
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGV 93
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVF 376
+ VN + G TPL A ++ VK+LL+ GAD D G + A+A V
Sbjct: 94 D--VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 151
Query: 377 NYLVNH 382
+ +H
Sbjct: 152 QVIESH 157
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 476 YLVKHID----INSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVAC 531
YL I+ IN ++ G TP+ +A + + + LL+ GAD + K + L +AC
Sbjct: 18 YLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC 77
Query: 532 EFASIEMVSFLLS-HIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS-- 588
++V LL + VN D G TPL A+ GN ++ L+ S AD T+ +
Sbjct: 78 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN 137
Query: 589 PLHLACATG 597
+ LA A G
Sbjct: 138 SMDLAVALG 146
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLS-VPEGERTALHMASQFGNLEMVNYL 411
IN +++G TPL A A + V +L+ +G D + +G +AL +A G ++V L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 412 LK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGN 470
L +++N D +G TPL ++ G ++ ++E+GAD + G ++ LA G
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147
Query: 471 LAMVNYLVKHI 481
++ + H+
Sbjct: 148 RSVQQVIESHL 158
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 39/140 (27%)
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLEANADVNL-GDGTYTPLYTALMKDPSLDIIKM 703
+NH ++G T L +A ++ +VE LL+ AD L G G + L A K + DI+KM
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT-DIVKM 87
Query: 704 LVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAA 763
L+ +C D+ ++N T L +A
Sbjct: 88 LL-------------------------------------DCGVDVNEYDWNGGTPLLYAV 110
Query: 764 FGNNLDLLKFLLKAGADPDI 783
GN++ +K LL++GADP I
Sbjct: 111 HGNHVKCVKMLLESGADPTI 130
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 586 NDSPLHLACATGNMDMITYAMKYFDV-NIENDIGETPLHVAVSHGCLEAVKFLLNTKNID 644
N +H A G M + ++ +V N ++ G TPL A +HG + V+FLL D
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGAD 61
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKM 703
K +AL AC D+V++LL+ DVN D TPL A+ + + +KM
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKM 120
Query: 704 LVKYGADVNLTNEACYYMTPLHYA-SYR 730
L++ GAD + ++ Y L A YR
Sbjct: 121 LLESGADPTIETDSGYNSMDLAVALGYR 148
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 757 TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
T L +AA + +++FLL+ GADP +L S L +C +G +IV LL+ D N
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN- 96
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG 855
+G T L A N + +K+LL+ AD E G
Sbjct: 97 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 711 VNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDL 770
+N T+E + TPL +A+ G + FL++ AD L +AL+ A D+
Sbjct: 29 INHTDEEGF--TPLMWAAAHGQIA-VVEFLLQN-GADPQLLGKGRESALSLACSKGYTDI 84
Query: 771 LKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+K LL G D + D +PLL + + V LLE AD + T
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 785 DLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKY 844
D + +PL+ + G +V+ LL+ AD L K +AL A DI+K+LL
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKMLLDC 91
Query: 845 NADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN--IEKATKYR-------MTFES-S 894
D+N D G A + V LL++G++ IE + Y + + S
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 151
Query: 895 KVVEKHVAKL 904
+V+E H+ KL
Sbjct: 152 QVIESHLLKL 161
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
AL A + TDI K+L+D GV +N D TPL A+ + ++ VK
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYD-----------WNGGTPLLYAVHGNHVKCVK 119
Query: 276 LLLEKGANP-LAIEKSRNRTALHVAAIVESVDIV 308
+LLE GA+P + + N L VA SV V
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
T + G T L AA H Q+ +++ LL+ AD K + A AC DIV LLD
Sbjct: 31 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 90
Query: 877 AGSNI 881
G ++
Sbjct: 91 CGVDV 95
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 417 INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
INH D++G+TPL + + V +++ GAD + +AL LAC G +V
Sbjct: 27 INHTDEEGFTPLMWA-AAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 85
Query: 477 LVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFAS 535
L+ +D+N + G TP+ +A+ NH++ +LL+ GAD ++ S + + +A
Sbjct: 86 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 145
Query: 536 IEMVSFLLSHI 546
+ + SH+
Sbjct: 146 RSVQQVIESHL 156
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 257 ETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
E TPL A + I +V+ LL+ GA+P + K R +AL +A DIVK+L D G
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGV 91
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVF 376
+ VN + G TPL A ++ VK+LL+ GAD D G + A+A V
Sbjct: 92 D--VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 149
Query: 377 NYLVNH 382
+ +H
Sbjct: 150 QVIESH 155
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 476 YLVKHID----INSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVAC 531
YL I+ IN ++ G TP+ +A + + + LL+ GAD + K + L +AC
Sbjct: 16 YLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC 75
Query: 532 EFASIEMVSFLLS-HIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS-- 588
++V LL + VN D G TPL A+ GN ++ L+ S AD T+ +
Sbjct: 76 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN 135
Query: 589 PLHLACATG 597
+ LA A G
Sbjct: 136 SMDLAVALG 144
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLS-VPEGERTALHMASQFGNLEMVNYL 411
IN +++G TPL A A + V +L+ +G D + +G +AL +A G ++V L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 412 LK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGN 470
L +++N D +G TPL ++ G ++ ++E+GAD + G ++ LA G
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 145
Query: 471 LAMVNYLVKHI 481
++ + H+
Sbjct: 146 RSVQQVIESHL 156
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 39/140 (27%)
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLEANADVNL-GDGTYTPLYTALMKDPSLDIIKM 703
+NH ++G T L +A ++ +VE LL+ AD L G G + L A K + DI+KM
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT-DIVKM 85
Query: 704 LVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAA 763
L+ +C D+ ++N T L +A
Sbjct: 86 LL-------------------------------------DCGVDVNEYDWNGGTPLLYAV 108
Query: 764 FGNNLDLLKFLLKAGADPDI 783
GN++ +K LL++GADP I
Sbjct: 109 HGNHVKCVKMLLESGADPTI 128
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 586 NDSPLHLACATGNMDMITYAMKYFDV-NIENDIGETPLHVAVSHGCLEAVKFLLNTKNID 644
N +H A G M + ++ +V N ++ G TPL A +HG + V+FLL D
Sbjct: 1 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGAD 59
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD-GTYTPLYTALMKDPSLDIIKM 703
K +AL AC D+V++LL+ DVN D TPL A+ + + +KM
Sbjct: 60 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKM 118
Query: 704 LVKYGADVNLTNEACYYMTPLHYA-SYR 730
L++ GAD + ++ Y L A YR
Sbjct: 119 LLESGADPTIETDSGYNSMDLAVALGYR 146
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 757 TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
T L +AA + +++FLL+ GADP +L S L +C +G +IV LL+ D N
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN- 94
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG 855
+G T L A N + +K+LL+ AD E G
Sbjct: 95 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 711 VNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDL 770
+N T+E + TPL +A+ G + FL++ AD L +AL+ A D+
Sbjct: 27 INHTDEEGF--TPLMWAAAHGQIA-VVEFLLQN-GADPQLLGKGRESALSLACSKGYTDI 82
Query: 771 LKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+K LL G D + D +PLL + + V LLE AD + T
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 130
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 785 DLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKY 844
D + +PL+ + G +V+ LL+ AD L K +AL A DI+K+LL
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKMLLDC 89
Query: 845 NADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN--IEKATKYR-------MTFES-S 894
D+N D G A + V LL++G++ IE + Y + + S
Sbjct: 90 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 149
Query: 895 KVVEKHVAKL 904
+V+E H+ KL
Sbjct: 150 QVIESHLLKL 159
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
AL A + TDI K+L+D GV +N D TPL A+ + ++ VK
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYD-----------WNGGTPLLYAVHGNHVKCVK 117
Query: 276 LLLEKGANP-LAIEKSRNRTALHVAAIVESVDIV 308
+LLE GA+P + + N L VA SV V
Sbjct: 118 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 151
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
T + G T L AA H Q+ +++ LL+ AD K + A AC DIV LLD
Sbjct: 29 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 88
Query: 877 AGSNIEK 883
G ++ +
Sbjct: 89 CGVDVNE 95
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 45/270 (16%)
Query: 457 DGTTALHLACYFGNLAMVNYLVK----HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
DG TALHLA + +++L+ H ++ +NDLG+T ++ A L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 513 GADVAVKMKSNFTCLHVACEFASIEMVSFLL----SH----IGVNLQDNKGCTP--LHC- 561
GA V V + T LH+AC + LL SH L ++ CTP H
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 562 AIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETP 621
A V +Q N + D L N D G TP
Sbjct: 128 AAVDSQ---------PNPENEEEPRDEDWRLQLEAENYD-----------------GHTP 161
Query: 622 LHVAVSHGCLEAVKFLLNTKNIDVNHKTKD-GSTALFFACYDKRLDLVEILLEANADVNL 680
LHVAV H E V+ LL D+N G T L A + ++E+LL+A AD
Sbjct: 162 LHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Query: 681 G-DGTYTPLYTALMKDPSLDIIKMLVKYGA 709
G TPL +AL++ P+ + ++L +GA
Sbjct: 221 RMYGGRTPLGSALLR-PNPILARLLRAHGA 249
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 64/245 (26%), Positives = 100/245 (40%), Gaps = 30/245 (12%)
Query: 259 DTPLHSAILNSDIELVKLLL--EKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
DT LH A+++ + LL G L ++ +TALH+AAI+ V+ L+ GA
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVF 376
V V G T LH+ACR + +LL + + + +Q+C
Sbjct: 70 --GVLVAERGGHTALHLACRVRAHTCACVLLQP----RPSHPRDASDTYLTQSQDCTPDT 123
Query: 377 NYLVNHGCDLSVPEGER-------------------TALHMASQFGNLEMVNYLLKH-IN 416
++ PE E T LH+A + EMV L +
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183
Query: 417 INHQDKD-GWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVN 475
+N + G TPL +++ QA+ V +++AGAD A++ G T L A N +
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAA-SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242
Query: 476 YLVKH 480
L H
Sbjct: 243 LLRAH 247
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A+++ D E+V+LL + GA+ E + RT LH+A ++ +++LL GA+ +
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTP 363
+ G TPL A R + ++L GA D +P
Sbjct: 220 ARM--YGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 451 IKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINS-ENDLGKTPIYFAIKNNHLEIFNL 508
++A+ DG T LH+A + MV L D+N E G+TP++ A++ + L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 509 LLKLGADVAVKMKSNFTCLHVA 530
LLK GAD +M T L A
Sbjct: 211 LLKAGADPTARMYGGRTPLGSA 232
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 91/232 (39%), Gaps = 32/232 (13%)
Query: 587 DSPLHLACATGNMDMITYAM------KYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNT 640
D+ LHLA + + + + +Y D ++ND+G+T LH+A G V+ L
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLD--LQNDLGQTALHLAAILGEASTVEKLY-A 66
Query: 641 KNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN-------ADVNLG-------DGTYT 686
V + G TAL AC + +LL+ +D L D ++
Sbjct: 67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126
Query: 687 PLYTALMKDPSLDIIKMLVKYGADVNLTNEACYY--MTPLHYASYRGDCNDIARFLVEEC 744
P +P + D L EA Y TPLH A D + L+ +
Sbjct: 127 PAAVDSQPNPENE----EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR--LLRDA 180
Query: 745 NADITLRNFN-NRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSS 795
AD+ RT L+ A +L+ LLKAGADP +PL S+
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINA-EDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
G T LH A H ++++LL AD+N E G+ H A +A+ ++ LL AG++
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 29/211 (13%)
Query: 525 TCLHVACEFASIEMVSFLLS----HIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNAD 580
T LH+A + FLL H ++LQ++ G T LH A + + L + A
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 581 ITMYKN--DSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCL------- 631
+ + + + LHLAC + T A + + ++ S C
Sbjct: 71 VLVAERGGHTALHLAC---RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 632 EAVKFLLNTKN----------IDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLG 681
AV N +N + + + DG T L A K ++V +L +A AD+N
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 682 DGT--YTPLYTALMKDPSLDIIKMLVKYGAD 710
+ T TPL+ A+ + + ++++L+K GAD
Sbjct: 188 EPTCGRTPLHLAV-EAQAASVLELLLKAGAD 217
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 65/233 (27%), Positives = 91/233 (39%), Gaps = 38/233 (16%)
Query: 388 VPEGERTALHMASQFGNLEMVNYLLK----HININHQDKDGWTPL-TCSIKGQASLEVFH 442
V E TALH+A + +++LL H ++ Q+ G T L +I G+AS
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS--TVE 62
Query: 443 SIIEAGADIKAKLMDGTTALHLACYF----------------GNLAMVNYLVKHIDINSE 486
+ AGA + G TALHLAC A YL + D
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP- 121
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN----FTCLHVACEFASIEMVSFL 542
D P A ++ N D +++++ T LHVA EMV L
Sbjct: 122 -DTSHAP---AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-L 176
Query: 543 LSHIGVNLQDNK---GCTPLHCAIVGNQLEVFNHLINSNADIT--MYKNDSPL 590
L G +L + G TPLH A+ V L+ + AD T MY +PL
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 29.6 bits (65), Expect = 8.4, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 804 VDTLLEYNADTNLRTIKH--GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
+D LL ++A +++ G TALH AA + ++ L A + ++ G A H
Sbjct: 25 LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84
Query: 862 ACQAK 866
AC+ +
Sbjct: 85 ACRVR 89
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 45/270 (16%)
Query: 457 DGTTALHLACYFGNLAMVNYLVK----HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
DG TALHLA + +++L+ H ++ +NDLG+T ++ A L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 513 GADVAVKMKSNFTCLHVACEFASIEMVSFLL----SH----IGVNLQDNKGCTP--LHC- 561
GA V V + T LH+AC + LL SH L ++ CTP H
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 562 AIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETP 621
A V +Q N + D L N D G TP
Sbjct: 128 AAVDSQ---------PNPENEEEPRDEDWRLQLEAENYD-----------------GHTP 161
Query: 622 LHVAVSHGCLEAVKFLLNTKNIDVNHKTKD-GSTALFFACYDKRLDLVEILLEANADVNL 680
LHVAV H E V+ LL D+N G T L A + ++E+LL+A AD
Sbjct: 162 LHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Query: 681 G-DGTYTPLYTALMKDPSLDIIKMLVKYGA 709
G TPL +AL++ P+ + ++L +GA
Sbjct: 221 RMYGGRTPLGSALLR-PNPILARLLRAHGA 249
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 64/245 (26%), Positives = 100/245 (40%), Gaps = 30/245 (12%)
Query: 259 DTPLHSAILNSDIELVKLLL--EKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
DT LH A+++ + LL G L ++ +TALH+AAI+ V+ L+ GA
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVF 376
V V G T LH+ACR + +LL + + + +Q+C
Sbjct: 70 --GVLVAERGGHTALHLACRVRAHTCACVLLQP----RPSHPRDASDTYLTQSQDCTPDT 123
Query: 377 NYLVNHGCDLSVPEGER-------------------TALHMASQFGNLEMVNYLLKH-IN 416
++ PE E T LH+A + EMV L +
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183
Query: 417 INHQDKD-GWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVN 475
+N + G TPL +++ QA+ V +++AGAD A++ G T L A N +
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAA-SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242
Query: 476 YLVKH 480
L H
Sbjct: 243 LLRAH 247
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A+++ D E+V+LL + GA+ E + RT LH+A ++ +++LL GA+ +
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTP 363
+ G TPL A R + ++L GA D +P
Sbjct: 220 ARM--YGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 451 IKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINS-ENDLGKTPIYFAIKNNHLEIFNL 508
++A+ DG T LH+A + MV L D+N E G+TP++ A++ + L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 509 LLKLGADVAVKMKSNFTCLHVA 530
LLK GAD +M T L A
Sbjct: 211 LLKAGADPTARMYGGRTPLGSA 232
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 91/232 (39%), Gaps = 32/232 (13%)
Query: 587 DSPLHLACATGNMDMITYAM------KYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNT 640
D+ LHLA + + + + +Y D ++ND+G+T LH+A G V+ L
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLD--LQNDLGQTALHLAAILGEASTVEKLY-A 66
Query: 641 KNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN-------ADVNLG-------DGTYT 686
V + G TAL AC + +LL+ +D L D ++
Sbjct: 67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126
Query: 687 PLYTALMKDPSLDIIKMLVKYGADVNLTNEACYY--MTPLHYASYRGDCNDIARFLVEEC 744
P +P + D L EA Y TPLH A D + L+ +
Sbjct: 127 PAAVDSQPNPENE----EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR--LLRDA 180
Query: 745 NADITLRNFN-NRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSS 795
AD+ RT L+ A +L+ LLKAGADP +PL S+
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINA-EDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
G T LH A H ++++LL AD+N E G+ H A +A+ ++ LL AG++
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 29/211 (13%)
Query: 525 TCLHVACEFASIEMVSFLLS----HIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNAD 580
T LH+A + FLL H ++LQ++ G T LH A + + L + A
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 581 ITMYKN--DSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCL------- 631
+ + + + LHLAC + T A + + ++ S C
Sbjct: 71 VLVAERGGHTALHLAC---RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 632 EAVKFLLNTKN----------IDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLG 681
AV N +N + + + DG T L A K ++V +L +A AD+N
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 682 DGT--YTPLYTALMKDPSLDIIKMLVKYGAD 710
+ T TPL+ A+ + + ++++L+K GAD
Sbjct: 188 EPTCGRTPLHLAV-EAQAASVLELLLKAGAD 217
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 65/233 (27%), Positives = 91/233 (39%), Gaps = 38/233 (16%)
Query: 388 VPEGERTALHMASQFGNLEMVNYLLK----HININHQDKDGWTPL-TCSIKGQASLEVFH 442
V E TALH+A + +++LL H ++ Q+ G T L +I G+AS
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS--TVE 62
Query: 443 SIIEAGADIKAKLMDGTTALHLACYF----------------GNLAMVNYLVKHIDINSE 486
+ AGA + G TALHLAC A YL + D
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP- 121
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN----FTCLHVACEFASIEMVSFL 542
D P A ++ N D +++++ T LHVA EMV L
Sbjct: 122 -DTSHAP---AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-L 176
Query: 543 LSHIGVNLQDNK---GCTPLHCAIVGNQLEVFNHLINSNADIT--MYKNDSPL 590
L G +L + G TPLH A+ V L+ + AD T MY +PL
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 29.6 bits (65), Expect = 8.4, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 804 VDTLLEYNADTNLRTIKH--GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
+D LL ++A +++ G TALH AA + ++ L A + ++ G A H
Sbjct: 25 LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84
Query: 862 ACQAK 866
AC+ +
Sbjct: 85 ACRVR 89
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD N + K G T LH AA L+I+++LLK AD+NA+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 852 DKYGKIAFHSACQAKNWDIVTFL 874
DK+GK AF + N D+ L
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEIL 87
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGND 358
AA D V++L GA+ VN ++ G TPLH+A R LEIV++LL GAD+N+ +
Sbjct: 9 AARAGQDDEVRILMANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
Query: 359 DGCTPLFCAI 368
G T +I
Sbjct: 67 FGKTAFDISI 76
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIF 506
GAD+ AK DG T LHLA G+L +V L+K D+N+++ GKT +I N + ++
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLA 84
Query: 507 NLLLK 511
+L K
Sbjct: 85 EILQK 89
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-E 392
A R + V+IL+ GAD+N+ + DG TPL A + LE+ L+ G D++ +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 393 RTALHMASQFGNLEMVNYLLK 413
+TA ++ GN ++ L K
Sbjct: 69 KTAFDISIDNGNEDLAEILQK 89
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 616 DIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
D+G+ L A + G + V+ L+ DVN K KDG T L A + L++VE+LL+A
Sbjct: 1 DLGKKLLEAARA-GQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 676 ADVNLGDGTYTPLYTALMKDPSLDIIKMLVK 706
ADVN D + + + + D+ ++L K
Sbjct: 59 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++N +DKDG+TPL + + + LE+ +++AGAD+ A+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAQDKF 67
Query: 458 GTTALHLACYFGNLAMVNYLVK 479
G TA ++ GN + L K
Sbjct: 68 GKTAFDISIDNGNEDLAEILQK 89
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+++ G TP++ A + HLEI +LLK GADV + K T ++ + + ++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEI 86
Query: 542 L 542
L
Sbjct: 87 L 87
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN ++ G TPLH+A G LE V+ LL DVN + K G TA + + DL E
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTAFDISIDNGNEDLAE 85
Query: 670 ILLEA 674
IL +A
Sbjct: 86 ILQKA 90
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 826 LHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKAT 885
L AA Q D +++L+ AD+NA+DK G H A + + +IV LL AG+++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 886 KYRMT 890
K+ T
Sbjct: 66 KFGKT 70
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 488 DLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL-SHI 546
DLGK + A E+ +L+ GADV K K +T LH+A +E+V LL +
Sbjct: 1 DLGKKLLEAARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 547 GVNLQDNKGCTPLHCAI 563
VN QD G T +I
Sbjct: 60 DVNAQDKFGKTAFDISI 76
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD + D +PL + R+G EIV+ LL+ AD N + K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD-KF 67
Query: 822 GSTALHTAAFHNQLDIIKLLLK 843
G TA + + D+ ++L K
Sbjct: 68 GKTAFDISIDNGNEDLAEILQK 89
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
D +++L+ GADVN ++ Y TPLH A+ G + L + AD+ ++ +TA
Sbjct: 16 DEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLL--KAGADVNAQDKFGKTA 71
Query: 759 LNFAAFGNNLDLLKFLLKA 777
+ + N DL + L KA
Sbjct: 72 FDISIDNGNEDLAEILQKA 90
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYK--NDSPLHLACATGNMDM 601
VN +D G TPLH A LE+ L+ + AD+ + ++ GN D+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL 83
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
L +A D E V++L+ GA+ A +K T LH+AA ++IV++L GA+ VN
Sbjct: 7 LEAARAGQDDE-VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD--VN 62
Query: 322 VQNVAGLTPLHIACRRKCLEIVKIL 346
Q+ G T I+ ++ +IL
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILD 785
+ R +D R L+ AD+ ++ + T L+ AA +L++++ LLKAGAD + D
Sbjct: 9 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 4/155 (2%)
Query: 394 TALHMASQFGNLEMVNYLLK-HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGA-DI 451
TALH+A+++ + LL+ + QD G TPL ++ A VF ++ A D+
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQ-GVFQILLRNRATDL 82
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
A++ DGTT L LA M+ L+ H D+N+ +DLGK+ +++A N+++ +LL
Sbjct: 83 DARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 142
Query: 511 KLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
K GA+ ++ T L +A S E LL H
Sbjct: 143 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 177
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 6/200 (3%)
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKML 704
N + G TAL A R D + LLEA+AD + D TPL+ A+ D + ++L
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQ-GVFQIL 74
Query: 705 VKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAF 764
++ A +L TPL A+ R + L+ +AD+ + ++AL++AA
Sbjct: 75 LRNRA-TDLDARMHDGTTPLILAA-RLALEGMLEDLINS-HADVNAVDDLGKSALHWAAA 131
Query: 765 GNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGST 824
NN+D LLK GA+ D+ + K+ +PL + R+G YE LL++ A+ ++ T
Sbjct: 132 VNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRL 190
Query: 825 ALHTAAFHNQLDIIKLLLKY 844
A DI++LL +Y
Sbjct: 191 PRDIAQERMHHDIVRLLDEY 210
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 3/164 (1%)
Query: 587 DSPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDV 645
++ LHLA D ++ D I++++G TPLH AVS + LL + D+
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLV 705
+ + DG+T L A ++E L+ ++ADVN D ++D +L+
Sbjct: 83 DARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 142
Query: 706 KYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADIT 749
K GA+ ++ N TPL A+ G L N DIT
Sbjct: 143 KNGANKDMQNNK--EETPLFLAAREGSYETAKVLLDHFANRDIT 184
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 525 TCLHVACEFASIEMVSFLL-SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNA---D 580
T LH+A ++ + LL + +QDN G TPLH A+ + VF L+ + A D
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 581 ITMYKNDSPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLEAVKFLL- 638
M+ +PL LA M+ + + DVN +D+G++ LH A + ++A LL
Sbjct: 84 ARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 143
Query: 639 NTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
N N D+ + ++ T LF A + + ++LL+ A+ ++ D
Sbjct: 144 NGANKDMQNNKEE--TPLFLAAREGSYETAKVLLDHFANRDITD 185
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 749 TLRNFNNRT---ALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPL---LSSCRQGLYE 802
+L N +RT AL+ AA + D K LL+A AD I D +PL +S+ QG+++
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQ 72
Query: 803 IVDTLLEYNADTNLRTIKH-GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
I L N T+L H G+T L AA +++ L+ +AD+NA D GK A H
Sbjct: 73 I----LLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHW 128
Query: 862 ACQAKNWDIVTFLLDAGSNIEKATKYRMT----------FESSKVVEKHVA 902
A N D LL G+N + T +E++KV+ H A
Sbjct: 129 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 179
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 803 IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
++ + A + +T + G TALH AA +++ D K LL+ +AD +D G+ H+A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 863 CQAKNWDIVTFLL 875
A + LL
Sbjct: 63 VSADAQGVFQILL 75
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 312 FDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
F Y N + G T LH+A R + K LL+ AD ++ G TPL A++ +
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSAD 66
Query: 372 CLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCS 431
VF L+ + + +++ + DG TPL
Sbjct: 67 AQGVFQILLRN------------------------------RATDLDARMHDGTTPLI-- 94
Query: 432 IKGQASLE-VFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDL 489
+ + +LE + +I + AD+ A G +ALH A N+ L+K+ + + +N+
Sbjct: 95 LAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNK 154
Query: 490 GKTPIYFAIKNNHLEIFNLLL 510
+TP++ A + E +LL
Sbjct: 155 EETPLFLAAREGSYETAKVLL 175
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA-D 780
T LH A+ R +D A+ L+E +AD +++ RT L+ A + + + LL+ A D
Sbjct: 24 TALHLAA-RYSRSDAAKRLLE-ASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 781 PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
D T+PL+ + R L +++ L+ +AD N G +ALH AA N +D +
Sbjct: 82 LDARMHDGTTPLILAARLALEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVV 140
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
LLK A+ + ++ + A + +++ LLD +N
Sbjct: 141 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 180
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A + ++D AK L++ + D N R TPLH+A+ +
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQD-----NMGR------TPLHAAVSADAQGV 70
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
++LL A L T L +AA + +++ L + A+ VN + G + LH
Sbjct: 71 FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHAD--VNAVDDLGKSALHW 128
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNH 382
A ++ +LL GA+ + N+ TPLF A + E L++H
Sbjct: 129 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 177
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 262 LHSAILNSDIELVKLLLEKG-ANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSV 320
L A D++ V+ LL + +P A+ + +TAL V + S I L GA S
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVM-MFGSTAIALELLKQGA--SP 61
Query: 321 NVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV 380
NVQ+ +G +P+H A R L+ +K+L++ GAD+N + G P+ A+ + V ++L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 381 NHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKHI 415
DL + T L +A Q G ++V+ L H+
Sbjct: 122 AES-DLHRRDARGLTPLELALQRGAQDLVDILQGHM 156
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 36/148 (24%)
Query: 727 ASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDL 786
A+ RGD ++ R L E L F +TAL FG+ L+ LLK GA P++ D
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFG-KTALQVMMFGSTAIALE-LLKQGASPNVQDT 66
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
TSP+ + R G LD +K+L+++ A
Sbjct: 67 SGTSPVHDAARTGF----------------------------------LDTLKVLVEHGA 92
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFL 874
D+N D G + H A Q + +V+FL
Sbjct: 93 DVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G TAL + FG+ A+ L+K N ++ G +P++ A + L+ +L++ GADV
Sbjct: 36 GKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAI 563
V + +H+A + +VSFL + ++ +D +G TPL A+
Sbjct: 95 NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELAL 141
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
+TAL + FG+ + LLK + N QD G +P+ + + L+ ++E GAD+
Sbjct: 37 KTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAAR-TGFLDTLKVLVEHGADV 94
Query: 452 KAKLMDGTTAL--HLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLL 509
DGT AL HLA G+ A+V++L D++ + G TP+ A++ ++ ++L
Sbjct: 95 NVP--DGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS--PLHLACATGNMDMITYAM 606
N+QD G +P+H A L+ L+ AD+ + P+HLA G+ ++++
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 607 KYFDVNIENDIGETPLHVAVSHGCLEAVKFL 637
D++ + G TPL +A+ G + V L
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
A + G ++ V+ LL+ + + + + G TAL + +E LL+ A N+ D +
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTS 67
Query: 685 YT-PLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEE 743
T P++ A + LD +K+LV++GADVN+ + P+H A G + FL E
Sbjct: 68 GTSPVHDA-ARTGFLDTLKVLVEHGADVNVPDGTG--ALPIHLAVQEGH-TAVVSFLAAE 123
Query: 744 CNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+D+ R+ T L A DL+ L
Sbjct: 124 --SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
+P+H A ++ +K+L+E GA+ + + +H+A +V L AE
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFL---AAESD 125
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKIL 346
++ ++ GLTPL +A +R ++V IL
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 37.0 bits (84), Expect = 0.063, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 509 LLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQ 567
LLK GA V+ S + +H A ++ + L+ H VN+ D G P+H A+
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 568 LEVFNHLINSNADITMYKND----SPLHLACATGNMDMI 602
V + L A+ +++ D +PL LA G D++
Sbjct: 114 TAVVSFLA---AESDLHRRDARGLTPLELALQRGAQDLV 149
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N+++ G +P+H A G L+ +K L+ DVN G+ + A + +V
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVS-F 119
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKML 704
L A +D++ D TPL AL + D++ +L
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQ-DLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 262 LHSAILNSDIELVKLLLEKG-ANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSV 320
L A D++ V+ LL + +P A+ + +TAL V + S I L GA S
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVM-MFGSTAIALELLKQGA--SP 67
Query: 321 NVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV 380
NVQ+ +G +P+H A R L+ +K+L++ GAD+N + G P+ A+ + V ++L
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 381 NHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKHI 415
DL + T L +A Q G ++V+ L H+
Sbjct: 128 AES-DLHRRDARGLTPLELALQRGAQDLVDILQGHM 162
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 36/148 (24%)
Query: 727 ASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDL 786
A+ RGD ++ R L E L F +TAL FG+ L+ LLK GA P++ D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFG-KTALQVMMFGSTAIALE-LLKQGASPNVQDT 72
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
TSP+ + R G LD +K+L+++ A
Sbjct: 73 SGTSPVHDAARTGF----------------------------------LDTLKVLVEHGA 98
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFL 874
D+N D G + H A Q + +V+FL
Sbjct: 99 DVNVPDGTGALPIHLAVQEGHTAVVSFL 126
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G TAL + FG+ A+ L+K N ++ G +P++ A + L+ +L++ GADV
Sbjct: 42 GKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAI 563
V + +H+A + +VSFL + ++ +D +G TPL A+
Sbjct: 101 NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELAL 147
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
+TAL + FG+ + LLK + N QD G +P+ + + L+ ++E GAD+
Sbjct: 43 KTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAAR-TGFLDTLKVLVEHGADV 100
Query: 452 KAKLMDGTTAL--HLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLL 509
DGT AL HLA G+ A+V++L D++ + G TP+ A++ ++ ++L
Sbjct: 101 NVP--DGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS--PLHLACATGNMDMITYAM 606
N+QD G +P+H A L+ L+ AD+ + P+HLA G+ ++++
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 607 KYFDVNIENDIGETPLHVAVSHGCLEAVKFL 637
D++ + G TPL +A+ G + V L
Sbjct: 128 AESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
A + G ++ V+ LL+ + + + + G TAL + +E LL+ A N+ D +
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTS 73
Query: 685 YT-PLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEE 743
T P++ A + LD +K+LV++GADVN+ + P+H A G + FL E
Sbjct: 74 GTSPVHDA-ARTGFLDTLKVLVEHGADVNVPDGTG--ALPIHLAVQEGH-TAVVSFLAAE 129
Query: 744 CNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
+D+ R+ T L A DL+ L
Sbjct: 130 --SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
+P+H A ++ +K+L+E GA+ + + +H+A +V L AE
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFL---AAESD 131
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKIL 346
++ ++ GLTPL +A +R ++V IL
Sbjct: 132 LHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 37.0 bits (84), Expect = 0.063, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 509 LLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQ 567
LLK GA V+ S + +H A ++ + L+ H VN+ D G P+H A+
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 568 LEVFNHLINSNADITMYKND----SPLHLACATGNMDMI 602
V + L A+ +++ D +PL LA G D++
Sbjct: 120 TAVVSFLA---AESDLHRRDARGLTPLELALQRGAQDLV 155
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N+++ G +P+H A G L+ +K L+ DVN G+ + A + +V
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVS-F 125
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKML 704
L A +D++ D TPL AL + D++ +L
Sbjct: 126 LAAESDLHRRDARGLTPLELALQRGAQ-DLVDIL 158
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + R G + V L+ AD + K+GST LH AA + L+++KLLL+ AD+ A+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 852 DKYGKIAFHSACQAKNWDIVTFL 874
DK+GK AF + N D+ L
Sbjct: 87 DKFGKTAFDISIDNGNEDLAEIL 109
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCT 362
D V++L GA+ + +N G TPLH+A R LE+VK+LL+ GAD+ + + G T
Sbjct: 38 DEVRILMANGADVAAKDKN--GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G+D+ KL++ A G V L+ + D+ +++ G TP++ A +N HLE+
Sbjct: 21 GSDLGKKLLEAARA-------GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVV 73
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
LLL+ GADV + K T ++ + + ++ L
Sbjct: 74 KLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DV ++ G TPLH+A +G LE VK LL DV + K G TA + + DL E
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAE 107
Query: 670 IL 671
IL
Sbjct: 108 IL 109
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 826 LHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKAT 885
L AA Q D +++L+ AD+ A+DK G H A + + ++V LL+AG+++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 886 KYRMT 890
K+ T
Sbjct: 88 KFGKT 92
Score = 37.4 bits (85), Expect = 0.042, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+D+G+ L A + G + V+ L+ DV K K+GST L A + L++V++LLEA
Sbjct: 22 SDLGKKLLEAARA-GQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Query: 675 NADVNLGD 682
ADV D
Sbjct: 80 GADVXAQD 87
Score = 36.2 bits (82), Expect = 0.095, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHMASQ 401
V+IL+ GAD+ + + +G TPL A LEV L+ G D+ + +TA ++
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 402 FGNLEMVNYL 411
GN ++ L
Sbjct: 100 NGNEDLAEIL 109
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA D ++ L+ GAD D ++PL + R G E+V LLE AD + K
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD-KF 89
Query: 822 GSTALHTAAFHNQLDIIKLL 841
G TA + + D+ ++L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A++ G + V L+ + ++ +DK+G TPL + + LEV ++EAGAD+ A+
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR-NGHLEVVKLLLEAGADVXAQDKF 89
Query: 458 GTTALHLACYFGN 470
G TA ++ GN
Sbjct: 90 GKTAFDISIDNGN 102
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K L A + + D ++L+ G + DK TPLH A N +E+VK
Sbjct: 26 KKLLEAARAGQDDEVRILMANGADVAAKDK-----------NGSTPLHLAARNGHLEVVK 74
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLL 311
LLLE GA+ A +K +TA ++ + D+ ++L
Sbjct: 75 LLLEAGADVXAQDKF-GKTAFDISIDNGNEDLAEIL 109
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL-SH 545
+DLGK + A E+ +L+ GADVA K K+ T LH+A +E+V LL +
Sbjct: 22 SDLGKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 546 IGVNLQDNKGCTPLHCAI 563
V QD G T +I
Sbjct: 81 ADVXAQDKFGKTAFDISI 98
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
R +D R L+ AD+ ++ N T L+ AA +L+++K LL+AGAD
Sbjct: 33 RAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
L +A D E V++L+ GA+ A +K+ T LH+AA +++VKLL + GA+ V
Sbjct: 29 LEAARAGQDDE-VRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGAD--VX 84
Query: 322 VQNVAGLTPLHIACRRKCLEIVKIL 346
Q+ G T I+ ++ +IL
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKML 704
+H D L A + D V IL+ ADV D TPL+ A ++ L+++K+L
Sbjct: 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLA-ARNGHLEVVKLL 76
Query: 705 VKYGADV 711
++ GADV
Sbjct: 77 LEAGADV 83
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 544 SHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMY-KNDS-PLHLACATGNMDM 601
SH+G +L G L A G EV L+ + AD+ KN S PLHLA G++++
Sbjct: 18 SHMGSDL----GKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEV 72
Query: 602 ITYAMKY-FDVNIENDIGETPLHVAVSHG 629
+ ++ DV ++ G+T +++ +G
Sbjct: 73 VKLLLEAGADVXAQDKFGKTAFDISIDNG 101
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Query: 262 LHSAILNSDIELVKLLLEKG-ANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSV 320
L A D++ V+ LL + +P A+ + +TAL V ++LL GA S
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMMFGSPAVALELL-KQGA--SP 69
Query: 321 NVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV 380
NVQ+ +G +P+H A R L+ +K+L++ GAD+N+ + G P+ AI + V ++L
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 381 NHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKHINI 417
DL + T L +A Q G +++ L H+ I
Sbjct: 130 PES-DLHHRDASGLTPLELARQRGAQNLMDILQGHMMI 166
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 36/148 (24%)
Query: 727 ASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDL 786
A+ RGD ++ R L E L F +TAL FG+ L+ LLK GA P++ D
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFG-KTALQVMMFGSPAVALE-LLKQGASPNVQDA 74
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
TSP+ + R G LD +K+L+++ A
Sbjct: 75 SGTSPVHDAARTGF----------------------------------LDTLKVLVEHGA 100
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFL 874
D+NA D G + H A + + +V+FL
Sbjct: 101 DVNALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
+TAL + FG+ + LLK + N QD G +P+ + + L+ ++E GAD+
Sbjct: 45 KTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAAR-TGFLDTLKVLVEHGADV 102
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLL 509
A G+ +HLA G+ ++V++L D++ + G TP+ A + + ++L
Sbjct: 103 NALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G TAL + FG+ A+ L+K N ++ G +P++ A + L+ +L++ GADV
Sbjct: 44 GKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 102
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCA 562
+ +H+A +VSFL ++ +D G TPL A
Sbjct: 103 NALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGLTPLELA 148
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS--PLHLACATGNMDMITYAM 606
N+QD G +P+H A L+ L+ AD+ + P+HLA G+ ++++
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 607 KYFDVNIENDIGETPLHVAVSHG 629
D++ + G TPL +A G
Sbjct: 130 PESDLHHRDASGLTPLELARQRG 152
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
A + G ++ V+ LL+ + + + + G TAL + +E LL+ A N+ D +
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDAS 75
Query: 685 YT-PLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEE 743
T P++ A + LD +K+LV++GADVN + P+H A G + + FL E
Sbjct: 76 GTSPVHDA-ARTGFLDTLKVLVEHGADVNALDSTG--SLPIHLAIREGH-SSVVSFLAPE 131
Query: 744 CNADITLRNFNNRTALNFA---AFGNNLDLLK 772
+D+ R+ + T L A N +D+L+
Sbjct: 132 --SDLHHRDASGLTPLELARQRGAQNLMDILQ 161
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 237 GVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTAL 296
V L L+ +G N +P+H A ++ +K+L+E GA+ A++ S +
Sbjct: 57 AVALELLKQGASPNVQD--ASGTSPVHDAARTGFLDTLKVLVEHGADVNALD-STGSLPI 113
Query: 297 HVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKIL 346
H+A +V L E ++ ++ +GLTPL +A +R ++ IL
Sbjct: 114 HLAIREGHSSVVSFL---APESDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Query: 262 LHSAILNSDIELVKLLLEKG-ANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSV 320
L A D++ V+ LL + +P A+ + +TAL V ++LL GA S
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMMFGSPAVALELL-KQGA--SP 67
Query: 321 NVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV 380
NVQ+ +G +P+H A R L+ +K+L++ GAD+N+ + G P+ AI + V ++L
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 381 NHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKHINI 417
DL + T L +A Q G +++ L H+ I
Sbjct: 128 PES-DLHHRDASGLTPLELARQRGAQNLMDILQGHMMI 164
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 36/148 (24%)
Query: 727 ASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDL 786
A+ RGD ++ R L E L F +TAL FG+ L+ LLK GA P++ D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFG-KTALQVMMFGSPAVALE-LLKQGASPNVQDA 72
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
TSP+ + R G LD +K+L+++ A
Sbjct: 73 SGTSPVHDAARTGF----------------------------------LDTLKVLVEHGA 98
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFL 874
D+NA D G + H A + + +V+FL
Sbjct: 99 DVNALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
+TAL + FG+ + LLK + N QD G +P+ + + L+ ++E GAD+
Sbjct: 43 KTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAAR-TGFLDTLKVLVEHGADV 100
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLL 509
A G+ +HLA G+ ++V++L D++ + G TP+ A + + ++L
Sbjct: 101 NALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
G TAL + FG+ A+ L+K N ++ G +P++ A + L+ +L++ GADV
Sbjct: 42 GKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCA 562
+ +H+A +VSFL ++ +D G TPL A
Sbjct: 101 NALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGLTPLELA 146
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS--PLHLACATGNMDMITYAM 606
N+QD G +P+H A L+ L+ AD+ + P+HLA G+ ++++
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 607 KYFDVNIENDIGETPLHVAVSHG 629
D++ + G TPL +A G
Sbjct: 128 PESDLHHRDASGLTPLELARQRG 150
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
A + G ++ V+ LL+ + + + + G TAL + +E LL+ A N+ D +
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDAS 73
Query: 685 YT-PLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEE 743
T P++ A + LD +K+LV++GADVN + P+H A G + + FL E
Sbjct: 74 GTSPVHDA-ARTGFLDTLKVLVEHGADVNALDSTG--SLPIHLAIREGH-SSVVSFLAPE 129
Query: 744 CNADITLRNFNNRTALNFA---AFGNNLDLLK 772
+D+ R+ + T L A N +D+L+
Sbjct: 130 --SDLHHRDASGLTPLELARQRGAQNLMDILQ 159
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 237 GVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTAL 296
V L L+ +G N +P+H A ++ +K+L+E GA+ A++ S +
Sbjct: 55 AVALELLKQGASPNVQD--ASGTSPVHDAARTGFLDTLKVLVEHGADVNALD-STGSLPI 111
Query: 297 HVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKIL 346
H+A +V L E ++ ++ +GLTPL +A +R ++ IL
Sbjct: 112 HLAIREGHSSVVSFL---APESDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 122/264 (46%), Gaps = 33/264 (12%)
Query: 179 QSSDSNSDKALEEELTN-------IFKKFDLLEHPEYLSHSQGYKALCWALQEK-----K 226
Q S SN+++ + EL+ +K+ L++P L+ + A LQE +
Sbjct: 20 QGSGSNTEEEIRMELSPDLISACLALEKY--LDNPNALTERELKVAYTTVLQEWLRLACR 77
Query: 227 TDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETD--TPLHSAILNSDIELVKLLLEKGANP 284
+D LV + + L+Y I +++ T LH ++ +++ +V+ LL+ G
Sbjct: 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK 137
Query: 285 LAIEKSRNR--------TALHVAAIVESVDIVKLLFDYGAEKSVNVQ-NVAGLTPLHIAC 335
+ +NR TAL + ++ V LF G ++N + + AG T L +A
Sbjct: 138 V---DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG---NINAKASQAGQTALMLAV 191
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN-HGCDLSVPEGE-R 393
+++VK LL AD+N +DDG T L CA E+ L+ CD+S+ + +
Sbjct: 192 SHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGS 251
Query: 394 TALHMASQFGNLEMVNYLLKHINI 417
TAL +A G E+ + L +NI
Sbjct: 252 TALMVALDAGQSEIASMLYSRMNI 275
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 748 ITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA-DPDILDLKDTSPLLSSCRQGL--YEIV 804
+ + + N TAL+++ N +++ LL +G D + SP++ + L + +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 805 DTLLEYN--ADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
+T+L+ + N + + G TAL A H ++D++K LL AD+N +D G A A
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
Query: 863 CQAKNWDIVTFLL 875
C+ + +I LL
Sbjct: 224 CEHGHKEIAGLLL 236
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 311 LFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA-DINSGNDDGCTP-LFCAI 368
L DY VN+ + G T LH + +V+ LLD G ++ N G +P + A+
Sbjct: 99 LLDY----VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154
Query: 369 A----QNCLEVFNYLVNHG-CDLSVPEGERTALHMASQFGNLEMVNYLLK-HININHQDK 422
A Q+ +E L G + + +TAL +A G +++V LL ++N QD
Sbjct: 155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD 214
Query: 423 DGWTPLTCSIKGQASLEVFHSIIEA-GADIKAKLMDGTTALHLACYFGNLAMVNYLVKHI 481
DG T L C+ + E+ ++ DI DG+TAL +A G + + L +
Sbjct: 215 DGSTALMCACE-HGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273
Query: 482 DI 483
+I
Sbjct: 274 NI 275
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 525 TCLHVACEFASIEMVSFLLSH--IGVNLQDNKGCTPLHCAIVGN---------QLEVFNH 573
T LH + A+ +V LL V+ Q+ G +P+ + L++F
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF-R 171
Query: 574 LINSNADITMYKNDSPLHLACATGNMDMITYAMK-YFDVNIENDIGETPLHVAVSHGCLE 632
L N NA + + L LA + G +D++ + DVN+++D G T L A HG E
Sbjct: 172 LGNINAKASQ-AGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE 230
Query: 633 AVKFLLNTKNIDVNHKTKDGSTALFFA 659
LL + D++ +DGSTAL A
Sbjct: 231 IAGLLLAVPSCDISLTDRDGSTALMVA 257
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 40/189 (21%)
Query: 394 TALHMASQFGNLEMVNYLLKH--ININHQDKDGWTPLT----CSIKGQASLEVFHSIIEA 447
TALH + N +V LL ++ Q++ G++P+ ++K Q +E +
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFN 507
G +I AK + G+T + A+ + +++
Sbjct: 173 G-NINAK-------------------------------ASQAGQTALMLAVSHGRVDVVK 200
Query: 508 LLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLS--HIGVNLQDNKGCTPLHCAIVG 565
LL ADV V+ T L ACE E+ LL+ ++L D G T L A+
Sbjct: 201 ALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDA 260
Query: 566 NQLEVFNHL 574
Q E+ + L
Sbjct: 261 GQSEIASML 269
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 41/123 (33%)
Query: 609 FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNH-----------------KTKD 651
+ VNI + G T LH +VSH V+ LL++ V+ KT+D
Sbjct: 102 YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQD 161
Query: 652 ---------------------GSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYT 690
G TAL A R+D+V+ LL ADVN+ D + T
Sbjct: 162 DIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGS---T 218
Query: 691 ALM 693
ALM
Sbjct: 219 ALM 221
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 756 RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTN 815
RTAL GN ++ + LL GA+PD+ D + + + R G + + TLLE+ AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 816 LRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+ G+ LH AA L +++ L+K+ A
Sbjct: 98 IED-NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 555 GCTPLHCAIVGNQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDV 611
G T L +GN E+ L+ +N D+ ++ +H A G +D + +++ DV
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
NIE++ G PLH+A G L V+FL+ +V H+ G TA A R ++V L
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-L 155
Query: 672 LEANA 676
++AN
Sbjct: 156 MQANG 160
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 802 EIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
EI LL A+ +L+ + G+ +H AA LD ++ LL++ AD+N ED G + H
Sbjct: 51 EIARRLLLRGANPDLKD-RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109
Query: 862 ACQAKNWDIVTFLLD-AGSNI 881
A + + +V FL+ SN+
Sbjct: 110 AAKEGHLRVVEFLVKHTASNV 130
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 393 RTALHMASQFGNLEMVN-YLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RTAL + + GN E+ LL+ N + +D+ G + + + L+ +++E AD+
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARA-GFLDTLQTLLEFQADV 96
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHI--DINSENDLGKTPIYFAIKNNHLEIFNLL 509
+ +G LHLA G+L +V +LVKH ++ N G T A E+ +L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 510 LKLGADVAVKMK 521
GA A ++
Sbjct: 157 QANGAGGATNLQ 168
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
RTAL V + + +I + L GA ++++ G +H A R L+ ++ LL+ AD
Sbjct: 39 RTALQVMKL-GNPEIARRLLLRGANP--DLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER-----TALHMASQFGNLEM 407
+N +++G PL A + L V +LV H + G R TA +A +G E+
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH---TASNVGHRNHKGDTACDLARLYGRNEV 152
Query: 408 VNYL 411
V+ +
Sbjct: 153 VSLM 156
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G T L V A + LL N D+ +T G+ + A LD ++ LLE AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRT--GNAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 678 VNLGDGTYT-PLYTALMKDPSLDIIKMLVKYGA 709
VN+ D PL+ A K+ L +++ LVK+ A
Sbjct: 96 VNIEDNEGNLPLHLA-AKEGHLRVVEFLVKHTA 127
Score = 33.1 bits (74), Expect = 0.75, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 425 WTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVN-YLVKHIDI 483
W S + LE S+++ ++ A+ G TAL + GN + L++ +
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANP 63
Query: 484 NSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL 543
+ ++ G I+ A + L+ LL+ ADV ++ LH+A + + +V FL+
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 544 SHIGVNL--QDNKGCTPLHCAIVGNQLEVFNHLINSNA 579
H N+ +++KG T A + + EV + L+ +N
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQANG 160
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 756 RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTN 815
RTAL GN ++ + LL GA+PD+ D + + + R G + + TLLE+ AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 816 LRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+ G+ LH AA L +++ L+K+ A
Sbjct: 98 IED-NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 555 GCTPLHCAIVGNQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDV 611
G T L +GN E+ L+ +N D+ + +H A G +D + +++ DV
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
NIE++ G PLH+A G L V+FL+ +V H+ G TA A R ++V L
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-L 155
Query: 672 LEANA 676
++AN
Sbjct: 156 MQANG 160
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 802 EIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
EI LL A+ +L+ + G +H AA LD ++ LL++ AD+N ED G + H
Sbjct: 51 EIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109
Query: 862 ACQAKNWDIVTFLLD-AGSNI 881
A + + +V FL+ SN+
Sbjct: 110 AAKEGHLRVVEFLVKHTASNV 130
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 393 RTALHMASQFGNLEMVN-YLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RTAL + + GN E+ LL+ N + +D+ G+ + + + L+ +++E AD+
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADV 96
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHI--DINSENDLGKTPIYFAIKNNHLEIFNLL 509
+ +G LHLA G+L +V +LVKH ++ N G T A E+ +L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 510 LKLGA 514
GA
Sbjct: 157 QANGA 161
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
RTAL V + + +I + L GA ++++ G +H A R L+ ++ LL+ AD
Sbjct: 39 RTALQVMKL-GNPEIARRLLLRGANP--DLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER-----TALHMASQFGNLEM 407
+N +++G PL A + L V +LV H + G R TA +A +G E+
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH---TASNVGHRNHKGDTACDLARLYGRNEV 152
Query: 408 VNYL 411
V+ +
Sbjct: 153 VSLM 156
Score = 32.7 bits (73), Expect = 0.94, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G T L V A + LL N D+ +T G + A LD ++ LLE AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 678 VNLGDGTYT-PLYTALMKDPSLDIIKMLVKYGA 709
VN+ D PL+ A K+ L +++ LVK+ A
Sbjct: 96 VNIEDNEGNLPLHLA-AKEGHLRVVEFLVKHTA 127
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 425 WTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVN-YLVKHIDI 483
W S + LE S+++ ++ A+ G TAL + GN + L++ +
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANP 63
Query: 484 NSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL 543
+ ++ G I+ A + L+ LL+ ADV ++ LH+A + + +V FL+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 544 SHIGVNL--QDNKGCTPLHCAIVGNQLEVFNHLINSNA 579
H N+ +++KG T A + + EV + L+ +N
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQANG 160
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 756 RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTN 815
RTAL GN ++ + LL GA+PD+ D + + + R G + + TLLE+ AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 816 LRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+ G+ LH AA L +++ L+K+ A
Sbjct: 98 IED-NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 555 GCTPLHCAIVGNQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDV 611
G T L +GN E+ L+ +N D+ + +H A G +D + +++ DV
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
NIE++ G PLH+A G L V+FL+ +V H+ G TA A R ++V L
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-L 155
Query: 672 LEANA 676
++AN
Sbjct: 156 MQANG 160
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 393 RTALHMASQFGNLEMVN-YLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RTAL + + GN E+ LL+ N + +D+ G+ + + + L+ +++E AD+
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADV 96
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHI--DINSENDLGKTPIYFAIKNNHLEIFNLL 509
+ +G LHLA G+L +V +LVKH ++ N G T A E+ +L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 510 LKLGADVAVKMK 521
GA A ++
Sbjct: 157 QANGAGGATNLQ 168
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 802 EIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
EI LL A+ +L+ + G +H AA LD ++ LL++ AD+N ED G + H
Sbjct: 51 EIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109
Query: 862 ACQAKNWDIVTFLLD-AGSNI 881
A + + +V FL+ SN+
Sbjct: 110 AAKEGHLRVVEFLVKHTASNV 130
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
RTAL V + + +I + L GA ++++ G +H A R L+ ++ LL+ AD
Sbjct: 39 RTALQVMKL-GNPEIARRLLLRGANP--DLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER-----TALHMASQFGNLEM 407
+N +++G PL A + L V +LV H + G R TA +A +G E+
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH---TASNVGHRNHKGDTACDLARLYGRNEV 152
Query: 408 VNYL 411
V+ +
Sbjct: 153 VSLM 156
Score = 33.1 bits (74), Expect = 0.91, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G T L V A + LL N D+ +T G + A LD ++ LLE AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 678 VNLGDGTYT-PLYTALMKDPSLDIIKMLVKYGA 709
VN+ D PL+ A K+ L +++ LVK+ A
Sbjct: 96 VNIEDNEGNLPLHLA-AKEGHLRVVEFLVKHTA 127
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 425 WTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVN-YLVKHIDI 483
W S + LE S+++ ++ A+ G TAL + GN + L++ +
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANP 63
Query: 484 NSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL 543
+ ++ G I+ A + L+ LL+ ADV ++ LH+A + + +V FL+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 544 SHIGVNL--QDNKGCTPLHCAIVGNQLEVFNHLINSNA 579
H N+ +++KG T A + + EV + L+ +N
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQANG 160
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 26/181 (14%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGAN----PLAIEKSRNRTALHVAAIVESVDIVKLLFDY 314
+T LH A L ++E +L+E P+ E +TALH+A I ++V++V+ L
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Query: 315 GAEKSVNVQNVA-----------GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTP 363
GA S G PL A EIV++L++ GADI + + G T
Sbjct: 98 GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157
Query: 364 LFCAIAQN----CLEVFNYLVNH--GCDLS----VPEGER-TALHMASQFGNLEMVNYLL 412
L I Q +++N L+++ G L VP + T +A GN+ M +L+
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Query: 413 K 413
+
Sbjct: 218 Q 218
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 27/186 (14%)
Query: 221 ALQEKKTDIAKLLVDKGVPLNLVDKGVPLNY---SRRIIETDTPLHSAILNSDIELVKLL 277
A+ E IA L + + L++ L + + + E T LH A++N ++ LV+ L
Sbjct: 35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94
Query: 278 LEKGANPLAIEKSR------------NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNV 325
L +GA+ A L AA V S +IV+LL ++GA+ + Q+
Sbjct: 95 LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD--IRAQDS 152
Query: 326 AGLTPLHIACRRK----CLEIVKILL--DKGADINS----GNDDGCTPLFCAIAQNCLEV 375
G T LHI + ++ +LL D G + S N+ G TP A + + +
Sbjct: 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212
Query: 376 FNYLVN 381
F +L+
Sbjct: 213 FQHLMQ 218
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 59/244 (24%)
Query: 362 TPLFCAIAQNCLEVFNYLVN-HGCDLSV--PEGERTALHMASQFGNLEMVNYLLKHININ 418
+PL A +N ++ + L+ GC++ GE TALH+A+ + NLE L++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEA---- 59
Query: 419 HQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYL- 477
+ + P+T ++L +G TALH+A N+ +V L
Sbjct: 60 -APELVFEPMT-----------------------SELYEGQTALHIAVINQNVNLVRALL 95
Query: 478 -------------VKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNF 524
V H ++ G+ P+ FA EI LL++ GAD+ +
Sbjct: 96 ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN 155
Query: 525 TCLHVAC-----EFASIEMVSFLLSHIGVN-------LQDNKGCTPLHCAIVGNQLEVFN 572
T LH+ FA +M + LLS+ G + + +N+G TP A V + +F
Sbjct: 156 TVLHILILQPNKTFAC-QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214
Query: 573 HLIN 576
HL+
Sbjct: 215 HLMQ 218
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAE- 317
++PL A +D++ + LL+ + + TALH+AA+ ++++ +L + E
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 318 --KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDD-------------GCT 362
+ + + G T LHIA + + +V+ LL +GA +++ G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 363 PLFCAIAQNCLEVFNYLVNHGCDLSVPEG-ERTALHM 398
PL A E+ L+ HG D+ + T LH+
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 23/146 (15%)
Query: 587 DSPLHLACATGNMDMITYAMKY--FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNID 644
+SPL LA ++ ++ +K+ +V+ +GET LH+A + LEA L+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 645 V----NHKTKDGSTALFFACYDKRLDLVEILLEANADVNL-GDGT---YTP---LYTALM 693
V + +G TAL A ++ ++LV LL A V+ G+ Y P +Y
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG-- 121
Query: 694 KDP--------SLDIIKMLVKYGADV 711
+ P S +I+++L+++GAD+
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADI 147
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 720 YMTPLHYASYRGDCNDIARFL-VEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAG 778
+ +PL A+ D +++ L E C ++ R TAL+ AA +NL+ L++A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGC--EVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 779 ADPDILDLKDTSPL--------LSSCRQGLYEIVDTLLEYNADTNLRT------------ 818
P+++ TS L ++ Q + +V LL A + R
Sbjct: 61 --PELVFEPMTSELYEGQTALHIAVINQNV-NLVRALLARGASVSARATGSVFHYRPHNL 117
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFH 860
I +G L AA +I++LL+++ ADI A+D G H
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 22/163 (13%)
Query: 617 IGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANA 676
I E+PL +A ++A+ LL + +V+ + G TAL A L+ +L+EA
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 677 DV-------NLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVN--LTNEACYYMT----- 722
++ L +G T L+ A++ + ++++++ L+ GA V+ T +Y
Sbjct: 62 ELVFEPMTSELYEGQ-TALHIAVI-NQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119
Query: 723 ----PLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNF 761
PL +A+ G +I R L+E ADI ++ T L+
Sbjct: 120 YGEHPLSFAACVGS-EEIVRLLIEH-GADIRAQDSLGNTVLHI 160
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 756 RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTN 815
RTAL GN ++ + LL GA+PD+ D + + + R G + + TLLE+ AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN 97
Query: 816 LRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+ G+ LH AA L +++ L+K+ A
Sbjct: 98 IED-NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 555 GCTPLHCAIVGNQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDV 611
G T L +GN E+ L+ +N D+ + +H A G +D + +++ DV
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
NIE++ G PLH+A G L V+FL+ +V H+ G TA A R ++V L
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-L 155
Query: 672 LEANA 676
++AN
Sbjct: 156 MQANG 160
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 802 EIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
EI LL A+ +L+ + G +H AA QLD ++ LL++ AD+N ED G + H
Sbjct: 51 EIARRLLLRGANPDLKD-RTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHL 109
Query: 862 ACQAKNWDIVTFLLD-AGSNI 881
A + + +V FL+ SN+
Sbjct: 110 AAKEGHLRVVEFLVKHTASNV 130
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 393 RTALHMASQFGNLEMVN-YLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RTAL + + GN E+ LL+ N + +D+ G+ + + + L+ +++E AD+
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GQLDTLQTLLEFQADV 96
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHI--DINSENDLGKTPIYFAIKNNHLEIFNLL 509
+ +G LHLA G+L +V +LVKH ++ N G T A E+ +L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 510 LKLGADVAVKMK 521
GA A ++
Sbjct: 157 QANGAGGATNLQ 168
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
RTAL V + + +I + L GA ++++ G +H A R L+ ++ LL+ AD
Sbjct: 39 RTALQVMKL-GNPEIARRLLLRGANP--DLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER-----TALHMASQFGNLEM 407
+N +++G PL A + L V +LV H + G R TA +A +G E+
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH---TASNVGHRNHKGDTACDLARLYGRNEV 152
Query: 408 VNYL 411
V+ +
Sbjct: 153 VSLM 156
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G T L V A + LL N D+ +T G + A +LD ++ LLE AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 678 VNLGDGTYT-PLYTALMKDPSLDIIKMLVKYGA 709
VN+ D PL+ A K+ L +++ LVK+ A
Sbjct: 96 VNIEDNEGNLPLHLA-AKEGHLRVVEFLVKHTA 127
Score = 32.7 bits (73), Expect = 0.94, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 425 WTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVN-YLVKHIDI 483
W S + LE S+++ ++ A+ G TAL + GN + L++ +
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANP 63
Query: 484 NSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL 543
+ ++ G I+ A + L+ LL+ ADV ++ LH+A + + +V FL+
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 544 SHIGVNL--QDNKGCTPLHCAIVGNQLEVFNHLINSNA 579
H N+ +++KG T A + + EV + L+ +N
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQANG 160
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 756 RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTN 815
RTAL GN ++ + LL GA+PD+ D + + + R G + + TLLE AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN 97
Query: 816 LRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+ G+ LH AA L +++ L+K+ A
Sbjct: 98 IED-NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 555 GCTPLHCAIVGNQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMI-TYAMKYFDV 611
G T L +GN E+ L+ +N D+ + +H A G +D + T DV
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
NIE++ G PLH+A G L V+FL+ +V H+ G TA A R ++V L
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-L 155
Query: 672 LEANA 676
++AN
Sbjct: 156 MQANG 160
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 393 RTALHMASQFGNLEMVN-YLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
RTAL + + GN E+ LL+ N + +D+ G+ + + + L+ +++E AD+
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLENQADV 96
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKHI--DINSENDLGKTPIYFAIKNNHLEIFNLL 509
+ +G LHLA G+L +V +LVKH ++ N G T A E+ +L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 510 LKLGADVAVKMK 521
GA A ++
Sbjct: 157 QANGAGGATNLQ 168
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
RTAL V + + +I + L GA ++++ G +H A R L+ ++ LL+ AD
Sbjct: 39 RTALQVMKL-GNPEIARRLLLRGANP--DLKDRTGFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER-----TALHMASQFGNLEM 407
+N +++G PL A + L V +LV H + G R TA +A +G E+
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH---TASNVGHRNHKGDTACDLARLYGRNEV 152
Query: 408 VNYL 411
V+ +
Sbjct: 153 VSLM 156
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 802 EIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
EI LL A+ +L+ + G +H AA LD ++ LL+ AD+N ED G + H
Sbjct: 51 EIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHL 109
Query: 862 ACQAKNWDIVTFLLD-AGSNI 881
A + + +V FL+ SN+
Sbjct: 110 AAKEGHLRVVEFLVKHTASNV 130
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G T L V A + LL N D+ +T G + A LD ++ LLE AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 678 VNLGDGTYT-PLYTALMKDPSLDIIKMLVKYGA 709
VN+ D PL+ A K+ L +++ LVK+ A
Sbjct: 96 VNIEDNEGNLPLHLA-AKEGHLRVVEFLVKHTA 127
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 425 WTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVN-YLVKHIDI 483
W S + LE S+++ ++ A+ G TAL + GN + L++ +
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANP 63
Query: 484 NSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLL 543
+ ++ G I+ A + L+ LL+ ADV ++ LH+A + + +V FL+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 544 SHIGVNL--QDNKGCTPLHCAIVGNQLEVFNHLINSNA 579
H N+ +++KG T A + + EV + L+ +N
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQANG 160
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL S +G +++V ++ Y D G TALH A +I+K L+++ ++NA
Sbjct: 41 LLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMTFESSKVVE 898
D G H A N + FL+++G+ + T M + K E
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 321 NVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV 380
++ N G+T LH A EIVK L+ G ++N+ + DG TPL CA + N ++V +LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 381 NHG 383
G
Sbjct: 124 ESG 126
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 385 DLSVPEGER-TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFH 442
D S+P E TALH A G+ E+V +L++ +N+N D DGWTPL C+ +++V
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN-NVQVCK 120
Query: 443 SIIEAGADIKA 453
++E+GA + A
Sbjct: 121 FLVESGAAVFA 131
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 267 LNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVA 326
L + +LV+ ++ + +P ++ TALH A +IVK L +G +VN +
Sbjct: 46 LEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGV--NVNAADSD 102
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADI 353
G TPLH A +++ K L++ GA +
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 515 DVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNH 573
D ++ T LH A E+V FL+ + VN D+ G TPLHCA N ++V
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 574 LINSNADI 581
L+ S A +
Sbjct: 122 LVESGAAV 129
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 386 LSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLE----VF 441
+S+P G+RT L I H + + PL ++ +SLE +
Sbjct: 7 VSLPPGKRTNLRKTGSE-------------RIAHGMRVKFNPLPLALLLDSSLEGEFDLV 53
Query: 442 HSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKN 500
II D +G TALH A G+ +V +LV+ +++N+ + G TP++ A
Sbjct: 54 QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC 113
Query: 501 NHLEIFNLLLKLGADVAVKMKSNFTCLHVACE 532
N++++ L++ GA V S+ CE
Sbjct: 114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 186 DKALEEELTNIFKKFDLLEHPEYLSHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDK 245
D +LE E + + ++ P L + +G AL A+ T+I K LV GV +N D
Sbjct: 43 DSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS 101
Query: 246 GVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESV 305
+ TPLH A +++++ K L+E GA A+ S +TA +E
Sbjct: 102 -----------DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150
Query: 306 DIVKLLFDYGAEKSVNVQN 324
F YG ++ + + N
Sbjct: 151 YTQCSQFLYGVQEKMGIMN 169
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
D ++ ND G T LH AV G E VKFL+ ++VN DG T L A + + +
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 670 ILLEANADVNLGDGTYTPLYTA 691
L+E+ A V TY+ + TA
Sbjct: 121 FLVESGAAVFA--MTYSDMQTA 140
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 685 YTPLYTALMKDPSL----DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFL 740
+ PL AL+ D SL D+++ ++ D +L N+ +T LH A G +I +FL
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG--ITALHNAVCAGH-TEIVKFL 89
Query: 741 VEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQ 798
V+ ++ + + T L+ AA NN+ + KFL+++GA + D C +
Sbjct: 90 VQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 469 GNLAMVNYLVKHIDINS-ENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCL 527
G +V ++ +D S ND G T ++ A+ H EI L++ G +V +T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 528 HVACEFASIEMVSFLL 543
H A ++++ FL+
Sbjct: 108 HCAASCNNVQVCKFLV 123
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMI---- 602
+L +++G T LH A+ E+ L+ ++ +D +PLH A + N+ +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 603 -----TYAMKYFDVNIEND 616
+AM Y D+ D
Sbjct: 124 ESGAAVFAMTYSDMQTAAD 142
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL S +G +++V ++ Y D G TALH A +I+K L+++ ++NA
Sbjct: 41 LLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMTFESSKVVE 898
D G H A N + FL+++G+ + T M + K E
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 321 NVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV 380
++ N G+T LH A EIVK L+ G ++N+ + DG TPL CA + N ++V +LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 381 NHG 383
G
Sbjct: 124 ESG 126
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 385 DLSVPEGER-TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFH 442
D S+P E TALH A G+ E+V +L++ +N+N D DGWTPL C+ +++V
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN-NVQVCK 120
Query: 443 SIIEAGADIKA 453
++E+GA + A
Sbjct: 121 FLVESGAAVFA 131
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 267 LNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVA 326
L + +LV+ ++ + +P ++ TALH A +IVK L +G +VN +
Sbjct: 46 LEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGV--NVNAADSD 102
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADI 353
G TPLH A +++ K L++ GA +
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 515 DVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNH 573
D ++ T LH A E+V FL+ + VN D+ G TPLHCA N ++V
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 574 LINSNADI 581
L+ S A +
Sbjct: 122 LVESGAAV 129
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 186 DKALEEELTNIFKKFDLLEHPEYLSHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDK 245
D +LE E + + ++ P L + +G AL A+ T+I K LV GV +N D
Sbjct: 43 DSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS 101
Query: 246 GVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESV 305
+ TPLH A +++++ K L+E GA A+ S +TA +E
Sbjct: 102 -----------DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150
Query: 306 DIVKLLFDYGAEKSVNVQN 324
F YG ++ + + N
Sbjct: 151 YTQCSQFLYGVQEKMGIMN 169
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+G TALH A G+ +V +LV+ +++N+ + G TP++ A N++++ L++ GA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 516 VAVKMKSNFTCLHVACE 532
V S+ CE
Sbjct: 129 VFAMTYSDMQTAADKCE 145
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
D ++ ND G T LH AV G E VKFL+ ++VN DG T L A + + +
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 670 ILLEANADVNLGDGTYTPLYTA 691
L+E+ A V TY+ + TA
Sbjct: 121 FLVESGAAVFA--MTYSDMQTA 140
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 469 GNLAMVNYLVKHIDINS-ENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCL 527
G +V ++ +D S ND G T ++ A+ H EI L++ G +V +T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 528 HVACEFASIEMVSFLL 543
H A ++++ FL+
Sbjct: 108 HCAASCNNVQVCKFLV 123
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 685 YTPLYTALMKDPSL----DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFL 740
+ PL AL+ D SL D+++ ++ D +L N+ +T LH A G +I +FL
Sbjct: 35 FNPL--ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG--ITALHNAVCAGH-TEIVKFL 89
Query: 741 VEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQ 798
V+ ++ + + T L+ AA NN+ + KFL+++GA + D C +
Sbjct: 90 VQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 753 FNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNA 812
FN L ++ DL++ ++ DP + + + + L ++ G EIV L+++
Sbjct: 35 FNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 813 DTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINA 850
+ N G T LH AA N + + K L++ A + A
Sbjct: 95 NVNAAD-SDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDM----- 601
+L +++G T LH A+ E+ L+ ++ +D +PLH A + N+ +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 602 ----ITYAMKYFDVNIEND 616
+AM Y D+ D
Sbjct: 124 ESGAAVFAMTYSDMQTAAD 142
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 587 DSPLHLACATGNMDMITYAM-KYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDV 645
D+PLH A GN+ + + VN + G T L+ A G + V+ L NI++
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANADVNL 680
N + K G TAL A + D+V++LL A +L
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 247 VPLNYSRRIIET-DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESV 305
+P NY E+ D PLH A ++ ++ L+ ++K+ TAL+ A
Sbjct: 61 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHK 119
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
DIV+ LF +N QN G T LH A + +IV++LL KGA
Sbjct: 120 DIVEXLFTQ-PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLL-EYNADTNLR 817
L+ AA NL L+ L + LD ++ L +C G +IV+ L + N + N +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 818 TIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQA 865
K G TALH AA+ DI++LLL A + + K+AF A A
Sbjct: 137 N-KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNA 183
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 458 GTTALHLACYFGNLAMVNYLVKH--IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA 514
G+TAL+ AC+ G+ +V L I++N +N LG T ++ A + +I LLL GA
Sbjct: 106 GSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 820 KHGSTALHTAAFHNQLDIIK-LLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
K GSTAL+ A DI++ L + N ++N ++K G A H+A DIV LL G
Sbjct: 104 KAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Query: 879 S-----NIEK 883
+ NIEK
Sbjct: 164 ARTDLRNIEK 173
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 462 LHLACYFGNLAMVNY-LVKHIDINSENDLGKTPIYFAIKNNHLEIFN-LLLKLGADVAVK 519
LH A GNL+ + L + +N + G T +Y+A H +I L + ++ +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 520 MKSNFTCLHVACEFASIEMVSFLLS 544
K T LH A ++V LL+
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLA 161
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 826 LHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLL 875
LH AA L ++ L +N DK G A + AC + DIV L
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF 126
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 105/269 (39%), Gaps = 27/269 (10%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
N +HVAA D V+ L + G S +QN G T LH+AC+ C++ K L G
Sbjct: 20 NXEKIHVAARKGQTDEVRRLIETGV--SPTIQNRFGCTALHLACKFGCVDTAKYLASVG- 76
Query: 352 DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGN---LEMV 408
+++S G P+ A+ N ++ LV EG + N V
Sbjct: 77 EVHSLW-HGQKPIHLAVXANKTDLVVALV---------EGAKERGQXPESLLNECDEREV 126
Query: 409 NYLLKHI-NINHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACY 467
N + H+ + Q W C G LE +++ GA AK T L A
Sbjct: 127 NEIGSHVKHCKGQTALHW----CVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXE 182
Query: 468 FGNLAMVNYLVKHIDINSE------NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMK 521
F N ++ + S N G + +++AI N ++ ++ G DV +
Sbjct: 183 FRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDN 242
Query: 522 SNFTCLHVACEFASIEMVSFLLSHIGVNL 550
+ L+++ A + + LL V L
Sbjct: 243 EHTVPLYLSVRAAXVLLTKELLQKTDVFL 271
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 101/258 (39%), Gaps = 35/258 (13%)
Query: 494 IYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDN 553
I+ A + + L++ G ++ + T LH+AC+F ++ +L S +G
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHSLW 82
Query: 554 KGCTPLHCAIVGNQLEVFNHLINS-----------------------NADITMYKNDSPL 590
G P+H A+ N+ ++ L+ + + K + L
Sbjct: 83 HGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTAL 142
Query: 591 HLACATGN--MDMITYAMKYFDVNIENDIG-ETPLHVAVSHGCLEAVKFLLNT----KNI 643
H G ++ I ++ D ETPL A EA+ +T ++
Sbjct: 143 HWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSL 202
Query: 644 DVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYT-PLYTALMKDPSLDIIK 702
+++ K G++ L +A D+ +E DVN D +T PLY ++ L +
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKE 262
Query: 703 MLVKYGADVNLTNEACYY 720
+L K DV L +AC Y
Sbjct: 263 LLQK--TDVFLI-QACPY 277
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 104/289 (35%), Gaps = 61/289 (21%)
Query: 585 KNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNI 643
+N +H+A G D + ++ I+N G T LH+A GC++ K+L + +
Sbjct: 19 ENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV 78
Query: 644 DVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKM 703
H G + A + DLV L+E + G + ++ I
Sbjct: 79 ---HSLWHGQKPIHLAVXANKTDLVVALVEGAKE----RGQXPESLLNECDEREVNEIGS 131
Query: 704 LVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAA 763
VK+ C T LH+ G
Sbjct: 132 HVKH----------CKGQTALHWCVGLGP------------------------------- 150
Query: 764 FGNNLDLLKFLLKAGADPDILDLKDTSPLLSSC----RQGLYEIVDTLLEYNADTNLR-- 817
L+ +K L++ GA P D D +PL + R+ L DT+ + ++LR
Sbjct: 151 --EYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTV---PSKSSLRLD 205
Query: 818 -TIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQA 865
K G++ LH A N D+ ++ D+N ED + + + +A
Sbjct: 206 YANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRA 254
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 271 IELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS---VNVQNVAG 327
+E +K+L++ GA+P A +K+ + T L A + + + L D KS ++ N G
Sbjct: 153 LEXIKILVQLGASPTAKDKA-DETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQG 211
Query: 328 LTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
+ LH A ++ ++ G D+N +++ PL+ ++
Sbjct: 212 NSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSV 252
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 826 LHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
+H AA Q D ++ L++ ++++G A H AC+ D +L G
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 29/184 (15%)
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFL--VEECNADITLRNFNNR 756
D ++ L++ G + N + T LH A G C D A++L V E ++ ++ +
Sbjct: 34 DEVRRLIETGVSPTIQNR--FGCTALHLACKFG-CVDTAKYLASVGEVHS-----LWHGQ 85
Query: 757 TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
++ A N DL+ L++ + + LL+ C E +
Sbjct: 86 KPIHLAVXANKTDLVVALVEGAKERG----QXPESLLNECD-----------EREVNEIG 130
Query: 817 RTIKH--GSTALH--TAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVT 872
+KH G TALH L+ IK+L++ A A+DK + A + +N + +
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALD 190
Query: 873 FLLD 876
D
Sbjct: 191 LXXD 194
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 587 DSPLHLACATGNMDMIT-YAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDV 645
D A G++D + Y K DVN + G PLH A G LE ++FLL K D+
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADI 66
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
N K T L A Y+ + V++LL AD
Sbjct: 67 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 313 DYGAE-KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
DY A+ + VN G PLH A LEI++ LL KGADIN+ + TPL A+ +
Sbjct: 25 DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84
Query: 372 CLEVFNYLVNHGCDLSV--PEG 391
+ L++ G D +V P+G
Sbjct: 85 HVSCVKLLLSKGADKTVKGPDG 106
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 726 YASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILD 785
+A GD +++ ++ + + + TL R L++AA L++L+FLL GAD + D
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 786 LKDTSPLLSSCRQGLYEIVDTLLEYNADTNLR 817
+PLLS+ +G V LL AD ++
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 436 ASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPI 494
L+ + G D+ L G LH A G L ++ +L+ K DIN+ + TP+
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 495 YFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHV 529
A+ H+ LLL GAD VK T
Sbjct: 78 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 790 SPLLSSC--------RQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
PL S C + G + V + D N RT++ G LH AA QL+I++ L
Sbjct: 1 GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFL 59
Query: 842 LKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
L ADINA DK+ SA + V LL G++
Sbjct: 60 LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 390 EGERTALHMASQFGNLEMVNYLL-KHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAG 448
EG R LH A+ G LE++ +LL K +IN DK TPL ++ + + ++ G
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY-EGHVSCVKLLLSKG 96
Query: 449 ADIKAKLMDGTTAL 462
AD K DG TA
Sbjct: 97 ADKTVKGPDGLTAF 110
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 475 NYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFA 534
+Y+ K D+N + G+ P+++A LEI LL GAD+ K + T L A
Sbjct: 25 DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84
Query: 535 SIEMVSFLLS 544
+ V LLS
Sbjct: 85 HVSCVKLLLS 94
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
D A+ N D++ VK + KG + + R LH AA ++I++ L GA+
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD- 65
Query: 319 SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCT 362
+N + +TPL A + VK+LL KGAD DG T
Sbjct: 66 -INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
A+ +G L+ VK + K DVN + G L +A +L+++E LL AD+N D
Sbjct: 14 ALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 685 Y-TPLYTALMKDPSLDIIKMLVKYGAD 710
+ TPL +A+ + + +K+L+ GAD
Sbjct: 73 HITPLLSAVYEG-HVSCVKLLLSKGAD 98
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K WAL+ D K V KG +N R + PLH A +E+++
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVN-----------RTLEGGRKPLHYAADCGQLEILE 57
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSV 320
LL KGA+ A +K + T L A V VKLL GA+K+V
Sbjct: 58 FLLLKGADINAPDK-HHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 496 FAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF-LLSHIGVNLQDNK 554
+A+KN L+ + G DV ++ LH A + +E++ F LL +N D
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS 588
TPL A+ + L++ AD T+ D
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 833 NQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMTFE 892
LD +K + D+N + G+ H A +I+ FLL G++I K+ +T
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 893 SSKVVEKHVA 902
S V E HV+
Sbjct: 78 LSAVYEGHVS 87
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 766 NNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTA 825
+LD +K + G D + PL + G EI++ LL AD N KH T
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD-KHHITP 76
Query: 826 LHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
L +A + + +KLLL AD + G AF +
Sbjct: 77 LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 190 EEELTNIFKKFDLLEHPEYLSHSQ--------GYKALCWALQEKKTDIAKLLVDKGVPLN 241
++E K DL E +Y++ + G K L +A + +I + L+ KG +N
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 242 LVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGAN 283
DK TPL SA+ + VKLLL KGA+
Sbjct: 68 APDK-----------HHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 340 LEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER-TALHM 398
L+ VK + KG D+N + G PL A LE+ +L+ G D++ P+ T L
Sbjct: 20 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLS 79
Query: 399 ASQFGNLEMVNYLL 412
A G++ V LL
Sbjct: 80 AVYEGHVSCVKLLL 93
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 587 DSPLHLACATGNMDMIT-YAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDV 645
D A G++D + Y K DVN + G PLH A G LE ++FLL K D+
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADI 61
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
N K T L A Y+ + V++LL AD
Sbjct: 62 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 313 DYGAE-KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
DY A+ + VN G PLH A LEI++ LL KGADIN+ + TPL A+ +
Sbjct: 20 DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 79
Query: 372 CLEVFNYLVNHGCDLSV--PEG 391
+ L++ G D +V P+G
Sbjct: 80 HVSCVKLLLSKGADKTVKGPDG 101
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 726 YASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILD 785
+A GD +++ ++ + + + TL R L++AA L++L+FLL GAD + D
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 786 LKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLK 843
+PLLS+ +G V LL AD ++ G TAL A NQ IK LL+
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG-PDGLTALE--ATDNQ--AIKALLQ 118
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 436 ASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPI 494
L+ + G D+ L G LH A G L ++ +L+ K DIN+ + TP+
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 495 YFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCL 527
A+ H+ LLL GAD VK T L
Sbjct: 73 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 390 EGERTALHMASQFGNLEMVNYLL-KHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAG 448
EG R LH A+ G LE++ +LL K +IN DK TPL ++ + + ++ G
Sbjct: 33 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY-EGHVSCVKLLLSKG 91
Query: 449 ADIKAKLMDGTTAL 462
AD K DG TAL
Sbjct: 92 ADKTVKGPDGLTAL 105
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
RT++ G LH AA QL+I++ LL ADINA DK+ SA + V LL
Sbjct: 30 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 89
Query: 877 AGSN 880
G++
Sbjct: 90 KGAD 93
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 475 NYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFA 534
+Y+ K D+N + G+ P+++A LEI LL GAD+ K + T L A
Sbjct: 20 DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 79
Query: 535 SIEMVSFLLS 544
+ V LLS
Sbjct: 80 HVSCVKLLLS 89
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
D A+ N D++ VK + KG + + R LH AA ++I++ L GA+
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD- 60
Query: 319 SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPL 364
+N + +TPL A + VK+LL KGAD DG T L
Sbjct: 61 -INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
K WAL+ D K V KG +N R + PLH A +E+++
Sbjct: 4 KEFMWALKNGDLDEVKDYVAKGEDVN-----------RTLEGGRKPLHYAADCGQLEILE 52
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
LL KGA+ A +K + T L A V VKLL GA+K+V + GLT L
Sbjct: 53 FLLLKGADINAPDK-HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD--GLTAL 105
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
A+ +G L+ VK + K DVN + G L +A +L+++E LL AD+N D
Sbjct: 9 ALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 685 Y-TPLYTALMKDPSLDIIKMLVKYGAD 710
+ TPL +A+ + + +K+L+ GAD
Sbjct: 68 HITPLLSAVY-EGHVSCVKLLLSKGAD 93
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 496 FAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF-LLSHIGVNLQDNK 554
+A+KN L+ + G DV ++ LH A + +E++ F LL +N D
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS 588
TPL A+ + L++ AD T+ D
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 835 LDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMTFESS 894
LD +K + D+N + G+ H A +I+ FLL G++I K+ +T S
Sbjct: 15 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLS 74
Query: 895 KVVEKHVA 902
V E HV+
Sbjct: 75 AVYEGHVS 82
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 340 LEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER-TALHM 398
L+ VK + KG D+N + G PL A LE+ +L+ G D++ P+ T L
Sbjct: 15 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLS 74
Query: 399 ASQFGNLEMVNYLL-KHININHQDKDGWTPLTCS 431
A G++ V LL K + + DG T L +
Sbjct: 75 AVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 190 EEELTNIFKKFDLLEHPEYLSHSQ--------GYKALCWALQEKKTDIAKLLVDKGVPLN 241
++E K DL E +Y++ + G K L +A + +I + L+ KG +N
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 242 LVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGAN 283
DK TPL SA+ + VKLLL KGA+
Sbjct: 63 APDK-----------HHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 761 FAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIK 820
+A +LD +K + G D + PL + G EI++ LL AD N K
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD-K 66
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
H T L +A + + +KLLL AD + G A +
Sbjct: 67 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEA 107
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTPIYFAIKNNHLEIF 506
D+ A++ DGTT L LA M+ L+ H D+N+ +DLGK+ +++A N+++
Sbjct: 5 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 64
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
+LLK GA+ ++ T L +A S E LL H
Sbjct: 65 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 103
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 745 NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIV 804
+AD+ + ++AL++AA NN+D LLK GA+ D+ + K+ +PL + R+G YE
Sbjct: 38 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETA 97
Query: 805 DTLLEYNADTNL 816
LL++ A+ ++
Sbjct: 98 KVLLDHFANRDI 109
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G TPL +A R +++ L++ AD+N+ +D G + L A A N ++ L+ +G +
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 74
Query: 387 SVPEG-ERTALHMASQFGNLEMVNYLLKH 414
+ E T L +A++ G+ E LL H
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDH 103
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 638 LNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPS 697
L + D++ + DG+T L A ++E L+ ++ADVN D +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 698 LDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADIT 749
+D +L+K GA+ ++ N TPL A+ G L N DIT
Sbjct: 61 VDAAVVLLKNGANKDMQNNK--EETPLFLAAREGSYETAKVLLDHFANRDIT 110
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 373 LEVFNYLVNHGCDLSVPEGER-TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC 430
LEV V D S P E TALH A N +V++L+ N+N D GWTPL C
Sbjct: 34 LEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC 93
Query: 431 SIKGQASLEVFHSIIEAGADIKA-KLMDGTTAL 462
+ ++ + ++++ GA I A L DG TA
Sbjct: 94 AASCNDTV-ICMALVQHGAAIFATTLSDGATAF 125
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 274 VKLLLEKGANPLAIEKSR-NRTALHV-AAIVESVDIVKLLFDYGAEKSVN---VQNVAGL 328
++ +L K +P ++R N L + AA+ +++V+ A K +N N G+
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQ-----QAVKEMNDPSQPNEEGI 55
Query: 329 TPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG 383
T LH A IV L+ GA++NS + G TPL CA + N + LV HG
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 829 AAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
AA +L++++ +K D + ++ G A H+A N+ IV FL+ AG+N+
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHC 561
LE+ +K D + + T LH A A+ +V FL++ VN D+ G TPLHC
Sbjct: 34 LEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC 93
Query: 562 AIVGNQLEVFNHLINSNADI 581
A N + L+ A I
Sbjct: 94 AASCNDTVICMALVQHGAAI 113
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAE 851
LL + G E+V ++ D + + + G TALH A I+ L+ A++N+
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKAT 885
D +G H A + I L+ G+ I T
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Score = 33.9 bits (76), Expect = 0.53, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 436 ASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPI 494
LEV ++ D +G TALH A N ++V++L+ ++NS + G TP+
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Query: 495 YFAIKNNHLEIFNLLLKLGADV 516
+ A N I L++ GA +
Sbjct: 92 HCAASCNDTVICMALVQHGAAI 113
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 399 ASQFGNLEMVNYLLKHININHQ-DKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A+ G LE+V +K +N Q +++G T L +I G A+ + +I AGA++ +
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSPDSH 86
Query: 458 GTTALHLACYFGNLAMVNYLVKH 480
G T LH A + + LV+H
Sbjct: 87 GWTPLHCAASCNDTVICMALVQH 109
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 246 GVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESV 305
G P R + L A L ++E+V+ +++ +P + TALH A +
Sbjct: 9 GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANY 67
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGN-DDGCT 362
IV L GA +VN + G TPLH A I L+ GA I + DG T
Sbjct: 68 SIVDFLITAGA--NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGAT 123
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 26/153 (16%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
AA L++++ +K DP + + + L ++ Y IVD L+ A+ N H
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSH 86
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
G T LH AA N I L+++ A I A T L D +
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAAIFA---------------------TTLSDGATAF 125
Query: 882 EKATKYRMTFESSKV----VEKHVAKLRAANIY 910
EK YR + VE+ + + + +Y
Sbjct: 126 EKCDPYREGYADCATYLADVEQSMGLMNSGAVY 158
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 629 GCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDG-TYTP 687
G LE V+ + N D + ++G TAL A +V+ L+ A A+VN D +TP
Sbjct: 32 GELEVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP 90
Query: 688 LYTALMKDPSLDIIKMLVKYGADVNLT 714
L+ A + ++ I LV++GA + T
Sbjct: 91 LHCAASCNDTV-ICMALVQHGAAIFAT 116
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 735 DIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPL-- 792
++ + V+E N D + N TAL+ A G N ++ FL+ AGA+ + D +PL
Sbjct: 35 EVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC 93
Query: 793 LSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTAL 826
+SC + I L+++ A T+ G+TA
Sbjct: 94 AASCNDTV--ICMALVQHGAAIFATTLSDGATAF 125
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 258 TDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAE 317
+D L +A +E V+ LLE GA+P A+ + R + V ++ S + +LL +GAE
Sbjct: 12 SDAGLATAAARGQVETVRQLLEAGADPNALNRF-GRRPIQV-MMMGSAQVAELLLLHGAE 69
Query: 318 KSVNVQNVAGLT-PLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVF 376
N + A LT P+H A R L+ + +L GA ++ + G P+ A Q ++
Sbjct: 70 P--NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIA 127
Query: 377 NYL 379
YL
Sbjct: 128 RYL 130
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 758 ALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLR 817
L AA ++ ++ LL+AGADP+ L+ P + G ++ + LL + A+ N
Sbjct: 15 GLATAAARGQVETVRQLLEAGADPNALNRFGRRP-IQVMMMGSAQVAELLLLHGAEPNCA 73
Query: 818 TIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
+ +H AA LD + +L + A ++ D +G++ A + + DI +L
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 780 DPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIK 839
D D +D + LL G + V L E AD + R ++ G TALH AA + + ++++
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 840 LLLKYNADINAEDKYGKIAFHSA 862
L++ ADI ED+ G A A
Sbjct: 129 ALVELGADIEVEDERGLTALELA 151
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 247 VPLNY--SRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVES 304
VP +Y + + E +TP +A +D + + LLE + A++++ RTAL A + S
Sbjct: 32 VPSSYIAADVVSEYETPWWTAARKADEQALSQLLED-RDVDAVDEN-GRTALLFVAGLGS 89
Query: 305 VDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPL 364
V+LL + GA+ + GLT LH+A E+V+ L++ GADI ++ G T L
Sbjct: 90 DKCVRLLAEAGADLD-HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 36.2 bits (82), Expect = 0.100, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 387 SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSII 445
+V E RTAL + G+ + V L + +++H+D G G EV +++
Sbjct: 72 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 446 EAGADIKAKLMDGTTALHLA 465
E GADI+ + G TAL LA
Sbjct: 132 ELGADIEVEDERGLTALELA 151
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 477 LVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVK-MKSNFTCLHVACEFAS 535
L++ D+++ ++ G+T + F + LL + GAD+ + M+ T LH+A +
Sbjct: 64 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123
Query: 536 IEMVSFLLS-HIGVNLQDNKGCTPLHCA 562
E+V L+ + ++D +G T L A
Sbjct: 124 PEVVEALVELGADIEVEDERGLTALELA 151
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 587 DSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
++P A + ++ ++ DV+ ++ G T L G + V+ LL D++
Sbjct: 46 ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVR-LLAEAGADLD 104
Query: 647 HK-TKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
H+ + G TAL A R ++VE L+E AD+ + D
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 141
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 780 DPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIK 839
D D +D + LL G + V L E AD + R ++ G TALH AA + + ++++
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 840 LLLKYNADINAEDKYGKIAFHSA 862
L++ ADI ED+ G A A
Sbjct: 128 ALVELGADIEVEDERGLTALELA 150
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 247 VPLNY--SRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVES 304
VP +Y + + E +TP +A +D + + LLE + A++++ RTAL A + S
Sbjct: 31 VPSSYIAADVVSEYETPWWTAARKADEQALSQLLED-RDVDAVDEN-GRTALLFVAGLGS 88
Query: 305 VDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPL 364
V+LL + GA+ + GLT LH+A E+V+ L++ GADI ++ G T L
Sbjct: 89 DKCVRLLAEAGADLD-HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 36.2 bits (82), Expect = 0.100, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 387 SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSII 445
+V E RTAL + G+ + V L + +++H+D G G EV +++
Sbjct: 71 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 446 EAGADIKAKLMDGTTALHLA 465
E GADI+ + G TAL LA
Sbjct: 131 ELGADIEVEDERGLTALELA 150
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 477 LVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVK-MKSNFTCLHVACEFAS 535
L++ D+++ ++ G+T + F + LL + GAD+ + M+ T LH+A +
Sbjct: 63 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 122
Query: 536 IEMVSFLLS-HIGVNLQDNKGCTPLHCA 562
E+V L+ + ++D +G T L A
Sbjct: 123 PEVVEALVELGADIEVEDERGLTALELA 150
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 587 DSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVN 646
++P A + ++ ++ DV+ ++ G T L G + V+ LL D++
Sbjct: 45 ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVR-LLAEAGADLD 103
Query: 647 HK-TKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
H+ + G TAL A R ++VE L+E AD+ + D
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 140
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 428 LTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSE 486
L + QASL + II+ G + AK DG TALH A + + L+K + +
Sbjct: 177 LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 236
Query: 487 NDLGKTPIYFAIKNNHLEIFNLL 509
N+ G+T + A K +H E LL
Sbjct: 237 NEAGETALDIARKKHHKECEELL 259
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAF 859
G+TALH AA +NQ D +KLLLK A + ++ G+ A
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 244
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 241 NLVDKGVPLNYSRRIIETDTPLHSAIL---NSDIELVKLLLEKGANPLAIEKSRNRTALH 297
N D G PL + LH A+ + + LV +++ G + L + + TALH
Sbjct: 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALH 212
Query: 298 VAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACR---RKCLEIVK 344
AA+ D +KLL V N AG T L IA + ++C E+++
Sbjct: 213 YAALYNQPDCLKLLLK--GRALVGTVNEAGETALDIARKKHHKECEELLE 260
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 428 LTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSE 486
L + QASL + II+ G + AK DG TALH A + + L+K + +
Sbjct: 196 LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 255
Query: 487 NDLGKTPIYFAIKNNHLEIFNLL 509
N+ G+T + A K +H E LL
Sbjct: 256 NEAGETALDIARKKHHKECEELL 278
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 798 QGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKI 857
Q +VD +++ + + G+TALH AA +NQ D +KLLLK A + ++ G+
Sbjct: 203 QASLPLVDFIIQNGGHLDAKAAD-GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 261
Query: 858 AF 859
A
Sbjct: 262 AL 263
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 241 NLVDKGVPLNYSRRIIETDTPLHSAIL---NSDIELVKLLLEKGANPLAIEKSRNRTALH 297
N D G PL + LH A+ + + LV +++ G + L + + TALH
Sbjct: 173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALH 231
Query: 298 VAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACR---RKCLEIVK 344
AA+ D +KLL V N AG T L IA + ++C E+++
Sbjct: 232 YAALYNQPDCLKLLLK--GRALVGTVNEAGETALDIARKKHHKECEELLE 279
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 284 PLAIEKSRNRTALHVAAIVESVDIVKL-LFDYGAEKSVNV--QNVAGLTPLHIACRRKCL 340
PLA + TALH+A V SVD L + D+ + S N+ Q G T LH C
Sbjct: 161 PLANGHEPDETALHLA--VRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA 218
Query: 341 EIVKILLDKGADINSGNDDGCTPL 364
E +K+LL A I N+ G TPL
Sbjct: 219 ECLKLLLRGKASIEIANESGETPL 242
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 217 ALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSD---IEL 273
+LC A+ K DI LL ++L +K +PL ET LH A+ + D + +
Sbjct: 133 SLCEAV--KTRDIFGLLQAYADGVDLTEK-IPLANGHEPDET--ALHLAVRSVDRTSLHI 187
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V L++ N L + + TALH + ++ + +KLL + S+ + N +G TPL I
Sbjct: 188 VDFLVQNSGN-LDKQTGKGSTALHYCCLTDNAECLKLLLR--GKASIEIANESGETPLDI 244
Query: 334 ACRRK 338
A R K
Sbjct: 245 AKRLK 249
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 619 ETPLHVAVS---HGCLEAVKFLL-NTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
ET LH+AV L V FL+ N+ N+D +T GSTAL + C + +++LL
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLD--KQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 675 NADVNLG-DGTYTPL 688
A + + + TPL
Sbjct: 228 KASIEIANESGETPL 242
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 761 FAAFGNNLDLL-KFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTI 819
A+ + +DL K L G +PD L + S R L+ IVD L++ + + + +T
Sbjct: 147 LQAYADGVDLTEKIPLANGHEPDETALH--LAVRSVDRTSLH-IVDFLVQNSGNLDKQTG 203
Query: 820 KHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGS 879
K GSTALH + + +KLLL+ A I ++ G+ A + K+ L A S
Sbjct: 204 K-GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262
Query: 880 N 880
Sbjct: 263 G 263
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 557 TPLHCAIVG---NQLEVFNHLI--NSNADITMYKNDSPLHLACATGNMDMITYAMK-YFD 610
T LH A+ L + + L+ + N D K + LH C T N + + ++
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 611 VNIENDIGETPLHVA 625
+ I N+ GETPL +A
Sbjct: 231 IEIANESGETPLDIA 245
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 435 QASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVK-HIDINSENDLGKTP 493
+ SL + +++ ++ + G+TALH C N + L++ I N+ G+TP
Sbjct: 182 RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP 241
Query: 494 IYFA--IKNNHLE 504
+ A +K+ H E
Sbjct: 242 LDIAKRLKHEHCE 254
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 330 PLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV- 388
PLH A + +IVKILL G D + +D G T L+ A+ + V L
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFY 124
Query: 389 -PEGERTALHMASQFGNLEMVNYLLKHI 415
G +T+ + A ++ +V+Y L I
Sbjct: 125 GKTGWKTSFYHAVXLNDVSIVSYFLSEI 152
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 252 SRRIIETDTPLHSA----ILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDI 307
S+ + D HSA I ++++ LV LL GA +E N LH AA +E I
Sbjct: 21 SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDTKI 77
Query: 308 VKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGC-TPLFC 366
VK+L G + S + G T L+ A + VK+ + K + G T +
Sbjct: 78 VKILLFSGLDDS--QFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYH 135
Query: 367 AIAQNCLEVFNYLVN 381
A+ N + + +Y ++
Sbjct: 136 AVXLNDVSIVSYFLS 150
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 552 DNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAM-KYFD 610
D G + + AI N + + L+N+ A + +N+ PLH A + ++ + D
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLD 87
Query: 611 VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFF 658
+ +D G T L+ AV G + VK + KN + K G F+
Sbjct: 88 DSQFDDKGNTALYYAVDSGNXQTVKLFVK-KNWRLXFYGKTGWKTSFY 134
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 756 RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTN 815
+A +A NN+ L+ LL AGA ++L+ + PL + +IV LL D +
Sbjct: 32 HSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDS 89
Query: 816 LRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG-KIAFHSACQAKNWDIVTFL 874
K G+TAL+ A +KL +K N + K G K +F+ A + IV++
Sbjct: 90 QFDDK-GNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYF 148
Query: 875 L 875
L
Sbjct: 149 L 149
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 443 SIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNN 501
+++ AGA L++ LH A + +V L+ +D + +D G T +Y+A+ +
Sbjct: 49 TLLNAGA--LKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG 106
Query: 502 HLEIFNLLLKLGADVAVKMKSNF-TCLHVACEFASIEMVSFLLSHI 546
+ + L +K + K+ + T + A + +VS+ LS I
Sbjct: 107 NXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSEI 152
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 18/155 (11%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRR--IIETDTPLHSAILNSD 270
QG+ AL A++++ KLLV+ G ++L G + + PL A
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 271 IELVKLLLEKGANPLAIEK--SRNRTALHVAAIV-----ESVDIVKLLFD----YGAEKS 319
++V LLE P ++E S T LH ++ E+ +V ++D GA
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208
Query: 320 VNVQ-----NVAGLTPLHIACRRKCLEIVKILLDK 349
VQ N GLTPL +A + +EI + +L +
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAED-------------KYGKIAFHSACQAKN 867
G +ALH A L +KLL++ AD++ +G++ A K
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 868 WDIVTFLLD 876
WD+VT+LL+
Sbjct: 149 WDVVTYLLE 157
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 34/186 (18%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G + LHIA ++ L+ VK+L++ GAD++ C F C F L
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHL---RACGRFFQKHQGTCF-YFGEL------- 138
Query: 387 SVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIE 446
L +A+ ++V YLL++ HQ P + V H+++
Sbjct: 139 --------PLSLAACTKQWDVVTYLLEN---PHQ------PASLEATDSLGNTVLHALV- 180
Query: 447 AGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINS-ENDLGKTPIYFAIKNNHLEI 505
+ A +AL + Y G L M L + + N G TP+ A K +EI
Sbjct: 181 ----MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236
Query: 506 FNLLLK 511
F +L+
Sbjct: 237 FRHILQ 242
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 554 KGCTPLHCAIVGNQLEVFNHLINSNADITM---------------YKNDSPLHLACATGN 598
+G + LH AI L+ L+ + AD+ + Y + PL LA T
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 599 MDMITYAM----KYFDVNIENDIGETPLHVAV 626
D++TY + + + + +G T LH V
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 18/155 (11%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRR--IIETDTPLHSAILNSD 270
QG+ AL A++++ KLLV+ G ++L G + + PL A
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 271 IELVKLLLEKGANPLAIEK--SRNRTALHVAAIV-----ESVDIVKLLFD----YGAEKS 319
++V LLE P ++E S T LH ++ E+ +V ++D GA
Sbjct: 162 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 221
Query: 320 VNVQ-----NVAGLTPLHIACRRKCLEIVKILLDK 349
VQ N GLTPL +A + +EI + +L +
Sbjct: 222 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 256
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAED-------------KYGKIAFHSACQAKN 867
G +ALH A L +KLL++ AD++ +G++ A K
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 868 WDIVTFLLD 876
WD+VT+LL+
Sbjct: 162 WDVVTYLLE 170
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 34/186 (18%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G + LHIA ++ L+ VK+L++ GAD++ C F C F L
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHL---RACGRFFQKHQGTCF-YFGEL------- 151
Query: 387 SVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIE 446
L +A+ ++V YLL++ HQ P + V H+++
Sbjct: 152 --------PLSLAACTKQWDVVTYLLEN---PHQ------PASLEATDSLGNTVLHALV- 193
Query: 447 AGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINS-ENDLGKTPIYFAIKNNHLEI 505
+ A +AL + Y G L M L + + N G TP+ A K +EI
Sbjct: 194 ----MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 249
Query: 506 FNLLLK 511
F +L+
Sbjct: 250 FRHILQ 255
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 262 LHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVN 321
L +A +E V+ LLE GANP A S R + V ++ S + +LL +GAE N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQV-MMMGSARVAELLLLHGAEP--N 71
Query: 322 VQNVAGLT-PLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+ A LT P+H A R L+ + +L GA ++ + G P+ A +V YL
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 28/123 (22%)
Query: 288 EKSRNRTALHVAAIVESV---DIVKLLFDYGAEKSVNVQNV----------AGLTPLHIA 334
E S +T L A + S D + +L D AEK+ N++ G T LHIA
Sbjct: 42 EPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTALHIA 100
Query: 335 CRRKCLEIVKILLDKGADINSG--------NDDGC------TPLFCAIAQNCLEVFNYLV 380
R+C V++L++KGAD+++ D+G PL A N + +YL
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160
Query: 381 NHG 383
+G
Sbjct: 161 ENG 163
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 445 IEAGADIKAKLMDGTTALHL-ACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHL 503
+ G D L+ T A L AC F L ++N + G+ P++ A H
Sbjct: 229 VNGGQDNATPLIQATAANSLLACEF-------LLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 504 EIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+ L LK GAD+ + L +A E A+ ++V+ L
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 758 ALNFAAFGN--NLDLLKFLLKAGADPDILD--LKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
AL F A G+ +L + L GAD + ++ + +PL+ + + LL+ A+
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
N + G LH A + L LK AD+ A D G+ A + N DIVT
Sbjct: 261 VN-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 874 L 874
L
Sbjct: 320 L 320
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 13/154 (8%)
Query: 688 LYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI--ARFLVEECN 745
L+ A PSL + + +GADVN N TPL A+ N + FL++
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA---ANSLLACEFLLQN-G 258
Query: 746 ADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
A++ + R L+ A + L LK GAD D + PL + +IV
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV- 317
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIK 839
TLL L ++ A A LDI +
Sbjct: 318 TLLR------LAKMREAEAAQGQAGDETYLDIFR 345
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 246 GVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESV 305
G +N+ + TPL A + + + LL+ GAN + S R LH A I+
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHT 281
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKIL 346
+ L GA+ + ++ G PL IA +IV +L
Sbjct: 282 GLACLFLKRGAD--LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
N T L A S+ + L GA +VN + AG PLH A + + L +GA
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGA--NVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 352 DINSGNDDGCTPLFCAI 368
D+ + + +G PL A+
Sbjct: 293 DLGARDSEGRDPLTIAM 309
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 445 IEAGADIKAKLMDGTTALHL-ACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHL 503
+ G D L+ T A L AC F L ++N + G+ P++ A H
Sbjct: 229 VNGGQDNATPLIQATAANSLLACEF-------LLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 504 EIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+ L LK GAD+ + L +A E A+ ++V+ L
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 758 ALNFAAFGN--NLDLLKFLLKAGADPDILD--LKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
AL F A G+ +L + L GAD + ++ + +PL+ + + LL+ A+
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
N + G LH A + L LK AD+ A D G+ A + N DIVT
Sbjct: 261 VN-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 874 L 874
L
Sbjct: 320 L 320
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 13/154 (8%)
Query: 688 LYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI--ARFLVEECN 745
L+ A PSL + + +GADVN N TPL A+ N + FL++
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA---ANSLLACEFLLQN-G 258
Query: 746 ADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
A++ + R L+ A + L LK GAD D + PL + +IV
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV- 317
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIK 839
TLL L ++ A A LDI +
Sbjct: 318 TLL------RLAKMREAEAAQGQAGDETYLDIFR 345
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 246 GVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESV 305
G +N+ + TPL A + + + LL+ GAN + S R LH A I+
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHT 281
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKIL 346
+ L GA+ + ++ G PL IA +IV +L
Sbjct: 282 GLACLFLKRGAD--LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
N T L A S+ + L GA +VN + AG PLH A + + L +GA
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGA--NVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 352 DINSGNDDGCTPLFCAI 368
D+ + + +G PL A+
Sbjct: 293 DLGARDSEGRDPLTIAM 309
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 758 ALNFAAFGN--NLDLLKFLLKAGADPDILD--LKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
AL F A G+ +L + L GAD + ++ + +PL+ + + LL+ A+
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
N + G LH A + L LK AD+ A D G+ A + N DIVT
Sbjct: 261 VN-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 874 L 874
L
Sbjct: 320 L 320
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 445 IEAGADIKAKLMDGTTALHL-ACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHL 503
+ G D L+ T A L AC F L ++N + G+ P++ A H
Sbjct: 229 VNGGQDNATPLIQATAANSLLACEF-------LLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 504 EIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+ L LK GAD+ + L +A E A+ ++V+ L
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 13/154 (8%)
Query: 688 LYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI--ARFLVEECN 745
L+ A PSL + + +GADVN N TPL A+ N + FL++
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA---ANSLLACEFLLQN-G 258
Query: 746 ADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
A++ + R L+ A + L LK GAD D + PL + +IV
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV- 317
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIK 839
TLL L ++ A A LDI +
Sbjct: 318 TLLR------LAKMREAEAAQGQAGDETYLDIFR 345
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 246 GVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESV 305
G +N+ + TPL A + + + LL+ GAN + S R LH A I+
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHT 281
Query: 306 DIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKIL 346
+ L GA+ + ++ G PL IA +IV +L
Sbjct: 282 GLACLFLKRGAD--LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
N T L A S+ + L GA +VN + AG PLH A + + L +GA
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGA--NVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 352 DINSGNDDGCTPLFCAI 368
D+ + + +G PL A+
Sbjct: 293 DLGARDSEGRDPLTIAM 309
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 36/170 (21%)
Query: 458 GTTALHLACYFGNLAMVNYLVKH-IDINSEND--------------LGKTPIYFAIKNNH 502
G TALH+A N +V LV++ D+ + + G+ P+ A N
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 503 LEIFNLLLK---LGADVAVKMKSNFTCLHVACEFA--SIEMVSFLLSHIGVNLQDNKGCT 557
L I LL+ AD++ + T LH E A +++ F+ S L
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEIL------- 213
Query: 558 PLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMK 607
I+G +L H +IT K +PL LA ++G + ++ Y ++
Sbjct: 214 -----ILGAKL----HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 26/133 (19%)
Query: 735 DIAR---FLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSP 791
D+AR L + NA T + +TAL+ A N L+ L++ GAD D
Sbjct: 78 DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFK 137
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN---ADI 848
+ R G Y G L AA NQL I+K LL+ + ADI
Sbjct: 138 K-TKGRPGFY-------------------FGELPLSLAACTNQLAIVKFLLQNSWQPADI 177
Query: 849 NAEDKYGKIAFHS 861
+A D G H+
Sbjct: 178 SARDSVGNTVLHA 190
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 222 LQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKG 281
L + D LL+D + + + V +Y+ + T LH AI + LV LL+E G
Sbjct: 65 LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENG 124
Query: 282 ANPLA------IEKSRNRTA-------LHVAAIVESVDIVKLLFDYGAEKS-VNVQNVAG 327
A+ A +K++ R L +AA + IVK L + + ++ ++ G
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVG 184
Query: 328 LTPLH 332
T LH
Sbjct: 185 NTVLH 189
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 17/142 (11%)
Query: 532 EFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLH 591
EF E L +NL + + T V + + +N++ + YK + LH
Sbjct: 47 EFKDPETGKTCLLKAXLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALH 106
Query: 592 LACATGNMDMITYAMKY-FDVNIEND--------------IGETPLHVAVSHGCLEAVKF 636
+A N ++T ++ DV + GE PL +A L VKF
Sbjct: 107 IAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166
Query: 637 LLNT--KNIDVNHKTKDGSTAL 656
LL + D++ + G+T L
Sbjct: 167 LLQNSWQPADISARDSVGNTVL 188
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 813 DTNLRTIKHGSTALHTAAF--HN-QLDIIKLLL---------KYNADINAEDKY--GKIA 858
D+ + + G T L A HN Q D I LLL K + + D Y G+ A
Sbjct: 45 DSEFKDPETGKTCLLKAXLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTA 104
Query: 859 FHSACQAKNWDIVTFLLDAGSNIEKA 884
H A + +N +VT L++ G++++ A
Sbjct: 105 LHIAIERRNXTLVTLLVENGADVQAA 130
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 18/155 (11%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRR--IIETDTPLHSAILNSD 270
+G+ AL A++++ KLLV+ G ++ G + + PL A
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 271 IELVKLLLEKGANPLAIEK--SRNRTALHVAAIV-----ESVDIVKLLFD----YGAEKS 319
++V LLE P +++ S+ T LH + E++ +V +D GA
Sbjct: 154 WDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLC 213
Query: 320 VNVQ-----NVAGLTPLHIACRRKCLEIVKILLDK 349
VQ N+ LTPL +A + +EI + +L +
Sbjct: 214 PTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQR 248
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAED-------------KYGKIAFHSACQAKN 867
G +ALH A L +KLL++ A+++A +G++ A K
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 868 WDIVTFLLD 876
WD+V++LL+
Sbjct: 154 WDVVSYLLE 162
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 25/99 (25%)
Query: 306 DIVKLLFDYGAEKSVNVQNV----------AGLTPLHIACRRKCLEIVKILLDKGADINS 355
D + +L D AE++ N++ G T LHIA R+C V++L+ +GAD+++
Sbjct: 61 DTIPVLLDI-AERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVAQGADVHA 119
Query: 356 G--------NDDGC------TPLFCAIAQNCLEVFNYLV 380
D+G PL A N + NYL
Sbjct: 120 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLT 158
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 282 ANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
AN L + S T L++AA + ++ IV L DYGA+ + N +GL P+
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--IANKSGLRPVDFGA 324
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 289 KSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLD 348
K ++ +I+E++D+ ++ + +N Q+ G T L+IA R + IV LLD
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANM-----LNAQDSNGDTCLNIAARLGNISIVDALLD 304
Query: 349 KGADINSGNDDGCTPL 364
GAD N G P+
Sbjct: 305 YGADPFIANKSGLRPV 320
>pdb|3G77|A Chain A, Bacterial Cytosine Deaminase V152aF316CD317G MUTANT
Length = 423
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
+R+ + VK +L+ G ++ G+DD C P + N L+V ++ H C L
Sbjct: 288 KRRGITRVKEMLESGINVCFGHDDVCGPWYPLGTANMLQVL-HMGLHVCQL 337
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 20/84 (23%)
Query: 636 FLLNTKNIDVNHKTKDGSTALFFACYD-------KRLDLVEILLEANADVNLGDGTYTPL 688
FL+N K D+ +TK+G+T LFF + +L +I LE AD+
Sbjct: 60 FLIN-KGADIKSRTKEGTT-LFFPLFQGGGNDITGTTELCKIFLEKGADI---------- 107
Query: 689 YTALMKDPSLDIIKMLVKYGADVN 712
TAL K + + K + Y D N
Sbjct: 108 -TALYKPYKIVVFKNIFNYFVDEN 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,141,646
Number of Sequences: 62578
Number of extensions: 1245316
Number of successful extensions: 6229
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2854
Number of HSP's gapped (non-prelim): 1266
length of query: 1011
length of database: 14,973,337
effective HSP length: 108
effective length of query: 903
effective length of database: 8,214,913
effective search space: 7418066439
effective search space used: 7418066439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)