RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8109
(1011 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 380 bits (978), Expect = e-122
Identities = 128/510 (25%), Positives = 197/510 (38%), Gaps = 83/510 (16%)
Query: 315 GAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLE 374
G +GLTPLH+A L IVK LL +GA N N TPL A E
Sbjct: 4 GIS--GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 375 VFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSI 432
V YL+ + + + + ++T LH A++ G+ MV LL++ N N G TPL
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL---- 117
Query: 433 KGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGK 491
H+A G++ V L++ G
Sbjct: 118 ------------------------------HIAAREGHVETVLALLEKEASQACMTKKGF 147
Query: 492 TPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNL 550
TP++ A K + + LLL+ A K+ T LHVA ++++V LL +
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207
Query: 551 QDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFD 610
G TPLH A NQ+EV L+
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSA----------------------------- 238
Query: 611 VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEI 670
N E+ G TPLH+A G E V LL+ K + N K G T L + + + ++
Sbjct: 239 -NAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 671 LLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASY 729
L++ V+ YTPL+ A ++ ++K L+++ ADVN + +PLH A+
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVASHYG-NIKLVKFLLQHQADVNAKTK--LGYSPLHQAAQ 353
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
+G DI L++ A + + T L A + + L + + + D
Sbjct: 354 QG-HTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD- 410
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTI 819
R E VD +L+ + D I
Sbjct: 411 -----KHRMSFPETVDEILDVSEDEGEELI 435
Score = 376 bits (967), Expect = e-121
Identities = 113/430 (26%), Positives = 189/430 (43%), Gaps = 24/430 (5%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH A + +VK LL++GA+P + T LH+AA ++ K L A+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAK-- 72
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
VN + TPLH A R +VK+LL+ A+ N G TPL A + +E L
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 380 VNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQA 436
+ + + T LH+A+++G + + LL+ + N K+G TPL
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN-- 190
Query: 437 SLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIY 495
+L++ ++ G + +G T LH+A + + L+++ N+E+ G TP++
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250
Query: 496 FAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNK 554
A + H E+ LLL A+ + KS T LH+ + + + L+ H + V+
Sbjct: 251 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKY-FDV 611
G TPLH A +++ L+ AD+ SPLH A G+ D++T +K
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNT--KNIDVNHKTKDGSTALFFACYDKRLDLVE 669
N + G TPL +A G + L + V K + + V+
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF---------PETVD 421
Query: 670 ILLEANADVN 679
+L+ + D
Sbjct: 422 EILDVSEDEG 431
Score = 375 bits (965), Expect = e-121
Identities = 130/459 (28%), Positives = 195/459 (42%), Gaps = 48/459 (10%)
Query: 280 KGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKC 339
G + +S T LHVA+ + + IVK L GA NV NV TPLH+A R
Sbjct: 3 PGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGH 59
Query: 340 LEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHM 398
E+ K LL A +N+ D TPL CA + L+ + + ++ T LH+
Sbjct: 60 TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 119
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLM 456
A++ G++E V LL+ + K G+TPL + G + V ++E A A
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG--KVRVAELLLERDAHPNAAGK 177
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+G T LH+A + NL +V L+ +S G TP++ A K N +E+ LL+ G
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHL 574
+ T LH+A + EMV+ LLS NL + G TPLH + V + L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 575 INSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAV 634
I + + +G TPLHVA +G ++ V
Sbjct: 298 IKHGVMV------------------------------DATTRMGYTPLHVASHYGNIKLV 327
Query: 635 KFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALM 693
KFLL DVN KTK G + L A D+V +LL+ A N TPL A
Sbjct: 328 KFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386
Query: 694 KDPSLDIIKML---VKYGADVNLTNEACYYMTPLHYASY 729
+ + +L + V ++++ + M+
Sbjct: 387 LG-YISVTDVLKVVTDETSFVLVSDK--HRMSFPETVDE 422
Score = 366 bits (943), Expect = e-117
Identities = 122/450 (27%), Positives = 187/450 (41%), Gaps = 43/450 (9%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G G T LH+A + G+L +V L++ N N +TP++ A + H E+
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVG 565
LL+ A V K K + T LH A MV LL + NL G TPLH A
Sbjct: 64 KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
Query: 566 NQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVA 625
+E L+ A G TPLHVA
Sbjct: 124 GHVETVLALLEKEASQ------------------------------ACMTKKGFTPLHVA 153
Query: 626 VSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT- 684
+G + + LL ++ N K+G T L A + LD+V++LL +
Sbjct: 154 AKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEEC 744
YTPL+ A ++ +++ + L++YG N + +TPLH A+ G ++ L+ +
Sbjct: 213 YTPLHIAAKQN-QVEVARSLLQYGGSANAESV--QGVTPLHLAAQEG-HAEMVALLLSK- 267
Query: 745 NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIV 804
A+ L N + T L+ A ++ + L+K G D +PL + G ++V
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327
Query: 805 DTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQ 864
LL++ AD N +T K G + LH AA DI+ LLLK A N G A +
Sbjct: 328 KFLLQHQADVNAKT-KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386
Query: 865 AKNWDIVTFL---LDAGSNIEKATKYRMTF 891
+ L D S + + K+RM+F
Sbjct: 387 LGYISVTDVLKVVTDETSFVLVSDKHRMSF 416
Score = 279 bits (716), Expect = 1e-84
Identities = 88/330 (26%), Positives = 156/330 (47%), Gaps = 23/330 (6%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G+ L A +E + L++K + K + TPLH A + +
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTK-----------KGFTPLHVAAKYGKVRV 161
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
+LLLE+ A+P A K+ T LHVA ++DIVKLL G S + G TPLHI
Sbjct: 162 AELLLERDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGG--SPHSPAWNGYTPLHI 218
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGE 392
A ++ +E+ + LL G N+ + G TPL A + E+ L++ + ++ +
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGAD 450
T LH+ +Q G++ + + L+KH + ++ + G+TPL S G ++++ +++ AD
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG--NIKLVKFLLQHQAD 336
Query: 451 IKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLL 509
+ AK G + LH A G+ +V L+K+ N + G TP+ A + ++ + ++L
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Query: 510 LKL---GADVAVKMKSNFTCLHVACEFASI 536
+ + V V K + E +
Sbjct: 397 KVVTDETSFVLVSDKHRMSFPETVDEILDV 426
Score = 253 bits (649), Expect = 3e-75
Identities = 85/309 (27%), Positives = 150/309 (48%), Gaps = 32/309 (10%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G+ L A + K +A+LL+++ N K TPLH A+ ++++++
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-----------NGLTPLHVAVHHNNLDI 194
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
VKLLL +G +P + + T LH+AA V++ + L YG N ++V G+TPLH+
Sbjct: 195 VKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGS--ANAESVQGVTPLHL 251
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGE 392
A + E+V +LL K A+ N GN G TPL + + V + L+ HG +
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGAD 450
T LH+AS +GN+++V +LL+H ++N + K G++PL + +G ++ +++ GA
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG--HTDIVTLLLKNGAS 369
Query: 451 IKAKLMDGTTALHLACYFGNLAMVNYLVKHI----DINSENDLGKTPIYFAIKNNHLEIF 506
DGTT L +A G +++ + L + + + E
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS---------FPETV 420
Query: 507 NLLLKLGAD 515
+ +L + D
Sbjct: 421 DEILDVSED 429
Score = 197 bits (503), Expect = 3e-55
Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 29/249 (11%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
GY L A ++ + ++A+ L+ G N + TPLH A E+
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESV-----------QGVTPLHLAAQEGHAEM 260
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V LLL K AN KS T LH+ A V + +L +G V+ G TPLH+
Sbjct: 261 VALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVM--VDATTRMGYTPLHV 317
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE- 392
A +++VK LL AD+N+ G +PL A Q ++ L+ +G + +
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377
Query: 393 RTALHMASQFGNLEMVNYLLKHI----NINHQDKDGWTPLTCSIKGQASLEVFHSIIEAG 448
T L +A + G + + + L + DK + E I++
Sbjct: 378 TTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP----------ETVDEILDVS 427
Query: 449 ADIKAKLMD 457
D +L+
Sbjct: 428 EDEGEELIS 436
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 297 bits (764), Expect = 1e-92
Identities = 66/382 (17%), Positives = 130/382 (34%), Gaps = 41/382 (10%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+ + +H+A R+ + V+ L++ G N GCT L A C++ YL
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72
Query: 380 VNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLE 439
+ G S+ G + +H+A ++V L + + G P + +
Sbjct: 73 ASVGEVHSLWHG-QKPIHLAVMANKTDLVVAL-----VEGAKERGQMPESL-----LNEC 121
Query: 440 VFHSIIEAGADIKAKLMDGTTALHLACYFGN--LAMVNYLVKH-IDINSENDLGKTPIYF 496
+ E G+ +K G TALH G L M+ LV+ +++ +TP+
Sbjct: 122 DEREVNEIGSHVKHC--KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179
Query: 497 AIKNNHLEIFNLLLKL-----GADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNL 550
A++ + E +L++ + K + LH A ++ + I VN+
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239
Query: 551 QDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFD 610
+DN+ PL+ ++ + + L+ P H
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL--IQACPYHNGT---------------T 282
Query: 611 VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEI 670
V + + + A E ++ L K +V G+ + +
Sbjct: 283 VLPDRVVWLDFVPAAADPSKQEVLQLLQE-KLDEVVRSLNTGAGGAVKRKKKAAPAVKRM 341
Query: 671 LLEANADVNLGDGT-YTPLYTA 691
L +A V + +
Sbjct: 342 KLAPSAPVRTRSRSRARSSAVS 363
Score = 287 bits (736), Expect = 1e-88
Identities = 63/412 (15%), Positives = 132/412 (32%), Gaps = 82/412 (19%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
+H A + V+ L+E G +
Sbjct: 22 EKIHVAARKGQTDEVRRLIETGVS------------------------------------ 45
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+QN G T LH+AC+ C++ K L G + G P+ A+ N ++ L
Sbjct: 46 PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVAL 103
Query: 380 VNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPL-TCSIKGQASL 438
V + + + ++ E+ I + + G T L C G L
Sbjct: 104 VEGAKER-----GQMPESLLNECDEREVNE-----IGSHVKHCKGQTALHWCVGLGPEYL 153
Query: 439 EVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH------IDINSENDLGKT 492
E+ +++ GA AK T L A F N ++ ++ + ++ N G +
Sbjct: 154 EMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213
Query: 493 PIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH----IGV 548
+++AI N ++ +++G DV ++ + L+++ A + + LL +
Sbjct: 214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKY 608
+ G T L +V + A +++ +
Sbjct: 274 ACPYHNGTTVLPDRVVWL---------------------DFVPAAADPSKQEVLQLLQEK 312
Query: 609 -FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFA 659
+V + G + L + V +++ + + +
Sbjct: 313 LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA-PSAPVRTRSRSRARSSAVS 363
Score = 283 bits (727), Expect = 3e-87
Identities = 64/424 (15%), Positives = 140/424 (33%), Gaps = 68/424 (16%)
Query: 469 GNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLH 528
G +M ++ ++ +D I+ A + + L++ G ++ + T LH
Sbjct: 1 GPGSMTDF--PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALH 58
Query: 529 VACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS 588
+AC+F ++ +L S G G P+H A++ N+ ++ L+ + +
Sbjct: 59 LACKFGCVDTAKYLASV-GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE----RGQM 113
Query: 589 PLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGC--LEAVKFLLNTKNIDVN 646
P L ++ ++++ G+T LH V G LE +K L+
Sbjct: 114 PESLLNECDEREVNEI-----GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ-LGASPT 167
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVK 706
K K T L A + + ++++++ +
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKS--------------------------- 200
Query: 707 YGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGN 766
++ N+ + LH+A D+A V E D+ + + + L +
Sbjct: 201 -SLRLDYANK--QGNSHLHWAILIN-WEDVAMRFV-EMGIDVNMEDNEHTVPLYLSVRAA 255
Query: 767 NLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTAL 826
+ L K LL+ I +N T L +
Sbjct: 256 MVLLTKELLQKTDVFLIQACPY---------------------HNGTTVLPDRVVWLDFV 294
Query: 827 HTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATK 886
AA ++ ++++LL + ++ G + + L + + ++
Sbjct: 295 PAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR 354
Query: 887 YRMT 890
R
Sbjct: 355 SRAR 358
Score = 260 bits (667), Expect = 1e-78
Identities = 55/374 (14%), Positives = 124/374 (33%), Gaps = 55/374 (14%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
+ + A ++ +TD + L++ GV + ++ T LH A ++
Sbjct: 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNR-----------FGCTALHLACKFGCVDT 68
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
K L G + +H+A + D+V L + E+ G P +
Sbjct: 69 AKYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVALVEGAKER--------GQMPESL 117
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIA--QNCLEVFNYLVNHGCDLSVP-E 390
E+ + + + G T L + LE+ LV G + +
Sbjct: 118 LNECDEREVNE------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171
Query: 391 GERTALHMASQFGNLEMVNYLLKH------ININHQDKDGWTPLTC-SIKGQASLEVFHS 443
+ T L A +F N E ++ ++ + +++ +K G + L + +V
Sbjct: 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW--EDVAMR 229
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH--------------IDINSENDL 489
+E G D+ + + T L+L+ + + L++ + + +
Sbjct: 230 FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGV 548
+ A + E+ LL + +V + + + A+ + L+ V
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349
Query: 549 NLQDNKGCTPLHCA 562
+ +
Sbjct: 350 RTRSRSRARSSAVS 363
Score = 121 bits (306), Expect = 6e-30
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 27/169 (15%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L WA+ D+A V+ G+ +N+ D E PL+ ++ + + L
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDN-----------EHTVPLYLSVRAAMVLL 259
Query: 274 VKLLLEKGANPLAIEKSRN------------RTALHVAAIVESVDIVKLLFDYGAEKSVN 321
K LL+K L + + AA ++++LL + E V
Sbjct: 260 TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE--VV 317
Query: 322 VQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQ 370
G ++ + ++ L A + + + A+++
Sbjct: 318 RSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSS--AVSK 364
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 279 bits (716), Expect = 8e-86
Identities = 88/376 (23%), Positives = 152/376 (40%), Gaps = 36/376 (9%)
Query: 229 IAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIE 288
A L D L + + D L +A ++ +L+ LL N A +
Sbjct: 6 SALDLADPSAKAVLTGE----------YKKDELLEAARSGNEEKLMALLTPLNVNCHASD 55
Query: 289 KSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLD 348
R T LH+AA V IV+LL +GA+ V+ ++ GL PLH AC E+ ++LL
Sbjct: 56 G-RKSTPLHLAAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLK 112
Query: 349 KGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEM 407
GA +N+ + TPL A ++N +EV + L++HG D ++ ++A+ MA E
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172
Query: 408 VNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLAC- 466
+ Y G + L + + L + + TALH A
Sbjct: 173 LTYEF----------KGHSLLQAAREAD--LAKVKKTLALEIINFKQPQSHETALHCAVA 220
Query: 467 --YFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN 523
+ + L++ ++N +N TP++ A + H ++ +L K GA +
Sbjct: 221 SLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLG 280
Query: 524 FTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADIT 582
T LH A ++ LLS+ ++ +G T E +++ + +
Sbjct: 281 QTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMR 335
Query: 583 MYKNDSPLHLACATGN 598
D L A G+
Sbjct: 336 TSDVDYRLLEASKAGD 351
Score = 277 bits (710), Expect = 7e-85
Identities = 78/401 (19%), Positives = 132/401 (32%), Gaps = 63/401 (15%)
Query: 341 EIVKILLDKGADINSGNDDGCTPLFCAIAQ-NCLEVFNYLVNHGCDLSVPEGE-RTALHM 398
+ L D A + L A N ++ L + +G T LH+
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADIKAKLM 456
A+ + + +V LL+H +++ +DK G PL G EV +++ GA + A +
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG--HYEVTELLLKHGACVNAMDL 122
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
T LH A + + + L+ H D N GK+ + A E
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF----- 177
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIV---GNQLEVFN 572
+ L A E ++ L I Q T LHCA+ + +V
Sbjct: 178 ------KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231
Query: 573 HLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLE 632
L+ A++ N +N TPLHVA +
Sbjct: 232 LLLRKGANV------------------------------NEKNKDFMTPLHVAAERAHND 261
Query: 633 AVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTA 691
++ L +N G TAL A L +LL +D ++ +T
Sbjct: 262 VMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320
Query: 692 LMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGD 732
+ ++ ++ + ++ L AS GD
Sbjct: 321 ------NEAVQQILSESTPMRTSDV----DYRLLEASKAGD 351
Score = 264 bits (678), Expect = 2e-80
Identities = 80/415 (19%), Positives = 139/415 (33%), Gaps = 70/415 (16%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTP-IYFAIKNNHLEIFNLLLKLGAD 515
G +AL L + K + A N ++ LL L +
Sbjct: 3 FGKSALDL------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHL 574
T LH+A + + +V LL H V+ +D G PLH A EV L
Sbjct: 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 575 INSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAV 634
+ A + N + TPLH A S +E
Sbjct: 111 LKHGACV------------------------------NAMDLWQFTPLHEAASKNRVEVC 140
Query: 635 KFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMK 694
LL+ D G +A+ A + + + + + + L A
Sbjct: 141 SLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH----------SLLQAAREA 189
Query: 695 DPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCN--DIARFLVEECNADITLRN 752
D L +K + + + T LH A +A L+ + A++ +N
Sbjct: 190 D--LAKVKKTLALEIINF--KQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKN 244
Query: 753 FNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNA 812
+ T L+ AA + D+++ L K GA + LD + L + G + LL Y +
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Query: 813 DTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKN 867
D ++ + G TA + ++ +L + + D ++ A +A +
Sbjct: 305 DPSIIS-LQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYRL--LEASKAGD 351
Score = 262 bits (673), Expect = 9e-80
Identities = 85/340 (25%), Positives = 133/340 (39%), Gaps = 37/340 (10%)
Query: 228 DIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAI 287
+ LL V + D TPLH A + + +V+LLL+ GA+ A
Sbjct: 39 KLMALLTPLNVNCHASDG-----------RKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 288 EKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILL 347
+K LH A ++ +LL +GA VN ++ TPLH A + +E+ +LL
Sbjct: 88 DKG-GLVPLHNACSYGHYEVTELLLKHGAC--VNAMDLWQFTPLHEAASKNRVEVCSLLL 144
Query: 348 DKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEM 407
GAD N G + + A E Y +L A++ +L
Sbjct: 145 SHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH-----------SLLQAAREADLAK 193
Query: 408 VNYLL-KHININHQDKDGWTPLTC-SIKG-QASLEVFHSIIEAGADIKAKLMDGTTALHL 464
V L I Q + T L C +V ++ GA++ K D T LH+
Sbjct: 194 VKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHV 253
Query: 465 ACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN 523
A + ++ L KH +N+ + LG+T ++ A HL+ LLL G+D ++
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313
Query: 524 FTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCA 562
FT + E V +LS + D L A
Sbjct: 314 FTAAQMGN-----EAVQQILSESTPMRTSDVDY--RLLEA 346
Score = 238 bits (611), Expect = 6e-71
Identities = 78/329 (23%), Positives = 130/329 (39%), Gaps = 33/329 (10%)
Query: 573 HLINSNADITMYKND--SPLHLACATGNMDMITYAMKYF-----DVNIENDIGETPLHVA 625
L + +A + L A +GN + + M + + + TPLH+A
Sbjct: 9 DLADPSAKAVLTGEYKKDELLEAARSGNEEKL---MALLTPLNVNCHASDGRKSTPLHLA 65
Query: 626 VSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT- 684
+ + V+ LL DV+ K K G L AC ++ E+LL+ A VN D
Sbjct: 66 AGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEEC 744
+TPL+ A K+ +++ +L+ +GAD L N C+ + + A + +
Sbjct: 125 FTPLHEAASKN-RVEVCSLLLSHGADPTLVN--CHGKSAVDMAPTPE-LRERLTYE---- 176
Query: 745 NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLY--- 801
F + L AA +L +K L + L +
Sbjct: 177 --------FKGHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK 227
Query: 802 EIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
++ + LL A+ N + K T LH AA D++++L K+ A +NA D G+ A H
Sbjct: 228 QVAELLLRKGANVNEKN-KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR 286
Query: 862 ACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
A A + LL GS+ + T
Sbjct: 287 AALAGHLQTCRLLLSYGSDPSIISLQGFT 315
Score = 179 bits (456), Expect = 7e-50
Identities = 53/262 (20%), Positives = 91/262 (34%), Gaps = 39/262 (14%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
+ L A + + ++ LL+ G LV+ + + A E
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNC-----------HGKSAVDMAPTPELRER 172
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
+ + + L A + + K L Q + T LH
Sbjct: 173 LTYEFK------------GHSLLQAAREADLAKVKKTLALEII---NFKQPQSHETALHC 217
Query: 334 ACRR---KCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE 390
A K ++ ++LL KGA++N N D TPL A + +V L HG ++ +
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277
Query: 391 GE-RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAG 448
+TALH A+ G+L+ LL + + + G+T Q E I+
Sbjct: 278 SLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAA------QMGNEAVQQILSES 331
Query: 449 ADIKAKLMDGTTALHLACYFGN 470
++ D L A G+
Sbjct: 332 TPMRTS--DVDYRLLEASKAGD 351
Score = 156 bits (397), Expect = 6e-42
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 10/215 (4%)
Query: 700 IIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTAL 759
L A LT E Y L A+ G+ + L N + + T L
Sbjct: 6 SALDLADPSAKAVLTGE--YKKDELLEAARSGNEEKLMALLT-PLNVNCHASDGRKSTPL 62
Query: 760 NFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTI 819
+ AA N + +++ LL+ GAD D PL ++C G YE+ + LL++ A N
Sbjct: 63 HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD- 121
Query: 820 KHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGS 879
T LH AA N++++ LLL + AD + +GK A A + + +T+ S
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181
Query: 880 NIEKATKYRMTFESSKVVEKHVAKLRAANIYVDKN 914
++ A + V+K +A N ++
Sbjct: 182 LLQAAREA-----DLAKVKKTLAL-EIINFKQPQS 210
Score = 127 bits (323), Expect = 3e-32
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 3/161 (1%)
Query: 731 GDCNDIARFLVEECNADITLRNFNNRTALNFAA-FGNNLDLLKFLLKAGADPDILDLKDT 789
G+ A L + +A L + L AA GN L+ L + D + +
Sbjct: 1 GEFGKSALDLADP-SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS 59
Query: 790 SPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+PL + IV LL++ AD + + K G LH A + ++ +LLLK+ A +N
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKD-KGGLVPLHNACSYGHYEVTELLLKHGACVN 118
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
A D + H A ++ + LL G++ + +
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS 159
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 265 bits (680), Expect = 2e-80
Identities = 68/428 (15%), Positives = 119/428 (27%), Gaps = 100/428 (23%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
++ +L A+ + + + L P +
Sbjct: 37 SQHSLLEASYDGYIKRQRNELQHY-----------SLYPNPQGYGNGNDFLGDFNHTNLQ 85
Query: 352 DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYL 411
+ L A + + ++ P RT LH + + E L
Sbjct: 86 IPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDL 144
Query: 412 LKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNL 471
+ H I AGAD+ A D T L LA
Sbjct: 145 IVH-------------------------EAKECIAAGADVNAMDCDENTPLMLAVLARRR 179
Query: 472 AMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLL---KLGADVAVKMKSNFTCL 527
+V YL+K D N ++ ++ A N + +L KL D+
Sbjct: 180 RLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI----------- 228
Query: 528 HVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGN---QLEVFNHLINSNADITMY 584
D G T L Q+ L+ A +
Sbjct: 229 ---------------------EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267
Query: 585 KNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNID 644
+ E G T LH A + VK+L+ K +
Sbjct: 268 GAA----------------------RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKM 703
+ + +DG T + A + R+++V L++ A V D T +T A + +I+ +
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN-HHNIVDI 364
Query: 704 LVKYGADV 711
+ +
Sbjct: 365 FDRCRPER 372
Score = 229 bits (587), Expect = 2e-67
Identities = 68/374 (18%), Positives = 130/374 (34%), Gaps = 47/374 (12%)
Query: 168 VSDKKETSKNPQSSDSNSDKALEEELTNIFKKFDLLEHPEYLSHSQGYKALCWALQEKKT 227
+ ++++ KN QS S+ +L E + + K E Y
Sbjct: 21 MENEEKNRKNHQSITSSQ-HSLLEASYDGYIKRQRNELQHY-----SLYPNPQGYGNGND 74
Query: 228 DIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAI 287
+ + E+ LH+ S + + + + N I
Sbjct: 75 FLGDFNHTNLQIPTEPEP-----------ESPIKLHTEAAGS-YAITEPITRESVNI--I 120
Query: 288 EKSRNRTALHVAAIVESVDIVKLLFDYGAEK------SVNVQNVAGLTPLHIACRRKCLE 341
+ NRT LH A S + + L + A++ VN + TPL +A +
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180
Query: 342 IVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNH---GCDLSVP-EGERTALH 397
+V L+ GAD N + L A A + Y++N D+ TAL
Sbjct: 181 LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 240
Query: 398 MASQFGNLEMVN---YLLKH-ININH--------QDKDGWTPLTC-SIKGQASLEVFHS- 443
+ + + V L++ +++ + G T L + ++ +
Sbjct: 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS--NMPIVKYL 298
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
+ E G++ + DG T + LA G + +V YL++ + + + T A NNH
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358
Query: 503 LEIFNLLLKLGADV 516
I ++ + +
Sbjct: 359 HNIVDIFDRCRPER 372
Score = 228 bits (583), Expect = 8e-67
Identities = 70/446 (15%), Positives = 123/446 (27%), Gaps = 110/446 (24%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFN 507
+ +L A Y G + N P N + + +
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQ--------RNELQHYSLYPNPQGYGNGNDFLGD 78
Query: 508 LLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNL-QDNKGCTPLHCAIVGN 566
+ LH S + + VN+ T LH +
Sbjct: 79 FNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRE-SVNIIDPRHNRTVLHWIASNS 136
Query: 567 QLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAV 626
E LI A + DVN + TPL +AV
Sbjct: 137 SAEKSEDLIVHEAKECIAAG----------------------ADVNAMDCDENTPLMLAV 174
Query: 627 SHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYT 686
V +L+ D K +AL A ++ ++ +L +
Sbjct: 175 LARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK---------- 223
Query: 687 PLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRG--DCNDIARFLVE-- 742
D+ + MT L ++ D A+ LVE
Sbjct: 224 --------------------LKGDIEELDR--NGMTALMIVAHNEGRDQVASAKLLVEKG 261
Query: 743 -----ECNADITLRNFNNRTALNFAAFGNNLDLLKFLL-KAGADPDILDLKDTSPLLSSC 796
+ A + RTAL++AA +N+ ++K+L+ + G++ D D
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD----------- 310
Query: 797 RQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGK 856
+ G T + AA +++++ L++ A + A D
Sbjct: 311 -----------------------EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH 347
Query: 857 IAFHSACQAKNWDIVTFLLDAGSNIE 882
A A + +IV E
Sbjct: 348 TARQLAQANNHHNIVDIFDRCRPERE 373
Score = 209 bits (533), Expect = 5e-60
Identities = 64/343 (18%), Positives = 117/343 (34%), Gaps = 35/343 (10%)
Query: 569 EVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSH 628
+ N N ++ + L A G + N P +
Sbjct: 20 PMENEEKNRKNHQSITSSQHSLLEASYDGYIKR--------QRNELQHYSLYPNPQGYGN 71
Query: 629 GCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPL 688
G F + L + E + + ++ T L
Sbjct: 72 GNDFLGDFNHT-NLQIPTEPEPESPIKLHTEAAG-SYAITEPITRESVNIIDPRHNRTVL 129
Query: 689 YTA-------LMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLV 741
+ +D + K + GADVN + TPL A + +L+
Sbjct: 130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC--DENTPLMLAVLAR-RRRLVAYLM 186
Query: 742 EECNADITLRNFNNRTALNFAAFGNNLDLLKFLL---KAGADPDILDLKDTSPLLSSCRQ 798
+ AD T+ N + R+AL+ AA + ++ ++L K D + LD + L+
Sbjct: 187 KA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245
Query: 799 GLYEIVDT---LLEYNADTNLRTI-------KHGSTALHTAAFHNQLDIIKLLLKYN-AD 847
+ V + L+E A + G TALH AA + + I+K L+ ++
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
+ +D+ GK A Q ++V +L+ G+++E T
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT 348
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 257 bits (659), Expect = 1e-78
Identities = 79/279 (28%), Positives = 132/279 (47%), Gaps = 20/279 (7%)
Query: 256 IETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYG 315
+E + L A+ N D++LV+ LLE GAN E+ T LH A + DIV+LL +G
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 316 AEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEV 375
A+ ++ G TP +A ++++K+ L KGAD+N + G T A ++
Sbjct: 63 AD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 376 FNYLVNHGCD-----------LSVPEGERTALHMASQFGNLEMVNYLLKH--ININHQDK 422
+L G + + +G TAL A++ G++E++ LL ++N D
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 423 DGWTPLTCSIKG---QASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVK 479
G L ++ + H +++ GAD+ + G T L LA +L +V L++
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
Query: 480 H--IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
I+IN + GKT + A++ +I LL K GA
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
Score = 243 bits (622), Expect = 2e-73
Identities = 79/374 (21%), Positives = 133/374 (35%), Gaps = 113/374 (30%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
L A + + +++V+ LL+ GA++N ++G
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-------------------------- 38
Query: 387 SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSII 445
T LH A Q ++V LL+H + + K+G TP
Sbjct: 39 -----GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF----------------- 76
Query: 446 EAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLE 504
LA G++ ++ + D+N + G T A ++
Sbjct: 77 -----------------LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 505 IFNLLLKLGADVAVKMKSN----------FTCLHVACEFASIEMVSFLLSHIG--VNLQD 552
L K GA+V ++ K+ T L A E +E++ LL +G VN D
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179
Query: 553 NKGCTPLHCAI----VGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKY 608
N G L A+ + + + L++ AD+
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADV--------------------------- 212
Query: 609 FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLV 668
N+ + G+TPL +AV L V+ LL ++I++N DG TAL A K +
Sbjct: 213 ---NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
Query: 669 EILLEANADVNLGD 682
E+L + A + GD
Sbjct: 270 ELLCKRGASTDCGD 283
Score = 236 bits (606), Expect = 4e-71
Identities = 76/333 (22%), Positives = 127/333 (38%), Gaps = 55/333 (16%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSE-NDLGKTPIYFAIKNNHLEIFNLLLKLGA 514
+ L A ++ +V L++ ++N + + G TP++ A++ + +I LLL+ GA
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 515 DVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNH 573
D ++ K+ T +A S++++ LS VN D G T A V +++
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 574 LINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEA 633
L A++ + + D G T L A G +E
Sbjct: 124 LYKRGANVNLRRKTKE--------------------DQERLRKGGATALMDAAEKGHVEV 163
Query: 634 VKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALM 693
+K LL+ DVN G AL A VE
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE------------------------ 199
Query: 694 KDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNF 753
I +L+ +GADVN+ E TPL A + + + L+E+ + +I +
Sbjct: 200 -----AITHLLLDHGADVNVRGE--RGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDS 251
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDL 786
+ +TAL A + + L K GA D DL
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 214 bits (547), Expect = 5e-63
Identities = 74/339 (21%), Positives = 124/339 (36%), Gaps = 65/339 (19%)
Query: 521 KSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNK-GCTPLHCAIVGNQLEVFNHLINSN 578
+ L A + +++V LL VN Q+ + G TPLH A+ ++ ++ L+
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 579 ADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLL 638
AD + G TP +A G ++ +K L
Sbjct: 63 ADP------------------------------VLRKKNGATPFLLAAIAGSVKLLKLFL 92
Query: 639 NTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSL 698
+ K DVN G TA A ++ ++ L + A+VNL
Sbjct: 93 S-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR---------------- 135
Query: 699 DIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTA 758
K D + T L A+ +G ++ + L++E AD+ + R A
Sbjct: 136 -------KTKEDQERLRK--GGATALMDAAEKG-HVEVLKILLDEMGADVNACDNMGRNA 185
Query: 759 LNFAAFGNNLDLL----KFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLE-YNAD 813
L A ++ + LL GAD ++ + +PL+ + + +V LLE + +
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAED 852
N G TAL A I +LL K A + D
Sbjct: 246 INDTD-SDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 189 bits (484), Expect = 2e-54
Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 24/260 (9%)
Query: 649 TKDGSTALFFACYDKRLDLVEILLEANADVNL--GDGTYTPLYTALMKDPSLDIIKMLVK 706
+ + L A ++ +DLV+ LLE A+VN +G +TPL+ A+ DI+++L++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLR 60
Query: 707 YGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGN 766
+GAD L + TP A+ G + + + + AD+ +F TA AA
Sbjct: 61 HGADPVLRKK--NGATPFLLAAIAG-SVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYG 116
Query: 767 NLDLLKFLLKAGADPDILDLKDTS----------PLLSSCRQGLYEIVDTLL-EYNADTN 815
+ LKFL K GA+ ++ L+ + +G E++ LL E AD N
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 816 LRTIKHGSTALHTAAFHNQ----LDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIV 871
G AL A + I LLL + AD+N + GK A + K+ +V
Sbjct: 177 ACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235
Query: 872 TFLLD-AGSNIEKATKYRMT 890
LL+ I T
Sbjct: 236 QRLLEQEHIEINDTDSDGKT 255
Score = 118 bits (298), Expect = 1e-29
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 752 NFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKD-TSPLLSSCRQGLYEIVDTLLEY 810
+ L A ++DL++ LL+ GA+ + + + +PL ++ + +IV+ LL +
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 811 NADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDI 870
AD LR K+G+T AA + ++KL L AD+N D YG AF A
Sbjct: 62 GADPVLRK-KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 871 VTFLLDAGSNIEKATKYRMTFES 893
+ FL G+N+ K + E
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQER 143
Score = 102 bits (257), Expect = 4e-24
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDK-GVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDI 271
G AL A ++ ++ K+L+D+ G +N D L A+L+SD
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDN-----------MGRNALIHALLSSDD 195
Query: 272 ----ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFD-YGAEKSVNVQNVA 326
+ LLL+ GA+ + +T L +A + + +V+ L + E +N +
Sbjct: 196 SDVEAITHLLLDHGADVNVRGER-GKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSD 252
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGN 357
G T L +A K +I ++L +GA + G+
Sbjct: 253 GKTALLLAVELKLKKIAELLCKRGASTDCGD 283
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 250 bits (641), Expect = 2e-76
Identities = 62/257 (24%), Positives = 102/257 (39%), Gaps = 12/257 (4%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
+ +H AAI ++ L G VN+ ++PLH AC L VKILL GA
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLL 412
+N D TPLF A + N L+ HG + + +H A++ G++E VN L+
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 121
Query: 413 KH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADI-KAKLMDGTTALHLACYFG 469
+ NI+H+ TPL ++E+GAD+ + K + LH
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQ--QRACVKKLLESGADVNQGK--GQDSPLHAVARTA 177
Query: 470 NLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLH 528
+ + L+ D ++N GK P+ + L L L+ ++
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA--QLFLEREGPPSLMQLCRLRIRK 235
Query: 529 VACEFASIEMVSFLLSH 545
++ +L
Sbjct: 236 CFGIQQHHKITKLVLPE 252
Score = 233 bits (598), Expect = 2e-70
Identities = 56/273 (20%), Positives = 104/273 (38%), Gaps = 17/273 (6%)
Query: 325 VAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGC 384
++ +P+H A ++ L+ +G +N D +PL A L L+ HG
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 385 DLSVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVF 441
++ T L A G+ + VN LL+H ++ + D +P+ + +G +E
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRG--HVECV 117
Query: 442 HSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKN 500
+S+I G +I K+ T L+LAC A V L++ D+N +P++ +
Sbjct: 118 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVART 176
Query: 501 NHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPL 559
E+ LL+ GAD K + + + L +L
Sbjct: 177 ASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLEREGPPSLMQLCRLRIR 234
Query: 560 HCAIVGNQLEVFNHLINSNADITMYKNDSPLHL 592
C + ++ ++ + LHL
Sbjct: 235 KCFGIQQHHKITKLVLPEDL------KQFLLHL 261
Score = 222 bits (569), Expect = 2e-66
Identities = 64/292 (21%), Positives = 105/292 (35%), Gaps = 42/292 (14%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG-- 547
+P++ A + H L+ G V + + + LH AC + V LL H G
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQ 61
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMK 607
VN TPL A V + N L+ A +
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-------------------------- 95
Query: 608 YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDL 667
E+D +P+H A G +E V L+ +++HK T L+ AC +++
Sbjct: 96 ----QPESD-LASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRAC 149
Query: 668 VEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYA 727
V+ LLE+ ADVN G G +PL+ S ++ +L+ +GAD N P+
Sbjct: 150 VKKLLESGADVNQGKGQDSPLHAVARTA-SEELACLLMDFGADTQAKNA--EGKRPVELV 206
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA 779
+A+ + E +L + + K +L
Sbjct: 207 PPES---PLAQLFL-EREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 222 bits (568), Expect = 3e-66
Identities = 61/262 (23%), Positives = 111/262 (42%), Gaps = 12/262 (4%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
+P+H A HG +++ L++ + VN T D + L AC L V+ILL+ A
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 678 VNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
VN +TPL+ A + S D + +L+++GA V ++ +P+H A+ RG +
Sbjct: 62 VNGVTADWHTPLFNACVSG-SWDCVNLLLQHGASVQPESD---LASPIHEAARRG-HVEC 116
Query: 737 ARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSC 796
L+ +I + + T L A +K LL++GAD + +D+ PL +
Sbjct: 117 VNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDS-PLHAVA 174
Query: 797 RQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGK 856
R E+ L+++ ADT + G + + + +L L+ +
Sbjct: 175 RTASEELACLLMDFGADTQAKN-AEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRL 231
Query: 857 IAFHSACQAKNWDIVTFLLDAG 878
++ I +L
Sbjct: 232 RIRKCFGIQQHHKITKLVLPED 253
Score = 221 bits (567), Expect = 4e-66
Identities = 53/269 (19%), Positives = 101/269 (37%), Gaps = 21/269 (7%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDK-GVPLNYSRRIIETDTPLHSAILNSDIE 272
+ + A + L+ +G +N++ V +PLH A L +
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV------------SPLHEACLGGHLS 50
Query: 273 LVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLH 332
VK+LL+ GA + T L A + S D V LL +GA V ++ +P+H
Sbjct: 51 CVKILLKHGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQHGAS--VQPES-DLASPIH 106
Query: 333 IACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE 392
A RR +E V L+ G +I+ TPL+ A L+ G D++ +G+
Sbjct: 107 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ 166
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
+ LH ++ + E+ L+ + ++ +G P+ ++F +E
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLF---LEREGPP 223
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKH 480
+ + + ++
Sbjct: 224 SLMQLCRLRIRKCFGIQQHHKITKLVLPE 252
Score = 208 bits (533), Expect = 2e-61
Identities = 61/292 (20%), Positives = 99/292 (33%), Gaps = 40/292 (13%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIE 614
+P+H A + +LI+ VNI
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWA------------------------------VNII 32
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+PLH A G L VK LL VN T D T LF AC D V +LL+
Sbjct: 33 TADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 91
Query: 675 NADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCN 734
A V +P++ A + ++ + L+ YG +++ + TPL+ A
Sbjct: 92 GASVQPESDLASPIHEAARRG-HVECVNSLIAYGGNIDHKIS--HLGTPLYLACENQ-QR 147
Query: 735 DIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLS 794
+ L+E AD+ + + L+ A + +L L+ GAD + + P+
Sbjct: 148 ACVKKLLES-GADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Query: 795 SCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+ + LE +L I KL+L +
Sbjct: 206 VPPES--PLAQLFLEREGPPSLMQ-LCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 148 bits (377), Expect = 3e-40
Identities = 37/170 (21%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 721 MTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
+P+H A+ G R L+ + + + ++ + L+ A G +L +K LLK GA
Sbjct: 4 WSPMHEAAIHG-HQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 781 PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
+ + +PL ++C G ++ V+ LL++ A ++ +H AA ++ +
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE--SDLASPIHEAARRGHVECVNS 119
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
L+ Y +I+ + + + AC+ + V LL++G+++ + K + +
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG-KGQDS 168
Score = 140 bits (355), Expect = 2e-37
Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 19/175 (10%)
Query: 210 SHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNS 269
S + A + + L+ G ++ TPL+ A N
Sbjct: 97 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-----------HLGTPLYLACENQ 145
Query: 270 DIELVKLLLEKGANPLAIEKSRN-RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGL 328
VK LLE GA+ + + + + LH A S ++ LL D+GA +N G
Sbjct: 146 QRACVKKLLESGAD---VNQGKGQDSPLHAVARTASEELACLLMDFGA--DTQAKNAEGK 200
Query: 329 TPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG 383
P+ + + ++ L++ + C Q ++ ++
Sbjct: 201 RPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPED 253
Score = 106 bits (268), Expect = 9e-26
Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 17/139 (12%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIE 272
L A + ++ K L++ G +N D+PLH+ + E
Sbjct: 133 HLGTPLYLACENQQRACVKKLLESGADVNQGKGQ------------DSPLHAVARTASEE 180
Query: 273 LVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLH 332
L LL++ GA+ A + + + + +L + ++ + L
Sbjct: 181 LACLLMDFGADTQAKNAE-GKRPVELVP--PESPLAQLFLEREGP--PSLMQLCRLRIRK 235
Query: 333 IACRRKCLEIVKILLDKGA 351
++ +I K++L +
Sbjct: 236 CFGIQQHHKITKLVLPEDL 254
Score = 98.3 bits (246), Expect = 7e-23
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 34/135 (25%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
++ + ++ AA + L+ L+ G +I+
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT---------------------------- 33
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
+ LH A L +K+LLK+ A +N +AC + +WD V
Sbjct: 34 ------ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 87
Query: 874 LLDAGSNIEKATKYR 888
LL G++++ +
Sbjct: 88 LLQHGASVQPESDLA 102
Score = 79.8 bits (198), Expect = 2e-16
Identities = 15/69 (21%), Positives = 24/69 (34%)
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
+ +H AA H ++ L+ +N H AC + V LL G+ +
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 882 EKATKYRMT 890
T T
Sbjct: 63 NGVTADWHT 71
Score = 70.9 bits (175), Expect = 1e-13
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 14/105 (13%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
L + ++A LL+D G + E P+ S L
Sbjct: 166 QDSPLHAVARTASEELACLLMDFGADTQAKNA-----------EGKRPVELVPPES--PL 212
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
+L LE+ P ++ R I + I KL+ ++
Sbjct: 213 AQLFLEREGPPSLMQLCR-LRIRKCFGIQQHHKITKLVLPEDLKQ 256
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 246 bits (631), Expect = 1e-74
Identities = 68/299 (22%), Positives = 109/299 (36%), Gaps = 23/299 (7%)
Query: 221 ALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEK 280
+ LV +G + +D P LL
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGS------KPAGPRDFPG-----IRLLSN 50
Query: 281 GANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCL 340
+ + + +H AAI ++ L G VN+ ++PLH AC L
Sbjct: 51 PLM---GDAVSDWSPMHEAAIHGHQLSLRNLISQGWA--VNIITADHVSPLHEACLGGHL 105
Query: 341 EIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMAS 400
VKILL GA +N D TPLF A + N L+ HG + + +H A+
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 165
Query: 401 QFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDG 458
+ G++E VN L+ + NI+H+ TPL ++E+GAD+
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ--QRACVKKLLESGADVNQG-KGQ 222
Query: 459 TTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
+ LH + + L+ D ++N GK P+ + L L + GA +
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASL 280
Score = 235 bits (602), Expect = 1e-70
Identities = 65/327 (19%), Positives = 116/327 (35%), Gaps = 52/327 (15%)
Query: 333 IACRRKCLEIVKILLDKGADINSGND-----DGCTPLFCAIAQNCLEVFNYLVNHGCDLS 387
+ L+ +G+ + S + DG P + N L+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-- 58
Query: 388 VPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSII 445
+ + +H A+ G+ + L+ +N D +PL + G L ++
Sbjct: 59 ----DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG--HLSCVKILL 112
Query: 446 EAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLE 504
+ GA + D T L AC G+ VN L++H + E+D +PI+ A + H+E
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVE 171
Query: 505 IFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNL-QDNKGCTPLHCAI 563
N L+ G ++ K+ T L++ACE V LL G ++ Q +PLH +
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVNQGKGQDSPLHAVV 230
Query: 564 VGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLH 623
E+ L++ AD +N G+ P+
Sbjct: 231 RTASEELACLLMDFGADT------------------------------QAKNAEGKRPVE 260
Query: 624 VAVSHGCLEAVKFLLNTKNIDVNHKTK 650
+ L + L + + K K
Sbjct: 261 LVPPESPLAQL--FLEREGASLP-KPK 284
Score = 223 bits (572), Expect = 2e-66
Identities = 60/292 (20%), Positives = 105/292 (35%), Gaps = 20/292 (6%)
Query: 298 VAAIVESVDIVKLLFDYGA---EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADIN 354
+ + L G+ + G P LL +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGD 55
Query: 355 SGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYLLK 413
+P+ A L++ G + + + LH A G+L V LLK
Sbjct: 56 --AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113
Query: 414 H-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNL 471
H +N D TPL + G S + + +++ GA ++ + D + +H A G++
Sbjct: 114 HGAQVNGVTADWHTPLFNACVSG--SWDCVNLLLQHGASVQPES-DLASPIHEAARRGHV 170
Query: 472 AMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVA 530
VN L+ + +I+ + TP+Y A +N LL+ GADV + K + LH
Sbjct: 171 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAV 229
Query: 531 CEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
AS E+ L+ ++ +G P+ + L L A +
Sbjct: 230 VRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASL 280
Score = 222 bits (568), Expect = 7e-66
Identities = 71/354 (20%), Positives = 120/354 (33%), Gaps = 77/354 (21%)
Query: 398 MASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLM 456
M S + + L+ ++ D M
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGG-----------------------------M 31
Query: 457 DGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
DG+ + G + N + + +P++ A + H L+ G V
Sbjct: 32 DGSKPAGPRDFPGIRLLSN------PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85
Query: 517 AVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLEVFNHL 574
+ + + LH AC + V LL H G VN TPL A V + N L
Sbjct: 86 NIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLL 144
Query: 575 INSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAV 634
+ A + E+D +P+H A G +E V
Sbjct: 145 LQHGASV------------------------------QPESD-LASPIHEAARRGHVECV 173
Query: 635 KFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMK 694
L+ +++HK T L+ AC +++ V+ LLE+ ADVN G G +PL+ +
Sbjct: 174 NSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRT 232
Query: 695 DPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADI 748
S ++ +L+ +GAD N P+ +A+ +E A +
Sbjct: 233 A-SEELACLLMDFGADTQAKNA--EGKRPVELVPPES---PLAQLFLEREGASL 280
Score = 221 bits (566), Expect = 1e-65
Identities = 70/364 (19%), Positives = 121/364 (33%), Gaps = 87/364 (23%)
Query: 529 VACEFASIEMVSFLLSH-IGVNLQDNK-----GCTPLHCAIVGNQLEVFNHLINSNADIT 582
+ S L+ + D K G P + + SN
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPR------DFPGIRLLSNP--- 51
Query: 583 MYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKN 642
+ + +P+H A HG +++ L++ +
Sbjct: 52 ----------------------------LMGDAVSDWSPMHEAAIHGHQLSLRNLIS-QG 82
Query: 643 IDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDII 701
VN T D + L AC L V+ILL+ A VN +TPL+ A + S D +
Sbjct: 83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG-SWDCV 141
Query: 702 KMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNF 761
+L+++GA V ++ +P+H A+ RG + L+ +I + + T L
Sbjct: 142 NLLLQHGASVQPESD---LASPIHEAARRG-HVECVNSLIAY-GGNIDHKISHLGTPLYL 196
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
A +K LL++GAD N K
Sbjct: 197 ACENQQRACVKKLLESGADV-----------------------------NQG------KG 221
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
+ LH ++ LL+ + AD A++ GK ++ FL G+++
Sbjct: 222 QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP-ESPLAQLFLEREGASL 280
Query: 882 EKAT 885
K
Sbjct: 281 PKPK 284
Score = 197 bits (504), Expect = 5e-57
Identities = 54/271 (19%), Positives = 106/271 (39%), Gaps = 18/271 (6%)
Query: 624 VAVSHGCLEAVKFLL----NTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN 679
+ SH L+ + ++D DGS + I L +N +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF------PGIRLLSNPLMG 54
Query: 680 LGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARF 739
++P++ A + ++ L+ G VN+ +++PLH A G +
Sbjct: 55 DAVSDWSPMHEAAIHG-HQLSLRNLISQGWAVNIITA--DHVSPLHEACLGG-HLSCVKI 110
Query: 740 LVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQG 799
L++ A + + T L A + D + LL+ GA + P+ + R+G
Sbjct: 111 LLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS-PIHEAARRG 168
Query: 800 LYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAF 859
E V++L+ Y + + + H T L+ A + Q +K LL+ AD+N K
Sbjct: 169 HVECVNSLIAYGGNIDHKI-SHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPL 226
Query: 860 HSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
H+ + + ++ L+D G++ +
Sbjct: 227 HAVVRTASEELACLLMDFGADTQAKNAEGKR 257
Score = 197 bits (503), Expect = 6e-57
Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 19/243 (7%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
+ + A + L+ +G +N++ + +PLH A L +
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITA-----------DHVSPLHEACLGGHLSC 107
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
VK+LL+ GA + T L A + S D V LL +GA SV ++ +P+H
Sbjct: 108 VKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGA--SVQPES-DLASPIHE 163
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
A RR +E V L+ G +I+ TPL+ A L+ G D++ +G+
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD 223
Query: 394 TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI- 451
+ LH + + E+ L+ + ++ +G P+ ++F + GA +
Sbjct: 224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLF--LEREGASLP 281
Query: 452 KAK 454
K K
Sbjct: 282 KPK 284
Score = 108 bits (272), Expect = 4e-26
Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 18/145 (12%)
Query: 211 HSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSD 270
S + A + + L+ G ++ TPL+ A N
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-----------HLGTPLYLACENQQ 202
Query: 271 IELVKLLLEKGANPLAIEKSRN-RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLT 329
VK LLE GA+ + + + + LH S ++ LL D+GA+ +N G
Sbjct: 203 RACVKKLLESGAD---VNQGKGQDSPLHAVVRTASEELACLLMDFGAD--TQAKNAEGKR 257
Query: 330 PLHIACRRKCLEIVKILLDKGADIN 354
P+ + L + L +GA +
Sbjct: 258 PVELVPPESPLAQL-FLEREGASLP 281
Score = 102 bits (258), Expect = 3e-24
Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 8/158 (5%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
+ ++ L+ G+ +D + S G + L N +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMD-GKQGGMDGSKPAGPRDFPGIRLLSNP--LMGDAVS 58
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
+ +H AA H ++ L+ +N H AC + V LL G+ +
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 882 EKATKYRMT--FESSKVVEKHVAKL---RAANIYVDKN 914
T T F + L A++ + +
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 156
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 242 bits (619), Expect = 7e-73
Identities = 62/300 (20%), Positives = 117/300 (39%), Gaps = 17/300 (5%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
++ + K K + A + V L + GA+
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLRLLERGAD-- 65
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+N NV GLT LH AC +++VK L++ GA+IN +++G PL A + L++ YL
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 380 VNHGCDL-SVPEGERTALHMASQFGNLEMVNYLL--KHININHQDKDGWTPLTCSIKGQA 436
++ G + +V T L +A + E++ + + ++I K+ +
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM-------- 177
Query: 437 SLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIY 495
+ + + G TALH+A G ++ L++ D+N ++ G TP++
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLH 237
Query: 496 FAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNK 554
A E +L++ D+ K T VA E + + + + K
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 241 bits (617), Expect = 2e-72
Identities = 60/300 (20%), Positives = 110/300 (36%), Gaps = 16/300 (5%)
Query: 287 IEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKIL 346
+ ++ + + + S ++ + V+ G AC E V L
Sbjct: 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 347 LDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNL 405
L++GADIN N DG T L A + +++ +LV +G +++ P+ E LH A+ G L
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119
Query: 406 EMVNYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALH 463
++ YL+ ++ + +G TPL + E+ + + D A
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEA--MEELLQNEVNRQGV------DIEAARK 171
Query: 464 LACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKS 522
+L I+ G T ++ A + E+ LL++ DV +K
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD 231
Query: 523 NFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
+T LH A + E L+ + + + G T A + N
Sbjct: 232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291
Score = 232 bits (595), Expect = 2e-69
Identities = 68/338 (20%), Positives = 117/338 (34%), Gaps = 43/338 (12%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+ + + + ++ + K DDG L A + E L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRL 59
Query: 380 VNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQA 436
+ G D++ TALH A N++MV +L+++ NIN D +GW PL + G
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG-- 117
Query: 437 SLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYF 496
L++ +I GA + A +G T L +A ++ V ++ +
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD-----IEAARKE 172
Query: 497 AIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKG 555
+ + L + KS T LHVA E++ L+ VN++D G
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
Query: 556 CTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIEN 615
TPLH A + E L+ + D+ N
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDM------------------------------EAVN 262
Query: 616 DIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGS 653
+G+T VA + +N+ + K + S
Sbjct: 263 KVGQTAFDVADEDILGYLEELQKK-QNLLHSEKREKKS 299
Score = 228 bits (583), Expect = 1e-67
Identities = 70/335 (20%), Positives = 108/335 (32%), Gaps = 45/335 (13%)
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLL 412
+ + V V + A G+ E V LL
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60
Query: 413 KH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGN 470
+ +IN+ + DG T L I ++++ ++E GA+I +G LH A G
Sbjct: 61 ERGADINYANVDGLTALHQACIDD--NVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 471 LAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLL-KLGADVAVKMKSNFTCLH 528
L + YL+ + + N G TP+ A + E+ + + G D+
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI-------EAARK 171
Query: 529 VACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND 587
+ +L S I G T LH A EV LI + D+
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV------ 225
Query: 588 SPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNH 647
NI++ G TPLH A G EA + L+ D+
Sbjct: 226 ------------------------NIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEA 260
Query: 648 KTKDGSTALFFACYDKRLDLVEILLEANADVNLGD 682
K G TA A D L E+ + N +
Sbjct: 261 VNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
Score = 220 bits (564), Expect = 3e-65
Identities = 72/333 (21%), Positives = 123/333 (36%), Gaps = 46/333 (13%)
Query: 451 IKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLL 509
+K L + G+ + V + D G + A + E L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRL 59
Query: 510 LKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQL 568
L+ GAD+ T LH AC +++MV FL+ + +N DN+G PLH A L
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119
Query: 569 EVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSH 628
++ +LI+ A + N G+TPL +A
Sbjct: 120 DIAEYLISQGAHV------------------------------GAVNSEGDTPLDIAEEE 149
Query: 629 GCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTP 687
E ++ +N + +D+ K+ + D + L + + + T
Sbjct: 150 AMEELLQNEVNRQGVDIEAARKEEERIM-------LRDARQWLNSGHINDVRHAKSGGTA 202
Query: 688 LYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNAD 747
L+ A K +++K+L++ DVN+ + TPLH A++ G + R LVE D
Sbjct: 203 LHVAAAKG-YTEVLKLLIQARYDVNIKDY--DGWTPLHAAAHWG-KEEACRILVEN-LCD 257
Query: 748 ITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
+ N +TA + A L + K
Sbjct: 258 MEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Score = 220 bits (562), Expect = 8e-65
Identities = 69/342 (20%), Positives = 116/342 (33%), Gaps = 45/342 (13%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMK 607
+ + D K +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT-------------------------- 34
Query: 608 YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDL 667
++ D G A S G E V LL + D+N+ DG TAL AC D +D+
Sbjct: 35 ----KVKFDDG-AVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDM 88
Query: 668 VEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHY 726
V+ L+E A++N D + PL+ A LDI + L+ GA V N TPL
Sbjct: 89 VKFLVENGANINQPDNEGWIPLHAAASCG-YLDIAEYLISQGAHVGAVNS--EGDTPLDI 145
Query: 727 ASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDL 786
A ++ + V DI A D ++L +
Sbjct: 146 AEEEA-MEELLQNEVNRQGVDI-------EAARKEEERIMLRDARQWLNSGHINDVRHAK 197
Query: 787 KDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+ L + +G E++ L++ D N++ G T LH AA + + ++L++
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKD-YDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 847 DINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYR 888
D+ A +K G+ AF A + + + + +
Sbjct: 257 DMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKK 298
Score = 200 bits (511), Expect = 7e-58
Identities = 71/310 (22%), Positives = 117/310 (37%), Gaps = 59/310 (19%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
A T+ L+++G +N + + T LH A ++ ++++VK
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINYANV-----------DGLTALHQACIDDNVDMVK 90
Query: 276 LLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIAC 335
L+E GAN +N + G PLH A
Sbjct: 91 FLVENGAN------------------------------------INQPDNEGWIPLHAAA 114
Query: 336 RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN-HGCDLSVPEGERT 394
L+I + L+ +GA + + N +G TPL A + E+ VN G D+
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI------EA 168
Query: 395 ALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIK 452
A + + +L IN K G T L + KG EV +I+A D+
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG--YTEVLKLLIQARYDVN 226
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
K DG T LH A ++G LV++ D+ + N +G+T A ++ + L K
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK 286
Query: 512 LGADVAVKMK 521
+ K +
Sbjct: 287 QNLLHSEKRE 296
Score = 169 bits (432), Expect = 3e-47
Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 31/247 (12%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A + D+ K LV+ G +N D E PLH+A +++
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDN-----------EGWIPLHAAASCGYLDI 121
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
+ L+ +GA+ A+ T L +A ++++ VN Q V
Sbjct: 122 AEYLISQGAHVGAVNSE-GDTPLDIAEEEAMEELLQNE--------VNRQGVDIEAARKE 172
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGE 392
R + + L + G T L A A+ EV L+ D+++
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIE----A 447
T LH A+ +G E L+++ ++ +K G T A ++ + E
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV-----ADEDILGYLEELQKKQ 287
Query: 448 GADIKAK 454
K
Sbjct: 288 NLLHSEK 294
Score = 146 bits (370), Expect = 6e-39
Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 22/212 (10%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G+ L A DIA+ L+ +G + V+ E DTPL A + EL
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNS-----------EGDTPLDIAEEEAMEEL 154
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
++ + + A + D + L +G T LH+
Sbjct: 155 LQNEVNRQGV-------DIEAARKEEERIMLRDARQWLNSGHIN--DVRHAKSGGTALHV 205
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGE 392
A + E++K+L+ D+N + DG TPL A E LV + CD+ +
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKD 423
+TA +A + + K + + + +
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 115 bits (291), Expect = 2e-28
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Query: 748 ITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTL 807
+ + + + + + L+ + + D + L++C G E V L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRL 59
Query: 808 LEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKN 867
LE AD N G TALH A + +D++K L++ A+IN D G I H+A
Sbjct: 60 LERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 868 WDIVTFLLDAGSNIEKATKYRMT 890
DI +L+ G+++ T
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDT 141
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 232 bits (594), Expect = 2e-69
Identities = 55/333 (16%), Positives = 105/333 (31%), Gaps = 56/333 (16%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRN-RTALHVAAIVESVDIVKLLFDYGAEK 318
+ +K L + + + +A + A +V +V L + GA
Sbjct: 3 DLSRIN--TWKSKQLKSFL-SSKDT--FKADVHGHSASYYAIADNNVRLVCTLLNAGAL- 56
Query: 319 SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNY 378
N+ PLH A + +IVKILL G D + +D G T L+ A+ ++
Sbjct: 57 -KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL 113
Query: 379 LVNHGCDLSVP--EGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQA 436
V L G +T+ + A ++ +V+Y L I +
Sbjct: 114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC--------- 164
Query: 437 SLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTP-I 494
+H+ G++ M+ L+ + N+ N L P I
Sbjct: 165 -------------------------IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDI 199
Query: 495 YFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDN 553
AI N +E+ L K ++ + E+ ++ +
Sbjct: 200 KLAIDNKDIEMLQALFKYDINI------Y-SANLENVLLDDAEIAKMIIEKHVEYKSDSY 252
Query: 554 KGCTPLHCAIVGNQLEVFNHLINSNADITMYKN 586
+ +++ N + + KN
Sbjct: 253 TKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285
Score = 217 bits (555), Expect = 4e-64
Identities = 52/296 (17%), Positives = 113/296 (38%), Gaps = 18/296 (6%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G+ I + + +K L D + G + + AIA N + + L+N G
Sbjct: 1 GMDLSRINTWK--SKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 387 SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSI 444
++ E LH A+ + ++V LL ++ + D G T L G +++
Sbjct: 58 NLLEN-EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG--NMQTVKLF 114
Query: 445 IEAGADIKAKLMDG-TTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHL 503
++ + G T+ + A ++++V+Y + I + + + I+ IKN H+
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHV 174
Query: 504 EIFNLLLKLGADVAVKMKSNFT-CLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCA 562
++ LLL F + +A + IEM+ L + +N+ +
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIY-----SANLEN 228
Query: 563 IVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITY--AMKYFDVNIEND 616
++ + E+ +I + + L + ++I+ ++ VN
Sbjct: 229 VLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKK 284
Score = 198 bits (507), Expect = 2e-57
Identities = 46/342 (13%), Positives = 99/342 (28%), Gaps = 85/342 (24%)
Query: 524 FTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITM 583
+ + + LS D G + + AI N + + L+N+ A
Sbjct: 2 MDLSRINTW--KSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-- 57
Query: 584 YKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNI 643
N+ E PLH A + + VK LL +
Sbjct: 58 ----------------------------NLLE--NEFPLHQAATLEDTKIVKILLF-SGL 86
Query: 644 DVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD--GTYTPLYTALMKDPSLDII 701
D + G+TAL++A + V++ ++ N + G T Y A+M + + I+
Sbjct: 87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN-DVSIV 145
Query: 702 KMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRT-ALN 760
+ ++ +H G D+ L++ N +
Sbjct: 146 SYFLSEIPSTFDLA---ILLSCIHITIKNG-HVDMMILLLDY-MTSTNTNNSLLFIPDIK 200
Query: 761 FAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIK 820
A ++++L+ L K +
Sbjct: 201 LAIDNKDIEMLQALFKYDINIY-------------------------------------- 222
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSA 862
+A + +I K++++ + + ++ +
Sbjct: 223 ---SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKN 261
Score = 192 bits (490), Expect = 4e-55
Identities = 52/303 (17%), Positives = 115/303 (37%), Gaps = 24/303 (7%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G + + +K L+ + D G +A ++A D + LV LL A A
Sbjct: 1 GMDLSRIN--TWKSKQLKSFLS--SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL 56
Query: 678 VNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIA 737
NL + PL+ A + I+K+L+ G D + ++ T L+YA G
Sbjct: 57 KNLLEN-EFPLHQAATLE-DTKIVKILLFSGLDDSQFDD--KGNTALYYAVDSG-NMQTV 111
Query: 738 RFLVEECNADITLRNFNN-RTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSC 796
+ V++ N + +T+ A N++ ++ + L L + + + +
Sbjct: 112 KLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS-CIHITI 169
Query: 797 RQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGK 856
+ G +++ LL+Y TN + A + +++++ L KY+ +I + +
Sbjct: 170 KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN---- 225
Query: 857 IAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT-----FESSKVVEKHVAKLRAANIYV 911
+ +I +++ + + + + +++ K+ V
Sbjct: 226 ---LENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCV 282
Query: 912 DKN 914
KN
Sbjct: 283 KKN 285
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 230 bits (589), Expect = 8e-69
Identities = 59/283 (20%), Positives = 97/283 (34%), Gaps = 24/283 (8%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGA-EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
TALH+A I + + L + A + +++QN G T LH+A V+ L GA
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 352 DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYL 411
+ G T L A L+ + +
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH-----------------PRDASDTY 112
Query: 412 LKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNL 471
L + + P + E + ++A+ DG T LH+A +
Sbjct: 113 LTQ-SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171
Query: 472 AMVNYLVKH-IDINS-ENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHV 529
MV L D+N E G+TP++ A++ + LLLK GAD +M T L
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231
Query: 530 ACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLEV 570
A + + L +H G +P + + +
Sbjct: 232 ALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSDSDN 273
Score = 205 bits (524), Expect = 7e-60
Identities = 56/325 (17%), Positives = 100/325 (30%), Gaps = 53/325 (16%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMK 607
G T LH A++ + L+ +A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE------------------------- 36
Query: 608 YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDL 667
++++ND+G+T LH+A G V+ L V + G TAL AC +
Sbjct: 37 --YLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRAHTC 93
Query: 668 VEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYA 727
+LL+ D + D P
Sbjct: 94 ACVLLQPRPSHPR------------------DASDTYLTQSQDCTPDTS----HAPAAVD 131
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
S N+ + + N++ T L+ A + ++++ L AGAD + +
Sbjct: 132 SQPNPENEEEPRDEDW-RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190
Query: 788 D-TSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
+PL + +++ LL+ AD R G T L +A + +LL + A
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARM-YGGRTPLGSALLRPNPILARLLRAHGA 249
Query: 847 DINAEDKYGKIAFHSACQAKNWDIV 871
+ S+ + D
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSDNR 274
Score = 204 bits (522), Expect = 1e-59
Identities = 58/314 (18%), Positives = 95/314 (30%), Gaps = 59/314 (18%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A+ + L+ +D N + T LH A + +
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ---NDLGQ-----TALHLAAILGEAST 60
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNV-------- 325
V+ L GA L E+ TALH+A V + +L + +
Sbjct: 61 VEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119
Query: 326 ---AGLTPLHIACRRK-CLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN 381
P + + E D + + N DG TPL A+ E+ L +
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179
Query: 382 HGCDLSVPEGE--RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASL 438
G DL+ PE RT LH+A + ++ LLK + + G TP
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP----------- 228
Query: 439 EVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFA 497
L A N + L H + +P +
Sbjct: 229 -----------------------LGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSS 265
Query: 498 IKNNHLEIFNLLLK 511
++ + + +
Sbjct: 266 GSDSDSDNRDEGDE 279
Score = 202 bits (517), Expect = 6e-59
Identities = 51/329 (15%), Positives = 82/329 (24%), Gaps = 59/329 (17%)
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP----EGERTALHMASQFGNLEMV 408
+DG T L A+ ++L+ + +TALH+A+ G V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 409 NYLLKH-ININHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLAC 466
L + ++ G T L + +++ D
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVR--AHTCACVLLQPRPSHPRDASDTYLTQSQ-- 117
Query: 467 YFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTC 526
D + + + N E + + T
Sbjct: 118 ---------------DCTPDTSHAPAAVD-SQPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 527 LHVACEFASIEMVSFLLSH-IGVNLQDNK-GCTPLHCAIVGNQLEVFNHLINSNADITMY 584
LHVA EMV L +N + G TPLH A+ V L+ + AD
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP--- 218
Query: 585 KNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNID 644
G TPL A+ + L
Sbjct: 219 ---------------------------TARMYGGRTPLGSALLRPNPILARLLRA-HGAP 250
Query: 645 VNHKTKDGSTALFFACYDKRLDLVEILLE 673
D + + D D + E
Sbjct: 251 EPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 200 bits (510), Expect = 6e-58
Identities = 58/300 (19%), Positives = 102/300 (34%), Gaps = 28/300 (9%)
Query: 483 INSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD---VAVKMKSNFTCLHVACEFASIEMV 539
+ G T ++ A+ + H + LL A + ++ T LH+A V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 540 SFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGN 598
L + GV + + G T LH A L+ +D+ L +
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS----- 116
Query: 599 MDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFF 658
+ D P V + + + + DG T L
Sbjct: 117 ------------QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164
Query: 659 ACYDKRLDLVEILLEANADVNLGDGTY--TPLYTALMKDPSLDIIKMLVKYGADVNLTNE 716
A K ++V +L +A AD+N + T TPL+ A+ + ++++L+K GAD
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ-AASVLELLLKAGADPTARMY 223
Query: 717 ACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
TPL A R +AR L A + + + + ++ D +
Sbjct: 224 --GGRTPLGSALLRP-NPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 145 bits (369), Expect = 5e-39
Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
Query: 198 KKFDLLEHPEYLSHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIE 257
L + + + A + + + D + L + +
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-----------D 157
Query: 258 TDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAE 317
TPLH A+++ D E+V+LL + GA+ E + RT LH+A ++ +++LL GA+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 318 KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFN 377
+ G TPL A R + ++L GA D +P + + + + +
Sbjct: 218 --PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRD 275
Query: 378 YLVNHG 383
+
Sbjct: 276 EGDEYD 281
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 226 bits (579), Expect = 5e-68
Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 39/266 (14%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+++ +PLH A ++I +L+ GA+I++ ++D TPL A N LE YL
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 380 VNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH--ININHQDKDGWTPLTCSIKGQA 436
+ G + T LH+A++ G+ E+V YLL + +++N QD GWTP
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP--------- 114
Query: 437 SLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIY 495
+ A + ++ +V L+ DIN ++ ++
Sbjct: 115 -------------------------MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH 149
Query: 496 FAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNK 554
+A + ++I +LL D+ + LH+A + V LS V L++ +
Sbjct: 150 WAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE 209
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNAD 580
G TPL CA + +Q+ + + D
Sbjct: 210 GETPLQCASLNSQVWSALQMSKALQD 235
Score = 223 bits (572), Expect = 4e-67
Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 10/236 (4%)
Query: 288 EKSRN-RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKIL 346
+ +N R+ LH AA VDI +L GA ++ + TPL A LE VK L
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 347 LDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG-CDLSVP-EGERTALHMASQFGN 404
+ GA ++ + +G T L A + EV YL+++G D++ +G T + A+++ +
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 405 LEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTAL 462
+++V LL +IN +D + L + G +++ ++ A D+ A + G + L
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSG--CVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 463 HLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVA 517
H+A V + D+ +N G+TP+ A N+ + + K D A
Sbjct: 182 HIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237
Score = 213 bits (546), Expect = 2e-63
Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 37/268 (13%)
Query: 414 HININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLA 472
H+N + ++ +PL + G +++ H +++AGA+I D T L A +L
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAG--HVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLE 58
Query: 473 MVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA-DVAVKMKSNFTCLHVA 530
V YL+K ++ ++ G T ++ A K H E+ LL G DV + +T + A
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 531 CEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSP 589
E+ +++V LLS +N++DN+ LH A +++ L+ + D+
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-------- 170
Query: 590 LHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKT 649
+ N G++PLH+A + V L+ ++ DV K
Sbjct: 171 ----------------------HAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKN 207
Query: 650 KDGSTALFFACYDKRLDLVEILLEANAD 677
K+G T L A + ++ + +A D
Sbjct: 208 KEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 202 bits (517), Expect = 2e-59
Identities = 56/240 (23%), Positives = 111/240 (46%), Gaps = 6/240 (2%)
Query: 642 NIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDI 700
+++ + ++ + L A +D+ +L++A A+++ TPL A + L+
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN-HLEA 59
Query: 701 IKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALN 760
+K L+K GA V+ + T LH A+ +G ++ ++L+ D+ ++ T +
Sbjct: 60 VKYLIKAGALVDPKDA--EGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 761 FAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIK 820
+A ++DL+K LL G+D +I D ++ L + G +I + LL D +
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN-I 175
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
HG + LH AA N+ D + L L ++D+ ++K G+ A + A +
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 200 bits (512), Expect = 9e-59
Identities = 66/302 (21%), Positives = 122/302 (40%), Gaps = 68/302 (22%)
Query: 480 HIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMV 539
H++ E+ ++P++ A + H++I ++L++ GA+
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN------------------------ 36
Query: 540 SFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNM 599
++ TPL A N LE +LI + A +
Sbjct: 37 --------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV------------------ 70
Query: 600 DMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFA 659
+ ++ G T LH+A G E V++LL+ +DVN + G T + +A
Sbjct: 71 ------------DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 660 CYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEAC 718
K +DLV++LL +D+N+ D L+ A +DI ++L+ D++ N
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG-CVDIAEILLAAKCDLHAVNI-- 175
Query: 719 YYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAG 778
+ +PLH A+ D + ++D+TL+N T L A+ + + + KA
Sbjct: 176 HGDSPLHIAAREN-RYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233
Query: 779 AD 780
D
Sbjct: 234 QD 235
Score = 197 bits (504), Expect = 1e-57
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 18/240 (7%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
L A + DI +LV G ++ + + TPL A N+ +E
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-----------DQRTPLMEAAENNHLEA 59
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
VK L++ GA + T LH+AA ++V+ L G VN Q+ G TP+
Sbjct: 60 VKYLIKAGALVDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQ-MDVNCQDDGGWTPMIW 117
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGE 392
A K +++VK+LL KG+DIN +++ L A C+++ L+ CDL
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGAD 450
+ LH+A++ + V L ++ ++K+G TPL C S+ + + +A D
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS--QVWSALQMSKALQD 235
Score = 148 bits (377), Expect = 1e-40
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 6/183 (3%)
Query: 709 ADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNL 768
+ + ++ +PLH A+ G DI LV+ A+I + + RT L AA N+L
Sbjct: 2 MNFKMEHQ--NKRSPLHAAAEAG-HVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHL 57
Query: 769 DLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNA-DTNLRTIKHGSTALH 827
+ +K+L+KAGA D D + ++ L + ++G YE+V LL D N + G T +
Sbjct: 58 EAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD-DGGWTPMI 116
Query: 828 TAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKY 887
A + +D++KLLL +DIN D I H A + DI LL A ++ +
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176
Query: 888 RMT 890
+
Sbjct: 177 GDS 179
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 225 bits (577), Expect = 1e-67
Identities = 54/233 (23%), Positives = 109/233 (46%), Gaps = 9/233 (3%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
+ A + + L + G + V + +T LH A +++VK + KGA
Sbjct: 10 TWDIVKATQYGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67
Query: 353 INS-GNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNY 410
++ G D TPL A Q L + L+ +G D S+ +GE + +H+A+QFG+ +V Y
Sbjct: 68 VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAY 127
Query: 411 LLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAK-LMDGTTALHLACY 467
L+ +++ D++G TPL + + S++ ++ + TALH A
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTH-SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186
Query: 468 FGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVK 519
GN +++ L++ +++++N G++ + A + ++ + N L +
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 217 bits (556), Expect = 9e-65
Identities = 61/274 (22%), Positives = 110/274 (40%), Gaps = 42/274 (15%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+ + + A + E + L++ G D+ + + T L A N +++ Y
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 380 VNHGCDLSVPEGE--RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQA 436
++ G + G+ T LH A++ G+L MV L+K+ + + D +G +
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC--------- 112
Query: 437 SLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIY 495
+HLA FG+ ++V YL+ D++ + G TP+
Sbjct: 113 -------------------------IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147
Query: 496 FAIKNNH-LEIFNLLLKLGADVAVKMKSN-FTCLHVACEFASIEMVSFLLSH-IGVNLQD 552
+A H ++ LLL V + K + T LH A + ++S LL V+ Q+
Sbjct: 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN 207
Query: 553 NKGCTPLHCAIVGNQLEVFNHLINSNADITMYKN 586
KG + L A + + NHL + Y N
Sbjct: 208 IKGESALDLAKQRKNVWMINHLQEARQAKG-YDN 240
Score = 213 bits (545), Expect = 3e-63
Identities = 58/269 (21%), Positives = 104/269 (38%), Gaps = 37/269 (13%)
Query: 416 NINHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMV 474
++ H D + + G E ++EAG D++ + T LH A + +V
Sbjct: 1 HMTHIDDYSTWDIVKATQYG--IYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLV 58
Query: 475 NYLVKH-IDINSE-NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACE 532
Y + ++ DL TP+++A + HL + L+K GAD ++ +C+H+A +
Sbjct: 59 KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 533 FASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIV-GNQLEVFNHLINSNADITMYKNDSPL 590
F +V++L++ V++ D G TPL A + ++ L+ N +
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN-------- 170
Query: 591 HLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTK 650
T LH AV G + LL +V+ +
Sbjct: 171 ----LGDKYH-----------------KNTALHWAVLAGNTTVISLLLE-AGANVDAQNI 208
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVN 679
G +AL A K + ++ L EA
Sbjct: 209 KGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 206 bits (528), Expect = 7e-61
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 11/235 (4%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
+ A E + L+E G + +K N T LH AAI +D+VK GA
Sbjct: 11 WDIVKATQYGIYERCRELVEAGYDVRQPDKE-NVTLLHWAAINNRIDLVKYYISKGAI-- 67
Query: 320 VNVQ-NVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNY 378
V+ TPLH A R+ L +V L+ GAD + + +GC+ + A + Y
Sbjct: 68 VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAY 127
Query: 379 LVNHGCDLSVP-EGERTALHMASQFGN-LEMVNYLLKH-ININHQDK-DGWTPLTC-SIK 433
L+ G D+ + + T L A+ + ++ LL +++N DK T L +
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187
Query: 434 GQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSEND 488
G + V ++EAGA++ A+ + G +AL LA N+ M+N+L + ++
Sbjct: 188 G--NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 206 bits (528), Expect = 7e-61
Identities = 64/276 (23%), Positives = 113/276 (40%), Gaps = 42/276 (15%)
Query: 611 VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEI 670
+ +D + A +G E + L+ DV K+ T L +A + R+DLV+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 671 LLEANADVNLGDGTY--TPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYAS 728
+ A V+ G TPL+ A + L ++ L+KYGAD +L + + +H A+
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQG-HLSMVVQLMKYGADPSLIDG--EGCSCIHLAA 117
Query: 729 YRGDCNDIARFLVEECNADITLRNFNNRTALNFAAF-GNNLDLLKFLLKAGADPDILDLK 787
G I +L+ + D+ + + N T L +AA+ +++D + LL ++ D
Sbjct: 118 QFG-HTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
+TALH A +I LLL+ A+
Sbjct: 176 H---------------------------------KNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEK 883
++A++ G+ A A Q KN ++ L +A
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 206 bits (527), Expect = 8e-61
Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 20/246 (8%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
+ A Q + + LV+ G + DK E T LH A +N+ I+L
Sbjct: 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDK-----------ENVTLLHWAAINNRIDL 57
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
VK + KGA + N T LH A + +V L YGA+ ++ + G + +H+
Sbjct: 58 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD--PSLIDGEGCSCIHL 115
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQ-NCLEVFNYLVNHGCDLSVP--E 390
A + IV L+ KG D++ + +G TPL A + + ++ L+ +++
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175
Query: 391 GERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAG 448
+ TALH A GN +++ LL+ N++ Q+ G + L + ++ + + + EA
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK--NVWMINHLQEAR 233
Query: 449 ADIKAK 454
Sbjct: 234 QAKGYD 239
Score = 191 bits (489), Expect = 1e-55
Identities = 59/302 (19%), Positives = 105/302 (34%), Gaps = 68/302 (22%)
Query: 483 INSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFL 542
+ +D I A + E L++ G DV
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-------------------------- 35
Query: 543 LSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMI 602
D + T LH A + N++++ + I+ A +
Sbjct: 36 ------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIV--------------------- 68
Query: 603 TYAMKYFDVNIE-NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACY 661
+ D+ TPLH A G L V L+ D + +G + + A
Sbjct: 69 ---------DQLGGDLNSTPLHWATRQGHLSMVVQLMK-YGADPSLIDGEGCSCIHLAAQ 118
Query: 662 DKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYY 720
+V L+ DV++ D TPL A + S+D ++L+ + VNL ++ +
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY-HK 177
Query: 721 MTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
T LH+A G + L+E A++ +N +AL+ A N+ ++ L +A
Sbjct: 178 NTALHWAVLAG-NTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235
Query: 781 PD 782
Sbjct: 236 KG 237
Score = 127 bits (321), Expect = 4e-33
Identities = 32/143 (22%), Positives = 59/143 (41%)
Query: 748 ITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTL 807
+T + + + A + + L++AG D D ++ + L + ++V
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 808 LEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKN 867
+ A + ST LH A L ++ L+KY AD + D G H A Q +
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 868 WDIVTFLLDAGSNIEKATKYRMT 890
IV +L+ G +++ + MT
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMT 144
Score = 111 bits (280), Expect = 1e-27
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNS-DI 271
+G + A Q T I L+ KG ++++D TPL A + +
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD-----QNGM------TPLMWAAYRTHSV 156
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
+ +LLL + +K TALH A + + ++ LL + GA V+ QN+ G + L
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN--VDAQNIKGESAL 214
Query: 332 HIACRRKCLEIVKILLDKGADINSGN 357
+A +RK + ++ L + N
Sbjct: 215 DLAKQRKNVWMINHLQEARQAKGYDN 240
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 215 bits (551), Expect = 4e-64
Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 13/233 (5%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEK--SVNVQNVAGLTPLHIACRRKCLEIVKILLDKG 350
T LH+A + ++ V L + + +++ N TPLH+A +V++L+ G
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 351 ADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-----EGERTALHMASQFGNL 405
A + + G T A L++ ++ TALH+A
Sbjct: 70 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 129
Query: 406 EMVNYLLKH-ININHQD-KDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTAL 462
E V LL+ +I+ D K G +PL SL + +++ GA++ A++ G++AL
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENN--SLSMVQLLLQHGANVNAQMYSGSSAL 187
Query: 463 HLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA 514
H A G L +V LV+ D + +N TP+ A ++I A
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 214 bits (548), Expect = 1e-63
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 15/239 (6%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLD----KGADINSGNDDGCTPLFCAIAQNCLEV 375
+ G TPLHIA + L V L++ G +++ N+ TPL A+ V
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 376 FNYLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH-----ININHQDKDGWTPLT 429
LV G +TA H+A + + + LL +++ ++ DG T L
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 430 C-SIKGQASLEVFHSIIEAGADIKAK-LMDGTTALHLACYFGNLAMVNYLVKH-IDINSE 486
E ++E GADI A + G + L A +L+MV L++H ++N++
Sbjct: 122 VAVNTE--CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
G + ++ A L + L++ GAD ++K N T L VA I+++ +
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238
Score = 198 bits (505), Expect = 9e-58
Identities = 60/279 (21%), Positives = 106/279 (37%), Gaps = 48/279 (17%)
Query: 611 VNIENDIGETPLHVAVSHGCLEAVKFLLN---TKNIDVNHKTKDGSTALFFACYDKRLDL 667
++ G+TPLH+AV G L AV L+N +++ T L A +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 668 VEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA----DVNLTNEACYYMT 722
V +L+ A A D T + A S ++ L+ A D+ N +T
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHR-SPTCLRALLDSAAPGTLDLEARNY--DGLT 118
Query: 723 PLHYASYRGDCNDIARFLVEECNADITLRNFNN-RTALNFAAFGNNLDLLKFLLKAGADP 781
LH A C + + L+E ADI + + R+ L A N+L +++ LL+ GA+
Sbjct: 119 ALHVAVNTE-CQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
+ GS+ALH+A+ L +++ L
Sbjct: 177 NAQM----------------------------------YSGSSALHSASGRGLLPLVRTL 202
Query: 842 LKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
++ AD + ++ + A + DI+ ++
Sbjct: 203 VRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 190 bits (485), Expect = 4e-55
Identities = 63/238 (26%), Positives = 98/238 (41%), Gaps = 23/238 (9%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKHI-----DINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
DG T LH+A GNL V+ LV +++ N+L +TP++ A+ + LL+
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-----IGVNLQDNKGCTPLHCAIVGN 566
GA + T H+ACE S + LL + + ++ G T LH A+
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 567 QLEVFNHLINSNADITM--YKN-DSPLHLACATGNMDMITY-----AMKYFDVNIENDIG 618
E L+ ADI K+ SPL A ++ M+ A +VN + G
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA----NVNAQMYSG 183
Query: 619 ETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANA 676
+ LH A G L V+ L+ D + K T L A + +D++ A
Sbjct: 184 SSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 147 bits (373), Expect = 5e-40
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G A A + + + L+D P +D T LH A+ E
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGT-LDLEARNYDGL------TALHVAVNTECQET 131
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V+LLLE+GA+ A++ R+ L A S+ +V+LL +GA VN Q +G + LH
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN--VNAQMYSGSSALHS 189
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG 383
A R L +V+ L+ GAD + N TPL A ++ +++
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
Score = 48.6 bits (117), Expect = 3e-06
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A + + LV G +L + DTPL A I++
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNC-----------HNDTPLMVARSRRVIDI 231
Query: 274 VKLLLEKGAN 283
++ + A+
Sbjct: 232 LRGKATRPAS 241
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 211 bits (541), Expect = 6e-63
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 327 GLTPLHIACRR-KCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCD 385
PLH AC + ++ ++L K + + + DG PL +++ E+ ++L++ +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 386 LSVPEGE----RTALHMASQFGNLEMVNYLLKH---ININHQDKDGWTPL-TCSIKGQAS 437
+++ + T H+A GNLE+V L ++N G T L K
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK--W 119
Query: 438 LEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH--IDINSENDLGKTPIY 495
EV +IE GA ++ K LH A G+L ++ L +N ++ G TP++
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 496 FAIKNNHLEIFNLLL-KLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHI 546
A+ H + LL+ K GA+ + VA + ++ F L+++
Sbjct: 180 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA---LNEQVKKFFLNNV 228
Score = 191 bits (489), Expect = 9e-56
Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 16/227 (7%)
Query: 292 NRTALHVAAIVESVDIV-KLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKG 350
+ LH A + V +LL + + ++ G PLH + + EI LL K
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSL--LLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59
Query: 351 ADINSGN---DDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE---RTALHMASQFGN 404
++N + D G TP A + LEV L + + + T LH+A
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 405 LEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAG-ADIKAKLMDGTTA 461
E+ +L+++ ++ +DK PL + G SL++ + G + + + G T
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVG--SLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 462 LHLACYFGNLAMVNYLV-KH-IDINSENDLGKTPIYFAIKNNHLEIF 506
L A G+ LV K+ + + ++ G A+ + F
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224
Score = 191 bits (489), Expect = 1e-55
Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 19/233 (8%)
Query: 260 TPLHSA-ILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
PLH A + N ++ +LL K + L ++ R LH + ++ +I L
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKMEN- 61
Query: 319 SVNVQNVA---GLTPLHIACRRKCLEIVKILLDK--GADINSGNDDGCTPLFCAIAQNCL 373
VN+ + G TP HIAC LE+VK L D+ D+N + G T L A+ +
Sbjct: 62 -VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 374 EVFNYLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH--ININHQDKDGWTPLTC 430
EV +L+ +G + + + + LH A+ G+L+++ L +N QDK GWTPL
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 431 -SIKGQASLEVFHSIIEA-GADIKAKLMDGTTALHLACYFGNLAMVNYLVKHI 481
+G + ++E GA+ G A +A N + + + ++
Sbjct: 181 ALAEG--HGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNV 228
Score = 183 bits (468), Expect = 5e-53
Identities = 59/293 (20%), Positives = 97/293 (33%), Gaps = 76/293 (25%)
Query: 458 GTTALHLACYFGNLA-MVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
LH AC + L + ++ G+ P+++++ EI + LL +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 516 V---AVKMKSNFTCLHVACEFASIEMVSFLLSHIG---VNLQDNKGCTPLHCAIVGNQLE 569
V S +T H+AC ++E+V L +N N+G T LH A+ E
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 570 VFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHG 629
V LI + A + I++ + PLH A S G
Sbjct: 122 VSQFLIENGASV------------------------------RIKDKFNQIPLHRAASVG 151
Query: 630 CLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLY 689
L+ ++ L VN + K G T LF A + D +L+E
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE---------------- 195
Query: 690 TALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
KYGA+ +L + A + +F +
Sbjct: 196 ----------------KYGAEYDLVDN--KGAKAEDVALN----EQVKKFFLN 226
Score = 180 bits (460), Expect = 8e-52
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 18/219 (8%)
Query: 217 ALCWALQE-KKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVK 275
L A E + + +LL K L D R PLH ++ E+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKD-----QDGR------IPLHWSVSFQAHEITS 53
Query: 276 LLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
LL K N + + T H+A V ++++VK L+D + +N G+T LH+
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG-CDLSVP-EG 391
A +K E+ + L++ GA + + PL A + L++ L G ++ +
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
Query: 392 ERTALHMASQFGNLEMVNYLL-KH-ININHQDKDGWTPL 428
T L A G+ + L+ K+ + D G
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAE 212
Score = 177 bits (451), Expect = 1e-50
Identities = 57/263 (21%), Positives = 93/263 (35%), Gaps = 40/263 (15%)
Query: 617 IGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANA 676
+ PLH A V+ LL++K + K +DG L ++ + ++ LL
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 677 DVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
+VNL D G TP H A G ++
Sbjct: 61 NVNLDDYPD--------------------DSG------------WTPFHIACSVG-NLEV 87
Query: 737 ARFLVE-ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSS 795
+ L + D+ T L+ A ++ +FL++ GA I D + PL +
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 796 CRQGLYEIVDTLLEY-NADTNLRTIKHGSTALHTAAFHNQLDIIKLLL-KYNADINAEDK 853
G ++++ L + N + K G T L A D LL+ KY A+ + D
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQD-KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 854 YGKIAFHSACQAKNWDIVTFLLD 876
G A A + F L+
Sbjct: 207 KGAKAEDVALNE---QVKKFFLN 226
Score = 162 bits (413), Expect = 2e-45
Identities = 56/267 (20%), Positives = 94/267 (35%), Gaps = 57/267 (21%)
Query: 589 PLHLACATGNMDMITYAMKYF-----DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNI 643
PLH AC + + + ++ G PLH +VS E FLL+ K
Sbjct: 5 PLHQACMENEFFKVQ---ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KME 60
Query: 644 DVN---HKTKDGSTALFFACYDKRLDLVEILLE--ANADVNLGDGT-YTPLYTALMKDPS 697
+VN + G T AC L++V+ L + D+N T L+ A+ K
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK-W 119
Query: 698 LDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRT 757
++ + L++ GA V + ++ + PLH A+ G + L + + ++ T
Sbjct: 120 FEVSQFLIENGASVRIKDK--FNQIPLHRAASVG-SLKLIELLCGLGKSAVNWQDKQGWT 176
Query: 758 ALNFAAFGNNLDLLKFLL-KAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNL 816
L A + D L+ K GA+ D++D
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVD------------------------------- 205
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLK 843
G+ A A + K L
Sbjct: 206 ---NKGAKAEDVAL---NEQVKKFFLN 226
Score = 153 bits (389), Expect = 3e-42
Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L W++ + +I L+ K +NL D + TP H A ++E+
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD--DSGW------TPFHIACSVGNLEV 87
Query: 274 VKLLLEKGANPLAIEKSRN-RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLH 332
VK L ++ P + + T LH+A + ++ + L + GA V +++ PLH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS--VRIKDKFNQIPLH 145
Query: 333 IACRRKCLEIVKILLDKG-ADINSGNDDGCTPLFCAIAQNCLEVFNYLV-NHGCDLSVP- 389
A L+++++L G + +N + G TPLF A+A+ + LV +G + +
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 390 EGERTALHMASQFGNLEMVNYLLKHI 415
A +A N ++ + L ++
Sbjct: 206 NKGAKAEDVAL---NEQVKKFFLNNV 228
Score = 146 bits (371), Expect = 6e-40
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 8/176 (4%)
Query: 721 MTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
PLH A + + L + + + ++ + R L+++ ++ FLL +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 781 PDILDLKDTS---PLLSSCRQGLYEIVDTLLE--YNADTNLRTIKHGSTALHTAAFHNQL 835
++ D D S P +C G E+V +L + D N T G T LH A
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKWF 120
Query: 836 DIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN-IEKATKYRMT 890
++ + L++ A + +DK+ +I H A + ++ L G + + K T
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 208 bits (532), Expect = 2e-61
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 22/246 (8%)
Query: 260 TPLHSAILNSD-------------IELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVD 306
TPL A + ++ + +GA+ TALH+AA D
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71
Query: 307 IVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA-DINSGNDDGCTPLF 365
K L + A+ N+Q+ G TPLH A + +IL+ A D+++ DG TPL
Sbjct: 72 AAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKD 423
A + L+N D++ + ++ALH A+ N++ LLK+ N + Q+
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 424 GWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLV-KHI 481
TPL + +G S E +++ A+ +A + +V L +H
Sbjct: 190 EETPLFLAAREG--SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247
Query: 482 DINSEN 487
+ +
Sbjct: 248 HHHHHH 253
Score = 206 bits (527), Expect = 1e-60
Identities = 58/281 (20%), Positives = 101/281 (35%), Gaps = 53/281 (18%)
Query: 320 VNVQNVAGLTPLHIACRRK-------------CLEIVKILLDKGADI-NSGNDDGCTPLF 365
VNV+ G TPL IA ++ + +GA + N + G T L
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 366 CAIAQNCLEVFNYLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH--ININHQDK 422
A + + L+ D ++ RT LH A + L+++ +++ +
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 423 DGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-I 481
DG TP L LA M+ L+
Sbjct: 123 DGTTP----------------------------------LILAARLAVEGMLEDLINSHA 148
Query: 482 DINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSF 541
D+N+ +DLGK+ +++A N+++ +LLK GA+ ++ T L +A S E
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 542 LLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
LL H ++ D+ P A ++ L +
Sbjct: 209 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249
Score = 205 bits (525), Expect = 2e-60
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 21/241 (8%)
Query: 293 RTALHVAAI-------------VESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKC 339
T L +A+ ++ ++ GA N + G T LH+A R
Sbjct: 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSR 69
Query: 340 LEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG-CDLSVPEGE-RTALH 397
+ K LL+ AD N ++ G TPL A++ + VF L+ + DL + T L
Sbjct: 70 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 398 MASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKL 455
+A++ M+ L+ ++N D G + L + +++ +++ GA+ +
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN--NVDAAVVLLKNGANKDMQN 187
Query: 456 MDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA 514
T L LA G+ L+ H + + + + + P A + H +I LL
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247
Query: 515 D 515
Sbjct: 248 H 248
Score = 199 bits (509), Expect = 3e-58
Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 47/281 (16%)
Query: 415 ININHQDKDGWTPLTCSIKGQASLEVFHSI------------IEAGADIK-AKLMDGTTA 461
+++N + DG+TPL + LE +S I GA + G TA
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 462 LHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA-DVAVK 519
LHLA + L++ D N ++++G+TP++ A+ + +F +L++ A D+ +
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 520 MKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSN 578
M T L +A A M+ L++ VN D+ G + LH A N ++ L+ +
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 579 ADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLL 638
A+ +++N+ ETPL +A G E K LL
Sbjct: 181 ANK------------------------------DMQNNREETPLFLAAREGSYETAKVLL 210
Query: 639 NTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN 679
+ + + A D+V +L + +
Sbjct: 211 D-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 193 bits (494), Expect = 3e-56
Identities = 62/274 (22%), Positives = 108/274 (39%), Gaps = 36/274 (13%)
Query: 450 DIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLL 509
D+ + DG T L +A G G + + + +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGG-------------------GLETGNSEEEEDAPAVISDF 42
Query: 510 LKLGADV-AVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQ 567
+ GA + ++ T LH+A ++ + LL N+QDN G TPLH A+ +
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102
Query: 568 LEVFNHLIN---SNADITMYKNDSPLHLACATGNMDMITY-----AMKYFDVNIENDIGE 619
VF LI ++ D M+ +PL LA M+ A DVN +D+G+
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA----DVNAVDDLGK 158
Query: 620 TPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVN 679
+ LH A + ++A LL + + + T LF A + + ++LL+ A+ +
Sbjct: 159 SALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217
Query: 680 LGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVN 712
+ D P A + DI+++L +
Sbjct: 218 ITDHMDRLPRDIAQERM-HHDIVRLLDLEHHHHH 250
Score = 186 bits (476), Expect = 1e-53
Identities = 59/274 (21%), Positives = 99/274 (36%), Gaps = 28/274 (10%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
DVN+ G TPL +A G G + ++
Sbjct: 2 DVNVRGPDGFTPLMIASCSG---------------------GGLETGNSEEEEDAPAVIS 40
Query: 670 ILLEANADV-NLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYA 727
+ A + N D T T L+ A D K L++ AD N+ + TPLH A
Sbjct: 41 DFIYQGASLHNQTDRTGETALHLAARYS-RSDAAKRLLEASADANIQDN--MGRTPLHAA 97
Query: 728 SYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
+ + L+ D+ R + T L AA +L+ L+ + AD + +D
Sbjct: 98 VSAD-AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
S L + + LL+ A+ +++ T L AA + K+LL + A+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQN-NREETPLFLAAREGSYETAKVLLDHFAN 215
Query: 848 INAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
+ D ++ A + + DIV L +
Sbjct: 216 RDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249
Score = 185 bits (473), Expect = 3e-53
Identities = 63/305 (20%), Positives = 119/305 (39%), Gaps = 60/305 (19%)
Query: 481 IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVS 540
+D+N G TP+ A + + E + ++S
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGL--------------------ETGNSEEEEDAPAVIS 40
Query: 541 FLLSHIGVNLQ---DNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATG 597
+ G +L D G T LH A ++ + L+ ++AD
Sbjct: 41 DFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---------------- 83
Query: 598 NMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALF 657
NI++++G TPLH AVS + L+ + D++ + DG+T L
Sbjct: 84 --------------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 658 FACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNE 716
A ++E L+ ++ADVN D + L+ A + ++D +L+K GA+ ++ N
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGANKDMQNN 188
Query: 717 ACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
TPL A+ G + A+ L++ A+ + + +R + A + D+++ L
Sbjct: 189 --REETPLFLAAREG-SYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244
Query: 777 AGADP 781
Sbjct: 245 EHHHH 249
Score = 168 bits (428), Expect = 3e-47
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 15/209 (7%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A + ++D AK L++ N+ D TPLH+A+ +
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDN-----------MGRTPLHAAVSADAQGV 105
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
++L+ A L T L +AA + +++ L + A+ VN + G + LH
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD--VNAVDDLGKSALHW 163
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGE 392
A ++ +LL GA+ + N+ TPLF A + E L++H + + +
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 223
Query: 393 RTALHMASQFGNLEMVNYL-LKHININHQ 420
R +A + + ++V L L+H + +H
Sbjct: 224 RLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Score = 168 bits (427), Expect = 4e-47
Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 27/250 (10%)
Query: 643 IDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIK 702
+DVN + DG T L A G + ++ + +I
Sbjct: 1 MDVNVRGPDGFTPLMIASCS--------------------GGGLETGNSEEEEDAPAVIS 40
Query: 703 MLVKYGADV-NLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNF 761
+ GA + N T+ T LH A+ +D A+ L+E +AD +++ RT L+
Sbjct: 41 DFIYQGASLHNQTDR--TGETALHLAARYS-RSDAAKRLLE-ASADANIQDNMGRTPLHA 96
Query: 762 AAFGNNLDLLKFLLKAGA-DPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIK 820
A + + + L++ A D D T+PL+ + R + +++ L+ +AD N
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-D 155
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
G +ALH AA N +D +LLK A+ + ++ + A + +++ LLD +N
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Query: 881 IEKATKYRMT 890
+
Sbjct: 216 RDITDHMDRL 225
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 203 bits (520), Expect = 4e-60
Identities = 57/249 (22%), Positives = 96/249 (38%), Gaps = 40/249 (16%)
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
++ + +GA+ TALH+AA D K L + A+ N+Q+ G TPL
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPL 62
Query: 332 HIACRRKCLEIVKILLDKGA-DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP- 389
H A + +IL+ A D+++ DG TPL A + L+N D++
Sbjct: 63 HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 390 EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAG 448
+ ++ALH A+ N++ LLK+ N + Q+ TP
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP--------------------- 161
Query: 449 ADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFN 507
L LA G+ L+ H + + + + + P A + H +I
Sbjct: 162 -------------LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 208
Query: 508 LLLKLGADV 516
LL +
Sbjct: 209 LLDEYNLVR 217
Score = 189 bits (484), Expect = 4e-55
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 9/218 (4%)
Query: 371 NCLEVFNYLVNHGCDLS--VPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTP 427
+ V + + G L TALH+A+++ + LL+ + N QD G TP
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 428 LTC-SIKGQASLEVFHSIIEAGA-DIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDIN 484
L + VF +I A D+ A++ DGTT L LA M+ L+ D+N
Sbjct: 62 LHAAVSAD--AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 485 SENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLS 544
+ +DLGK+ +++A N+++ +LLK GA+ ++ T L +A S E LL
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
Query: 545 H-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
H ++ D+ P A ++ L N
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217
Score = 187 bits (478), Expect = 2e-54
Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 35/247 (14%)
Query: 437 SLEVFHSIIEAGADIK-AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPI 494
+ V I GA + G TALHLA + L++ D N ++++G+TP+
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62
Query: 495 YFAIKNNHLEIFNLLLKLGA-DVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQD 552
+ A+ + +F +L++ A D+ +M T L +A A M+ L++ VN D
Sbjct: 63 HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 553 NKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVN 612
+ G + LH A N ++ L+ + A+ +
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANK------------------------------D 152
Query: 613 IENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILL 672
++N+ ETPL +A G E K LL+ + + A D+V +L
Sbjct: 153 MQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLD 211
Query: 673 EANADVN 679
E N +
Sbjct: 212 EYNLVRS 218
Score = 170 bits (434), Expect = 2e-48
Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 40/250 (16%)
Query: 535 SIEMVSFLLSHIGVNL---QDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLH 591
+ ++S + G +L D G T LH A ++ + L+ ++AD
Sbjct: 3 APAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---------- 51
Query: 592 LACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKD 651
NI++++G TPLH AVS + L+ + D++ + D
Sbjct: 52 --------------------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91
Query: 652 GSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGAD 710
G+T L A ++E L+ ++ADVN D + L+ A + ++D +L+K GA+
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGAN 150
Query: 711 VNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDL 770
++ N TPL A+ G + A+ L++ A+ + + +R + A + D+
Sbjct: 151 KDMQNN--REETPLFLAAREG-SYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDI 206
Query: 771 LKFLLKAGAD 780
++ L +
Sbjct: 207 VRLLDEYNLV 216
Score = 167 bits (425), Expect = 3e-47
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL A + ++D AK L++ N+ D N R TPLH+A+ +
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQD-----NMGR------TPLHAAVSADAQGV 73
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
++L+ A L T L +AA + +++ L + A+ VN + G + LH
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD--VNAVDDLGKSALHW 131
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGE 392
A ++ +LL GA+ + N+ TPLF A + E L++H + + +
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 191
Query: 393 RTALHMASQFGNLEMVNYLLKH 414
R +A + + ++V L ++
Sbjct: 192 RLPRDIAQERMHHDIVRLLDEY 213
Score = 167 bits (425), Expect = 3e-47
Identities = 58/259 (22%), Positives = 100/259 (38%), Gaps = 43/259 (16%)
Query: 629 GCLEAVKFLLNTKNIDV-NHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YT 686
+ + + + N + G TAL A R D + LLEA+AD N+ D T
Sbjct: 2 DAPAVISDFIY-QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 687 PLYTALMKDPSLDIIKMLVKYGA-DVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECN 745
PL+ A+ D + + ++L++ A D++ TPL A+ + L+ +
Sbjct: 61 PLHAAVSAD-AQGVFQILIRNRATDLDARMH--DGTTPLILAARLA-VEGMLEDLIN-SH 115
Query: 746 ADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
AD+ + ++AL++AA NN+D LLK GA+ D+ +
Sbjct: 116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN-------------------- 155
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQA 865
T L AA + K+LL + A+ + D ++ A +
Sbjct: 156 --------------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201
Query: 866 KNWDIVTFLLDAGSNIEKA 884
+ DIV L +
Sbjct: 202 MHHDIVRLLDEYNLVRSPQ 220
Score = 154 bits (392), Expect = 1e-42
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 7/196 (3%)
Query: 697 SLDIIKMLVKYGADV-NLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNN 755
+ +I + GA + N T+ T LH A+ +D A+ L+E +AD +++
Sbjct: 3 APAVISDFIYQGASLHNQTDR--TGETALHLAARYS-RSDAAKRLLE-ASADANIQDNMG 58
Query: 756 RTALNFAAFGNNLDLLKFLLKAGA-DPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADT 814
RT L+ A + + + L++ A D D T+PL+ + R + +++ L+ +AD
Sbjct: 59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
Query: 815 NLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
N G +ALH AA N +D +LLK A+ + ++ + A + +++ L
Sbjct: 119 NAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Query: 875 LDAGSNIEKATKYRMT 890
LD +N +
Sbjct: 178 LDHFANRDITDHMDRL 193
Score = 110 bits (279), Expect = 1e-27
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L A + + + L++ +N VD + LH A ++++
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAVDD-----------LGKSALHWAAAVNNVDA 140
Query: 274 VKLLLEKGANPLAIEKSRN-RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLH 332
+LL+ GAN ++ T L +AA S + K+L D+ A ++ + P
Sbjct: 141 AVVLLKNGANK--DMQNNREETPLFLAAREGSYETAKVLLDHFAN--RDITDHMDRLPRD 196
Query: 333 IACRRKCLEIVKILLDKGADIN 354
IA R +IV++L + +
Sbjct: 197 IAQERMHHDIVRLLDEYNLVRS 218
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 194 bits (496), Expect = 1e-56
Identities = 62/266 (23%), Positives = 93/266 (34%), Gaps = 49/266 (18%)
Query: 288 EKSRN-RTALHVAAIVES----VDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEI 342
+ + + + LH+A I E +++++ + A +N QN TPLH+A EI
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPEI 60
Query: 343 VKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG-------ERTA 395
+ LL G D + G TPL A Q CL L + T
Sbjct: 61 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 396 LHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAK- 454
LH+AS G L +V L+ GAD+ A+
Sbjct: 121 LHLASIHGYLGIVELLVSL---------------------------------GADVNAQE 147
Query: 455 LMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLG 513
+G TALHLA N +V+ L+K D+N G +P I L +L
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207
Query: 514 ADVAVKMKSNFTCLHVACEFASIEMV 539
+ + + E E
Sbjct: 208 LENLQMLPESEDEESYDTESEFTEFT 233
Score = 191 bits (487), Expect = 2e-55
Identities = 54/261 (20%), Positives = 98/261 (37%), Gaps = 51/261 (19%)
Query: 259 DTPLHSAILN----SDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDY 314
D+ LH AI++ +E+++ + A + +T LH+A I +I + L
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAEALLGA 67
Query: 315 GAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD------INSGNDDGCTPLFCAI 368
G + +++ G TPLH+AC + CL V +L + + N +G T L A
Sbjct: 68 GCD--PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 369 AQNCLEVFNYLVNHGCDLSVPEGE--RTALHMASQFGNLEMVNYLLKH-ININHQDKDGW 425
L + LV+ G D++ E RTALH+A N ++V+ LLK ++N G+
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 185
Query: 426 TPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDIN 484
+P L + + L + ++
Sbjct: 186 SP----------------------------------YQLTWGRPSTRIQQQLGQLTLENL 211
Query: 485 SENDLGKTPIYFAIKNNHLEI 505
+ + ++ E
Sbjct: 212 QMLPESEDEESYDTESEFTEF 232
Score = 173 bits (441), Expect = 3e-49
Identities = 53/244 (21%), Positives = 84/244 (34%), Gaps = 44/244 (18%)
Query: 452 KAKLMDGTTALHLACYFGN----LAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
+ DG + LHLA + ++ + +N +N+L +TP++ A+ N EI
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-------IGVNLQDNKGCTPL 559
LL G D ++ T LH+ACE + V L + + G T L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 560 HCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNI-ENDIG 618
H A + L + L++ AD+ N E G
Sbjct: 122 HLASIHGYLGIVELLVSLGADV------------------------------NAQEPCNG 151
Query: 619 ETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADV 678
T LH+AV + V LL DVN T G + + + L + +
Sbjct: 152 RTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210
Query: 679 NLGD 682
Sbjct: 211 LQML 214
Score = 161 bits (411), Expect = 4e-45
Identities = 54/264 (20%), Positives = 88/264 (33%), Gaps = 48/264 (18%)
Query: 618 GETPLHVAVSHGC----LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE 673
G++ LH+A+ H +E ++ + +N + T L A + ++ E LL
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 674 ANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLT---NEACYY-MTPLHYAS 728
A D L D TPL+ A + L + +L + +L Y T LH AS
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQG-CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 729 YRGDCNDIARFLVEECNADITLR-NFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLK 787
G I LV AD+ + N RTAL+ A N DL+ LLK GAD + +
Sbjct: 126 IHG-YLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT-- 181
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD 847
G + I + L + +
Sbjct: 182 --------------------------------YQGYSPYQLTWGRPSTRIQQQLGQLTLE 209
Query: 848 INAEDKYGKIAFHSACQAKNWDIV 871
+ +++ +
Sbjct: 210 NLQMLPESEDEESYDTESEFTEFT 233
Score = 159 bits (404), Expect = 3e-44
Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 14/214 (6%)
Query: 682 DGTYTPLYTALM---KDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIAR 738
DG + L+ A++ K ++++I+ + A +N N TPLH A +IA
Sbjct: 7 DG-DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN--LQQTPLHLAVITN-QPEIAE 62
Query: 739 FLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPD---ILDLKDTS---PL 792
L+ D LR+F T L+ A L + L ++ P IL + + L
Sbjct: 63 ALLG-AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 793 LSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAED 852
+ G IV+ L+ AD N + +G TALH A D++ LLLK AD+N
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 181
Query: 853 KYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATK 886
G + + I L +
Sbjct: 182 YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215
Score = 147 bits (374), Expect = 3e-40
Identities = 48/203 (23%), Positives = 75/203 (36%), Gaps = 20/203 (9%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIE 272
L A+ + +IA+ L+ G L D +TPLH A +
Sbjct: 44 LQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-----------RGNTPLHLACEQGCLA 92
Query: 273 LVKLLLEKGANPLAI----EKSRN-RTALHVAAIVESVDIVKLLFDYGAEKSVNVQ-NVA 326
V +L + P + N T LH+A+I + IV+LL GA+ VN Q
Sbjct: 93 SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD--VNAQEPCN 150
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G T LH+A + ++V +LL GAD+N G +P + + L +
Sbjct: 151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210
Query: 387 SVPEGE-RTALHMASQFGNLEMV 408
E ++ E
Sbjct: 211 LQMLPESEDEESYDTESEFTEFT 233
Score = 105 bits (264), Expect = 2e-25
Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 11/144 (7%)
Query: 754 NNRTALNFAAFGNN----LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLE 809
+ + L+ A +++++ + A + + +PL + EI + LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 810 YNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNAD------INAEDKYGKIAFHSAC 863
D LR G+T LH A L + +L + + A + G H A
Sbjct: 67 AGCDPELRD-FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 864 QAKNWDIVTFLLDAGSNIEKATKY 887
IV L+ G+++
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPC 149
Score = 72.2 bits (178), Expect = 4e-14
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 820 KHGSTALHTAAFHNQ----LDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLL 875
+ G + LH A H + +++I+ + A +N ++ + H A +I LL
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 876 DAGSNIEKATKYRMT 890
AG + E T
Sbjct: 66 GAGCDPELRDFRGNT 80
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 187 bits (478), Expect = 1e-54
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 10/196 (5%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
L A ++ + ++L D + V+ + G TPL+IA +EI K L+D+GAD
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQ--VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHG-CDLSVP-EGERTALHMASQFGNLEMVNY 410
IN N +P A AQ E+ Y++ H DL+ AL A++ G+++ V
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 411 LLKH--ININHQDKDGWTPL----TCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHL 464
LL+ +I+ Q+ G+T L Q ++ ++E GAD K G TA+
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
Query: 465 ACYFGNLAMVNYLVKH 480
A G + L ++
Sbjct: 185 ANQKGYTEISKILAQY 200
Score = 179 bits (458), Expect = 6e-52
Identities = 49/234 (20%), Positives = 93/234 (39%), Gaps = 44/234 (18%)
Query: 322 VQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVN 381
++ L A +R ++ +IL D ++ + +G TPL A+ N +E+ L++
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 382 HGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH--ININHQDKDGWTPLTCSIKGQASL 438
G D+++ + A G E++ Y+LKH ++N ++ G
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA----------- 109
Query: 439 EVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH--IDINSENDLGKTPIYF 496
L A G++ V L++ DI+ +ND G T +
Sbjct: 110 -----------------------LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146
Query: 497 AI-----KNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
A+ + +I LL++ GAD ++K S T + A + E+ L +
Sbjct: 147 AVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 162 bits (413), Expect = 8e-46
Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 40/228 (17%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+ L A + L ++ + G TP+ A+ NN +EI L+ GAD
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSH--IGVNLQDNKGCTPLHCAIVGNQLEVFNH 573
+ ++ + + A E+++++L H +N + G L A ++
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 574 LINS-NADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAV-----S 627
L+ DI + +ND G T L AV +
Sbjct: 125 LLEDGREDI------------------------------DFQNDFGYTALIEAVGLREGN 154
Query: 628 HGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
+ VK L+ D + K G TA+ +A ++ +IL + N
Sbjct: 155 QLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 160 bits (407), Expect = 5e-45
Identities = 50/235 (21%), Positives = 91/235 (38%), Gaps = 36/235 (15%)
Query: 613 IENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILL 672
++ L A + + L + V+ +G+T L A ++ +++ + L+
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
Query: 673 EANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA-DVNLTNEACYYMTPLHYASYR 730
+ AD+NL + +P A + +I+ ++K+ D+N N Y L A+ +
Sbjct: 60 DRGADINLQNSISDSPYLYAGAQG-RTEILAYMLKHATPDLNKHNR--YGGNALIPAAEK 116
Query: 731 GDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTS 790
G D + L+E+ DI +N TAL A
Sbjct: 117 G-HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG---------------------- 153
Query: 791 PLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
Q +IV L+E AD +++ G TA+ A +I K+L +YN
Sbjct: 154 ------NQLYQDIVKLLMENGADQSIKD-NSGRTAMDYANQKGYTEISKILAQYN 201
Score = 160 bits (407), Expect = 5e-45
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 40/232 (17%)
Query: 518 VKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLIN 576
+K L A + + ++ L V+ D +G TPL+ A+ N +E+ LI+
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 577 SNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKF 636
ADI N++N I ++P A + G E + +
Sbjct: 61 RGADI------------------------------NLQNSISDSPYLYAGAQGRTEILAY 90
Query: 637 LLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA-NADVNLGDGT-YTPLYTALMK 694
+L D+N + G AL A +D V++LLE D++ + YT L A+
Sbjct: 91 MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL 150
Query: 695 DPS----LDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
DI+K+L++ GAD ++ + T + YA+ +G +I++ L +
Sbjct: 151 REGNQLYQDIVKLLMENGADQSIKDN--SGRTAMDYANQKG-YTEISKILAQ 199
Score = 159 bits (406), Expect = 7e-45
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
L A Q + ++L D ++ VD E +TPL+ A+ N+DIE+
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDT-----------EGNTPLNIAVHNNDIEI 54
Query: 274 VKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
K L+++GA+ I + + A +I+ + + +N N G L
Sbjct: 55 AKALIDRGAD---INLQNSISDSPYLYAGAQGRTEILAYMLKHATPD-LNKHNRYGGNAL 110
Query: 332 HIACRRKCLEIVKILLDKG-ADINSGNDDGCTPLFCAIA-----QNCLEVFNYLVNHGCD 385
A + ++ VK+LL+ G DI+ ND G T L A+ Q ++ L+ +G D
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170
Query: 386 LSVPEGE-RTALHMASQFGNLEMVNYLLKH 414
S+ + RTA+ A+Q G E+ L ++
Sbjct: 171 QSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 135 bits (342), Expect = 2e-36
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 10/179 (5%)
Query: 719 YYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAG 778
L A+ R + L + + + T LN A N++++ K L+ G
Sbjct: 5 EVGALLEAANQRD-TKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 779 ADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNA-DTNLRTIKHGSTALHTAAFHNQLDI 837
AD ++ + SP L + QG EI+ +L++ D N ++G AL AA +D
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN-RYGGNALIPAAEKGHIDN 121
Query: 838 IKLLLKY-NADINAEDKYGKIAFHSACQAKNW-----DIVTFLLDAGSNIEKATKYRMT 890
+KLLL+ DI+ ++ +G A A + DIV L++ G++ T
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180
Score = 129 bits (328), Expect = 2e-34
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIE 272
+G L A+ +IAK L+D+G +NL + +D+P A E
Sbjct: 38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-----------ISDSPYLYAGAQGRTE 86
Query: 273 LVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLH 332
++ +L+ L AL AA +D VKLL + G E ++ QN G T L
Sbjct: 87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-IDFQNDFGYTALI 145
Query: 333 IAC-----RRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNH 382
A + +IVK+L++ GAD + ++ G T + A + E+ L +
Sbjct: 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 116 bits (292), Expect = 1e-29
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 3/143 (2%)
Query: 750 LRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLE 809
++ + L A + + + L D +D + +PL + EI L++
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 810 YNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA-DINAEDKYGKIAFHSACQAKNW 868
AD NL+ + A + +I+ +LK+ D+N ++YG A A + +
Sbjct: 61 RGADINLQN-SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119
Query: 869 DIVTFLLDAGS-NIEKATKYRMT 890
D V LL+ G +I+ + T
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYT 142
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 181 bits (461), Expect = 1e-52
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 4/170 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
+H +++ +K L KG N + R T L A+ ++ V+ L ++GA+
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-- 61
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
++ + L +A +IV +LL++ DIN + +G TPL A+ N ++ L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 380 VNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKHI-NINHQDKDGWTP 427
+ G DL+ + T + +A G ++ + HI + + P
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 171 bits (435), Expect = 4e-49
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGAD-INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCD 385
+H + L+ +K L KG + +N ++ G TPL A A +E +L+ G D
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 386 LSVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFH 442
+ + +AL +AS G ++V LL+ ++IN D +G TPL ++
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN--HVKCVE 119
Query: 443 SIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHI-DINSENDLGKTP 493
+++ GAD+ + G T + LA G + + HI + N + P
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 169 bits (432), Expect = 9e-49
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Query: 391 GERTALHMASQFGNLEMVNYLLKH--ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEA 447
G+ ++H + G L+ + L+ +N D+ G+TPL S G+ +E ++E
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE--IETVRFLLEW 58
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
GAD + +AL LA G +V L++ +DIN + G TP+ +A++ NH++
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCV 118
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG-VNLQDNKGCTP 558
LL GAD+ + S +T + +A ++ + +HI + + P
Sbjct: 119 EALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 155 bits (394), Expect = 1e-43
Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 36/201 (17%)
Query: 458 GTTALHLACYFGNLAMVNYLVKH--IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+ ++H G L + ++ +N ++ G TP+ +A +E LL+ GAD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLEVFNH 573
+ K + L +A ++V LL +N+ D G TPL A+ GN ++
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 574 LINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEA 633
L+ AD + E D G TP+ +AV+ G +
Sbjct: 121 LLARGAD------------------------------LTTEADSGYTPMDLAVALGYRKV 150
Query: 634 VKFLLNTKNIDVNHKTKDGST 654
+ + N + + +
Sbjct: 151 QQVIEN-HILKLFQSNLVPAD 170
Score = 151 bits (383), Expect = 3e-42
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 2/170 (1%)
Query: 721 MTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
+H + +G D + + + + + + T L +A+ ++ ++FLL+ GAD
Sbjct: 3 SLSIHQLAAQG-ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 781 PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
P IL + S L + G +IV LLE + D N+ +G T L A N + ++
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTPLLYAVRGNHVKCVEA 120
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
LL AD+ E G A + + + + ++
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 148 bits (377), Expect = 2e-41
Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 6/175 (3%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
+H + G L+ +K L + VN + G T L +A ++ V LLE AD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 678 VNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
++ + L A DI+ +L++ D+N+ + TPL YA
Sbjct: 62 PHILAKERESALSLASTGG-YTDIVGLLLERDVDINIYDW--NGGTPLLYAVRGN-HVKC 117
Query: 737 ARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSP 791
L+ AD+T + T ++ A + + + +L P
Sbjct: 118 VEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 125 bits (316), Expect = 3e-33
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 755 NRTALNFAAFGNNLDLLKFLLKAGAD-PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
+ +++ A LD LK L+ G + + D + +PL+ + G E V LLE+ AD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
++ K +AL A+ DI+ LLL+ + DIN D G A + + V
Sbjct: 62 PHILA-KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 874 LLDAGSNIEKATKYRMT 890
LL G+++ T
Sbjct: 121 LLARGADLTTEADSGYT 137
Score = 124 bits (315), Expect = 5e-33
Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 18/152 (11%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G+ L WA + + + L++ G +++ K E ++ L A ++
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAK-----------ERESALSLASTGGYTDI 84
Query: 274 VKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
V LLLE+ + I T L A V V+ L GA+ + + +G TP+
Sbjct: 85 VGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD--LTTEADSGYTPM 139
Query: 332 HIACRRKCLEIVKILLDKGADINSGNDDGCTP 363
+A ++ +++ + + N P
Sbjct: 140 DLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 182 bits (465), Expect = 2e-52
Identities = 47/230 (20%), Positives = 78/230 (33%), Gaps = 15/230 (6%)
Query: 274 VKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
++ +L K +P ++R L AA+ +++V+ + + N G+T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND--PSQPNEEGITAL 58
Query: 332 HIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG 391
H A IV L+ GA++NS + G TPL CA + N + LV HG +
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Query: 392 E--RTALHMASQF--GNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSII 445
TA + G + YL ++ + L S + L
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREG-- 176
Query: 446 EAGADIKAKLMDGTTALHLACYFGNLAMV--NYLVKHIDINSENDLGKTP 493
+ + T A G V NY + + K
Sbjct: 177 -ESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHH 225
Score = 144 bits (366), Expect = 3e-39
Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 10/201 (4%)
Query: 444 IIEAGADIKAK---LMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIK 499
++ + ++ L A G L +V VK D + N+ G T ++ AI
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAIC 63
Query: 500 NNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNK-GCT 557
+ I + L+ GA+V +T LH A + L+ H + G T
Sbjct: 64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGAT 123
Query: 558 PLHCAIVG--NQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAMKYFDVNI 613
+ +L + + + + L A ++ + V
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLR 183
Query: 614 ENDIGETPLHVAVSHGCLEAV 634
+ ET A HG V
Sbjct: 184 RDGPEETDWWWAALHGQEGYV 204
Score = 138 bits (349), Expect = 5e-37
Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 6/193 (3%)
Query: 701 IKMLVKYGADVNLTNEACYY-MTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTAL 759
++ +++ A + L A+ G+ ++ + V+E D + N TAL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGEL-EVVQQAVKE-MNDPSQPNEEGITAL 58
Query: 760 NFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTI 819
+ A G N ++ FL+ AGA+ + D +PL + I L+++ A T+
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Query: 820 KHGSTALHTAAFH--NQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDA 877
G+TA + D L + + A + D ++F
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGE 177
Query: 878 GSNIEKATKYRMT 890
+ + T
Sbjct: 178 SVTVLRRDGPEET 190
Score = 137 bits (348), Expect = 6e-37
Identities = 37/223 (16%), Positives = 68/223 (30%), Gaps = 25/223 (11%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
L A + ++ + V + + ++ E T LH+AI ++ +
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-----------EGITALHNAICGANYSI 69
Query: 274 VKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVA-GLTP 330
V L+ GAN + + T LH AA I L +GA + ++ G T
Sbjct: 70 VDFLITAGAN---VNSPDSHGWTPLHCAASCNDTVICMALVQHGAA--IFATTLSDGATA 124
Query: 331 LHIACRRKC--LEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV 388
+ + L D + N L+ + + ++ +
Sbjct: 125 FEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVLR 183
Query: 389 PEGE-RTALHMASQFGNLEMV--NYLLKHININHQDKDGWTPL 428
+G T A+ G V NY + Q
Sbjct: 184 RDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHH 226
Score = 131 bits (331), Expect = 1e-34
Identities = 50/257 (19%), Positives = 75/257 (29%), Gaps = 45/257 (17%)
Query: 610 DVNIENDI---GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLD 666
L A G LE V+ + + D + ++G TAL A
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYS 68
Query: 667 LVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLH 725
+V+ L+ A A+VN D +TPL+ A + I LV++GA + T + T
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLS-DGATAFE 126
Query: 726 YAS-YRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDIL 784
YR D A +L + + L N AL + D L F
Sbjct: 127 KCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAE-FGDELSFREGESVTVLRR 184
Query: 785 DLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDII-KLLLK 843
D T AA H Q + +
Sbjct: 185 D----------------------------------GPEETDWWWAALHGQEGYVPRNYFG 210
Query: 844 YNADINAEDKYGKIAFH 860
+ + K H
Sbjct: 211 LFPRVKPQRSKVKHHHH 227
Score = 131 bits (331), Expect = 1e-34
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 14/211 (6%)
Query: 668 VEILLEANADVNLGDGT----YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTP 723
+ +L L A + L++++ VK D + NE +T
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTG-ELEVVQQAVKEMNDPSQPNE--EGITA 57
Query: 724 LHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDI 783
LH A I FL+ A++ + + T L+ AA N+ + L++ GA
Sbjct: 58 LHNAICGA-NYSIVDFLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Query: 784 LDLKD-TSPLL--SSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
L D + R+G + L + L AL + D +
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN-SGAVYALWDYSAEF-GDELSF 173
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIV 871
+ + D + + A V
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYV 204
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 177 bits (450), Expect = 1e-50
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 6/225 (2%)
Query: 324 NVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG 383
V+ + ++A K E+ + +L + + D T L A + E+ +L+ G
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 384 CDLSVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVF 441
++ + + LH+A+ G E+V LL ++N +++G TPL + + E+
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS-KNRHEIA 122
Query: 442 HSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKN 500
++E GA+ AK TA+H A GNL MV+ L+ + N ++ G TP++ A
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 501 NHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
+E L+ GA + ++ K T L VA + ++ L+
Sbjct: 183 ERVEEAKFLVTQGASIYIENKEEKTPLQVAKG--GLGLILKRLAE 225
Score = 176 bits (449), Expect = 2e-50
Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 8/228 (3%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
N ++A + ++ + + + + T LH AC EIV+ LL G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSL--ATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 352 DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNY 410
+N +D G +PL A + E+ L+ G ++ T LH A+ E+
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 411 LLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFG 469
LL+ N + +D T + + + +L++ H ++ A + +G T LHLAC
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAA-KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 470 NLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADV 516
+ +LV I EN KTP+ A L + L G +
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEA 229
Score = 165 bits (419), Expect = 2e-46
Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 9/233 (3%)
Query: 356 GNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYLLKH 414
G A + E+ ++ + RTALH A G+ E+V +LL+
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 415 -ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLA 472
+ +N +D GW+PL + G E+ +++ GA + A +G T LH A
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAG--XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 473 MVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVAC 531
+ L++ + ++++ T ++ A +L++ ++LL A ++ T LH+AC
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180
Query: 532 EFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITM 583
+ +E FL++ + +++ + TPL A L + + + +M
Sbjct: 181 DEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEASM 231
Score = 161 bits (409), Expect = 4e-45
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 9/229 (3%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGV 548
A E+ +L + + + T LH AC E+V FLL + V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAM 606
N +D+ G +PLH A E+ L+ A + + +PLH A + ++ +
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 607 KY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRL 665
+ + + ++ T +H A + G L+ V LL N + +G+T L AC ++R+
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTPLHLACDEERV 185
Query: 666 DLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNL 713
+ + L+ A + + + TPL A L +I + G + ++
Sbjct: 186 EEAKFLVTQGASIYIENKEEKTPLQVA---KGGLGLILKRLAEGEEASM 231
Score = 152 bits (385), Expect = 6e-42
Identities = 64/264 (24%), Positives = 103/264 (39%), Gaps = 41/264 (15%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
++A S E + +L +D TAL +AC ++VE LL+
Sbjct: 7 NIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 678 VNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIA 737
VN D G +PLH A+ G ++I
Sbjct: 66 VNDKD-----------------------DAG------------WSPLHIAASAG-XDEIV 89
Query: 738 RFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCR 797
+ L+ + A + N N T L++AA N ++ LL+ GA+PD D D + + +
Sbjct: 90 KALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 798 QGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKI 857
+G ++V LL Y A TN++ G+T LH A +++ K L+ A I E+K K
Sbjct: 149 KGNLKMVHILLFYKASTNIQD-TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Query: 858 AFHSACQAKNWDIVTFLLDAGSNI 881
A ++ L G
Sbjct: 208 PLQVAKGGL--GLILKRLAEGEEA 229
Score = 146 bits (369), Expect = 9e-40
Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 19/240 (7%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
A K ++ + ++ D+ ++ T LH A E+
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQ-----------DSRTALHWACSAGHTEI 55
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V+ LL+ G + + + LH+AA +IVK L GA VN N G TPLH
Sbjct: 56 VEFLLQLGVPVNDKDDA-GWSPLHIAASAGXDEIVKALLVKGAH--VNAVNQNGCTPLHY 112
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE- 392
A + EI +LL+ GA+ ++ + T + A A+ L++ + L+ + ++ + E
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
T LH+A +E +L+ +I ++K+ TPL + + L + + G +
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA---KGGLGLILKRLAEGEEA 229
Score = 140 bits (353), Expect = 1e-37
Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 39/263 (14%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIE 614
+ A G E+ ++ +
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLA------------------------------TRT 36
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+ T LH A S G E V+FLL + VN K G + L A ++V+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 675 NADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
A VN + TPL+ A K+ +I ML++ GA+ + + Y T +H A+ +G
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKN-RHEIAVMLLEGGANPDAKDH--YDATAMHRAAAKG-N 151
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLL 793
+ L+ A +++ T L+ A ++ KFL+ GA I + ++ +PL
Sbjct: 152 LKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210
Query: 794 SSCRQGLYEIVDTLLEYNADTNL 816
+ +G ++ L + ++
Sbjct: 211 VA--KGGLGLILKRLAEGEEASM 231
Score = 136 bits (343), Expect = 3e-36
Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 6/219 (2%)
Query: 686 TPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECN 745
A ++ + ++ + T++ T LH+A G +I FL++
Sbjct: 9 MICNLAYSGK-LDELKERILADKSLATRTDQ--DSRTALHWACSAG-HTEIVEFLLQ-LG 63
Query: 746 ADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
+ ++ + L+ AA +++K LL GA + ++ +PL + + +EI
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQA 865
LLE A+ + + + +TA+H AA L ++ +LL Y A N +D G H AC
Sbjct: 124 MLLEGGANPDAKD-HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 866 KNWDIVTFLLDAGSNIEKATKYRMTFESSKVVEKHVAKL 904
+ + FL+ G++I K T +
Sbjct: 183 ERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILK 221
Score = 108 bits (270), Expect = 1e-26
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 1/139 (0%)
Query: 752 NFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYN 811
+N N A G +L + +L + D + L +C G EIV+ LL+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 812 ADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIV 871
N + G + LH AA +I+K LL A +NA ++ G H A +I
Sbjct: 64 VPVNDKD-DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 872 TFLLDAGSNIEKATKYRMT 890
LL+ G+N + Y T
Sbjct: 123 VMLLEGGANPDAKDHYDAT 141
Score = 82.2 bits (203), Expect = 1e-17
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 212 SQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDI 271
G L +A + + +IA +L++ G + D T +H A ++
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-----------YDATAMHRAAAKGNL 152
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
++V +LL A+ + T LH+A E V+ K L GA + ++N TPL
Sbjct: 153 KMVHILLFYKASTNIQDTE-GNTPLHLACDEERVEEAKFLVTQGAS--IYIENKEEKTPL 209
Query: 332 HIACRRKCLEIVKILLDKGADIN 354
+A ++ L +G + +
Sbjct: 210 QVAKGGL--GLILKRLAEGEEAS 230
Score = 52.6 bits (126), Expect = 2e-07
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 212 SQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDI 271
A+ A + + +L+ N+ D E +TPLH A +
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT-----------EGNTPLHLACDEERV 185
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNV 322
E K L+ +GA+ + IE +T L VA + ++ G E ++
Sbjct: 186 EEAKFLVTQGAS-IYIENKEEKTPLQVAK--GGLGLILKRLAEGEE--ASM 231
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 177 bits (452), Expect = 1e-50
Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 33/245 (13%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G L R + + G + N L + + ++ ++ D
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63
Query: 387 SVPEGE-RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHS 443
S+P E TALH A G+ E+V +L++ +N+N D DGWTPL C + +++V
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN--NVQVCKF 121
Query: 444 IIEAGADIKAK---LMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIK 499
++E+GA + A M G +L + N ++
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP 181
Query: 500 NNHLEIFNLLLKLGADVAVKMKSNF--TCLHVACEFASIEMVSFLLSHIGVNLQDNKGCT 557
N E L +K G + + + + A L D +G
Sbjct: 182 QNDDE---LPMKEGDCMTIIHREDEDEIEWWWA------------------RLNDKEGYV 220
Query: 558 PLHCA 562
P +
Sbjct: 221 PRNLL 225
Score = 173 bits (442), Expect = 3e-49
Identities = 40/226 (17%), Positives = 72/226 (31%), Gaps = 15/226 (6%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
L + + + G L +++ D+V+ + +
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGMR--VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD-- 62
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
++ N G+T LH A EIVK L+ G ++N+ + DG TPL CA + N ++V +L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 380 VNHGCDLSV----PEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIK 433
V G + + G + +L + +K L +
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182
Query: 434 GQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMV--NYL 477
L + I + + A V N L
Sbjct: 183 NDDELPMKEG---DCMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225
Score = 152 bits (387), Expect = 5e-42
Identities = 48/280 (17%), Positives = 79/280 (28%), Gaps = 71/280 (25%)
Query: 421 DKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVK 479
+ G L + I G +K L + G +V ++
Sbjct: 2 EITGQVSLPPGKRTNL--RKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIY 58
Query: 480 H-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEM 538
D + ND G T ++ A+ H EI L++ G +
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN----------------------- 95
Query: 539 VSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGN 598
VN D+ G TPLHCA N ++V L+ S A + A
Sbjct: 96 ---------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF------------AMTY 134
Query: 599 MDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFF 658
DM T + G + +FL + K AL+
Sbjct: 135 SDMQTA---------------ADKCEEMEEGYTQCSQFLYG-VQEKMGIMNKGVIYALWD 178
Query: 659 ACYDKRLDLVEILLEANADVNL---GDGTYTPLYTALMKD 695
E+ ++ + + D + A + D
Sbjct: 179 YEPQNDD---ELPMKEGDCMTIIHREDEDEIEWWWARLND 215
Score = 148 bits (375), Expect = 3e-40
Identities = 42/224 (18%), Positives = 74/224 (33%), Gaps = 17/224 (7%)
Query: 552 DNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDS-PLHLACATGNMDMITYAMKY-F 609
+ G L N + + I + L + G D++ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
D ++ ND G T LH AV G E VKFL+ ++VN DG T L A + + +
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 670 ILLEANADVNLGD----GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLH 725
L+E+ A V T + + + L + + N+ + L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEG-YTQCSQFLYGVQEKMGIMNKGV--IYALW 177
Query: 726 YASYRGDCNDIARFLVEECNADITL--RNFNNRTALNFAAFGNN 767
+ D L + +T+ R + +A +
Sbjct: 178 DYEPQNDDE-----LPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 139 bits (352), Expect = 3e-37
Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 10/202 (4%)
Query: 682 DGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLV 741
G L + + +G V + L +S G+ D+ + ++
Sbjct: 4 TG-QVSLPPGKRTN-LRKTGSERIAHGMRVKFNP---LPLALLLDSSLEGEF-DLVQRII 57
Query: 742 EECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLY 801
E D +L N TAL+ A + +++KFL++ G + + D +PL +
Sbjct: 58 YE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV 116
Query: 802 EIVDTLLEYNADTNLRTIK--HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAF 859
++ L+E A T + + L + +K A
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176
Query: 860 HSACQAKNWDIVTFLLDAGSNI 881
+N D + I
Sbjct: 177 WDYE-PQNDDELPMKEGDCMTI 197
Score = 131 bits (332), Expect = 1e-34
Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 35/220 (15%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
L + E + D+ + ++ + +L + E T LH+A+ E+
Sbjct: 37 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-----------EGITALHNAVCAGHTEI 85
Query: 274 VKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAEK-SVNVQNVAGLTP 330
VK L++ G N + + + T LH AA +V + K L + GA ++ ++
Sbjct: 86 VKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142
Query: 331 LHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE 390
+ + L + N L+ QN E+ + G +
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCM---- 195
Query: 391 GERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTC 430
T +H + + + + +N DK+G+ P
Sbjct: 196 ---TIIHR----EDEDEIEWWWARLN----DKEGYVPRNL 224
Score = 115 bits (291), Expect = 4e-29
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
+ +L N + G L LL S +G +++V ++ D
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLA-LLLDSSLEGEFDLVQRIIYEVDD 62
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
+L G TALH A +I+K L+++ ++NA D G H A N + F
Sbjct: 63 PSLPN-DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 874 LLDAGSNIEKATK 886
L+++G+ + T
Sbjct: 122 LVESGAAVFAMTY 134
Score = 94.6 bits (236), Expect = 8e-22
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 791 PLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINA 850
L R L + + + L ++ + D+++ ++ D +
Sbjct: 8 SLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Query: 851 EDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
+ G A H+A A + +IV FL+ G N+ A T
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105
Score = 70.7 bits (174), Expect = 1e-13
Identities = 6/71 (8%), Positives = 18/71 (25%), Gaps = 1/71 (1%)
Query: 820 KHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGS 879
G +L N + + + + + +D+V ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 880 NIEKATKYRMT 890
+ +T
Sbjct: 62 DPSLPNDEGIT 72
Score = 41.1 bits (97), Expect = 0.001
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIE 272
Q C ++E T ++ L + +++KGV L +D E
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGV-----------IYALWDYEPQNDDE 186
Query: 273 LVKLLLEKGANPLAIEK-SRNRTALHVAAI 301
L +++G I + + A +
Sbjct: 187 ---LPMKEGDCMTIIHREDEDEIEWWWARL 213
Score = 31.4 bits (72), Expect = 1.0
Identities = 3/39 (7%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 852 DKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
+ G+++ + + + G + K +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-KFNPLPLA 39
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 176 bits (449), Expect = 2e-50
Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 37/249 (14%)
Query: 259 DTPLHSAILNSDIELV-KLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAE 317
++PL A +D++ + KLL +G TALH+AA+ ++++ +L + E
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEAAPE 62
Query: 318 ---KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLE 374
+ + + G T LHIA + + +V+ LL +GA +++
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY---------- 112
Query: 375 VFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIK 433
+ L+ +G L A+ G+ E+V L++H +I QD G T L I
Sbjct: 113 RPHNLIYYG---------EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
Query: 434 GQASLEVFHSI----IEAGADIKAKLM------DGTTALHLACYFGNLAMVNYLVKH-ID 482
Q + + + K + G T LA GN+ M +L++
Sbjct: 164 -QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222
Query: 483 INSENDLGK 491
I + +
Sbjct: 223 IAAAHHHHH 231
Score = 166 bits (422), Expect = 9e-47
Identities = 50/255 (19%), Positives = 96/255 (37%), Gaps = 40/255 (15%)
Query: 617 IGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANA 676
I E+PL +A ++A+ LL + +V+ + G TAL A L+ +L+EA
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 677 DVNLGDGT------YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYR 730
++ T T L+ A++ ++++++ L+ GA V+ + H Y
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQ-NVNLVRALLARGASVSARATGSVFHYRPHNLIYY 120
Query: 731 GDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTS 790
G L+FAA + ++++ L++ GAD D +
Sbjct: 121 G------------------------EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Query: 791 PLLSSCRQGLYEIVDT----LLEYNADTNLRTI-----KHGSTALHTAAFHNQLDIIKLL 841
L Q LL Y+ +L+++ G T A + + + L
Sbjct: 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216
Query: 842 LKYNADINAEDKYGK 856
++ I A +
Sbjct: 217 MQKRKHIAAAHHHHH 231
Score = 163 bits (416), Expect = 7e-46
Identities = 55/273 (20%), Positives = 92/273 (33%), Gaps = 70/273 (25%)
Query: 327 GLTPLHIACRRKCLEIV-KILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCD 385
+PL +A + ++ + K+L +G +++ G T L A + LE L+ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 386 LSVPEGE------RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLE 439
L +TALH+A N+ +V LL
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR------------------------- 97
Query: 440 VFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIK 499
GA + A+ V H ++ G+ P+ FA
Sbjct: 98 --------GASVSAR-------------------ATGSVFHYRPHNLIYYGEHPLSFAAC 130
Query: 500 NNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVS----FLLSH-------IGV 548
EI LL++ GAD+ + T LH+ + LLS+
Sbjct: 131 VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLE 190
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
+ +N+G TP A V + +F HL+ I
Sbjct: 191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223
Score = 155 bits (395), Expect = 4e-43
Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 37/242 (15%)
Query: 489 LGKTPIYFAIKNNHLE-IFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-- 545
+ ++P+ A K N ++ + LL G +V + T LH+A + ++E L+
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 546 ----IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDM 601
+ + +G T LH A++ + + L+ A ++ S H
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY--------- 112
Query: 602 ITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACY 661
+ GE PL A G E V+ L+ D+ + G+T L
Sbjct: 113 --------RPHNLIYYGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHILIL 163
Query: 662 DKRLDLV----EILLEANADVNLGDGT-------YTPLYTALMKDPSLDIIKMLVKYGAD 710
+LL + +L TP A ++ ++ + + L++
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG-NIVMFQHLMQKRKH 222
Query: 711 VN 712
+
Sbjct: 223 IA 224
Score = 153 bits (388), Expect = 3e-42
Identities = 50/223 (22%), Positives = 86/223 (38%), Gaps = 38/223 (17%)
Query: 229 IAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGAN---PL 285
++KLL +G ++ +T LH A L ++E +L+E
Sbjct: 19 LSKLLKFEGCEVHQRGA-----------MGETALHIAALYDNLEAAMVLMEAAPELVFEP 67
Query: 286 AIEKSRN-RTALHVAAIVESVDIVKLLFDYGAE-----------KSVNVQNVAGLTPLHI 333
+ +TALH+A I ++V++V+ L GA + G PL
Sbjct: 68 MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF 127
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEV----FNYLVNHGCDLSVP 389
A EIV++L++ GADI + + G T L I Q +N L+++ +
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK 187
Query: 390 EGE-------RTALHMASQFGNLEMVNYLLKH-ININHQDKDG 424
E T +A GN+ M +L++ +I
Sbjct: 188 SLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 110 bits (276), Expect = 4e-27
Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 11/157 (7%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETD--TPLHSAILNSDI 271
G AL A+ + ++ + L+ +G ++ G +Y + PL A
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIV----KLLFDYGAE----KSVNVQ 323
E+V+LL+E GA+ A + T LH+ + + LL Y V
Sbjct: 135 EIVRLLIEHGADIRAQDSL-GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP 193
Query: 324 NVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDG 360
N GLTP +A + + + L+ K I + +
Sbjct: 194 NNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 108 bits (273), Expect = 8e-27
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 43/182 (23%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
+PL A+ D +++ L E ++ R TAL+ AA +NL+ L++A +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
++ G TALH A + +++++ L
Sbjct: 64 VFEP------------------------MTSELY-----EGQTALHIAVINQNVNLVRAL 94
Query: 842 LKYNADINAEDK-------------YGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYR 888
L A ++A YG+ A + +IV L++ G++I
Sbjct: 95 LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
Query: 889 MT 890
T
Sbjct: 155 NT 156
Score = 66.1 bits (162), Expect = 3e-12
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 822 GSTALHTAAFHNQLDII-KLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
+ L AA N + + KLL +++ G+ A H A N + L++A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 881 IEKATK 886
+
Sbjct: 63 LVFEPM 68
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 174 bits (444), Expect = 1e-49
Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 50/280 (17%)
Query: 321 NVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV 380
+ G I + AD+ +
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEY-------------------- 45
Query: 381 NHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTC-SIKGQASLE 439
T A++ + + ++ LL+ +++ D++G T L + G S +
Sbjct: 46 ------------ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLG--SDK 91
Query: 440 VFHSIIEAGADIKAK-LMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFA 497
+ EAGAD+ + + G TALH+A + +V LV+ DI E++ G T + A
Sbjct: 92 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Query: 498 IKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCT 557
+ ++ G + ++ + F E+ + + KG
Sbjct: 152 REILKTTPKGNPMQFGRRIGLE---KVINVLEGQVFEYAEVDE-------IVEKRGKGKD 201
Query: 558 PLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATG 597
+ + + A+ + L A A
Sbjct: 202 VEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEYAVAES 241
Score = 167 bits (425), Expect = 5e-47
Identities = 37/255 (14%), Positives = 87/255 (34%), Gaps = 21/255 (8%)
Query: 415 ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAM 473
I + +G G + AD+ ++ T A +
Sbjct: 6 IIGSRTAGEGAMEYLIEWKDGH--SPSWVPSSYIAADVVSE---YETPWWTAARKADEQA 60
Query: 474 VNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVK-MKSNFTCLHVACE 532
++ L++ D+++ ++ G+T + F + LL + GAD+ + M+ T LH+A
Sbjct: 61 LSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 533 FASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPL 590
+ E+V L+ G + ++D +G T L A + + + I + + +
Sbjct: 121 YVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL-EKVINV 178
Query: 591 HLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTK 650
++ ++ + G+ ++ + + K
Sbjct: 179 LEGQVFEYAEVD-------EIVEKRGKGKDVEYLVRWKDGGDCEWVKGV-HVAEDVA--K 228
Query: 651 DGSTALFFACYDKRL 665
D L +A + +
Sbjct: 229 DYEDGLEYAVAESVI 243
Score = 161 bits (409), Expect = 8e-45
Identities = 49/255 (19%), Positives = 93/255 (36%), Gaps = 31/255 (12%)
Query: 212 SQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDI 271
+G ++ + ++V + +TP +A +D
Sbjct: 13 GEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEY------------ETPWWTAARKADE 58
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNV-AGLTP 330
+ + LLE + A++++ RTAL A + S V+LL + GA+ ++ +++ GLT
Sbjct: 59 QALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGAD--LDHRDMRGGLTA 114
Query: 331 LHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE 390
LH+A E+V+ L++ GADI ++ G T L A + G +
Sbjct: 115 LHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG--L 172
Query: 391 GERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGAD 450
+ + F E+ + K G ++ + + A+
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEK-------RGKGKDVEYL-VRWKDGGDCEWVKGVHVAE 224
Query: 451 IKAKLMDGTTALHLA 465
AK D L A
Sbjct: 225 DVAK--DYEDGLEYA 237
Score = 158 bits (403), Expect = 4e-44
Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 24/254 (9%)
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
+ G + G + DV + T + A + L
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSY-IAADVV---SEYETPWWTAARKADEQALSQL 64
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYR 730
LE + DV+ D T L S +++L + GAD++ + +T LH A+
Sbjct: 65 LE-DRDVDAVDENGRTALLFVAGLG-SDKCVRLLAEAGADLDHRDMR-GGLTALHMAAGY 121
Query: 731 GDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTS 790
++ LVE ADI + + TAL A ++ G + L+
Sbjct: 122 V-RPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGRR---IGLEKVI 176
Query: 791 PLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINA 850
+L E+ + + + G + + + D + + A+ A
Sbjct: 177 NVLEGQVFEYAEVDEIVEKRG---------KGKDVEYLVRWKDGGDCEWVKGVHVAEDVA 227
Query: 851 EDKYGKIAFHSACQ 864
+D + A
Sbjct: 228 KDY--EDGLEYAVA 239
Score = 142 bits (360), Expect = 3e-38
Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 21/243 (8%)
Query: 640 TKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLD 699
I + +G+ D ADV + TP +TA K
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-SEY-ETPWWTAARKA-DEQ 59
Query: 700 IIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNN-RTA 758
+ L++ DV+ +E T L + + G + R L E AD+ R+ TA
Sbjct: 60 ALSQLLE-DRDVDAVDE--NGRTALLFVAGLG-SDKCVRLLAEA-GADLDHRDMRGGLTA 114
Query: 759 LNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
L+ AA ++++ L++ GAD ++ D + + L + +++ L
Sbjct: 115 LHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 174
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
+ + ++ +I + GK + D
Sbjct: 175 V----INVLEGQVFEYAEV--------DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV 222
Query: 879 SNI 881
+
Sbjct: 223 AED 225
Score = 44.5 bits (106), Expect = 8e-05
Identities = 14/98 (14%), Positives = 21/98 (21%), Gaps = 14/98 (14%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSR-------RIIETD----TPL 262
G AL A + KT + G + L L I+E
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVE 203
Query: 263 HSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAA 300
+ + + A L A
Sbjct: 204 YLVRWKDGGDCEWVKGVHVAE---DVAKDYEDGLEYAV 238
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 173 bits (442), Expect = 2e-49
Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 33/238 (13%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G + A L + DI D T + ++ +
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA- 70
Query: 387 SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHS- 443
E LH A++ GNL + L + + +N DK G T L G ++
Sbjct: 71 ---ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG--HKDIVEML 125
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
+ ++ + G TALH A + G +V L+ + N K A
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC 185
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLH 560
+ A + ++ + +D+ H
Sbjct: 186 ASLLKKKQGTDAVRTLSNAEDYL-----------------------DDEDSDLEHHHH 220
Score = 173 bits (440), Expect = 3e-49
Identities = 37/249 (14%), Positives = 73/249 (29%), Gaps = 46/249 (18%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
+ A+ + L + + + I + T ++ +
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKGRTGLIPSNY------ 65
Query: 319 SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNY 378
V Q + PLH A +R L ++ LD +N + G T L
Sbjct: 66 -VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL-------------- 110
Query: 379 LVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKH--ININHQDKDGWTPL-TCSIKGQ 435
+ A G+ ++V L I +N Q+K G T L + KG
Sbjct: 111 ------------------YWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG- 151
Query: 436 ASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPI 494
++ ++ GA + ++ A +A +++ N
Sbjct: 152 -YADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210
Query: 495 YFAIKNNHL 503
+ +H
Sbjct: 211 EDSDLEHHH 219
Score = 164 bits (418), Expect = 3e-46
Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 11/214 (5%)
Query: 354 NSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL-SVPEGERTALHMASQFGNLEMVNYLL 412
G +F A+ + L D+ + + T + G ++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI---- 61
Query: 413 KHININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNL 471
+ Q + PL + +G +L ++ + G+TAL+ AC+ G+
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRG--NLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 472 AMVNYLVKH--IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHV 529
+V L I++N +N LG T ++ A + +I LLL GA ++ +
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179
Query: 530 ACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCA 562
A A ++ L + + +
Sbjct: 180 ATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213
Score = 164 bits (418), Expect = 3e-46
Identities = 33/242 (13%), Positives = 61/242 (25%), Gaps = 40/242 (16%)
Query: 418 NHQDKDGWTPL-TCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
K G + + + DI T G
Sbjct: 6 PKPVKPGQVKVFRALYTFE--PRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG---- 59
Query: 477 LVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASI 536
L+ + + + P++ A K +L L V K+ T L+ AC
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 537 EMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLAC 594
++V L + +N Q+ G T LH A ++ L+ A
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART------------- 166
Query: 595 ATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGST 654
++ N + +A + C +K + +
Sbjct: 167 -----------------DLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAEDYL 208
Query: 655 AL 656
Sbjct: 209 DD 210
Score = 163 bits (414), Expect = 8e-46
Identities = 42/243 (17%), Positives = 71/243 (29%), Gaps = 38/243 (15%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVN 549
G+ ++ A+ + L D+ + T ++ V
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP----SNYVA 67
Query: 550 LQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYF 609
Q PLH A L +++
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVG----------------------------- 98
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
VN + G T L+ A G + V+ L NI++N + K G TAL A + D+V+
Sbjct: 99 -VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ 157
Query: 670 ILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYAS 728
+LL A +L + A ++K A L+N Y +
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAA-CASLLKKKQGTDAVRTLSNAEDY--LDDEDSD 214
Query: 729 YRG 731
Sbjct: 215 LEH 217
Score = 154 bits (392), Expect = 8e-43
Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 10/219 (4%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G+ + A+ L + D+ + T T + R L+ A
Sbjct: 12 GQVKVFRALYTFEPRTPDELYI-EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70
Query: 678 VNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIA 737
+ D PL+ A + +L ++ + VN ++ T L++A + G DI
Sbjct: 71 ES-ID---NPLHEAAKRG-NLSWLRECLDNRVGVNGLDK--AGSTALYWACHGG-HKDIV 122
Query: 738 RFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCR 797
L + N ++ +N TAL+ AA+ D+++ LL GA D+ +++ +
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182
Query: 798 QGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLD 836
++ +A L + +
Sbjct: 183 AACASLLKKKQGTDAVRTLSN-AEDYLDDEDSDLEHHHH 220
Score = 150 bits (382), Expect = 1e-41
Identities = 45/218 (20%), Positives = 78/218 (35%), Gaps = 12/218 (5%)
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEEC 744
++ AL L D+ + T + +G R +
Sbjct: 13 QVKVFRALYTF-EPRTPDELYIEEGDIIYITD--MSDTNWWKGTSKG------RTGLIPS 63
Query: 745 NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIV 804
+ + + L+ AA NL L+ L + LD ++ L +C G +IV
Sbjct: 64 -NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 805 DTLL-EYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSAC 863
+ L + N + N + K G TALH AA+ DI++LLL A + + K+AF A
Sbjct: 123 EMLFTQPNIELNQQN-KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181
Query: 864 QAKNWDIVTFLLDAGSNIEKATKYRMTFESSKVVEKHV 901
A ++ + + + +E H
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 147 bits (374), Expect = 2e-40
Identities = 39/221 (17%), Positives = 71/221 (32%), Gaps = 13/221 (5%)
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKML 704
K G +F A Y + L D+ T + K +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG------RTG 59
Query: 705 VKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAF 764
+ V E PLH A+ RG R ++ + + TAL +A
Sbjct: 60 LIPSNYVAEQAE--SIDNPLHEAAKRG-NLSWLRECLDN-RVGVNGLDKAGSTALYWACH 115
Query: 765 GNNLDLLKFLL-KAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGS 823
G + D+++ L + + + + + L ++ +G +IV LL A T+LR
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN-IEKK 174
Query: 824 TALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQ 864
A A ++K +A + + +
Sbjct: 175 LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
Score = 145 bits (368), Expect = 1e-39
Identities = 40/211 (18%), Positives = 68/211 (32%), Gaps = 22/211 (10%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGV--PLNYSRRIIETD------------ 259
G + AL + L + + + T
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE 71
Query: 260 ---TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFD-YG 315
PLH A ++ ++ L+ ++K+ TAL+ A DIV++LF
Sbjct: 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEMLFTQPN 130
Query: 316 AEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEV 375
E +N QN G T LH A + +IV++LL KGA + N + A C +
Sbjct: 131 IE--LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL 188
Query: 376 FNYLVNHGCDLSVPEGE-RTALHMASQFGNL 405
++ E + +
Sbjct: 189 LKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 103 bits (258), Expect = 7e-25
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 7/138 (5%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
+ + A + L D + + +G ++ +
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
+ LH AA L ++ L +N DK G A + AC + DIV
Sbjct: 71 ------ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM 124
Query: 874 LLD-AGSNIEKATKYRMT 890
L + + K T
Sbjct: 125 LFTQPNIELNQQNKLGDT 142
Score = 60.0 bits (146), Expect = 4e-10
Identities = 12/99 (12%), Positives = 20/99 (20%), Gaps = 28/99 (28%)
Query: 820 KHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSAC---------------Q 864
K G + A + + L DI + Q
Sbjct: 10 KPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 69
Query: 865 AKNW-------------DIVTFLLDAGSNIEKATKYRMT 890
A++ + LD + K T
Sbjct: 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGST 108
Score = 33.8 bits (78), Expect = 0.18
Identities = 7/42 (16%), Positives = 10/42 (23%)
Query: 849 NAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
K G++ A L +I T T
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDT 47
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 170 bits (434), Expect = 4e-49
Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 37/199 (18%)
Query: 326 AGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCD 385
A +H + + + +++ IN +++G TP
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTP---------------------- 39
Query: 386 LSVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHS 443
L A+ G + +V +LL++ + K + L+ KG ++
Sbjct: 40 ----------LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG--YTDIVKM 87
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
+++ G D+ +G T L A + ++ V L++ D E D G + A+ +
Sbjct: 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147
Query: 503 LEIFNLLLKLGADVAVKMK 521
+ ++ + +K
Sbjct: 148 RSVQQVIESHLLKLLQNIK 166
Score = 168 bits (428), Expect = 3e-48
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAE 317
+H ++ + +E+ I + T L AA + +V+ L GA+
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENV---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 318 KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFN 377
+ + L +AC + +IVK+LLD G D+N + +G TPL A+ N ++
Sbjct: 62 --PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Query: 378 YLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKD 423
L+ G D ++ + ++ +A G + + H + + K+
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 156 bits (396), Expect = 6e-44
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 393 RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGAD 450
++H + G + + ++ INH D++G+TPL + G + V +++ GAD
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG--QIAVVEFLLQNGAD 61
Query: 451 IKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLL 509
+ +AL LAC G +V L+ +D+N + G TP+ +A+ NH++ +L
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 510 LKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNL 550
L+ GAD ++ S + + +A + + SH + L
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH-LLKL 161
Score = 155 bits (394), Expect = 9e-44
Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 35/198 (17%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+ ++H G + + ++ IN ++ G TP+ +A + + + LL+ GAD
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLEVFNH 573
+ K + L +AC ++V LL G VN D G TPL A+ GN ++
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 574 LINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEA 633
L+ S AD IE D G + +AV+ G
Sbjct: 121 LLESGADP------------------------------TIETDSGYNSMDLAVALGYRSV 150
Query: 634 VKFLLNTKNIDVNHKTKD 651
+ + + + + K+
Sbjct: 151 QQVIES-HLLKLLQNIKE 167
Score = 152 bits (387), Expect = 8e-43
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 3/166 (1%)
Query: 721 MTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
+H + +G +E I + T L +AA + +++FLL+ GAD
Sbjct: 4 SLSVHQLAAQG-EMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 781 PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
P +L S L +C +G +IV LL+ D N +G T L A N + +K+
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD-WNGGTPLLYAVHGNHVKCVKM 120
Query: 841 LLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATK 886
LL+ AD E G + A + + + + K
Sbjct: 121 LLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 149 bits (378), Expect = 1e-41
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 217 ALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKL 276
++ + + +++ +N D+ E TPL A + I +V+
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDE-----------EGFTPLMWAAAHGQIAVVEF 54
Query: 277 LLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACR 336
LL+ GA+P + K R +AL +A DIVK+L D G + VN + G TPL A
Sbjct: 55 LLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGVD--VNEYDWNGGTPLLYAVH 111
Query: 337 RKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
++ VK+LL+ GAD D G + A+A V + +H L
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Score = 143 bits (363), Expect = 2e-39
Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 40/204 (19%)
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA 709
S ++ + + +E +N D +TPL A + +++ L++ GA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGA 60
Query: 710 DVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLD 769
D L + + L A +G DI + L+ +C D+ ++N T L +A GN++
Sbjct: 61 DPQLLGK--GRESALSLACSKG-YTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVK 116
Query: 770 LLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTA 829
+K LL++GADP I G ++ A
Sbjct: 117 CVKMLLESGADPTIET----------------------------------DSGYNSMDLA 142
Query: 830 AFHNQLDIIKLLLKYNADINAEDK 853
+ +++ + + K
Sbjct: 143 VALGYRSVQQVIESHLLKLLQNIK 166
Score = 142 bits (360), Expect = 3e-39
Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 65/227 (28%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVN 549
++ + ++ + N
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVI--------------------------------N 30
Query: 550 LQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYF 609
D +G TPL A Q+ V L+ + AD
Sbjct: 31 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---------------------------- 62
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
+ E+ L +A S G + VK LL+ +DVN +G T L +A + + V+
Sbjct: 63 --QLLGKGRESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Query: 670 ILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTN 715
+LLE+ AD + + Y + A+ + +++ + +
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALG-YRSVQQVIESHLLKLLQNI 165
Score = 131 bits (333), Expect = 1e-35
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
N +++ A + L ++ + D + +PL+ + G +V+ LL+ AD
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
L K +AL A DI+K+LL D+N D G A + V
Sbjct: 62 PQLLG-KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 874 LLDAGSNIEKATKYRMT 890
LL++G++ T
Sbjct: 121 LLESGADPTIETDSGYN 137
Score = 115 bits (291), Expect = 7e-30
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 18/148 (12%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G+ L WA + + + L+ G L+ K ++ L A ++
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-----------GRESALSLACSKGYTDI 84
Query: 274 VKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
VK+LL+ G + + + T L A V VK+L + GA+ ++ +G +
Sbjct: 85 VKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD--PTIETDSGYNSM 139
Query: 332 HIACRRKCLEIVKILLDKGADINSGNDD 359
+A + +++ + +
Sbjct: 140 DLAVALGYRSVQQVIESHLLKLLQNIKE 167
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 170 bits (433), Expect = 1e-48
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 14/197 (7%)
Query: 288 EKSRN-RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKIL 346
+N + + + + N ++ TPL +AC + L
Sbjct: 3 HMDKNGEIVEKIKD--------EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKL 54
Query: 347 LDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGERTALHMASQFGNL 405
++ + + +G T L A+ N L + L++ G +++ +T L + FG
Sbjct: 55 VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS 114
Query: 406 EMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALH 463
EM +LL+H N+N ++ +G TPL S G E+ ++E GADI A+ + G TA
Sbjct: 115 EMSYFLLEHGANVNDRNLEGETPLIVASKYG--RSEIVKKLLELGADISARDLTGLTAEA 172
Query: 464 LACYFGNLAMVNYLVKH 480
A FG ++ +
Sbjct: 173 SARIFGRQEVIKIFTEV 189
Score = 164 bits (419), Expect = 9e-47
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 350 GADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVN 409
G+ ++ +G ++ + ++L N+ RT L +A G ++
Sbjct: 1 GSHMD---KNGEIVEKIKDEKSINQNLDFLRNYRD-----SYNRTPLMVACMLGMENAID 52
Query: 410 YLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACY 467
L+++ + +D +G T L L + ++ G+++ K G T L +
Sbjct: 53 KLVENFDKLEDKDIEGSTALIWAVKNN--RLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110
Query: 468 FGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTC 526
FG M +L++H ++N N G+TP+ A K EI LL+LGAD++ + + T
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Query: 527 LHVACEFASIEMVSFLLSH 545
A F E++
Sbjct: 171 EASARIFGRQEVIKIFTEV 189
Score = 162 bits (414), Expect = 5e-46
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 17/200 (8%)
Query: 315 GAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLE 374
G+ N G I + + + L N + TPL A
Sbjct: 1 GSHMDKN-----GEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMEN 49
Query: 375 VFNYLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-S 431
+ LV + L TAL A + L + LL N+N +D G TPL
Sbjct: 50 AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI 109
Query: 432 IKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLG 490
I G E+ + ++E GA++ + ++G T L +A +G +V L++ DI++ + G
Sbjct: 110 IFG--YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167
Query: 491 KTPIYFAIKNNHLEIFNLLL 510
T A E+ +
Sbjct: 168 LTAEASARIFGRQEVIKIFT 187
Score = 159 bits (404), Expect = 1e-44
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 12/187 (6%)
Query: 393 RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADI 451
+ + + +++L N++D TPL + G ++E +
Sbjct: 9 EIVEKIKDEKSINQNLDFL-----RNYRDSYNRTPLMVACMLG--MENAIDKLVENFDKL 61
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
+ K ++G+TAL A L + L+ ++N+++ GKTP+ ++I + E+ LL
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL 121
Query: 511 KLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQL 568
+ GA+V + T L VA ++ E+V LL G ++ +D G T A + +
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGRQ 180
Query: 569 EVFNHLI 575
EV
Sbjct: 181 EVIKIFT 187
Score = 154 bits (392), Expect = 4e-43
Identities = 54/225 (24%), Positives = 81/225 (36%), Gaps = 43/225 (19%)
Query: 418 NHQDKDGWTPLTCSIKGQASLEVFHSIIEAGAD--IKAKLMDGTTALHLACYFGNLAMVN 475
+H DK+G + I D + T L +AC G ++
Sbjct: 2 SHMDKNGEIVEKIKDEK---------SINQNLDFLRNYRDSYNRTPLMVACMLGMENAID 52
Query: 476 YLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFA 534
LV++ + ++ G T + +A+KNN L I LL G++V K S T L + F
Sbjct: 53 KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG 112
Query: 535 SIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLA 593
EM FLL H VN ++ +G TPL A + E+ L+ ADI
Sbjct: 113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI------------ 160
Query: 594 CATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLL 638
+ + G T A G E +K
Sbjct: 161 ------------------SARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 153 bits (390), Expect = 8e-43
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAI-EKSRN-RTALHVAAIVESVDIVKLLFDYGAE 317
TPL A + + L+E + +K TAL A + I + L G+
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDK---LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 318 KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFN 377
VN ++ +G TPL + E+ LL+ GA++N N +G TPL A E+
Sbjct: 94 --VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151
Query: 378 YLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH 414
L+ G D+S TA A FG E++ +
Sbjct: 152 KLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189
Score = 147 bits (373), Expect = 1e-40
Identities = 47/236 (19%), Positives = 87/236 (36%), Gaps = 47/236 (19%)
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
+ + GE + + + FL N ++ T L AC + ++ L
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYRD-------SYNRTPLMVACMLGMENAIDKL 54
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYR 730
+E + D T L A+ + L I + L+ G++VN + TPL ++
Sbjct: 55 VENFDKLEDKDIEGSTALIWAVKNN-RLGIAEKLLSKGSNVNTKDF--SGKTPLMWSIIF 111
Query: 731 GDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTS 790
G ++++ FL+E A++ RN T L A+ +++K LL+ GAD +D
Sbjct: 112 G-YSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA---RD-- 164
Query: 791 PLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
G TA +A + ++IK+ +
Sbjct: 165 -----------------------------LTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 139 bits (354), Expect = 4e-38
Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 25/203 (12%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKND---SPLHLACATGNMDMITYA 605
+ D G + + + L N Y++ +PL +AC G + I
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRN-------YRDSYNRTPLMVACMLGMENAI--- 51
Query: 606 MKYF-----DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFAC 660
+ ++ G T L AV + L + LL+ K +VN K G T L ++
Sbjct: 52 -DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSI 109
Query: 661 YDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACY 719
++ LLE A+VN + TPL A +I+K L++ GAD++ +
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG-RSEIVKKLLELGADISARDL--T 166
Query: 720 YMTPLHYASYRGDCNDIARFLVE 742
+T A G ++ + E
Sbjct: 167 GLTAEASARIFG-RQEVIKIFTE 188
Score = 136 bits (346), Expect = 5e-37
Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 14/169 (8%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
L A + LV+ L D T L A+ N+ + +
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKD-----IEGS------TALIWAVKNNRLGI 83
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
+ LL KG+N + S +T L + I ++ L ++GA VN +N+ G TPL +
Sbjct: 84 AEKLLSKGSNVNTKDFS-GKTPLMWSIIFGYSEMSYFLLEHGAN--VNDRNLEGETPLIV 140
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNH 382
A + EIVK LL+ GADI++ + G T A EV
Sbjct: 141 ASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189
Score = 125 bits (317), Expect = 5e-33
Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
+ N FL R+ NRT L A + + L++
Sbjct: 10 IVEKIKDEKS-INQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVENFDKL 61
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
+ D++ ++ L+ + + I + LL ++ N + G T L + ++ L
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD-FSGKTPLMWSIIFGYSEMSYFL 120
Query: 842 LKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
L++ A++N + G+ A + +IV LL+ G++I +T
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLT 169
Score = 63.9 bits (157), Expect = 1e-11
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L W++ ++++ L++ G +N + E +TPL A E+
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-----------EGETPLIVASKYGRSEI 149
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
VK LLE GA+ A + + TA A I +++K+ +
Sbjct: 150 VKKLLELGADISARDLTG-LTAEASARIFGRQEVIKIFTEVRR 191
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 167 bits (426), Expect = 6e-48
Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 44/209 (21%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGA-DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCD 385
+ + CR V++ LD D+N G+D G +PL A + V L+ G
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 386 LSVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHS 443
++V G+ T LH+A+ G+ ++V LL++ +IN ++ G P
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP---------------- 108
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNH 502
LH AC++G + LV + ++ N G+ P+ A
Sbjct: 109 ------------------LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 150
Query: 503 LEIFNLLLKLGADVAVKMKSNFTCLHVAC 531
+ K+G ++ N
Sbjct: 151 ELLRERAEKMGQNL------NRIPYKDTF 173
Score = 158 bits (403), Expect = 7e-45
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 7/177 (3%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+ + G AV+ L+ D+N G + L +AC + R +VE+L+
Sbjct: 3 PE-FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 675 NADVNLGD-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
A +N+ + G TPL+ A DI++ L++Y AD+N NE + PLHYA + G
Sbjct: 62 GARINVMNRGDDTPLHLAASHG-HRDIVQKLLQYKADINAVNE--HGNVPLHYACFWG-Q 117
Query: 734 NDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTS 790
+ +A LV A +++ N ++ A L + K G + + + KDT
Sbjct: 118 DQVAEDLV-ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 173
Score = 153 bits (389), Expect = 7e-43
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 34/195 (17%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH--IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGA 514
+ + C GN V + + D+N +D G +P+++A + + +L+ GA
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 515 DVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNH 573
+ V + + T LH+A ++V LL + +N + G PLH A Q +V
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123
Query: 574 LINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEA 633
L+ + A + +I N GE P+ A +
Sbjct: 124 LVANGALV------------------------------SICNKYGEMPVDKAKAPLRELL 153
Query: 634 VKFLLNTKNIDVNHK 648
+ ++N
Sbjct: 154 RERAEK-MGQNLNRI 167
Score = 147 bits (374), Expect = 7e-41
Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 45/212 (21%)
Query: 524 FTCLHVACEFASIEMVSFLLSH--IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
+ C + V L + +N D+ G +PLH A + V LI A I
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 582 TMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTK 641
N+ N +TPLH+A SHG + V+ LL
Sbjct: 66 ------------------------------NVMNRGDDTPLHLAASHGHRDIVQKLLQ-Y 94
Query: 642 NIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD--GTYTPLYTALMKDPSLD 699
D+N + G+ L +AC+ + + E L+ A V++ + G P+ A
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG-EMPVDKAKAPL-REL 152
Query: 700 IIKMLVKYGADVNLTNEACYYMTPLHYASYRG 731
+ + K G ++N P ++G
Sbjct: 153 LRERAEKMGQNLN--------RIPYKDTFWKG 176
Score = 145 bits (369), Expect = 3e-40
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 22/194 (11%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKG-VPLNLVDK-GVPLNYSRRIIETDTPLHSAILNSDI 271
+ +E +L +D LN D G +PLH A
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHG------------FSPLHWACREGRS 52
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
+V++L+ +GA + + + T LH+AA DIV+ L Y A+ +N N G PL
Sbjct: 53 AVVEMLIMRGARINVMNRG-DDTPLHLAASHGHRDIVQKLLQYKAD--INAVNEHGNVPL 109
Query: 332 HIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG 391
H AC ++ + L+ GA ++ N G P+ A A + G +L
Sbjct: 110 HYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL----- 164
Query: 392 ERTALHMASQFGNL 405
R G
Sbjct: 165 NRIPYKDTFWKGTT 178
Score = 141 bits (359), Expect = 6e-39
Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 2/164 (1%)
Query: 720 YMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA 779
+M + G+ R ++ D+ + + + L++A +++ L+ GA
Sbjct: 5 FMDDIFTQCREGNA-VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 780 DPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIK 839
++++ D +PL + G +IV LL+Y AD N +HG+ LH A F Q + +
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN-EHGNVPLHYACFWGQDQVAE 122
Query: 840 LLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEK 883
L+ A ++ +KYG++ A + G N+ +
Sbjct: 123 DLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166
Score = 72.9 bits (180), Expect = 7e-15
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 820 KHGSTALHTAAFHNQLDIIKLLLKYNA-DINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
+ T ++L L D+N D +G H AC+ +V L+ G
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 879 SNIEKATKYRMT 890
+ I + T
Sbjct: 63 ARINVMNRGDDT 74
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 162 bits (412), Expect = 4e-46
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 38/203 (18%)
Query: 280 KGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKC 339
+G++ S L AA D V++L GA+ VN ++ +G TPLH+A
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGH 59
Query: 340 LEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGERTALHM 398
LEIV++LL GAD+N+ + G TPL A LE+ L+ +G D++ T LH+
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL 119
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMD 457
A+ FG+LE+V LLK+ ++N QDK G T
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTA------------------------------ 149
Query: 458 GTTALHLACYFGNLAMVNYLVKH 480
++ GN + L K
Sbjct: 150 ----FDISIDNGNEDLAEILQKL 168
Score = 155 bits (395), Expect = 8e-44
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 377 NYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKG 434
++ +HG DL L A++ G + V L+ + ++N +D GWTPL + G
Sbjct: 5 HHHHHHGSDL------GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG 58
Query: 435 QASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTP 493
LE+ +++ GAD+ A G T L LA FG+L +V L+K+ D+N+ + G TP
Sbjct: 59 --HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116
Query: 494 IYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
++ A HLEI +LLK GADV + K T ++ + + ++ L
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 145 bits (370), Expect = 2e-40
Identities = 64/230 (27%), Positives = 86/230 (37%), Gaps = 65/230 (28%)
Query: 448 GADI-KAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEI 505
G+ D L A G V L+ + D+N+E+ G TP++ A N HLEI
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 506 FNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVG 565
+LLK GADV N D+ G TPL A +
Sbjct: 63 VEVLLKNGADV--------------------------------NAVDHAGMTPLRLAALF 90
Query: 566 NQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVA 625
LE+ L+ + AD+ N + G TPLH+A
Sbjct: 91 GHLEIVEVLLKNGADV------------------------------NANDMEGHTPLHLA 120
Query: 626 VSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
G LE V+ LL DVN + K G TA + + DL EIL + N
Sbjct: 121 AMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 139 bits (354), Expect = 3e-38
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 18/171 (10%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
K L A + + D ++L+ G +N D TPLH A N +E+
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDA-----------SGWTPLHLAAFNGHLEI 62
Query: 274 VKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
V++LL+ GA+ + + T L +AA+ ++IV++L GA+ VN ++ G TPL
Sbjct: 63 VEVLLKNGAD---VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD--VNANDMEGHTPL 117
Query: 332 HIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNH 382
H+A LEIV++LL GAD+N+ + G T +I ++ L
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 135 bits (342), Expect = 1e-36
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 549 NLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKY 608
+ + L A + + L+ + AD+
Sbjct: 8 HHHGSDLGKKLLEAARAGRDDEVRILMANGADV--------------------------- 40
Query: 609 FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLV 668
N E+ G TPLH+A +G LE V+ LL DVN G T L A L++V
Sbjct: 41 ---NAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIV 96
Query: 669 EILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYA 727
E+LL+ ADVN D +TPL+ A M L+I+++L+K GADVN ++ + T +
Sbjct: 97 EVLLKNGADVNANDMEGHTPLHLAAMFG-HLEIVEVLLKNGADVNAQDK--FGKTAFDIS 153
Query: 728 SYRGDCNDIARFLVE 742
G D+A L +
Sbjct: 154 IDNG-NEDLAEILQK 167
Score = 134 bits (341), Expect = 1e-36
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 708 GADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNN 767
G+ + + + L A+ G +D R L+ AD+ + + T L+ AAF +
Sbjct: 3 GSHHHHHHGS-DLGKKLLEAARAG-RDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGH 59
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
L++++ LLK GAD + +D +PL + G EIV+ LL+ AD N G T LH
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND-MEGHTPLH 118
Query: 828 TAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLL 875
AA L+I+++LLK AD+NA+DK+GK AF + N D+ L
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 132 bits (334), Expect = 1e-35
Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 73/237 (30%)
Query: 610 DVNIENDI-GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLV 668
+ + L A G + V+ L+ DVN + G T L A ++ L++V
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIV 63
Query: 669 EILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYAS 728
E+LL+ ADVN D G MTPL A+
Sbjct: 64 EVLLKNGADVNAVD-----------------------HAG------------MTPLRLAA 88
Query: 729 YRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKD 788
G +I L++ AD+ + T L+ AA +L++++ LLK GAD + D
Sbjct: 89 LFG-HLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD--- 143
Query: 789 TSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
K G TA + + D+ ++L K N
Sbjct: 144 -------------------------------KFGKTAFDISIDNGNEDLAEILQKLN 169
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 161 bits (409), Expect = 9e-46
Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 39/192 (20%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
L A R LE + LL ++N+ N G T L E+ L+ G +
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANP 63
Query: 387 SVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSI 444
+ +H A++ G L+ + LL+ ++N +D +G P
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP----------------- 106
Query: 445 IEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH--IDINSENDLGKTPIYFAIKNNH 502
LHLA G+L +V +LVKH ++ N G T A
Sbjct: 107 -----------------LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Query: 503 LEIFNLLLKLGA 514
E+ +L+ GA
Sbjct: 150 NEVVSLMQANGA 161
Score = 150 bits (382), Expect = 3e-42
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 390 EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAG 448
E L A+ G+LE + LL++ +N+N Q+ G T L G + E+ ++ G
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG--NPEIARRLLLRG 60
Query: 449 ADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFN 507
A+ K G +H A G L + L++ D+N E++ G P++ A K HL +
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 508 LLLKLGA-DVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
L+K A +V + T +A + E+VS + ++
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 150 bits (381), Expect = 4e-42
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
L SA D+E + LL+ N A RTAL V + + +I + L GA
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVMKL-GNPEIARRLLLRGAN-- 62
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
++++ G +H A R L+ ++ LL+ AD+N +++G PL A + L V +L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 380 VNHG-CDLSVP-EGERTALHMASQFGNLEMVNYLLKH 414
V H ++ TA +A +G E+V+ + +
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 140 bits (357), Expect = 8e-39
Identities = 47/221 (21%), Positives = 78/221 (35%), Gaps = 64/221 (28%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
L A G+L + L+++ +++N++N G+T + K + EI LL GA+
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGAN 62
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLI 575
+L+D G +H A L+ L+
Sbjct: 63 P--------------------------------DLKDRTGFAVIHDAARAGFLDTLQTLL 90
Query: 576 NSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVK 635
AD+ NIE++ G PLH+A G L V+
Sbjct: 91 EFQADV------------------------------NIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 636 FLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANA 676
FL+ +V H+ G TA A R ++V ++ A
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 137 bits (347), Expect = 2e-37
Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 16/171 (9%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
L A + L+ V +N + T L L + E+
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNG-----------FGRTALQVMKLGN-PEI 52
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
+ LL +GANP +++ +H AA +D ++ L ++ A+ VN+++ G PLH+
Sbjct: 53 ARRLLLRGANPDLKDRT-GFAVIHDAARAGFLDTLQTLLEFQAD--VNIEDNEGNLPLHL 109
Query: 334 ACRRKCLEIVKILLDKGA-DINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG 383
A + L +V+ L+ A ++ N G T A EV + + +G
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 128 bits (325), Expect = 2e-34
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 720 YMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA 779
+ L A+ RG + L++ N ++ +N RTAL GN ++ + LL GA
Sbjct: 5 WGNELASAAARG-DLEQLTSLLQ-NNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGA 61
Query: 780 DPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIK 839
+PD+ D + + + R G + + TLLE+ AD N+ G+ LH AA L +++
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED-NEGNLPLHLAAKEGHLRVVE 120
Query: 840 LLLKYNA-DINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
L+K+ A ++ + G A A ++V+ + G
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 124 bits (313), Expect = 6e-33
Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 38/193 (19%)
Query: 552 DNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDV 611
L A LE L+ +N ++
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNV------------------------------ 31
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N +N G T L V G E + LL + + + K + G + A LD ++ L
Sbjct: 32 NAQNGFGRTALQVM-KLGNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDTLQTL 89
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA-DVNLTNEACYYMTPLHYASY 729
LE ADVN+ D PL+ A + L +++ LVK+ A +V N T A
Sbjct: 90 LEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146
Query: 730 RGDCNDIARFLVE 742
G N++ +
Sbjct: 147 YG-RNEVVSLMQA 158
Score = 120 bits (304), Expect = 1e-31
Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 40/199 (20%)
Query: 649 TKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKY 707
+ L A L+ + LL+ N +VN +G T L + + +I + L+
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG--NPEIARRLLLR 59
Query: 708 GADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNN 767
GA+ +L + +H A+ G D + L+E AD+ + + L+ AA +
Sbjct: 60 GANPDLKDR--TGFAVIHDAARAG-FLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGH 115
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
L +++FL+K A ++ ++ G TA
Sbjct: 116 LRVVEFLVKHTA-SNV-GHRN-------------------------------HKGDTACD 142
Query: 828 TAAFHNQLDIIKLLLKYNA 846
A + + +++ L+ A
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 163 bits (415), Expect = 1e-45
Identities = 53/282 (18%), Positives = 85/282 (30%), Gaps = 61/282 (21%)
Query: 260 TPLHSAILNSDIELVKLLLEK----GANPLAIEKSRN---RTALHVAAIVES---VDIVK 309
L S + E + LLE + +T L A + +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 310 LLFDYGAEK---------SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDG 360
L + + G + LHIA ++ L+ VK+L++ GAD++
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 361 CTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHI----N 416
G L +A+ ++V YLL++ +
Sbjct: 124 FFQKHQGTC----------FYFG---------ELPLSLAACTKQWDVVTYLLENPHQPAS 164
Query: 417 INHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
+ D G T L H + A +AL + Y G L M
Sbjct: 165 LEATDSLGNTVL-------------H-----ALVMIADNSPENSALVIHMYDGLLQMGAR 206
Query: 477 LVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVA 517
L N G TP+ A K +EIF +L+ A
Sbjct: 207 LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 133 bits (337), Expect = 4e-35
Identities = 50/296 (16%), Positives = 90/296 (30%), Gaps = 67/296 (22%)
Query: 586 NDSPLHLACATGNMDMITYAMKYF---------DVNIENDIGETPLHVAVSH---GCLEA 633
+ L + G + +T ++Y E G+T L AV + G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 634 VKFLLN----------TKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGD- 682
+ LL N + G +AL A + L V++L+E ADV+L
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 683 GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
G + + +G PL A+ D+ +L+E
Sbjct: 122 GRFFQKHQG-----------TCFYFG------------ELPLSLAACTK-QWDVVTYLLE 157
Query: 743 --ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGL 800
A + + T L+ + + + S L+ GL
Sbjct: 158 NPHQPASLEATDSLGNTVLHALVMIAD-----------------NSPENSALVIHMYDGL 200
Query: 801 YEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGK 856
++ L + G T L AA +++I + +L+ A +
Sbjct: 201 LQMGARLCPTVQLEEISN-HQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 129 bits (326), Expect = 1e-33
Identities = 44/298 (14%), Positives = 82/298 (27%), Gaps = 87/298 (29%)
Query: 392 ERTALHMASQFGNLEMVNYLLKH---------ININHQDKDGWTPL-TCSIKGQA-SLEV 440
+R L G E + LL++ + + G T L + Q
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 441 FHSIIEAG-----------ADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDIN---- 484
+++ A + G +ALH+A +L V LV++ D++
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 485 ---------SENDLGKTPIYFAIKNNHLEIFNLLLKLG---ADVAVKMKSNFTCLHVACE 532
+ G+ P+ A ++ LL+ A + T LH
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV- 180
Query: 533 FASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHL 592
+ ++ + L + L++ L +
Sbjct: 181 ---------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQL------------ 213
Query: 593 ACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLN--TKNIDVNHK 648
I N G TPL +A G +E + +L +H
Sbjct: 214 ------------------EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHH 253
Score = 126 bits (319), Expect = 1e-32
Identities = 52/277 (18%), Positives = 83/277 (29%), Gaps = 49/277 (17%)
Query: 187 KALEEELTNIFKKFDLLEHPEYLSHSQGYKALCWALQEKK---TDIAKLLVDKGVPLNLV 243
+ L L + L Y S G L A+ + L+
Sbjct: 16 EELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNP 75
Query: 244 DKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVE 303
V + + + LH AI ++ VKLL+E GA+ V
Sbjct: 76 KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD------------------VH 117
Query: 304 SVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKG---ADINSGNDDG 360
+K G PL +A K ++V LL+ A + + + G
Sbjct: 118 LRAC-----GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLG 172
Query: 361 CTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKH-ININH 419
T L V + E +AL + G L+M L
Sbjct: 173 NTVLHAL------------VMIADN----SPENSALVIHMYDGLLQMGARLCPTVQLEEI 216
Query: 420 QDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKL 455
+ G TPL + +G +E+F I++ A
Sbjct: 217 SNHQGLTPLKLAAKEG--KIEIFRHILQREFSGAAAH 251
Score = 94.5 bits (235), Expect = 1e-21
Identities = 35/223 (15%), Positives = 56/223 (25%), Gaps = 51/223 (22%)
Query: 719 YYMTPLHYASYRGDCNDIARFLVEEC------NADITLRNFNNRTALNFAAF---GNNLD 769
+ L RG ++ L +T L A
Sbjct: 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60
Query: 770 LLKFLLKAGADPDIL-----------DLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRT 818
+ LL+ D + S L + + + V L+E AD +LR
Sbjct: 61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 819 ------------IKHGSTALHTAAFHNQLDIIKLLLK---YNADINAEDKYGKIAFHSAC 863
G L AA Q D++ LL+ A + A D G H+
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Query: 864 QAKNW----------------DIVTFLLDAGSNIEKATKYRMT 890
+ + L E + +T
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223
Score = 68.3 bits (167), Expect = 1e-12
Identities = 27/135 (20%), Positives = 41/135 (30%), Gaps = 23/135 (17%)
Query: 788 DTSPLLSSCRQGLYEIVDTLLEY--------NADTNLRTIKHGSTALHTAAFH---NQLD 836
D L S +G+ E + LLEY G T L A +
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEG-STGKTCLMKAVLNLQDGVNA 60
Query: 837 IIKLLLKY-----------NADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKAT 885
I LL+ NA E G A H A + ++ V L++ G+++
Sbjct: 61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 886 KYRMTFESSKVVEKH 900
R +
Sbjct: 121 CGRFFQKHQGTCFYF 135
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 160 bits (407), Expect = 3e-44
Identities = 48/281 (17%), Positives = 94/281 (33%), Gaps = 62/281 (22%)
Query: 260 TPLHSAILNSDIELVKLLLE-------KGANPLAIEKSRNRTALHVAAIVES---VDIVK 309
+ A+ S+ + ++ LL + + + +T L A + D +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 310 LLFDYGAEK---------SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDG 360
LL D + S G T LHIA R+ + +V +L++ GAD+ + +
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134
Query: 361 CTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHI----N 416
GE L +A+ L +V +LL++ +
Sbjct: 135 FFKK-----------------TKGRPGFYFGE-LPLSLAACTNQLAIVKFLLQNSWQPAD 176
Query: 417 INHQDKDGWTPL-TCSIKGQAS--------------LEVFHSIIEAGADIKAKLMDGTTA 461
I+ +D G T L + L + + + G T
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236
Query: 462 LHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNH 502
L LA G + ++ Y+++ +I+ + A ++H
Sbjct: 237 LALAASSGKIGVLAYILQR-EIH-----EPECRHAAAHHHH 271
Score = 146 bits (370), Expect = 2e-39
Identities = 49/334 (14%), Positives = 103/334 (30%), Gaps = 77/334 (23%)
Query: 281 GANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNV------AGLTPLHIA 334
A + +R ++ A + ++ L + + + G T L A
Sbjct: 3 SAGEKP-PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 335 ---CRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEG 391
+ + +LLD +S VN S +G
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDS--------------------LKQFVNASYTDSYYKG 101
Query: 392 ERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGAD 450
+TALH+A + N+ +V L+++ ++ +
Sbjct: 102 -QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK--------------------KTK 140
Query: 451 IKAKLMDGTTALHLACYFGNLAMVNYLVKHI----DINSENDLGKTPIYFAIKNNHLEIF 506
+ G L LA LA+V +L+++ DI++ + +G T ++ ++ +
Sbjct: 141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGN 566
N + S + + + A + L + + KG TPL A
Sbjct: 201 NTKF---------VTSMYNEILILG--AKLHPTLKL-----EEITNRKGLTPLALAASSG 244
Query: 567 QLEVFNHLINSNADITMYKNDSPLHLACATGNMD 600
++ V +++ H A +
Sbjct: 245 KIGVLAYILQREIH-----EPECRHAAAHHHHHH 273
Score = 133 bits (337), Expect = 6e-35
Identities = 53/337 (15%), Positives = 94/337 (27%), Gaps = 79/337 (23%)
Query: 447 AGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHI--------DIN-SENDLGKTPIYFA 497
A K + ++ A N + L+ + D + + GKT + A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 498 ---IKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNK 554
+ N + LLL + + + K
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQ---------------------FVNASYTDSYYK 100
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIE 614
G T LH AI + + L+ + AD+ N
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKT----------------KGRPG 144
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLN--TKNIDVNHKTKDGSTALFFACYDKRLDLVEILL 672
GE PL +A L VKFLL + D++ + G+T L +
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF 204
Query: 673 EANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGD 732
+ M + L + L +TN +TPL A+ G
Sbjct: 205 VTS-----------------MYNEILILGAKLHPTLKLEEITNR--KGLTPLALAASSG- 244
Query: 733 CNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLD 769
+ ++++ R + + AA ++
Sbjct: 245 KIGVLAYILQ--------REIHEPECRHAAAHHHHHH 273
Score = 132 bits (334), Expect = 2e-34
Identities = 47/321 (14%), Positives = 87/321 (27%), Gaps = 88/321 (27%)
Query: 392 ERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
+R ++ A N + + LL + D
Sbjct: 13 DRRSIFDAVAQSNCQELESLL--------------------------PFLQRSKKRLTDS 46
Query: 452 KAKLMD-GTTALHLA---CYFGNLAMVNYLVKH------------IDINSENDLGKTPIY 495
+ K + G T L A + G + L+ G+T ++
Sbjct: 47 EFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALH 106
Query: 496 FAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKG 555
AI+ ++ + LL++ GADV +F G
Sbjct: 107 IAIERRNMTLVTLLVENGADVQAAANGDFFKKTKG------------------RPGFYFG 148
Query: 556 CTPLHCAIVGNQLEVFNHLIN---SNADITMYKND--SPLHLACATGNMDMITYAMKYFD 610
PL A NQL + L+ ADI+ + + LH +
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD------------ 196
Query: 611 VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEI 670
N + T ++ + L L+ + G T L A ++ ++
Sbjct: 197 ----NTVDNTKFVTSMYNEILILGA-KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY 251
Query: 671 LLEANADVNLGDGTYTPLYTA 691
+L+ + A
Sbjct: 252 ILQREIHEP------ECRHAA 266
Score = 129 bits (327), Expect = 1e-33
Identities = 50/254 (19%), Positives = 84/254 (33%), Gaps = 39/254 (15%)
Query: 184 NSDKALEEELTNIFKKFDLLEHPEYLSHSQGYKALCWAL---QEKKTDIAKLLVDKGVPL 240
++ + LE L + + L E+ G L A+ + D LL+D
Sbjct: 24 SNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83
Query: 241 NLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGAN-------------PLAI 287
+ + + V +Y+ + T LH AI ++ LV LL+E GA+
Sbjct: 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRP 143
Query: 288 EKSRNRTALHVAAIVESVDIVKLLFDYGAEK-SVNVQNVAGLTPLHIACRR--------- 337
L +AA + IVK L + ++ ++ G T LH
Sbjct: 144 GFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203
Query: 338 -------KCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE 390
+ L + L N G TPL A + + V Y++
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH----- 258
Query: 391 GERTALHMASQFGN 404
E H A+ +
Sbjct: 259 -EPECRHAAAHHHH 271
Score = 128 bits (324), Expect = 4e-33
Identities = 47/306 (15%), Positives = 91/306 (29%), Gaps = 73/306 (23%)
Query: 584 YKNDSPLHLACATGNMDMITYAMKYFDVNIEN---------DIGETPLHVAVSH---GCL 631
+ + A A N + + + + + + G+T L A+ + G
Sbjct: 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN 70
Query: 632 EAVKFLLNTK----------NIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLG 681
+ + LL+ N G TAL A + + LV +L+E ADV
Sbjct: 71 DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA 130
Query: 682 D-GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFL 740
G + + PL A+ I +FL
Sbjct: 131 ANGDFFKKT----------------------KGRPGFYFGELPLSLAACTN-QLAIVKFL 167
Query: 741 VE--ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQ 798
++ ADI+ R+ T L+ + D + ++S
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNT-----------------VDNTKFVTSMYN 210
Query: 799 GLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIA 858
+ + L + + G T L AA ++ ++ +L+ + +
Sbjct: 211 EILILGAKLHPTLKLEEITN-RKGLTPLALAASSGKIGVLAYILQ-------REIHEPEC 262
Query: 859 FHSACQ 864
H+A
Sbjct: 263 RHAAAH 268
Score = 107 bits (270), Expect = 4e-26
Identities = 45/298 (15%), Positives = 86/298 (28%), Gaps = 71/298 (23%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNT------KNIDVNHK-TKDGSTALFFA--- 659
+ AV+ + ++ LL + D K + G T L A
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 660 CYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACY 719
++ + D + +LL+ + +K + + T+
Sbjct: 65 LHNGQNDTIALLLDVARKTDS------------------------LKQFVNASYTDSYYK 100
Query: 720 YMTPLHYASYRGDCNDIARFLVEECNADITLRNFNN--------------RTALNFAAFG 765
T LH A R + LVE AD+ + L+ AA
Sbjct: 101 GQTALHIAIERR-NMTLVTLLVE-NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT 158
Query: 766 NNLDLLKFLLKAG---ADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHG 822
N L ++KFLL+ AD D + L + + +T
Sbjct: 159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF-------------- 204
Query: 823 STALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
T+ ++ L + L ++ G A + ++ ++L +
Sbjct: 205 ----VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258
Score = 87.9 bits (218), Expect = 3e-19
Identities = 36/210 (17%), Positives = 57/210 (27%), Gaps = 51/210 (24%)
Query: 707 YGADVNLTNEACYYMTPLHYASYRGDCNDIARFLV-----EECNADITLRNFNN-RTALN 760
A Y + A + +C ++ L ++ D ++ +T L
Sbjct: 2 VSAGEK--PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLL 59
Query: 761 FAAF---GNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLR 817
A D + LL D L NA
Sbjct: 60 KAMLNLHNGQNDTIALLLDVARKTDSLKQ----------------------FVNASYTDS 97
Query: 818 TIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDK--------------YGKIAFHSAC 863
G TALH A + ++ LL++ AD+ A +G++ A
Sbjct: 98 Y-YKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156
Query: 864 QAKNWDIVTFLLDAGS---NIEKATKYRMT 890
IV FLL +I T
Sbjct: 157 CTNQLAIVKFLLQNSWQPADISARDSVGNT 186
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 154 bits (393), Expect = 9e-44
Identities = 47/193 (24%), Positives = 71/193 (36%), Gaps = 39/193 (20%)
Query: 291 RNRTALHVAAIVESVDIVK-LLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDK 349
R L AA V V+ LL + N G T L + I LL +
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVH--PDALNRFGKTALQVMMF-GSTAIALELLKQ 57
Query: 350 GADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMV 408
GA N + G +P+ A L+ LV HG D++VP+G +H+A Q G+ +V
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
Query: 409 NYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYF 468
++L +++ +D G TP L LA
Sbjct: 118 SFLAAESDLHRRDARGLTP----------------------------------LELALQR 143
Query: 469 GNLAMVNYLVKHI 481
G +V+ L H+
Sbjct: 144 GAQDLVDILQGHM 156
Score = 146 bits (370), Expect = 1e-40
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 394 TALHMASQFGNLEMVNYLL-KH-ININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI 451
L A+ G+++ V LL + ++ + ++ G T L + G S + +++ GA
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG--STAIALELLKQGASP 61
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLL 510
+ GT+ +H A G L + LV+H D+N + G PI+ A++ H + + L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 511 KLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHI 546
+D+ + T L +A + + ++V L H+
Sbjct: 122 A-ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156
Score = 136 bits (344), Expect = 4e-37
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 8/160 (5%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
L A + G ++ V+ LL+ + + + + G TAL + + LL+ A
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGAS 60
Query: 678 VNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
N+ D + +P++ A LD +K+LV++GADVN+ + P+H A G +
Sbjct: 61 PNVQDTSGTSPVHDAARTG-FLDTLKVLVEHGADVNVPDG--TGALPIHLAVQEG-HTAV 116
Query: 737 ARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLK 776
FL +D+ R+ T L A DL+ L
Sbjct: 117 VSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 134 bits (339), Expect = 2e-36
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 4/155 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
L A+ RGD R L+ N +TAL FG+ + LLK GA P
Sbjct: 4 DRLSGAAARGDV-QEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASP 61
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
++ D TSP+ + R G + + L+E+ AD N+ G+ +H A ++ L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD-GTGALPIHLAVQEGHTAVVSFL 120
Query: 842 LKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
+D++ D G A Q D+V L
Sbjct: 121 AA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 130 bits (331), Expect = 2e-35
Identities = 46/218 (21%), Positives = 69/218 (31%), Gaps = 67/218 (30%)
Query: 458 GTTALHLACYFGNLAMVNYLV-KH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
L A G++ V L+ + + ++ N GKT + + I LLK GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLI 575
N+QD G +P+H A L+ L+
Sbjct: 61 P--------------------------------NVQDTSGTSPVHDAARTGFLDTLKVLV 88
Query: 576 NSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVK 635
AD+ N+ + G P+H+AV G V
Sbjct: 89 EHGADV------------------------------NVPDGTGALPIHLAVQEGHTAVVS 118
Query: 636 FLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE 673
FL D++ + G T L A DLV+IL
Sbjct: 119 FLA--AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 123 bits (311), Expect = 1e-32
Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 37/190 (19%)
Query: 554 KGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNI 613
+ L A ++ L++ L +
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHR-------------ELV----------------HPDA 31
Query: 614 ENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE 673
N G+T L V G LL + N + G++ + A LD +++L+E
Sbjct: 32 LNRFGKTALQVM-MFGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 89
Query: 674 ANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGD 732
ADVN+ DGT P++ A+ + ++ L +D++ + +TPL A RG
Sbjct: 90 HGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAA-ESDLHRRDA--RGLTPLELALQRG- 144
Query: 733 CNDIARFLVE 742
D+ L
Sbjct: 145 AQDLVDILQG 154
Score = 99.0 bits (248), Expect = 3e-24
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 49/169 (28%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G AL T IA L+ +G N+ D
Sbjct: 36 GKTALQVM-MFGSTAIALELLKQGASPNVQDTS--------------------------- 67
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
+ +H AA +D +K+L ++GA+ VNV + G P+H+
Sbjct: 68 ------------------GTSPVHDAARTGFLDTLKVLVEHGAD--VNVPDGTGALPIHL 107
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNH 382
A + +V L +D++ + G TPL A+ + ++ + L H
Sbjct: 108 AVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 69.0 bits (170), Expect = 1e-13
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 822 GSTALHTAAFHNQLDIIK-LLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
L AA + ++ LL + +A +++GK A + I LL G++
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 881 IEKATKYRMT 890
+
Sbjct: 61 PNVQDTSGTS 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 150 bits (383), Expect = 2e-42
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 36/185 (19%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
L A R + V+IL+ GA + + G +PL A L+ G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 387 SVP-EGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSII 445
+ +RT LHMA+ G+ +V LLKH
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKH------------------------------- 89
Query: 446 EAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLE 504
GAD+ AK M TALH A + +V L+K+ D+++++ KT +I N + +
Sbjct: 90 --GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147
Query: 505 IFNLL 509
+ +L
Sbjct: 148 LAEIL 152
Score = 150 bits (382), Expect = 2e-42
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 7/154 (4%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRN-RTALHVAAIVESVDIVKLLFDYGAEK 318
L A + V++L+ GA + LH+AA ++L G
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAP---FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS- 59
Query: 319 SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNY 378
+ + TPLH+A IV++LL GAD+N+ + T L A N EV
Sbjct: 60 -RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 379 LVNHGCDLSVP-EGERTALHMASQFGNLEMVNYL 411
L+ +G D+ + +TA ++ GN ++ L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 138 bits (350), Expect = 6e-38
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 33/183 (18%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
D L A G V L+ + ++ G +P++ A + H +LL+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHL 574
+ K + T LH+A +V LL H VN +D T LH A N EV L
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 575 INSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAV 634
I AD+ + ++ +T +++ +G +
Sbjct: 120 IKYGADV------------------------------HTQSKFCKTAFDISIDNGNEDLA 149
Query: 635 KFL 637
+ L
Sbjct: 150 EIL 152
Score = 136 bits (346), Expect = 2e-37
Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 36/183 (19%)
Query: 394 TALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKA 453
L A++ G + V L+ + GA
Sbjct: 4 KKLLEAARAGQDDEVRILMAN---------------------------------GAPFTT 30
Query: 454 KLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
GT+ LHLA +G+ + L++ + ++ + +TP++ A H I +LLK
Sbjct: 31 D-WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 513 GADVAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVF 571
GADV K T LH A E E+V L+ + V+ Q T +I ++
Sbjct: 90 GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149
Query: 572 NHL 574
L
Sbjct: 150 EIL 152
Score = 136 bits (345), Expect = 2e-37
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
K L A + + D ++L+ G P G +PLH A
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLG------------TSPLHLAAQYGHFST 49
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
++LL G + A K +RT LH+AA +IV++L +GA+ VN +++ +T LH
Sbjct: 50 TEVLLRAGVSRDARTKV-DRTPLHMAASEGHANIVEVLLKHGAD--VNAKDMLKMTALHW 106
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
A E+V++L+ GAD+++ + T +I ++ L
Sbjct: 107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 127 bits (321), Expect = 4e-34
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADP 781
L A+ G +D R L+ A T ++ + L+ AA + + LL+AG
Sbjct: 4 KKLLEAARAG-QDDEVRILMA-NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 782 DILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL 841
D D +PL + +G IV+ LL++ AD N + TALH A HN ++++LL
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD-MLKMTALHWATEHNHQEVVELL 119
Query: 842 LKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
+KY AD++ + K+ K AF + N D+ L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 126 bits (320), Expect = 5e-34
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
L A G + V+ L+ G++ L A E+LL A
Sbjct: 2 LGKKLLEAARAGQDDEVRILMA-NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 678 VNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
+ TPL+ A + +I+++L+K+GADVN + MT LH+A+ ++
Sbjct: 60 RDARTKVDRTPLHMAASEG-HANIVEVLLKHGADVNAKDM--LKMTALHWATEHN-HQEV 115
Query: 737 ARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
L++ AD+ ++ +TA + + N DL + L
Sbjct: 116 VELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 124 bits (315), Expect = 2e-33
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 37/187 (19%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIE 614
L A Q + L+ + A T
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-------------------------------T 30
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+ +G +PLH+A +G + LL + + +TK T L A + ++VE+LL+
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 675 NADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDC 733
ADVN D T L+ A + +++++L+KYGADV+ ++ C T + G
Sbjct: 90 GADVNAKDMLKMTALHWATEHN-HQEVVELLIKYGADVHTQSKFCK--TAFDISIDNG-N 145
Query: 734 NDIARFL 740
D+A L
Sbjct: 146 EDLAEIL 152
Score = 112 bits (283), Expect = 5e-29
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
+ L AA D ++ L+ GA D TSPL + + G + + LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
+ RT K T LH AA +I+++LLK+ AD+NA+D A H A + + ++V
Sbjct: 60 RDART-KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 874 LLDAGSNIEKATKYRMT 890
L+ G+++ +K+ T
Sbjct: 119 LIKYGADVHTQSKFCKT 135
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 150 bits (381), Expect = 3e-42
Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 42/192 (21%)
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVF 376
E + L A R +E V+ LL+ GA+ N+ N G P+ V
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVA 60
Query: 377 NYLVNHGCDLSV--PEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKG 434
L+ HG + + P +H A++ G L+ + L +
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-------------------- 100
Query: 435 QASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTP 493
GA + + G + LA G+ + YL G
Sbjct: 101 -------------GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNH 142
Query: 494 IYFAIKNNHLEI 505
+I
Sbjct: 143 ARIDAAEGPSDI 154
Score = 141 bits (359), Expect = 3e-39
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 9/151 (5%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
L +A +E V+ LLE GANP A R + V + S + +LL +GAE
Sbjct: 13 ADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMMM-GSARVAELLLLHGAE- 69
Query: 319 SVNVQNVAGLT-PLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFN 377
N + A LT P+H A R L+ + +L GA ++ + G P+ A +V
Sbjct: 70 -PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128
Query: 378 YLVNHGCDLSVPEGERTALHMASQFGNLEMV 408
YL + + G ++
Sbjct: 129 YLRAAAGGTR----GSNHARIDAAEGPSDIP 155
Score = 122 bits (309), Expect = 2e-32
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 9/157 (5%)
Query: 705 VKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAF 764
++ A ++ L A+ RG + R L+E A+ N R +
Sbjct: 1 MEPAAGSSMEPS----ADWLATAAARG-RVEEVRALLE-AGANPNAPNSYGRRPIQVMMM 54
Query: 765 GNNLDLLKFLLKAGADPDILDLKD-TSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGS 823
G+ + + LL GA+P+ D T P+ + R+G + + L A ++R G
Sbjct: 55 GS-ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD-AWGR 112
Query: 824 TALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFH 860
+ A D+ + L + A
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 120 bits (303), Expect = 1e-31
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
+ L AA ++ ++ LL+AGA+P+ + P+ G + + LL + A+
Sbjct: 11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAE 69
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
N + +H AA LD + +L + A ++ D +G++ A + + D+ +
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129
Query: 874 LLDAGSNIEKATKYRMT 890
L A + R+
Sbjct: 130 LRAAAGGTRGSNHARID 146
Score = 119 bits (301), Expect = 2e-31
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 19/162 (11%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
L A + + + L++ G N + +Y R P+ ++ S +
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPN-----SYGR------RPIQVMMMGS-ARV 59
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
+LLL GA P + + +H AA +D + +L GA ++V++ G P+ +
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR--LDVRDAWGRLPVDL 117
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEV 375
A ++ + L G A+ ++
Sbjct: 118 AEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDI 154
Score = 116 bits (292), Expect = 3e-30
Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 40/183 (21%)
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLE 569
+ M+ + L A +E V LL G N ++ G P+ ++G+
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMMMGS-AR 58
Query: 570 VFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGET-PLHVAVSH 628
V L+ A+ N + T P+H A
Sbjct: 59 VAELLLLHGAE------------------------------PNCADPATLTRPVHDAARE 88
Query: 629 GCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPL 688
G L+ + L ++ + G + A D+ L A
Sbjct: 89 GFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR----GSNHA 143
Query: 689 YTA 691
Sbjct: 144 RID 146
Score = 114 bits (289), Expect = 8e-30
Identities = 40/195 (20%), Positives = 63/195 (32%), Gaps = 45/195 (23%)
Query: 644 DVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIK 702
+ + L A R++ V LLEA A+ N + P+ +M S + +
Sbjct: 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG--SARVAE 61
Query: 703 MLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFA 762
+L+ +GA+ N + A P+H A+ G
Sbjct: 62 LLLLHGAEPNCADPA-TLTRPVHDAAREG------------------------------- 89
Query: 763 AFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHG 822
LD L L +AGA D+ D P+ + G ++ L T G
Sbjct: 90 ----FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR------G 139
Query: 823 STALHTAAFHNQLDI 837
S A DI
Sbjct: 140 SNHARIDAAEGPSDI 154
Score = 112 bits (284), Expect = 4e-29
Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 14/166 (8%)
Query: 575 INSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGCLEA 633
+ A +M + L A A G ++ + ++ + N N G P+ V G
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARV 59
Query: 634 VKFLLNTKNIDVNHKTKDGST-ALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTA 691
+ LL + N T + A + LD + +L A A +++ D P+ A
Sbjct: 60 AELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
Query: 692 LMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIA 737
D+ + L + + G DI
Sbjct: 119 EELG-HRDVARYLRAAAGGTRGS-------NHARIDAAEGPS-DIP 155
Score = 81.4 bits (202), Expect = 4e-18
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 808 LEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKN 867
+E A ++ ++ + L TAA +++ ++ LL+ A+ NA + YG+ +
Sbjct: 1 MEPAAGSS---MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56
Query: 868 WDIVTFLLDAGSNIEKATKYRMT 890
+ LL G+ A +T
Sbjct: 57 ARVAELLLLHGAEPNCADPATLT 79
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 148 bits (376), Expect = 4e-41
Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 40/203 (19%)
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
+ G I + AD+ +
Sbjct: 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEY------------------- 44
Query: 380 VNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTC-SIKGQASL 438
T A++ + + ++ LL+ +++ D++G T L + G S
Sbjct: 45 -------------ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLG--SD 89
Query: 439 EVFHSIIEAGADIKAK-LMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYF 496
+ + EAGAD+ + + G TALH+A + +V LV+ DI E++ G T +
Sbjct: 90 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 149
Query: 497 AIKNNHLEIFNLLLKLGADVAVK 519
A + ++ G + ++
Sbjct: 150 AREILKTTPKGNPMQFGRRIGLE 172
Score = 138 bits (350), Expect = 1e-37
Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 10/174 (5%)
Query: 412 LKHININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGN 470
+ I + +G G + AD+ ++ T A +
Sbjct: 2 VNKIIGSRTAGEGAMEYLIEWKDGH--SPSWVPSSYIAADVVSE---YETPWWTAARKAD 56
Query: 471 LAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVK-MKSNFTCLHV 529
++ L++ D+++ ++ G+T + F + LL + GAD+ + M+ T LH+
Sbjct: 57 EQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 530 ACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADI 581
A + E+V L+ G + ++D +G T L A + + + I
Sbjct: 117 AAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 169
Score = 133 bits (338), Expect = 5e-36
Identities = 46/239 (19%), Positives = 72/239 (30%), Gaps = 74/239 (30%)
Query: 643 IDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIK 702
I + +G+ D ADV
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----------------------- 41
Query: 703 MLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFA 762
Y TP A+ + D L+E + D+ + N RTAL F
Sbjct: 42 ---------------SEYETPWWTAARKAD-EQALSQLLE--DRDVDAVDENGRTALLFV 83
Query: 763 AFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHG 822
A + ++ L +AGAD D D++ G
Sbjct: 84 AGLGSDKCVRLLAEAGADLDHRDMRG---------------------------------G 110
Query: 823 STALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNI 881
TALH AA + + ++++ L++ ADI ED+ G A A + + G I
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 169
Score = 133 bits (338), Expect = 5e-36
Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 35/205 (17%)
Query: 212 SQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDI 271
+G ++ + ++V + +TP +A +D
Sbjct: 12 GEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEY------------ETPWWTAARKADE 57
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNV-AGLTP 330
+ + LLE + A++++ RTAL A + S V+LL + GA+ ++ +++ GLT
Sbjct: 58 QALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGAD--LDHRDMRGGLTA 113
Query: 331 LHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPE 390
LH+A E+V+ L++ GADI ++ G T L A + G +
Sbjct: 114 LHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI---- 169
Query: 391 GERTALHMASQFGNLEMVNYLLKHI 415
G +++N L +
Sbjct: 170 ------------GLEKVINVLEGQV 182
Score = 127 bits (323), Expect = 5e-34
Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 5/170 (2%)
Query: 546 IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYA 605
I + +G + AD+ + ++P A + ++
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-EYETPWWTAARKADEQALSQL 63
Query: 606 MKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHK-TKDGSTALFFACYDKR 664
++ DV+ ++ G T L G + V+ L D++H+ + G TAL A R
Sbjct: 64 LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAGYVR 122
Query: 665 LDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNL 713
++VE L+E AD+ + D T L A +++G + L
Sbjct: 123 PEVVEALVELGADIEVEDERGLTALELAREIL-KTTPKGNPMQFGRRIGL 171
Score = 120 bits (303), Expect = 2e-31
Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 13/184 (7%)
Query: 611 VNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEI 670
+ G + G + DV + T + A +
Sbjct: 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSY-IAADVV---SEYETPWWTAARKADEQALSQ 62
Query: 671 LLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASY 729
LLE + DV+ D T L S +++L + GAD++ + +T LH A+
Sbjct: 63 LLE-DRDVDAVDENGRTALLFVAGLG-SDKCVRLLAEAGADLDHRDMR-GGLTALHMAAG 119
Query: 730 RGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDT 789
++ LVE ADI + + TAL A ++ G + L+
Sbjct: 120 YV-RPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGRR---IGLEKV 174
Query: 790 SPLL 793
+L
Sbjct: 175 INVL 178
Score = 102 bits (256), Expect = 5e-25
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 6/140 (4%)
Query: 752 NFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYN 811
+ AD + + +P ++ R+ + + LLE +
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLE-D 66
Query: 812 ADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAED-KYGKIAFHSACQAKNWDI 870
D + ++G TAL A ++LL + AD++ D + G A H A ++
Sbjct: 67 RDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125
Query: 871 VTFLLDAGSNIEKATKYRMT 890
V L++ G++IE + +T
Sbjct: 126 VEALVELGADIEVEDERGLT 145
Score = 54.4 bits (132), Expect = 1e-08
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 809 EYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNW 868
E N RT G+ AD+ +E + + +A + +
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADE 57
Query: 869 DIVTFLLDAGSNIEKATKYRMT 890
++ LL +++ + T
Sbjct: 58 QALSQLL-EDRDVDAVDENGRT 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 147 bits (373), Expect = 5e-41
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 259 DTPLHSAILNSDIELVKLLLEK-GANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAE 317
D L A D+E VK L N IE R T LH AA V +V+ L +GA+
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 318 KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFN 377
V+ ++ GL PLH AC E+ ++L+ GA +N + TPL A A+ E+
Sbjct: 68 --VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 378 YLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH 414
L+ HG D + T L + G+ ++ + L
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162
Score = 147 bits (373), Expect = 5e-41
Identities = 46/194 (23%), Positives = 67/194 (34%), Gaps = 37/194 (19%)
Query: 324 NVAGLTPLHIACRRKCLEIVKILLDK-GADINSGNDDGCTPLFCAIAQNCLEVFNYLVNH 382
N L A + +E VK L + TPL A N + V YL+ H
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 383 GCDLSVP-EGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVF 441
G D+ +G LH A +G+ E+ L+KH
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--------------------------- 97
Query: 442 HSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKN 500
GA + + T LH A G + L++H D +N G TP+ K+
Sbjct: 98 ------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KD 150
Query: 501 NHLEIFNLLLKLGA 514
+I +LL A
Sbjct: 151 GDTDIQDLLRGDAA 164
Score = 144 bits (366), Expect = 5e-40
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 7/157 (4%)
Query: 393 RTALHMASQFGNLEMVNYLLKH--ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGA 449
L A++ G++E V L +N + TPL + + V +++ GA
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN--RVSVVEYLLQHGA 66
Query: 450 DIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNL 508
D+ AK G LH AC +G+ + LVKH +N + TP++ A EI L
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 509 LLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
LL+ GAD K + T L + + ++ L
Sbjct: 127 LLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162
Score = 140 bits (357), Expect = 7e-39
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
++ + L A G +E VK L ++++ ST L FA R+ +VE L
Sbjct: 3 MGNSE-ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYR 730
L+ ADV+ D PL+ A ++ ++LVK+GA VN+ + + TPLH A+ +
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYG-HYEVAELLVKHGAVVNVADL--WKFTPLHEAAAK 118
Query: 731 GDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGA 779
G +I + L++ AD T +N + T L+ + D+ L A
Sbjct: 119 G-KYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 137 bits (349), Expect = 1e-37
Identities = 47/196 (23%), Positives = 68/196 (34%), Gaps = 39/196 (19%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH--IDINSENDLGKTPIYFAIKNNHLEI 505
GA + + L A G++ V L ++ TP++FA N + +
Sbjct: 1 GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 506 FNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAI 563
LL+ GADV K K LH AC + E+ L+ H G VN+ D TPLH A
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAA 116
Query: 564 VGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLH 623
+ E+ L+ AD +N G TPL
Sbjct: 117 AKGKYEICKLLLQHGADP------------------------------TKKNRDGNTPLD 146
Query: 624 VAVSHGCLEAVKFLLN 639
+ G + L
Sbjct: 147 LV-KDGDTDIQDLLRG 161
Score = 134 bits (339), Expect = 2e-36
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 708 GADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNN 767
GA N + L A+ G + + L + + T L+FAA N
Sbjct: 1 GAMGNSEAD-----RQLLEAAKAG-DVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR 54
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
+ ++++LL+ GAD D PL ++C G YE+ + L+++ A N+ T LH
Sbjct: 55 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLH 113
Query: 828 TAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
AA + +I KLLL++ AD +++ G + + DI L
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDA 163
Score = 132 bits (335), Expect = 9e-36
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 20/175 (11%)
Query: 212 SQGYKALCWALQEKKTDIAKLLVDK-GVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSD 270
S+ + L A + + K L V ++ TPLH A +
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-----------RQSTPLHFAAGYNR 54
Query: 271 IELVKLLLEKGANPLAI-EKSRN-RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGL 328
+ +V+ LL+ GA+ + K + LH A ++ +LL +GA VNV ++
Sbjct: 55 VSVVEYLLQHGAD---VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV--VNVADLWKF 109
Query: 329 TPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHG 383
TPLH A + EI K+LL GAD N DG TPL ++ + L
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDA 163
Score = 125 bits (318), Expect = 2e-33
Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 39/200 (19%)
Query: 513 GADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNL--QDNKGCTPLHCAIVGNQLEV 570
GA + L A + +E V L + VN + + TPLH A N++ V
Sbjct: 1 GAMGNSE---ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 571 FNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGC 630
+L+ AD+ + ++ G PLH A S+G
Sbjct: 58 VEYLLQHGADV------------------------------HAKDKGGLVPLHNACSYGH 87
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLY 689
E + L+ VN T L A + ++ ++LL+ AD + TPL
Sbjct: 88 YEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146
Query: 690 TALMKDPSLDIIKMLVKYGA 709
KD DI +L A
Sbjct: 147 LV--KDGDTDIQDLLRGDAA 164
Score = 90.5 bits (226), Expect = 3e-21
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 778 GADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYN-ADTNLRTIKHGSTALHTAAFHNQLD 836
GA + + LL + + G E V L + ST LH AA +N++
Sbjct: 1 GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVS 56
Query: 837 IIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
+++ LL++ AD++A+DK G + H+AC ++++ L+ G+ + A ++ T
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110
Score = 63.6 bits (156), Expect = 8e-12
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDK-GVPLNYSRRIIETDTPLHSAILNSDIE 272
G L A ++A+LLV G +N+ D TPLH A E
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK------------FTPLHEAAAKGKYE 122
Query: 273 LVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGA 316
+ KLLL+ GA+P + N T L + DI LL A
Sbjct: 123 ICKLLLQHGADPTKKNRDGN-TPLDLVKD-GDTDIQDLLRGDAA 164
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 150 bits (380), Expect = 1e-39
Identities = 49/399 (12%), Positives = 133/399 (33%), Gaps = 50/399 (12%)
Query: 166 VTVSDKKETSKNPQSSDSNSDKALEEEL-TNIFKKFDLLEHPEYLSHSQGYKALCWALQE 224
+T+ + + +PQ + + L N+F+ F ++ YK
Sbjct: 4 LTIHNIENYENDPQL------RLIPWILWENLFQHFISANELSLMT--LSYKEAIHIFLP 55
Query: 225 KKTDI---AKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSD---IELVKLLL 278
++ +LL N K + + ++ I+++ A + ++ + LLL
Sbjct: 56 GTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLL 115
Query: 279 EKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRK 338
I+ N A +AA + ++ L + + + + +A
Sbjct: 116 TSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG 174
Query: 339 CLEIVKILLDKGADINSGN---DDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTA 395
L ++ L + + ++ + A+ + V N+L++ L+ A
Sbjct: 175 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA------YA 228
Query: 396 LHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKL 455
++G + ++ +H+N K+ ++ + ++ ++
Sbjct: 229 EIHEFEYGEKYVNPFIARHVNRL---KEMHDAFK-----LSNPDGVFDLVTKSECLQ--- 277
Query: 456 MDGTTALHLACYFGN---LAMVNYLV------KHIDINSENDLGKTPIYFAIKNNHLEIF 506
G L + L + +L+ + + A++ +
Sbjct: 278 --GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 335
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
LLL + + +A+ +N+ ++ +++ + L H
Sbjct: 336 ALLLSIPSVLALTKANNY---YINETGGRLDLRAVALEH 371
Score = 141 bits (357), Expect = 1e-36
Identities = 52/360 (14%), Positives = 105/360 (29%), Gaps = 40/360 (11%)
Query: 368 IAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTP 427
+ + E + + ++ E+ + + + L K
Sbjct: 42 MTLSYKEAIHIFLPGTKNM-----EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVIC 96
Query: 428 LTCSIKGQAS-LEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH---IDI 483
+I G +S L+ ++ + +K + A LA G+L ++N L + +
Sbjct: 97 FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156
Query: 484 NSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKM--KSNFTCLHVAC-EFASIEMVS 540
A +N HL + N L +L A M N+ A +++
Sbjct: 157 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 216
Query: 541 FLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNM 599
FLL + + + V + + L+ G
Sbjct: 217 FLLDCPVMLAYAEIHEFEYGE-------KYVNPFIARHVNRLKE--MHDAFKLSNPDGVF 267
Query: 600 DMITYAMKYFDVNIENDIGETPLHVAVSHGC---LEAVKFLLNTKNI----DVNHKTKDG 652
D++T E G L + L+ ++FLL+ I D
Sbjct: 268 DLVT--------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 319
Query: 653 STALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVN 712
+ L A +LL + + L Y LD+ + +++ +
Sbjct: 320 NELLRLALRLGNQGACALLLSIPSVLALTKA--NNYYINE-TGGRLDLRAVALEHHHHHH 376
Score = 130 bits (327), Expect = 1e-32
Identities = 45/357 (12%), Positives = 96/357 (26%), Gaps = 46/357 (12%)
Query: 402 FGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTA 461
E ++ L N + L + + + +++ + G + A
Sbjct: 44 LSYKEAIHIFLPGTK-NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICF---VA 99
Query: 462 LHLACYFGNLAMVNYLV-KHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKM 520
C L + L+ + A +N HL + N L +L + M
Sbjct: 100 AITGC-SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158
Query: 521 KS--NFTCLHVACEFASIEMVSFLLSH----IGVNLQDNKGCTPLHCAIVGNQLEVFNHL 574
N+ +A E + +++ L +Q A+ V N L
Sbjct: 159 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218
Query: 575 INSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAV 634
++ + G + + ++ + E ++ G + V
Sbjct: 219 LDCPVML-----AYAEIHEFEYGEKYVNPFIARHVNRLKEMH---DAFKLSNPDGVFDLV 270
Query: 635 KFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL--------LEANADVNLGDGT-Y 685
+ G L L++ + ++A A G
Sbjct: 271 T----------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 320
Query: 686 TPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
L AL + +L+ + + LT + G D+ +E
Sbjct: 321 ELLRLALRLG-NQGACALLLSIPSVLALTKA-----NNYYINETGGRL-DLRAVALE 370
Score = 128 bits (323), Expect = 4e-32
Identities = 42/332 (12%), Positives = 84/332 (25%), Gaps = 43/332 (12%)
Query: 569 EVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSH 628
E + + ++ + L L A N + I+++ VA
Sbjct: 48 EAIHIFLPGTKNME--QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSE---VICFVAAIT 102
Query: 629 GC---LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT- 684
GC L+ + LL + V + A A + L ++ L E +
Sbjct: 103 GCSSALDTLCLLLT-SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161
Query: 685 --YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
Y A L ++ L + +A+ +++ FL+
Sbjct: 162 ENYHAFRLAAENG-HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL- 219
Query: 743 ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYE 802
+C + A + F+ + + S G+++
Sbjct: 220 DCPVMLA-------YAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFD 268
Query: 803 IVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLL--------LKYNADINAEDKY 854
+V G L N ++ + +K A
Sbjct: 269 LVTKS----------ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD 318
Query: 855 GKIAFHSACQAKNWDIVTFLLDAGSNIEKATK 886
A + N LL S +
Sbjct: 319 ANELLRLALRLGNQGACALLLSIPSVLALTKA 350
Score = 114 bits (286), Expect = 2e-27
Identities = 45/342 (13%), Positives = 100/342 (29%), Gaps = 38/342 (11%)
Query: 532 EFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLH 591
+ E + L N++ + L+ A + S+A K++
Sbjct: 43 TLSYKEAIHIFLPG-TKNMEQVRQLLCLYYA----HYNRNAKQLWSDAHKKGIKSEVICF 97
Query: 592 LACATGNMDMITYAMKYF-----DVNIENDIGETPLHVAVSHGCLEAVKFLLNTK-NIDV 645
+A TG + + V + +A +G L + L +
Sbjct: 98 VAAITGCSSALDT-LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156
Query: 646 NHKTKDGSTALFFACYDKRLDLVEILLEANADVNL----GDGTYTPLYTALMKDPSLDII 701
+ A A + L ++ L E + Y + A+ + ++I
Sbjct: 157 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG-HHNVI 215
Query: 702 KMLVKYGADVNLTNEACYYMTPLHYASYRG-------DCNDIARFLVEECNADITLRN-- 752
L+ + + + + + +D + + D+ ++
Sbjct: 216 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC 275
Query: 753 FNNRTALNFAAFGNN---LDLLKFL-----LKAGADPDILDLKDTSPLLSSCRQGLYEIV 804
L N+ LD ++FL +KA A + L + R G
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 335
Query: 805 DTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNA 846
LL + L + + +LD+ + L+++
Sbjct: 336 ALLLSIPSVLALTK----ANNYYINETGGRLDLRAVALEHHH 373
Score = 90.4 bits (224), Expect = 2e-19
Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 13/202 (6%)
Query: 690 TALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADIT 749
+LM + I + + ++ E + L+YA Y N A+ L + +
Sbjct: 39 LSLMTLSYKEAIHIFLPGTKNM----EQVRQLLCLYYAHY----NRNAKQLWSDAHKKGI 90
Query: 750 LRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLE 809
A + LD L LL + ++ ++ + G +++ L E
Sbjct: 91 KSEVICFVAA-ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149
Query: 810 YNADTNLRTIK-HGSTALHTAAFHNQLDIIKLLLKYNADINAED--KYGKIAFHSACQAK 866
+ I+ A AA + L ++ L + AF A +
Sbjct: 150 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209
Query: 867 N-WDIVTFLLDAGSNIEKATKY 887
+++ FLLD + A +
Sbjct: 210 GHHNVINFLLDCPVMLAYAEIH 231
Score = 50.7 bits (121), Expect = 1e-06
Identities = 17/153 (11%), Positives = 44/153 (28%), Gaps = 23/153 (15%)
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKGV---PLNYSRRIIETD------TPLHSAI 266
A + + + + L + + ++ L + I
Sbjct: 227 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286
Query: 267 LNSD---IELVKLL-----LEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
+D ++ ++ L ++ A I N L +A + + LL +
Sbjct: 287 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN-ELLRLALRLGNQGACALLLSIPSVL 345
Query: 319 SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
++ N +I L++ + L+
Sbjct: 346 ALTKAN-----NYYINETGGRLDLRAVALEHHH 373
Score = 33.8 bits (77), Expect = 0.32
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 14/71 (19%)
Query: 213 QGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIE 272
+ L AL+ LL+ L L + ++
Sbjct: 318 DANELLRLALRLGNQGACALLLSIPSVLALTKA--------------NNYYINETGGRLD 363
Query: 273 LVKLLLEKGAN 283
L + LE +
Sbjct: 364 LRAVALEHHHH 374
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 145 bits (368), Expect = 3e-39
Identities = 49/270 (18%), Positives = 89/270 (32%), Gaps = 58/270 (21%)
Query: 260 TPLHSAILNSDIE----LVKLLLEKGANPLAIEKSRN---RTALHVAAIVES---VDIVK 309
L + + L+ LL E +T L A + S D +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 310 LLFDYGAEK---------SVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDG 360
+L D + G T LHIA R+C V++L++KGAD++
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH------ 120
Query: 361 CTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKH----IN 416
AQ F G GE L +A+ +V+YL ++ +
Sbjct: 121 --------AQARGRFFQPKDEGGYFY---FGE-LPLSLAACTNQPHIVHYLTENGHKQAD 168
Query: 417 INHQDKDGWTPLTCSIKGQ--------ASLEVFHSIIEAGADIKAKLM-------DGTTA 461
+ QD G T L + +++ ++ A + DG +
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228
Query: 462 LHLACYFGNLAMVNYLVKH--IDINSENDL 489
L +A G + + ++++ D + +
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIADAAAHHHH 258
Score = 117 bits (295), Expect = 1e-29
Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 60/284 (21%)
Query: 393 RTALHMASQFGNLE----MVNYLLKH-ININHQD----KDGWTPLTCSIKGQASLEVFHS 443
R L G+ + ++++LL H + ++ G T L
Sbjct: 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCL-------------P- 51
Query: 444 IIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKHIDINSENDLGKTPIYFAIKNNHL 503
+A ++ A D T + L M ++ + G+T ++ AI+
Sbjct: 52 --KALLNLSAGRND-TIPILLDIAEKTGNMREFI--NSPFRDVYYRGQTALHIAIERRCK 106
Query: 504 EIFNLLLKLGADVAVKMKSNF--------------TCLHVACEFASIEMVSFLLSHIG-- 547
LL++ GADV + + F L +A +V +L +
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166
Query: 548 --VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYA 605
+ QD++G T LH + N N+ MY L + CA
Sbjct: 167 ADLRRQDSRGNTVLHALVAIAD----NTRENTKFVTKMYDL---LLIKCAKLF------- 212
Query: 606 MKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKT 649
+ N+ G +PL +A G + + ++ + D
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256
Score = 115 bits (290), Expect = 8e-29
Identities = 45/242 (18%), Positives = 78/242 (32%), Gaps = 46/242 (19%)
Query: 207 EYLSHSQGYKALCWAL---QEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLH 263
E+ S G L AL + D +L+D + + + + T LH
Sbjct: 39 EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALH 98
Query: 264 SAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQ 323
AI V+LL+EKGA+ A + R + K
Sbjct: 99 IAIERRCKHYVELLVEKGADVHAQARGR----------------------FFQPKDEGGY 136
Query: 324 NVAGLTPLHIACRRKCLEIVKILLDKG---ADINSGNDDGCTPLFCAIA---------QN 371
G PL +A IV L + G AD+ + G T L +A +
Sbjct: 137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKF 196
Query: 372 CLEVFNYLVNHGCDLSVPEGE--------RTALHMASQFGNLEMVNYLLKH-ININHQDK 422
++++ L+ L + L MA++ G + + ++++ I
Sbjct: 197 VTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256
Query: 423 DG 424
Sbjct: 257 HH 258
Score = 109 bits (275), Expect = 7e-27
Identities = 47/300 (15%), Positives = 89/300 (29%), Gaps = 76/300 (25%)
Query: 586 NDSPLHLACATGNMDMITYAMKYF-----DVN----IENDIGETPLHVAV---SHGCLEA 633
N L + G+ D + + + + E G+T L A+ S G +
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 634 VKFLLN----------TKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDG 683
+ LL+ N G TAL A + VE+L+E ADV+
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH---- 120
Query: 684 TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE- 742
+ ++ + + PL A+ I +L E
Sbjct: 121 -----------------AQARGRFFQPKDEGGYFYFGELPLSLAACTNQP-HIVHYLTEN 162
Query: 743 -ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLY 801
AD+ ++ T L+ + + ++ + +
Sbjct: 163 GHKQADLRRQDSRGNTVLHALVAIAD-----------------NTRENTKFV-------T 198
Query: 802 EIVDTLLEYNADTNLRTI------KHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYG 855
++ D LL A T G + L AA ++ I + +++ A +
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258
Score = 99.9 bits (249), Expect = 2e-23
Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 51/253 (20%)
Query: 686 TPLYTALMKDPS---LDIIKMLVKYGADVNLTNEACYYM--TPLHYASY--RGDCNDIAR 738
L+ + + ++ L+ + + T L A ND
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 739 FLV----------EECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKD 788
L+ E N+ + +TAL+ A ++ L++ GAD
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 789 TS--------------PLLSSCRQGLYEIVDTLLE---YNADTNLRTIKHGSTALHTAAF 831
PL + IV L E AD + G+T LH
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD-SRGNTVLHALVA 185
Query: 832 HN---------QLDIIKLLLKYNADINAE-------DKYGKIAFHSACQAKNWDIVTFLL 875
+ LLL A + + + G A + I ++
Sbjct: 186 IADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245
Query: 876 DAGSNIEKATKYR 888
A +
Sbjct: 246 RREIADAAAHHHH 258
Score = 80.6 bits (199), Expect = 7e-17
Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 37/178 (20%)
Query: 750 LRNFNNRTALNFAAFGNN---LDLLKFLLKAGADPDILDLKDTS----PL---LSSCRQG 799
++ FN + + G+ LL FLL + ++ S L L + G
Sbjct: 1 MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAG 60
Query: 800 LYEIVDTLLEYNADTNLRTI----------KHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+ + LL+ T G TALH A ++LL++ AD++
Sbjct: 61 RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120
Query: 850 AEDK--------------YGKIAFHSACQAKNWDIVTFLLDAGS---NIEKATKYRMT 890
A+ + +G++ A IV +L + G ++ + T
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNT 178
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 137 bits (347), Expect = 7e-38
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 9/140 (6%)
Query: 315 GAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLE 374
+++ + L A R +E V+ LL+ GAD N+ N G P+ +
Sbjct: 2 SPG--IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQ 58
Query: 375 VFNYLVNHGCDLSV--PEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC- 430
V L+ HG + + P +H A++ G L+ + L + ++ D G P+
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
Query: 431 SIKGQASLEVFHSIIEAGAD 450
+G ++ + A D
Sbjct: 119 EEQG--HRDIARYLHAATGD 136
Score = 128 bits (325), Expect = 7e-35
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEK 318
D L +A +E V+ LLE GA+P A+ + R + V + S + +LL +GAE
Sbjct: 13 DAGLATAAARGQVETVRQLLEAGADPNALNRF-GRRPIQVMMM-GSAQVAELLLLHGAE- 69
Query: 319 SVNVQNVAGLT-PLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFN 377
N + A LT P+H A R L+ + +L GA ++ + G P+ A Q ++
Sbjct: 70 -PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128
Query: 378 YLVNHGCD 385
YL D
Sbjct: 129 YLHAATGD 136
Score = 125 bits (316), Expect = 1e-33
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 290 SRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDK 349
+ L AA V+ V+ L + GA+ N N G P+ + ++ ++LL
Sbjct: 10 GSSDAGLATAAARGQVETVRQLLEAGAD--PNALNRFGRRPIQVMM-MGSAQVAELLLLH 66
Query: 350 GADINSGNDDGCT-PLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEM 407
GA+ N + T P+ A + L+ L G L V + R + +A + G+ ++
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 408 VNYLLKH 414
YL
Sbjct: 127 ARYLHAA 133
Score = 124 bits (315), Expect = 2e-33
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 6/138 (4%)
Query: 447 AGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEI 505
I L A G + V L++ D N+ N G+ PI + ++
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQV 59
Query: 506 FNLLLKLGADVAVKMKSNFTC-LHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCA 562
LLL GA+ + T +H A ++ + L G +++ D G P+ A
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLA 118
Query: 563 IVGNQLEVFNHLINSNAD 580
++ +L + D
Sbjct: 119 EEQGHRDIARYLHAATGD 136
Score = 123 bits (312), Expect = 4e-33
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
+++ + L A + G +E V+ LL D N + G + + E
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMMMG-SAQVAE 61
Query: 670 ILLEANADVNLGD--GTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYA 727
+LL A+ N D P++ A + LD + +L + GA +++ + + P+ A
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREG-FLDTLVVLHRAGARLDVCDA--WGRLPVDLA 118
Query: 728 SYRGDCNDIARFLVE 742
+G DIAR+L
Sbjct: 119 EEQGHR-DIARYLHA 132
Score = 122 bits (308), Expect = 1e-32
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 644 DVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIK 702
++ L A +++ V LLEA AD N + P+ +M S + +
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG--SAQVAE 61
Query: 703 MLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFA 762
+L+ +GA+ N + A P+H A+ G D L A + + + R ++ A
Sbjct: 62 LLLLHGAEPNCADPA-TLTRPVHDAAREG-FLDTLVVLHRA-GARLDVCDAWGRLPVDLA 118
Query: 763 AFGNNLDLLKFLLKAGAD 780
+ D+ ++L A D
Sbjct: 119 EEQGHRDIARYLHAATGD 136
Score = 120 bits (304), Expect = 4e-32
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 745 NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIV 804
+ I + ++ L AA ++ ++ LL+AGADP+ L+ P+ G ++
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 805 DTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQ 864
+ LL + A+ N + +H AA LD + +L + A ++ D +G++ A +
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 865 AKNWDIVTFLLDAGSN 880
+ DI +L A +
Sbjct: 121 QGHRDIARYLHAATGD 136
Score = 115 bits (291), Expect = 3e-30
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 6/133 (4%)
Query: 416 NINHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMV 474
I+ L + +GQ +E ++EAGAD A G + + G+ +
Sbjct: 4 GIHMLGGSSDAGLATAAARGQ--VETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 475 NYLVKH-IDINSENDLGKT-PIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACE 532
L+ H + N + T P++ A + L+ +L + GA + V + +A E
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 533 FASIEMVSFLLSH 545
++ +L +
Sbjct: 121 QGHRDIARYLHAA 133
Score = 112 bits (282), Expect = 4e-29
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 14/139 (10%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
L A + + + L++ G N +++ P+ ++ S ++
Sbjct: 12 SDAGLATAAARGQVETVRQLLEAGADPNALNR-----------FGRRPIQVMMMGS-AQV 59
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
+LLL GA P + + +H AA +D + +L GA ++V + G P+ +
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR--LDVCDAWGRLPVDL 117
Query: 334 ACRRKCLEIVKILLDKGAD 352
A + +I + L D
Sbjct: 118 AEEQGHRDIARYLHAATGD 136
Score = 109 bits (276), Expect = 3e-28
Identities = 30/165 (18%), Positives = 50/165 (30%), Gaps = 35/165 (21%)
Query: 548 VNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMK 607
+++ L A Q+E L+ + A
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGA---------------------------- 36
Query: 608 YFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGST-ALFFACYDKRLD 666
D N N G P+ V G + + LL + N T + A + LD
Sbjct: 37 --DPNALNRFGRRPIQVM-MMGSAQVAELLLL-HGAEPNCADPATLTRPVHDAAREGFLD 92
Query: 667 LVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGAD 710
+ +L A A +++ D P+ A + DI + L D
Sbjct: 93 TLVVLHRAGARLDVCDAWGRLPVDLAEEQG-HRDIARYLHAATGD 136
Score = 96.4 bits (241), Expect = 2e-23
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 3/115 (2%)
Query: 777 AGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLD 836
+L + L ++ +G E V LLE AD N + G +
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN-RFGRRPIQVMM-MGSAQ 58
Query: 837 IIKLLLKYNADINAEDKYGK-IAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
+ +LLL + A+ N D H A + D + L AG+ ++ +
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 135 bits (343), Expect = 2e-37
Identities = 56/126 (44%), Positives = 77/126 (61%), Gaps = 7/126 (5%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAE 317
TPLH A N +E+VKLLLE GA+ + RT LH+AA +++VKLL + GA+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 318 KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFN 377
VN ++ G TPLH+A R LE+VK+LL+ GAD+N+ + +G TPL A LEV
Sbjct: 61 --VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 378 YLVNHG 383
L+ G
Sbjct: 119 LLLEAG 124
Score = 134 bits (340), Expect = 4e-37
Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 36/156 (23%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G TPLH+A R LE+VK+LL+ GAD+N+ + +G TP
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP----------------------- 38
Query: 387 SVPEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSI 444
LH+A++ G+LE+V LL+ ++N +DK+G TPL + G LEV +
Sbjct: 39 ---------LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLL 87
Query: 445 IEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH 480
+EAGAD+ AK +G T LHLA G+L +V L++
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 132 bits (336), Expect = 2e-36
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 3/123 (2%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
RT LH+AA +++VKLL + GA+ VN ++ G TPLH+A R LE+VK+LL+ GAD
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYL 411
+N+ + +G TPL A LEV L+ G D++ + RT LH+A++ G+LE+V L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 412 LKH 414
L+
Sbjct: 121 LEA 123
Score = 122 bits (309), Expect = 8e-33
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+G T LHLA G+L +V L++ D+N+++ G+TP++ A +N HLE+ LLL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHL 574
V K K+ T LH+A +E+V LL VN +D G TPLH A LEV L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 575 INSNA 579
+ + A
Sbjct: 121 LEAGA 125
Score = 119 bits (302), Expect = 6e-32
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 34/154 (22%)
Query: 393 RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
RT LH+A++ G+LE+V LL+ GAD+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA---------------------------------GADVN 29
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
AK +G T LHLA G+L +V L++ D+N+++ G+TP++ A +N HLE+ LLL+
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
GADV K K+ T LH+A +E+V LL
Sbjct: 90 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 114 bits (289), Expect = 3e-30
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 6/126 (4%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G TPLH+A +G LE VK LL DVN K K+G T L A + L++V++LLEA AD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 678 VNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDI 736
VN D TPL+ A L+++K+L++ GADVN ++ TPLH A+ G ++
Sbjct: 61 VNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK--NGRTPLHLAARNG-HLEV 116
Query: 737 ARFLVE 742
+ L+E
Sbjct: 117 VKLLLE 122
Score = 110 bits (278), Expect = 1e-28
Identities = 59/187 (31%), Positives = 79/187 (42%), Gaps = 63/187 (33%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVN 549
G+TP++ A +N HLE+ LLL+ GADV N
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV--------------------------------N 29
Query: 550 LQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYF 609
+D G TPLH A LEV L+ + AD+
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---------------------------- 61
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
N ++ G TPLH+A +G LE VK LL DVN K K+G T L A + L++V+
Sbjct: 62 --NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 670 ILLEANA 676
+LLEA A
Sbjct: 119 LLLEAGA 125
Score = 110 bits (277), Expect = 1e-28
Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
N RT L+ AA +L+++K LL+AGAD + D +PL + R G E+V LLE AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
N + K+G T LH AA + L+++KLLL+ AD+NA+DK G+ H A + + ++V
Sbjct: 61 VNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 874 LLDAG 878
LL+AG
Sbjct: 120 LLEAG 124
Score = 108 bits (274), Expect = 4e-28
Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 18/140 (12%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L A + ++ KLL++ G +N DK TPLH A N +E+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----------NGRTPLHLAARNGHLEV 50
Query: 274 VKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
VKLLLE GA+ + RT LH+AA +++VKLL + GA+ VN ++ G TPL
Sbjct: 51 VKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPL 105
Query: 332 HIACRRKCLEIVKILLDKGA 351
H+A R LE+VK+LL+ GA
Sbjct: 106 HLAARNGHLEVVKLLLEAGA 125
Score = 107 bits (269), Expect = 2e-27
Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 35/157 (22%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIE 614
G TPLH A LEV L+ + AD+ N +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV------------------------------NAK 31
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+ G TPLH+A +G LE VK LL DVN K K+G T L A + L++V++LLEA
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Query: 675 NADVNLGD--GTYTPLYTALMKDPSLDIIKMLVKYGA 709
ADVN D G TPL+ A L+++K+L++ GA
Sbjct: 91 GADVNAKDKNG-RTPLHLAARNG-HLEVVKLLLEAGA 125
Score = 106 bits (267), Expect = 3e-27
Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA 709
+G T L A + L++V++LLEA ADVN D TPL+ A L+++K+L++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGA 59
Query: 710 DVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLD 769
DVN ++ TPLH A+ G ++ + L+E AD+ ++ N RT L+ AA +L+
Sbjct: 60 DVNAKDK--NGRTPLHLAARNG-HLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLE 115
Query: 770 LLKFLLKAGA 779
++K LL+AGA
Sbjct: 116 VVKLLLEAGA 125
Score = 78.9 bits (196), Expect = 1e-17
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
+G T LH AA + L+++KLLL+ AD+NA+DK G+ H A + + ++V LL+AG++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 881 IEKATKYRMT 890
+ K T
Sbjct: 61 VNAKDKNGRT 70
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 134 bits (340), Expect = 6e-37
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Query: 281 GANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCL 340
G +P R T LH+A+I + V+ L G++ NV++ AG TPLH AC L
Sbjct: 1 GIDPFT--NHRGETLLHIASIKGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHL 56
Query: 341 EIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMA 399
++V++LL A +N+ +PL A +++ L+++G + +
Sbjct: 57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116
Query: 400 SQFGNLEMVNYLLKHININ 418
++ K+ + +
Sbjct: 117 DDESMKSLLLLPEKNESSS 135
Score = 128 bits (325), Expect = 7e-35
Identities = 38/192 (19%), Positives = 60/192 (31%), Gaps = 66/192 (34%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G T LHIA + + V+ LL G+D N + G TPL
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL---------------------- 47
Query: 387 SVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIE 446
H A G+L++V LL+H
Sbjct: 48 ----------HEACNHGHLKVVELLLQH-------------------------------- 65
Query: 447 AGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEI 505
A + + LH A G++ +V L+ + N+ N G P+ + + +
Sbjct: 66 -KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL 124
Query: 506 FNLLLKLGADVA 517
L K + A
Sbjct: 125 LLLPEKNESSSA 136
Score = 121 bits (306), Expect = 2e-32
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G D G T LH+A G++ V YL+++ D N ++ G TP++ A + HL++
Sbjct: 1 GIDPFTN-HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIV 564
LLL+ A V N + LH A + +++V LLS+ G N + G P+
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDD 118
Query: 565 GNQLEVFNHLINSNADIT 582
+ + N +
Sbjct: 119 ESMKSLLLLPE-KNESSS 135
Score = 117 bits (295), Expect = 8e-31
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 746 ADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD 805
D N T L+ A+ ++ +++LL+ G+DP++ D +PL +C G ++V+
Sbjct: 2 IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 806 TLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQA 865
LL++ A N + LH AA + +DI+KLLL Y A NA + +G
Sbjct: 61 LLLQHKALVNTTG-YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 866 KNWDIVTFLLDAGSN 880
++ S+
Sbjct: 120 SMKSLLLLPEKNESS 134
Score = 116 bits (293), Expect = 1e-30
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
D + GET LH+A G + +V++LL D N K G T L AC L +VE
Sbjct: 3 DPFTNHR-GETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 670 ILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYAS 728
+LL+ A VN +PL+ A +DI+K+L+ YGA N N + + P+ Y
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNG-HVDIVKLLLSYGASRNAVNI--FGLRPVDYTD 117
Query: 729 YRGDCNDIARFLVEECNADIT 749
+ + N +
Sbjct: 118 DES-MKSLLLLPEK--NESSS 135
Score = 112 bits (283), Expect = 3e-29
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 708 GADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNN 767
G D TN T LH AS +GD +L++ +D +++ T L+ A +
Sbjct: 1 GIDPF-TNH--RGETLLHIASIKGD-IPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGH 55
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALH 827
L +++ LL+ A + ++ SPL + + G +IV LL Y A N G +
Sbjct: 56 LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN-IFGLRPVD 114
Query: 828 TAAFHNQLDIIKLLLKYNADINA 850
+ ++ L K N +A
Sbjct: 115 YTDDESMKSLLLLPEK-NESSSA 136
Score = 112 bits (282), Expect = 4e-29
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 415 ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAM 473
I+ + G T L SIKG + +++ G+D K G T LH AC G+L +
Sbjct: 2 IDPF-TNHRGETLLHIASIKG--DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKV 58
Query: 474 VNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACE 532
V L++H +N+ +P++ A KN H++I LLL GA + +
Sbjct: 59 VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD 118
Query: 533 FASIEMVSFLLSH 545
+ ++ +
Sbjct: 119 ESMKSLLLLPEKN 131
Score = 100 bits (253), Expect = 4e-25
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 15/142 (10%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L A + + L+ G N+ D TPLH A + +++
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG-----------WTPLHEACNHGHLKV 58
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHI 333
V+LLL+ A N + LH AA VDIVKLL YGA S N N+ GL P+
Sbjct: 59 VELLLQHKALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGA--SRNAVNIFGLRPVDY 115
Query: 334 ACRRKCLEIVKILLDKGADINS 355
++ L +K ++
Sbjct: 116 TDDESMKSLLL-LPEKNESSSA 136
Score = 80.9 bits (201), Expect = 4e-18
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 812 ADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIV 871
D T G T LH A+ + ++ LL+ +D N +D G H AC + +V
Sbjct: 2 IDPF--TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 872 TFLLDAGSNIEKATKYRMT 890
LL + + +
Sbjct: 60 ELLLQHKALVNTTGYQNDS 78
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 132 bits (335), Expect = 1e-35
Identities = 31/181 (17%), Positives = 53/181 (29%), Gaps = 19/181 (10%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAE 317
+ +A + E L EKG N L I L + GA+
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 318 KSVNVQNVAGLTPLHIACRR------KCLEIVKILLDKGADINSGNDDGCTPLFCAIAQN 371
+ + G T + E+ KI L+KGADI + +F I
Sbjct: 68 --IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125
Query: 372 CLEVFN-------YLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLKH-ININHQDK 422
++ G L + + TAL + + + + N ++
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Query: 423 D 423
Sbjct: 186 S 186
Score = 130 bits (330), Expect = 5e-35
Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 35/206 (16%)
Query: 292 NRTALHVAAIVESVDIVKLLFDYGAEKSV-NVQNVAGLTPLHIACRRKCLEIVKILLDKG 350
+ AA++ + + LF+ G E +++ L +I L++KG
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 351 ADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNY 410
ADI S +G T F ++ G E+
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDI--------------------------TGTTELCKI 99
Query: 411 LLKH-ININHQDKDGWTPLTCSIKG------QASLEVFHSIIEAGADIKAKLMDGTTALH 463
L+ +I K + +I + ++G + K G TAL
Sbjct: 100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159
Query: 464 LACYFGNLAMVNYLVKH-IDINSEND 488
+ + + N + +
Sbjct: 160 FVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 129 bits (325), Expect = 2e-34
Identities = 23/205 (11%), Positives = 53/205 (25%), Gaps = 43/205 (20%)
Query: 329 TPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV 388
+ A E L +KG + + L+
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILY----------------------- 43
Query: 389 PEGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPL-----TCSIKGQASLEVFH 442
L + ++ +L+ +I + K+G T + E+
Sbjct: 44 -----DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK 98
Query: 443 SIIEAGADIKAKLMDGTTALHLACYFGNL------AMVNYLVKH--IDINSENDLGKTPI 494
+E GADI A + + + + + + + ++ G T +
Sbjct: 99 IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158
Query: 495 YFAIKNNHLEIFNLLLKLGADVAVK 519
F + ++ +K
Sbjct: 159 EFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 128 bits (323), Expect = 4e-34
Identities = 28/215 (13%), Positives = 56/215 (26%), Gaps = 40/215 (18%)
Query: 648 KTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALM---KDPSLDIIKML 704
+ A + L E + LY L + I L
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61
Query: 705 VKYGADVNLTNEACYYMTPLHYASYRG-----DCNDIARFLVEECNADITLRNFNNRTAL 759
+ GAD+ + T G ++ + +E+ ADIT + +
Sbjct: 62 INKGADIKSRTK--EGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVV 118
Query: 760 NFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLL-EYNADTNLRT 818
F +D + + + + + ++
Sbjct: 119 FKNIFNYFVDENE---------------------------MIPLYKLIFSQSGLQLLIKD 151
Query: 819 IKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDK 853
K G TAL + +K++ Y N ++
Sbjct: 152 -KWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 126 bits (319), Expect = 2e-33
Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 15/181 (8%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNT--KNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
+ A G E L ++ + K+ L + R + L+
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 676 ADVNLGDGT-YTPLYTALMK-----DPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASY 729
AD+ T + + ++ K+ ++ GAD+ + Y + +
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK--PYKIVVFKNIF 123
Query: 730 RG-----DCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDIL 784
+ + + + + + +++ TAL F LK + ++
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Query: 785 D 785
+
Sbjct: 184 E 184
Score = 124 bits (313), Expect = 1e-32
Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 46/209 (22%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAV---KMKSNFTCLHVACEFASIEMVSFLLSH- 545
+ A E F L + G + K + L + A ++ FL++
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 546 IGVNLQDNKGCTPLHCAI------VGNQLEVFNHLINSNADITMYKNDSPLHLACATGNM 599
+ + +G T + E+ + ADI
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI------------------ 107
Query: 600 DMITYAMKYFDVNIENDIGETPLHVAVSHGCLEA------VKFLLNTKNIDVNHKTKDGS 653
+ + + + ++ K + + + + K K G
Sbjct: 108 ------------TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL 155
Query: 654 TALFFACYDKRLDLVEILLEANADVNLGD 682
TAL F ++ ++++ + NL +
Sbjct: 156 TALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 121 bits (305), Expect = 1e-31
Identities = 22/186 (11%), Positives = 53/186 (28%), Gaps = 24/186 (12%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
Y+ + A + L +KG + Y L + + ++
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILY--------DVLRNNNDEARYKI 57
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAA------IVESVDIVKLLFDYGAEKSVNVQNVAG 327
L+ KGA+ + K T I + ++ K+ + GA+ +
Sbjct: 58 SMFLINKGADIKSRTKE-GTTLFFPLFQGGGNDITGTTELCKIFLEKGAD--ITALYKPY 114
Query: 328 LTPLHIACRR------KCLEIVKILLDK-GADINSGNDDGCTPLFCAIAQNCLEVFNYLV 380
+ + + + K++ + G + + G T L +
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174
Query: 381 NHGCDL 386
++
Sbjct: 175 DYIKKY 180
Score = 110 bits (277), Expect = 7e-28
Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 27/159 (16%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILN----- 268
Y L E + I+ L++KG + K E T
Sbjct: 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTK-----------EGTTLFFPLFQGGGNDI 90
Query: 269 -SDIELVKLLLEKGANPLAIEKSRNRTALHVAA------IVESVDIVKLLFD-YGAEKSV 320
EL K+ LEKGA+ A+ K + + E + + KL+F G + +
Sbjct: 91 TGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ--L 147
Query: 321 NVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDD 359
+++ GLT L R + +K++ D N +
Sbjct: 148 LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186
Score = 79.7 bits (197), Expect = 4e-17
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 12/113 (10%)
Query: 788 DTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHN----QLDIIKLLLK 843
+ + ++ G YE L E + S L+ +N + I L+
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKES--VLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 844 YNADINAEDKYGKIAFHSACQAKNWDIVT------FLLDAGSNIEKATKYRMT 890
ADI + K G F Q DI L+ G++I K
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI 116
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 130 bits (329), Expect = 2e-35
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 280 KGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKC 339
+G++ S L AA D V++L GA+ VN ++ GLTPL++A
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD--VNAKDEYGLTPLYLATAHGH 59
Query: 340 LEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL-SVPEGERTALHM 398
LEIV++LL GAD+N+ + G TPL A LE+ L+ HG D+ + + +TA +
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
Query: 399 ASQFGNLEMVNYLLKH 414
+ GN ++ L K
Sbjct: 120 SIGNGNEDLAEILQKL 135
Score = 125 bits (318), Expect = 7e-34
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
L A + V++L+ GA+ A ++ T L++A ++IV++L GA+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYG-LTPLYLATAHGHLEIVEVLLKNGAD-- 72
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
VN + G TPLH+A LEI ++LL GAD+N+ + G T +I ++ L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Query: 380 VNH 382
Sbjct: 133 QKL 135
Score = 119 bits (302), Expect = 9e-32
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 40/170 (23%)
Query: 377 NYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQA 436
++ +HG DL L A++ G + V L+ +
Sbjct: 5 HHHHHHGSDL------GKKLLEAARAGQDDEVRILMAN---------------------- 36
Query: 437 SLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIY 495
GAD+ AK G T L+LA G+L +V L+K+ D+N+ + +G TP++
Sbjct: 37 -----------GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH 85
Query: 496 FAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
A HLEI +LLK GADV + K T ++ + ++ L
Sbjct: 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 114 bits (288), Expect = 6e-30
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
D L A G V L+ + D+N++++ G TP+Y A + HLEI +LLK GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHL 574
V FT LH+A +E+ LL H VN QD G T +I ++ L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Query: 575 I 575
Sbjct: 133 Q 133
Score = 105 bits (265), Expect = 8e-27
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 45/172 (26%)
Query: 704 LVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAA 763
+G+D+ L A+ G +D R L+ AD+ ++ T L A
Sbjct: 7 HHHHGSDLG---------KKLLEAARAG-QDDEVRILMAN-GADVNAKDEYGLTPLYLAT 55
Query: 764 FGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGS 823
+L++++ LLK GAD + +D G
Sbjct: 56 AHGHLEIVEVLLKNGADVNAVD----------------------------------AIGF 81
Query: 824 TALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLL 875
T LH AAF L+I ++LLK+ AD+NA+DK+GK AF + N D+ L
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 105 bits (264), Expect = 1e-26
Identities = 45/165 (27%), Positives = 64/165 (38%), Gaps = 33/165 (20%)
Query: 513 GADVAVKMKSNF-TCLHVACEFASIEMVSFLLSH-IGVNLQDNKGCTPLHCAIVGNQLEV 570
G+ S+ L A + V L+++ VN +D G TPL+ A LE+
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62
Query: 571 FNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGC 630
L+ + AD+ N + IG TPLH+A G
Sbjct: 63 VEVLLKNGADV------------------------------NAVDAIGFTPLHLAAFIGH 92
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEAN 675
LE + LL DVN + K G TA + + DL EIL + N
Sbjct: 93 LEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 98.6 bits (247), Expect = 2e-24
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 45/177 (25%)
Query: 669 EILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYAS 728
+D+ L A D +++L+ GADVN +E Y +TPL+ A+
Sbjct: 5 HHHHHHGSDLG------KKLLEAARAG-QDDEVRILMANGADVNAKDE--YGLTPLYLAT 55
Query: 729 YRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKD 788
G +I L++ AD+ + T L+ AAF +L++ + LLK GAD + D
Sbjct: 56 AHG-HLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD--- 110
Query: 789 TSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYN 845
K G TA + + D+ ++L K N
Sbjct: 111 -------------------------------KFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 98.2 bits (246), Expect = 3e-24
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 572 NHLINSNADITMYKNDSPLHLACATGNMDMITYAMKY-FDVNIENDIGETPLHVAVSHGC 630
+H + +D+ L A G D + M DVN +++ G TPL++A +HG
Sbjct: 5 HHHHHHGSDL-----GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 631 LEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLY 689
LE V+ LL DVN G T L A + L++ E+LL+ ADVN D T
Sbjct: 60 LEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118
Query: 690 TALMKDPSLDIIKMLVKY 707
++ + D+ ++L K
Sbjct: 119 ISIGNG-NEDLAEILQKL 135
Score = 88.6 bits (221), Expect = 7e-21
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 791 PLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINA 850
LL + R G + V L+ AD N + ++G T L+ A H L+I+++LLK AD+NA
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKD-EYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 851 EDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
D G H A + +I LL G+++ K+ T
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Score = 62.4 bits (153), Expect = 1e-11
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L A +I ++L+ G +N VD TPLH A +E+
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-----------IGFTPLHLAAFIGHLEI 95
Query: 274 VKLLLEKGANPLAIEKSRN-RTALHVAAIVESVDIVKLL 311
++LL+ GA+ + + +TA ++ + D+ ++L
Sbjct: 96 AEVLLKHGADV--NAQDKFGKTAFDISIGNGNEDLAEIL 132
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 133 bits (336), Expect = 2e-34
Identities = 48/329 (14%), Positives = 107/329 (32%), Gaps = 46/329 (13%)
Query: 221 ALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEK 280
+ D+ + + + +N + + ++ + L + E+ L
Sbjct: 26 PIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNND 85
Query: 281 GANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQ-NVAGLTPLHIACRRKC 339
+N + S N+ HV+ ++ + +N+ + G TPLH
Sbjct: 86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN--LNIPVDEHGNTPLHWLTSIAN 143
Query: 340 LEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMA 399
LE+VK L+ G++ G++ G + L A+ + D E
Sbjct: 144 LELVKHLVKHGSNRLYGDNMGESCLVKAV----------KSVNNYDSGTFE--------- 184
Query: 400 SQFGNLEMVNYLLKHININHQDKDGWTPL-----TCSIKGQASL------EVFHSIIEAG 448
+++YL + + +D T L T + G ++ + I++
Sbjct: 185 ------ALLDYL--YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236
Query: 449 ADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-----IDINSENDLGKTPIYFAIKNNHL 503
+ + + + +N+++ G T + A + ++
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296
Query: 504 EIFNLLLKLGADVAVKMKSNFTCLHVACE 532
I + LL GAD + KS +
Sbjct: 297 SIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 128 bits (324), Expect = 9e-33
Identities = 56/315 (17%), Positives = 105/315 (33%), Gaps = 36/315 (11%)
Query: 572 NHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCL 631
+I D+T SPL + A + + N + E L +
Sbjct: 25 GPIITFTHDLTSDFLSSPLKIMKALPS--------PVVNDNEQKMKLEAFLQRLLFPEIQ 76
Query: 632 EAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLD-LVEILLEANADVNL---GDGTYTP 687
E L N + + N + + +D L + + ++N+ G TP
Sbjct: 77 EMPTSLNNDSS-NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG-NTP 134
Query: 688 LYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARF--LVEECN 745
L+ +L+++K LVK+G++ + + L A + D F L++
Sbjct: 135 LHWLTSIA-NLELVKHLVKHGSNRLYGDNMGE--SCLVKAVKSVNNYDSGTFEALLDYLY 191
Query: 746 ADITLRNFNNRTALNFAAFGNNLD------------LLKFLLKAGADPDILDLKDTSPLL 793
+ L + NRT L+ + + L+ +++K P +
Sbjct: 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP 251
Query: 794 ----SSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADIN 849
+ + E +D N + +G T L+ AA + I+ LL Y AD
Sbjct: 252 NDKNGERKDSILENLDLKWIIANMLNAQD-SNGDTCLNIAARLGNISIVDALLDYGADPF 310
Query: 850 AEDKYGKIAFHSACQ 864
+K G
Sbjct: 311 IANKSGLRPVDFGAG 325
Score = 122 bits (307), Expect = 1e-30
Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 29/271 (10%)
Query: 416 NINHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNL-AMV 474
N N Q L + + E+ S+ ++ ++ + L +
Sbjct: 55 NDNEQKMKLEAFLQRLLFPEIQ-EMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVN 113
Query: 475 NYLVKH-IDINSEND-LGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACE 532
+ +++N D G TP+++ +LE+ L+K G++ +CL A +
Sbjct: 114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
Query: 533 F---ASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLE------------VFNHLI 575
LL ++ + L+D+ T LH I+ + + + ++
Sbjct: 174 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233
Query: 576 NSNADITMYKNDS--PLHLACATGNMDMITYAMKY-----FDVNIENDIGETPLHVAVSH 628
+ D I + +N ++ G+T L++A
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293
Query: 629 GCLEAVKFLLNTKNIDVNHKTKDGSTALFFA 659
G + V LL+ D K G + F
Sbjct: 294 GNISIVDALLD-YGADPFIANKSGLRPVDFG 323
Score = 92.0 bits (228), Expect = 3e-20
Identities = 47/252 (18%), Positives = 80/252 (31%), Gaps = 52/252 (20%)
Query: 169 SDKKETSKNPQSSDSNS---DKALEEELTNIFKKFDLLEHPEYLSHS----------QGY 215
+ +E + + SN + ++ ++ L E + ++ G
Sbjct: 73 PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGN 132
Query: 216 KALCWALQEKKTDIAKLLVDKGVPLNLVDKG--VPL--------NYSRR----------- 254
L W ++ K LV G D L NY
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 192
Query: 255 -IIETD----TPLHSAILNSDIE------------LVKLLLEKGANPLAIEKSRNRTALH 297
+I D T LH I+ S + L+ +++K P+ + + +
Sbjct: 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252
Query: 298 VAAIVESVDIVKLL-FDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSG 356
I++ L + +N Q+ G T L+IA R + IV LLD GAD
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312
Query: 357 NDDGCTPLFCAI 368
N G P+
Sbjct: 313 NKSGLRPVDFGA 324
Score = 80.8 bits (199), Expect = 2e-16
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 5/144 (3%)
Query: 752 NFNNRTALNFAAFGNNLDLLKFLLKAGAD-PDILDLKDTSPLLSSCRQGLYEIVDTLLEY 810
L F ++ L ++ + S L E+ D
Sbjct: 60 KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119
Query: 811 NADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKN--- 867
+ N+ +HG+T LH L+++K L+K+ ++ D G+ A ++ N
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 179
Query: 868 WDIVTFLLDA-GSNIEKATKYRMT 890
LLD + T
Sbjct: 180 SGTFEALLDYLYPCLILEDSMNRT 203
Score = 67.4 bits (164), Expect = 4e-12
Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 8/184 (4%)
Query: 692 LMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLR 751
L D +K++ + V NE + + ++ L + +++
Sbjct: 34 LTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNND-SSNRNSE 92
Query: 752 NFNNRTALNFAAFGNNLD-LLKFLLKAGADPDI-LDLKDTSPLLSSCRQGLYEIVDTLLE 809
++ +F + L + + +I +D +PL E+V L++
Sbjct: 93 GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152
Query: 810 YNADTNLRTIKHGSTALHTAAFHN---QLDIIKLLLKYN-ADINAEDKYGKIAFHSACQA 865
+ ++ G + L A + LL Y + ED + H
Sbjct: 153 HGSNRLYGD-NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT 211
Query: 866 KNWD 869
Sbjct: 212 SGMT 215
Score = 57.0 bits (137), Expect = 1e-08
Identities = 21/147 (14%), Positives = 45/147 (30%), Gaps = 1/147 (0%)
Query: 745 NADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIV 804
N L + L ++K L + + +K + L + E+
Sbjct: 20 NDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMP 79
Query: 805 DTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINA-EDKYGKIAFHSAC 863
+L +++ N H + ++ ++N D++G H
Sbjct: 80 TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT 139
Query: 864 QAKNWDIVTFLLDAGSNIEKATKYRMT 890
N ++V L+ GSN +
Sbjct: 140 SIANLELVKHLVKHGSNRLYGDNMGES 166
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 125 bits (317), Expect = 6e-34
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 259 DTPLHSAILNSDIELVKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGA 316
D A+ N D++ VK + KG + + ++ R LH AA ++I++ L GA
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 317 EKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEV 375
+ +N + +TPL A + VK+LL KGAD DG T Q +
Sbjct: 65 D--INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 122 bits (309), Expect = 8e-33
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
A + L+ VK + KG D+N + G PL A LE+ +L+ G D+
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 387 SVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQASLEVFHSI 444
+ P + T L A G++ V LL + + DG T + ++
Sbjct: 67 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA-----TDNQAIKAL 121
Query: 445 IE 446
++
Sbjct: 122 LQ 123
Score = 120 bits (303), Expect = 4e-32
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
A +D VK G + VN G PLH A LEI++ LL KGAD
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSV--PEGERTALHMASQFGNLEMV 408
IN+ + TPL A+ + + L++ G D +V P+G TA ++
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG-LTAFEATDNQAIKALL 122
Score = 110 bits (279), Expect = 8e-29
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+ + A+ +G L+ VK + K DVN + G L +A +L+++E LL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 675 NADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRG 731
AD+N D TPL +A+ + + +K+L+ GAD + +T +
Sbjct: 63 GADINAPDKHHITPLLSAVYEG-HVSCVKLLLSKGADKTVKGP--DGLTAFEATDNQA 117
Score = 110 bits (278), Expect = 1e-28
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
A G+L V V D+N + G+ P+++A LEI LL GAD
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLEV 570
+ K + T L A + V LLS G ++ G T +
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 109 bits (274), Expect = 3e-28
Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 34/148 (22%)
Query: 393 RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
A + G+L+ V + G D+
Sbjct: 8 DKEFMWALKNGDLDEVKDY---------------------------------VAKGEDVN 34
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
L G LH A G L ++ +L+ DIN+ + TP+ A+ H+ LLL
Sbjct: 35 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94
Query: 512 LGADVAVKMKSNFTCLHVACEFASIEMV 539
GAD VK T A ++
Sbjct: 95 KGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 108 bits (273), Expect = 5e-28
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 357 NDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH- 414
A+ L+ V G D++ EG R LH A+ G LE++ +LL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 415 ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAM 473
+IN DK TPL +G + ++ GAD K DG TA A+
Sbjct: 64 ADINAPDKHHITPLLSAVYEG--HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Query: 474 V 474
+
Sbjct: 122 L 122
Score = 104 bits (262), Expect = 1e-26
Identities = 38/183 (20%), Positives = 51/183 (27%), Gaps = 63/183 (34%)
Query: 487 NDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHI 546
+ +A+KN L+ + G D
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED------------------------------- 32
Query: 547 GVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAM 606
VN G PLH A QLE+ L+ A
Sbjct: 33 -VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA--------------------------- 64
Query: 607 KYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLD 666
D+N + TPL AV G + VK LL+ K D K DG TA
Sbjct: 65 ---DINAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATDNQAIKA 120
Query: 667 LVE 669
L++
Sbjct: 121 LLQ 123
Score = 99.0 bits (248), Expect = 1e-24
Identities = 33/156 (21%), Positives = 48/156 (30%), Gaps = 37/156 (23%)
Query: 552 DNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDV 611
+ A+ L+ + D V
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED------------------------------V 33
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
N + G PLH A G LE ++FLL K D+N K T L A Y+ + V++L
Sbjct: 34 NRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVK 706
L AD + T IK L++
Sbjct: 93 LSKGADKTVKGPDGLTAFEAT-----DNQAIKALLQ 123
Score = 99.0 bits (248), Expect = 1e-24
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 752 NFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYN 811
+A +LD +K + G D + PL + G EI++ LL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 812 ADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIV 871
AD N KH T L +A + + +KLLL AD + G AF + ++
Sbjct: 64 ADINAPD-KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 92.1 bits (230), Expect = 3e-22
Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 212 SQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDI 271
S K WAL+ D K V KG +N R PLH A +
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL-----EGGR------KPLHYAADCGQL 53
Query: 272 ELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPL 331
E+++ LL KGA+ A +K + T L A V VKLL GA+ V+ GLT
Sbjct: 54 EILEFLLLKGADINAPDKH-HITPLLSAVYEGHVSCVKLLLSKGAD--KTVKGPDGLTAF 110
Query: 332 HIACRRKCLEIVK 344
+ +++
Sbjct: 111 EATDNQAIKALLQ 123
Score = 79.4 bits (197), Expect = 9e-18
Identities = 17/71 (23%), Positives = 29/71 (40%)
Query: 820 KHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGS 879
A + LD +K + D+N + G+ H A +I+ FLL G+
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 880 NIEKATKYRMT 890
+I K+ +T
Sbjct: 65 DINAPDKHHIT 75
Score = 33.1 bits (77), Expect = 0.10
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 850 AEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
F A + + D V + G ++ + +
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRK 42
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 121 bits (307), Expect = 9e-33
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 321 NVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLV 380
+ G TPLH A + E VK LL KGAD+N+ + DG TPL A E+ L+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 381 NHGCDLSVP-EGERTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPL 428
G D++ + T H+A + G+ E+V L ++N +
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 117 bits (295), Expect = 4e-31
Identities = 45/105 (42%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKS 319
TPLH+A N E VK LL KGA+ A K T LH+AA +IVKLL GA+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGAD-- 67
Query: 320 VNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPL 364
VN ++ G TP H+A + EIVK+L KGAD+N+ +
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 115 bits (290), Expect = 2e-30
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G +K DG T LH A G+ V L+ D+N+ + G TP++ A KN H EI
Sbjct: 1 GHMWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 507 NLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLH 560
LLL GADV + K T H+A + E+V L + G VN + H
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHHH 113
Score = 110 bits (278), Expect = 8e-29
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 350 GADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGERTALHMASQFGNLEMV 408
G + DG TPL A E L++ G D++ + T LH+A++ G+ E+V
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 409 NYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALH 463
LL ++N + KDG TP G E+ + GAD+ A+ + H
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNG--HHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 106 bits (267), Expect = 3e-27
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
+ G TPLH A +G E VK LL+ K DVN ++KDG+T L A + ++V++L
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHY 726
L ADVN TP + A +I+K+L GADVN + H+
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNG-HHEIVKLLDAKGADVNARSW--GSSHHHHH 114
Score = 105 bits (265), Expect = 5e-27
Identities = 41/137 (29%), Positives = 55/137 (40%), Gaps = 34/137 (24%)
Query: 393 RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
T LH A++ G+ E V LL GAD+
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSK---------------------------------GADVN 36
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
A+ DG T LHLA G+ +V L+ D+N+ + G TP + A KN H EI LL
Sbjct: 37 ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 512 LGADVAVKMKSNFTCLH 528
GADV + + H
Sbjct: 97 KGADVNARSWGSSHHHH 113
Score = 99.4 bits (249), Expect = 6e-25
Identities = 39/144 (27%), Positives = 54/144 (37%), Gaps = 32/144 (22%)
Query: 547 GVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAM 606
G G TPLH A E L++ AD+
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV------------------------- 35
Query: 607 KYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLD 666
N + G TPLH+A +G E VK LL K DVN ++KDG+T A + +
Sbjct: 36 -----NARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLAKKNGHHE 89
Query: 667 LVEILLEANADVNLGDGT-YTPLY 689
+V++L ADVN +
Sbjct: 90 IVKLLDAKGADVNARSWGSSHHHH 113
Score = 98.2 bits (246), Expect = 2e-24
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
+ T L+ AA + + +K LL GAD + +PL + + G EIV LL AD
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFH 860
N R+ K G+T H A + +I+KLL AD+NA H
Sbjct: 68 VNARS-KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 80.9 bits (201), Expect = 2e-18
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 820 KHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGS 879
K G+T LH AA + + +K LL AD+NA K G H A + + +IV LL G+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 880 NIEKATKYRMT 890
++ +K T
Sbjct: 67 DVNARSKDGNT 77
Score = 51.6 bits (125), Expect = 3e-08
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
G L A + +I KLL+ KG +N K + +TP H A N E+
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSK-----------DGNTPEHLAKKNGHHEI 90
Query: 274 VKLLLEKGANPLAIEKSRN-RTALH 297
VKLL KGA+ A +S H
Sbjct: 91 VKLLDAKGADVNA--RSWGSSHHHH 113
Score = 38.5 bits (91), Expect = 0.001
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 846 ADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
K G H+A + + + V LL G+++ +K T
Sbjct: 2 HMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNT 44
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 108 bits (272), Expect = 3e-28
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 293 RTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
RT LH+AA +++VKLL + GA+ VN ++ G TPLH+A R LE+VK+LL+ GAD
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHG 383
+N+ + +G TPL A LEV L+ G
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 105 bits (265), Expect = 2e-27
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 327 GLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDL 386
G TPLH+A R LE+VK+LL+ GAD+N+ + +G TPL A LEV L+ G D+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 387 SVP-EGERTALHMASQFGNLEMVNYLLKH 414
+ + RT LH+A++ G+LE+V LL+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 97.0 bits (243), Expect = 2e-24
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 34/123 (27%)
Query: 393 RTALHMASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIK 452
RT LH+A++ G+LE+V LL+ GAD+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA---------------------------------GADVN 29
Query: 453 AKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLK 511
AK +G T LHLA G+L +V L++ D+N+++ G+TP++ A +N HLE+ LLL+
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 512 LGA 514
GA
Sbjct: 90 AGA 92
Score = 95.5 bits (239), Expect = 9e-24
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGAD 515
+G T LHLA G+L +V L++ D+N+++ G+TP++ A +N HLE+ LLL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 516 VAVKMKSNFTCLHVACEFASIEMVSFLLSH 545
V K K+ T LH+A +E+V LL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 94.7 bits (237), Expect = 2e-23
Identities = 44/94 (46%), Positives = 60/94 (63%), Gaps = 7/94 (7%)
Query: 260 TPLHSAILNSDIELVKLLLEKGANPLAIEKSRN--RTALHVAAIVESVDIVKLLFDYGAE 317
TPLH A N +E+VKLLLE GA+ + RT LH+AA +++VKLL + GA+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 318 KSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGA 351
VN ++ G TPLH+A R LE+VK+LL+ GA
Sbjct: 61 --VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 91.3 bits (228), Expect = 2e-22
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 618 GETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANAD 677
G TPLH+A +G LE VK LL DVN K K+G T L A + L++V++LLEA AD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 678 VNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA 709
VN D TPL+ A L+++K+L++ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGA 92
Score = 87.8 bits (219), Expect = 4e-21
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 36/124 (29%)
Query: 359 DGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLLKH-INI 417
+G TPL H+A++ G+LE+V LL+ ++
Sbjct: 1 NGRTPL--------------------------------HLAARNGHLEVVKLLLEAGADV 28
Query: 418 NHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGNLAMVNY 476
N +DK+G TPL + G LEV ++EAGAD+ AK +G T LHLA G+L +V
Sbjct: 29 NAKDKNGRTPLHLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 477 LVKH 480
L++
Sbjct: 87 LLEA 90
Score = 85.1 bits (212), Expect = 3e-20
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 34/125 (27%)
Query: 754 NNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNAD 813
N RT L+ AA +L+++K LL+AGAD + D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---------------------------- 32
Query: 814 TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTF 873
K+G T LH AA + L+++KLLL+ AD+NA+DK G+ H A + + ++V
Sbjct: 33 ------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 874 LLDAG 878
LL+AG
Sbjct: 87 LLEAG 91
Score = 81.6 bits (203), Expect = 6e-19
Identities = 43/122 (35%), Positives = 55/122 (45%), Gaps = 31/122 (25%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYFDVNIE 614
G TPLH A LEV L+ + AD VN +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD------------------------------VNAK 31
Query: 615 NDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
+ G TPLH+A +G LE VK LL DVN K K+G T L A + L++V++LLEA
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Query: 675 NA 676
A
Sbjct: 91 GA 92
Score = 78.9 bits (196), Expect = 5e-18
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 821 HGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
+G T LH AA + L+++KLLL+ AD+NA+DK G+ H A + + ++V LL+AG++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 881 IEKATKYRMT 890
+ K T
Sbjct: 61 VNAKDKNGRT 70
Score = 78.9 bits (196), Expect = 5e-18
Identities = 43/149 (28%), Positives = 57/149 (38%), Gaps = 62/149 (41%)
Query: 490 GKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVN 549
G+TP++ A +N HLE+ LLL+ GADV N
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV--------------------------------N 29
Query: 550 LQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACATGNMDMITYAMKYF 609
+D G TPLH A LEV L+ + AD+
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---------------------------- 61
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLL 638
N ++ G TPLH+A +G LE VK LL
Sbjct: 62 --NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 78.6 bits (195), Expect = 7e-18
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 651 DGSTALFFACYDKRLDLVEILLEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKYGA 709
+G T L A + L++V++LLEA ADVN D TPL+ A L+++K+L++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGA 59
Query: 710 DVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
DVN ++ TPLH A+ G ++ + L+E
Sbjct: 60 DVNAKDK--NGRTPLHLAARNG-HLEVVKLLLE 89
Score = 74.3 bits (184), Expect = 2e-16
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 36/126 (28%)
Query: 721 MTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGAD 780
TPLH A+ G ++ + L+E AD+ ++ N RT L+ AA +L+++K LL+AGAD
Sbjct: 3 RTPLHLAARNG-HLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 781 PDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKL 840
+ D K+G T LH AA + L+++KL
Sbjct: 61 VNAKD----------------------------------KNGRTPLHLAARNGHLEVVKL 86
Query: 841 LLKYNA 846
LL+ A
Sbjct: 87 LLEAGA 92
Score = 47.3 bits (114), Expect = 7e-07
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDK-GVPLNYSRRIIETDTPLHSAILNSDIE 272
G L A + ++ KLL++ G +N DK G TPLH A N +E
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG------------RTPLHLAARNGHLE 82
Query: 273 LVKLLLEKGA 282
+VKLLLE GA
Sbjct: 83 VVKLLLEAGA 92
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 105 bits (264), Expect = 5e-27
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
Query: 299 AAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGND 358
+ L G+ L A R + V+IL+ GAD+ + +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM-----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55
Query: 359 DGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYL 411
+G TPL A LEV L+ G D+ + +TA ++ GN ++ L
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 104 bits (262), Expect = 1e-26
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 265 AILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQN 324
+ L+ +G++ + L AA D V++L GA+ V ++
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGS-DLGKKLLEAARAGQDDEVRILMANGAD--VAAKD 54
Query: 325 VAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYL 379
G TPLH+A R LE+VK+LL+ GAD+ + + G T +I ++ L
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 96.5 bits (241), Expect = 5e-24
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 39/146 (26%)
Query: 334 ACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGER 393
L+ +G+ + S D L
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKL----------------------------- 28
Query: 394 TALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADI 451
A++ G + V L+ + ++ +DK+G TPL + G LEV ++EAGAD+
Sbjct: 29 ---LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG--HLEVVKLLLEAGADV 83
Query: 452 KAKLMDGTTALHLACYFGNLAMVNYL 477
A+ G TA ++ GN + L
Sbjct: 84 XAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 94.9 bits (237), Expect = 2e-23
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 399 ASQFGNLEMVNYLLKH-ININHQDKDGWTPLTC-SIKGQASLEVFHSIIEAGADIKAKLM 456
S + + L+ ++ D L + G + ++ GAD+ AK
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG--QDDEVRILMANGADVAAKDK 55
Query: 457 DGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLL 509
+G+T LHLA G+L +V L++ D+ +++ GKT +I N + ++ +L
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 89.9 bits (224), Expect = 1e-21
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 762 AAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKH 821
+ ++ L+ G+ + LL + R G + V L+ AD + K+
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKD-KN 56
Query: 822 GSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFL 874
GST LH AA + L+++KLLL+ AD+ A+DK+GK AF + N D+ L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 86.1 bits (214), Expect = 3e-20
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 497 AIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIG--VNLQDNK 554
++H + L+ G+ + L A + V L+++ G V +D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMAN-GADVAAKDKN 56
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITY 604
G TPLH A LEV L+ + AD+ + ++ GN D+
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Score = 85.7 bits (213), Expect = 4e-20
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 802 EIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHS 861
L+ + L AA Q D +++L+ AD+ A+DK G H
Sbjct: 8 HHSSGLVPRGSHMG----SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHL 63
Query: 862 ACQAKNWDIVTFLLDAGSNIEKATKYRMT 890
A + + ++V LL+AG+++ K+ T
Sbjct: 64 AARNGHLEVVKLLLEAGADVXAQDKFGKT 92
Score = 85.3 bits (212), Expect = 5e-20
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 465 ACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSN 523
+ + LV + S+ + A + + +L+ GADVA K K+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 524 FTCLHVACEFASIEMVSFLLSHIG--VNLQDNKGCTPLHCAIVGNQLEVFNHL 574
T LH+A +E+V LL G V QD G T +I ++ L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 81.9 bits (203), Expect = 8e-19
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
SH L+ + + D L A + D V IL+ ADV D
Sbjct: 1 GSSHHHHHHSSGLVP-RGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 685 -YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFL 740
TPL+ A L+++K+L++ GADV ++ + T + G D+A L
Sbjct: 57 GSTPLHLAARNG-HLEVVKLLLEAGADVXAQDK--FGKTAFDISIDNG-NEDLAEIL 109
Score = 81.9 bits (203), Expect = 8e-19
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 659 ACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEAC 718
L+ + + D L A D +++L+ GADV ++
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG-SDL-GKKLLEAARAG-QDDEVRILMANGADVAAKDK-- 55
Query: 719 YYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKFL 774
TPLH A+ G ++ + L+E AD+ ++ +TA + + N DL + L
Sbjct: 56 NGSTPLHLAARNG-HLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 81.9 bits (203), Expect = 8e-19
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 697 SLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNR 756
LV G+ + L A+ G +D R L+ AD+ ++ N
Sbjct: 6 HHHHSSGLVPRGSHMGSDLG-----KKLLEAARAG-QDDEVRILMAN-GADVAAKDKNGS 58
Query: 757 TALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTL 807
T L+ AA +L+++K LL+AGAD D + S G ++ + L
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 81.1 bits (201), Expect = 1e-18
Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 33/142 (23%)
Query: 530 ACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSP 589
S L+ G ++ + L A Q + L+ + AD+
Sbjct: 1 GSSHHHHHHSSGLVPR-GSHM-GSDLGKKLLEAARAGQDDEVRILMANGADV-------- 50
Query: 590 LHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKT 649
++ G TPLH+A +G LE VK LL DV +
Sbjct: 51 ----------------------AAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQD 87
Query: 650 KDGSTALFFACYDKRLDLVEIL 671
K G TA + + DL EIL
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 79.2 bits (196), Expect = 8e-18
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 612 NIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
++ +D L A G + V+ L+ DV K K+GST L A + L++V++L
Sbjct: 19 HMGSD-LGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKML 704
LEA ADV D T ++ + D+ ++L
Sbjct: 77 LEAGADVXAQDKFGKTAFDISIDNG-NEDLAEIL 109
Score = 60.3 bits (147), Expect = 3e-11
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 214 GYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIEL 273
K L A + + D ++L+ G + DK TPLH A N +E+
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDK-----------NGSTPLHLAARNGHLEV 72
Query: 274 VKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLL 311
VKLLLE GA+ A +K +TA ++ + D+ ++L
Sbjct: 73 VKLLLEAGADVXAQDKF-GKTAFDISIDNGNEDLAEIL 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 82.0 bits (202), Expect = 8e-16
Identities = 85/542 (15%), Positives = 155/542 (28%), Gaps = 168/542 (30%)
Query: 524 FTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQL-EVFNHLINSNADIT 582
T H S+E L+ T + +QL E FN ++ +
Sbjct: 9 LTLSH-----GSLE-HVLLVP------------TASF--FIASQLQEQFNKILPEPTEGF 48
Query: 583 MYKND--SPLHLA------CAT-------GNMDMI-TYAMKYFDVNI--ENDIGETPLHV 624
++ +P L ++ G D + + F+ NDI H
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-----HA 103
Query: 625 AVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGT 684
+ + + T T Y + A
Sbjct: 104 LAAK--------------LLQENDTTLVKTKELIKNY----------ITARIMAKRPFDK 139
Query: 685 YTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLH--YASYRGDCNDIARFLVE 742
+ +AL + +++ +G N + Y L Y +Y + L++
Sbjct: 140 KSN--SALFRAVGEGNAQLVAIFGGQGN--TDD--YFEELRDLYQTYHV----LVGDLIK 189
Query: 743 ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQ-GL- 800
+ TL T F L++L++L PD L + P+ SC G+
Sbjct: 190 F--SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPI--SCPLIGVI 244
Query: 801 ----YEIVDTLLEYNADTNLRTIKHGST----ALHTAAFHNQLDIIKLLLKYNAD----- 847
Y + LL + LR+ G+T L TA I D
Sbjct: 245 QLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTAVA------IAE-----TDSWESF 292
Query: 848 INAEDKYGKIAFH--SACQAKNWDIVTF----LLDAGSNIEKATKYRM---TFESSKVVE 898
+ K + F C + + + L D+ N E M + + + V+
Sbjct: 293 FVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSLENNEGVPSP-MLSISNLTQEQVQ 350
Query: 899 KHVAKLRA-----ANIYV-----DKNIMV-------QFLTTQVNDFYEECLREVA----L 937
+V K + + + KN++V L LR+ L
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT--------LRKAKAPSGL 402
Query: 938 LKCEKPGDQEKVSFY------------DILSKHPAQVEFYAKNPQISNCVKWKDLNLQFP 985
+ P + K+ F +L + +S + ++Q P
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS----FNAKDIQIP 458
Query: 986 IY 987
+Y
Sbjct: 459 VY 460
Score = 57.0 bits (137), Expect = 4e-08
Identities = 103/621 (16%), Positives = 175/621 (28%), Gaps = 229/621 (36%)
Query: 380 VNHG---CDLSVPEGERTALHM-ASQ----F------------------GNLEMVNYLLK 413
++HG L VP TA ASQ F E+V L
Sbjct: 11 LSHGSLEHVLLVP----TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 414 HININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADI---KAKLM-DGTTALH-----L 464
+++ + + L F + G DI AKL+ + T L +
Sbjct: 67 YVS--SLVEPSKVGQFDQVL-NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 465 ACYFGNLAMVNYLVKHIDINSENDL------GKTPIYFAIKNNHLEIFNLLLKLG---AD 515
Y M + D S + L G + A IF G D
Sbjct: 124 KNYITARIMAK---RPFDKKSNSALFRAVGEGNAQLV-A-------IFG-----GQGNTD 167
Query: 516 VAVKMKSNFTCLHVACEFASI-----EMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEV 570
+ E + +V L+ L L + +V
Sbjct: 168 DYFE------------ELRDLYQTYHVLVGDLIKFSAETLS------EL-IRTTLDAEKV 208
Query: 571 FNHLINSNADITMYKNDSP--LHLACATGNMDMIT-YAMKYFDVNIENDIGETPLHV--- 624
F +N + +++P +L + +I + ++ V + +G TP +
Sbjct: 209 FTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL-LGFTPGELRSY 266
Query: 625 --AVSHGCLEAV-------------KFLLNTKNIDVNHKTKDGSTALFF---ACYDK--R 664
+ G + + F ++ + T LFF CY+
Sbjct: 267 LKGAT-GHSQGLVTAVAIAETDSWESFFVSVRKA---------ITVLFFIGVRCYEAYPN 316
Query: 665 LDLVEILLEANADVNLGDGTYTPLYTALM---KDPSLDIIKMLVKYGADVNLTNEACYYM 721
L +LE + + +G +P M + + + ++ V TN
Sbjct: 317 TSLPPSILEDSLEN--NEGVPSP-----MLSISNLTQEQVQDYVNK------TN------ 357
Query: 722 TPLHYASYRGDCNDIARFLVEECNADITLRNFNNRTALNFAAFGNNLDLLKF---LLKAG 778
L +I+L N A N G L L KA
Sbjct: 358 ----------------SHLPAGKQVEISLVN----GAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 779 ADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQL--- 835
A D S + S R+ + + L + + FH+ L
Sbjct: 398 APSG----LDQSRIPFSERK--LKFSNRFL---------PV--------ASPFHSHLLVP 434
Query: 836 ---DIIKLLLKYNADINAEDKYGKIAFHSACQAKNW-----DIVTFLLDAGSNI------ 881
I K L+K N NA+D +I + + I ++D I
Sbjct: 435 ASDLINKDLVKNNVSFNAKDI--QIPVYDTFDGSDLRVLSGSISERIVDC---IIRLPVK 489
Query: 882 -EKATKYRMTFESSKVVEKHV 901
E T+++ T H+
Sbjct: 490 WETTTQFKAT---------HI 501
Score = 44.7 bits (105), Expect = 2e-04
Identities = 46/253 (18%), Positives = 76/253 (30%), Gaps = 87/253 (34%)
Query: 142 KNSQAKTNGVPTKKPKVTQDQWNIVTVSDKKETSKNPQSSDSNS----DKALEEELTNIF 197
++S GVP+ P ++++S+ + + +NS K +E L N
Sbjct: 325 EDSLENNEGVPS--P--------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 198 KKFDLLEHPEYLSHSQGYKALCWALQEKK----TDIAKLLVDKGVPLNLVDKGVPLNYSR 253
K + P+ L L L++ K D ++ +P +S
Sbjct: 375 KNLVVSGPPQSL------YGLNLTLRKAKAPSGLDQSR---------------IP--FSE 411
Query: 254 RIIETDT-------PLHSAILNSDIELVKLLLEKG-----ANPLAI-----EKSRN-RTA 295
R ++ P HS +L +L+ L K A + I + R
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV- 470
Query: 296 LHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINS 355
S I + + D V + HI LD G S
Sbjct: 471 -------LSGSISERIVDCIIRLPVKWETTTQFKATHI-------------LDFGPGGAS 510
Query: 356 G-------NDDGC 361
G N DG
Sbjct: 511 GLGVLTHRNKDGT 523
Score = 42.3 bits (99), Expect = 0.001
Identities = 53/321 (16%), Positives = 93/321 (28%), Gaps = 120/321 (37%)
Query: 726 YASYRGDCNDIARFLVEECNADITLRN----------FNNRTALNFAAFG--------NN 767
Y + A+ + AD ++ NN L FG N
Sbjct: 1636 YKTS-----KAAQDVWNR--ADNHFKDTYGFSILDIVINNPVNLTIH-FGGEKGKRIREN 1687
Query: 768 LDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVD---TLLEYNADTNL--RTIKHG 822
+ F + D + K +++ ++ T + ++ L T
Sbjct: 1688 YSAMIF--ETIVDGKLKTEK------------IFKEINEHSTSYTFRSEKGLLSATQ--- 1730
Query: 823 ST--ALHT---AAFHNQLDIIKLLLKYNADINAEDKY-GKIAFHS-------ACQAKNWD 869
T AL AAF LK I A+ + G HS A A D
Sbjct: 1731 FTQPALTLMEKAAFE--------DLKSKGLIPADATFAG----HSLGEYAALASLA---D 1775
Query: 870 IVTFLLDAGSNIEKATKYRMTFESSKVVEKHVAKLRAANIYVDKNIMVQFLTTQVNDFYE 929
+++ ++ + YR V + + I ++ + + +
Sbjct: 1776 VMSI-----ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS-------Q 1823
Query: 930 ECLREVALLKCEKPGDQEKVSFYDILSKHPAQVEFYAKNPQISNCVKWKDLNL---QFPI 986
E L+ V E+ + + VE I N N+ Q+
Sbjct: 1824 EALQYV----VER-----------VGKRTGWLVE-------IVN------YNVENQQYVA 1855
Query: 987 YGDVICC-KFTKVLNSLKNKN 1006
GD+ T VLN +K +
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQK 1876
Score = 39.6 bits (92), Expect = 0.006
Identities = 54/326 (16%), Positives = 103/326 (31%), Gaps = 124/326 (38%)
Query: 186 DKALEEELTNIFKKFDLLE----HPEYLS-HSQGYKALCWALQEKKTDIA-KLLVDKGVP 239
D ++ F +L+ +P L+ H G K ++E + + + +VD +
Sbjct: 1650 DNHFKDTY-----GFSILDIVINNPVNLTIHFGGEKGK--RIRENYSAMIFETIVDGKLK 1702
Query: 240 LNLVDKGVPLNYSRRIIETD------T----PLHSAILNSDIELVKLLLEKGANPLAI-- 287
+ K + + + ++ T P A+ + + L KG P
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQP---ALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 288 ------EKSRNRTALHVAAIVESV-DIVKLLFDYG--AEKSVNVQNVAGLTPLHIACRRK 338
E + AL A V S+ +V+++F G + +V + IA
Sbjct: 1760 AGHSLGEYA----ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI--- 1812
Query: 339 CLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHM 398
+ G S + + A+ V G+RT
Sbjct: 1813 ---------NPGRVAASFSQE-------ALQYVVERV---------------GKRTG--- 1838
Query: 399 ASQFGNLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDG 458
+E+VNY N+ +Q Q + AG D++
Sbjct: 1839 ----WLVEIVNY-----NVENQ--------------Q--------YVAAG-DLR------ 1860
Query: 459 TTALHLACYFGNLAMVNYL-VKHIDI 483
AL ++N++ ++ IDI
Sbjct: 1861 --ALDTVT-----NVLNFIKLQKIDI 1879
Score = 30.0 bits (67), Expect = 5.0
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 42/136 (30%)
Query: 115 ETLDLDDLGDIVAGRKGNWSITKTPAEKNSQAKTNG-----VPTK-KPKVTQDQWNIVTV 168
+ + ++ L ++V R G + ++ ++N P + +Q+ V
Sbjct: 1775 DVMSIESLVEVVFYR-GM--TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 169 SDKKET----------SKNPQSSDSNSDKALEEELTNIFKKFDLLEHPEYLSHSQGYKAL 218
K T +N Q + +AL + +TN+
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRAL-DTVTNVLNF------------------- 1871
Query: 219 CWALQEKKTDIAKLLV 234
++ +K DI +L
Sbjct: 1872 ---IKLQKIDIIELQK 1884
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 78.5 bits (193), Expect = 8e-16
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 10/133 (7%)
Query: 244 DKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRN-----RTALHV 298
K V ++RR L +AI N D+ V G + + LH+
Sbjct: 137 AKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHL 196
Query: 299 AAIVE---SVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINS 355
A V S+ +V + G ++ + G T LH A + +K+LL A + +
Sbjct: 197 AVKVANQASLPLVDFIIQNGGH--LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT 254
Query: 356 GNDDGCTPLFCAI 368
N+ G T L A
Sbjct: 255 VNEAGETALDIAR 267
Score = 75.0 bits (184), Expect = 1e-14
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 766 NNLDLLKFLLKAGADPDI------LDLKDTSPLLSSCRQG---LYEIVDTLLEYNADTNL 816
+L + G D + L + + +VD +++ +
Sbjct: 162 RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA 221
Query: 817 RTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLD 876
+ G+TALH AA +NQ D +KLLLK A + ++ G+ A A + + + L
Sbjct: 222 KA-ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Query: 877 AGSN 880
A +
Sbjct: 281 AQAG 284
Score = 63.1 bits (153), Expect = 1e-10
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 397 HMASQFGNLEMVNYLLKH-------ININHQDKDGWTPL--TCSIKGQASLEVFHSIIEA 447
A +L V + + L + QASL + II+
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 448 GADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIF 506
G + AK DG TALH A + + L+K + + N+ G+T + A K +H E
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 507 NLLLKLGAD 515
LL + A
Sbjct: 276 ELLEQAQAG 284
Score = 62.3 bits (151), Expect = 2e-10
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 457 DGTTALHLACYFGN---LAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
LHLA N L +V++++++ ++++ G T +++A N + LLLK
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 513 GADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLH 560
A V ++ T L +A + E L Q PLH
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELL-----EQAQAGTFAFPLH 291
Score = 62.3 bits (151), Expect = 2e-10
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)
Query: 693 MKDPSLDIIKMLVKYGADVNLTNEACY----YMTPLHYASYRGDCND--IARFLVEECNA 746
+ + L + G D LH A + + F+++
Sbjct: 159 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GG 217
Query: 747 DITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDT 806
+ + + TAL++AA N D LK LLK A ++ + L + ++ E +
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 277
Query: 807 LLE 809
L +
Sbjct: 278 LEQ 280
Score = 60.8 bits (147), Expect = 6e-10
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 11/117 (9%)
Query: 332 HIACRRKCLEIVKILLDKGADINS------GNDDGCTPLFCAIA---QNCLEVFNYLVNH 382
A + L V G D L A+ Q L + ++++ +
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 383 GCDLSVPEGE-RTALHMASQFGNLEMVNYLLKH-ININHQDKDGWTPLTCSIKGQAS 437
G L + TALH A+ + + + LLK + ++ G T L + K
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 272
Score = 58.5 bits (141), Expect = 3e-09
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 313 DYGAEKSVNVQNVAGLTPLHIACR---RKCLEIVKILLDKGADINSGNDDGCTPLFCAIA 369
D+G LH+A + + L +V ++ G +++ DG T L A
Sbjct: 176 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 235
Query: 370 QNCLEVFNYLVNHGCDLSVPEGE-RTALHMASQFGNLEMVNYLLK 413
N + L+ + TAL +A + + E L +
Sbjct: 236 YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 58.1 bits (140), Expect = 4e-09
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 493 PIYFAIKNNHLEIFNLLLKLGADVAVKMKSNF------TCLHVACEFA---SIEMVSFLL 543
++ AI N L G D + LH+A + A S+ +V F++
Sbjct: 154 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII 213
Query: 544 SH-IGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITM--YKNDSPLHLACATGNMD 600
+ ++ + G T LH A + NQ + L+ A + ++ L +A + +
Sbjct: 214 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 273
Score = 54.6 bits (131), Expect = 5e-08
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 13/136 (9%)
Query: 554 KGCTPLHCAIVGNQLEVFNHLINSNADITMYKND--------SPLHLACATGN---MDMI 602
L AI L + D LHLA N + ++
Sbjct: 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 209
Query: 603 TYAMKY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACY 661
+ ++ ++ + G T LH A + + +K LL V + G TAL A
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARK 268
Query: 662 DKRLDLVEILLEANAD 677
+ E+L +A A
Sbjct: 269 KHHKECEELLEQAQAG 284
Score = 52.7 bits (126), Expect = 2e-07
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 618 GETPLHVAVS---HGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEA 674
E LH+AV L V F++ ++ K DG+TAL +A + D +++LL+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 675 NADVNLGDGTY-TPLYTA 691
A V + T L A
Sbjct: 249 RALVGTVNEAGETALDIA 266
Score = 51.5 bits (123), Expect = 6e-07
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 17/138 (12%)
Query: 188 ALEEELTNIFKKFDLLEHPEYLSHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGV 247
A ++ D E + H + + ++ G L+
Sbjct: 172 ANGQDFGQPLPGPDAQAPEELVLH-----LAVKVANQASLPLVDFIIQNGGHLDAKAA-- 224
Query: 248 PLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDI 307
+ +T LH A L + + +KLLL+ A + ++ TAL +A +
Sbjct: 225 ---------DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA-GETALDIARKKHHKEC 274
Query: 308 VKLLFDYGAEKSVNVQNV 325
+LL A +V
Sbjct: 275 EELLEQAQAGTFAFPLHV 292
Score = 50.8 bits (121), Expect = 1e-06
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 821 HGSTALHTA---AFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDA 877
LH A A L ++ +++ ++A+ G A H A D + LL
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 878 GSNIE 882
+ +
Sbjct: 249 RALVG 253
Score = 50.0 bits (119), Expect = 2e-06
Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 13/143 (9%)
Query: 647 HKTKDGSTALFFACYDKRLDLVEILLEANADVN---LGDGTYTPLYTALM------KDPS 697
+ L+ A ++ L V D G P L S
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 698 LDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFNNRT 757
L ++ +++ G ++ T LHYA+ D + L++ A + N T
Sbjct: 206 LPLVDFIIQNGGHLDAKAADG--NTALHYAALYNQ-PDCLKLLLK-GRALVGTVNEAGET 261
Query: 758 ALNFAAFGNNLDLLKFLLKAGAD 780
AL+ A ++ + + L +A A
Sbjct: 262 ALDIARKKHHKECEELLEQAQAG 284
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 75.0 bits (184), Expect = 8e-15
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 787 KDTSPLLSSCRQG---LYEIVDTLLEYNADTNLRTIKHGSTALHTAAFHNQLDIIKLLLK 843
D + L + R IVD L++ + + + +T GSTALH + + +KLLL+
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLR 226
Query: 844 YNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSN 880
A I ++ G+ A + K+ L A S
Sbjct: 227 GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 71.2 bits (174), Expect = 2e-13
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 263 HSAILNSDIELVKLLLEKGAN-----PLAIEKSRNRTALHVAAIVE---SVDIVKLLFDY 314
A+ DI + G + PLA + TALH+A S+ IV L
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194
Query: 315 GAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCTPLFCAI 368
+++ Q G T LH C E +K+LL A I N+ G TPL A
Sbjct: 195 SG--NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Score = 68.5 bits (167), Expect = 1e-12
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 243 VDKGVPLNYSRRIIETDTPLHSAILNSD---IELVKLLLEKGANPLAIEKSRNRTALHVA 299
VD + + +T LH A+ + D + +V L++ N L + + TALH
Sbjct: 154 VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYC 212
Query: 300 AIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILL 347
+ ++ + +KLL A S+ + N +G TPL IA R K ++L
Sbjct: 213 CLTDNAECLKLLLRGKA--SIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 65.0 bits (158), Expect = 2e-11
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 413 KHININHQDKDGWTPLTCSIKG--QASLEVFHSIIEAGADIKAKLMDGTTALHLACYFGN 470
+ I + + + T L +++ + SL + +++ ++ + G+TALH C N
Sbjct: 158 EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217
Query: 471 LAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
+ L++ I N+ G+TP+ A + H LL +
Sbjct: 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 64.2 bits (156), Expect = 3e-11
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 329 TPLHIACR---RKCLEIVKILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCD 385
T LH+A R R L IV L+ +++ G T L + E L+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 386 LSVPEGE-RTALHMASQFGNLEMVNYLLK--------HININ 418
+ + T L +A + + L + H+++
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE 272
Score = 60.4 bits (146), Expect = 5e-10
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 705 VKYGADVNLTNEACYYMTPLHYASYRGD--CNDIARFLVEECNADITLRNFNNRTALNFA 762
V + L N T LH A D I FLV+ + ++ + TAL++
Sbjct: 154 VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYC 212
Query: 763 AFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEY 810
+N + LK LL+ A +I + +PL + R + L +
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 58.9 bits (142), Expect = 2e-09
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 457 DGTTALHLACYFGN---LAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKL 512
TALHLA + L +V++LV++ +++ + G T +++ ++ E LLL+
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 513 GADVAVKMKSNFTCLHVACEFASIEMVSFLL 543
A + + +S T L +A L
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 58.1 bits (140), Expect = 4e-09
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 562 AIVGNQLEVFNHLINSNADITMYKN--------DSPLHLACATGN---MDMITYAMKY-F 609
A+ + D+T ++ LHLA + + + ++ + ++
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
+++ + G T LH E +K LL K + + G T L A K E
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA-SIEIANESGETPLDIAKRLKHEHCEE 255
Query: 670 ILLEA 674
+L +A
Sbjct: 256 LLTQA 260
Score = 55.8 bits (134), Expect = 2e-08
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 552 DNKGCTPLHCAIV---GNQLEVFNHLINSNADITMYKND--SPLHLACATGNMDMITYAM 606
T LH A+ L + + L+ ++ ++ + LH C T N + + +
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 607 KY-FDVNIENDIGETPLHVAVSHGCLEAVKFLLNTKN 642
+ + I N+ GETPL +A + L +
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262
Score = 55.8 bits (134), Expect = 2e-08
Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 16/157 (10%)
Query: 173 ETSKNPQSSDSNSDKALEEELTNIFKKFDLLE-HPEYLSHSQGYKAL---CWALQEKKTD 228
+K ++ + + L DL E P H AL ++
Sbjct: 127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 186
Query: 229 IAKLLVDKGVPLNLVDKGVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIE 288
I LV L+ + T LH L + E +KLLL A+
Sbjct: 187 IVDFLVQNSGNLDKQTG-----------KGSTALHYCCLTDNAECLKLLLRGKASIEIAN 235
Query: 289 KSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNV 325
+S T L +A ++ +LL + + + +V
Sbjct: 236 ES-GETPLDIAKRLKHEHCEELLTQALSGRFNSHVHV 271
Score = 55.4 bits (133), Expect = 3e-08
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 615 NDIGETPLHVAVSHG---CLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEIL 671
++ ET LH+AV L V FL+ + +++ +T GSTAL + C + +++L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224
Query: 672 LEANADVNLGDGT-YTPLYTALMKDPSLDIIKMLVKY 707
L A + + + + TPL A ++L +
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLK-HEHCEELLTQA 260
Score = 55.0 bits (132), Expect = 4e-08
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 754 NNRTALNFA---AFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEY 810
+ TAL+ A +L ++ FL++ + D K ++ L C E + LL
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 811 NADTNLRTIKHGSTALHTAAFHNQLDIIKLLLKY 844
A + + G T L A +LL +
Sbjct: 228 KASIEIAN-ESGETPLDIAKRLKHEHCEELLTQA 260
Score = 53.5 bits (128), Expect = 1e-07
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 647 HKTKDGSTALFFAC---YDKRLDLVEILLEANADVNLGDGTY-TPLYTALMKDPSLDIIK 702
+ + TAL A L +V+ L++ + +++ G T L+ + D + + +K
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD-NAECLK 222
Query: 703 MLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVE 742
+L++ A + + NE+ TPL A L +
Sbjct: 223 LLLRGKASIEIANESG--ETPLDIAKRLK-HEHCEELLTQ 259
Score = 50.0 bits (119), Expect = 2e-06
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 772 KFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLR-TIKHGSTALHTA- 829
++ K AD + + GL + ++ L + TALH A
Sbjct: 118 RYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV 177
Query: 830 --AFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIE 882
L I+ L++ + +++ + G A H C N + + LL ++IE
Sbjct: 178 RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 77.2 bits (190), Expect = 9e-15
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 251 YSRRIIETDTPLHSAILNSDIELVKLLLEKGAN-----PLAIEKSRNRTALHVAAIVE-- 303
++RR L +AI N D+ V G + P ++ LH+A V
Sbjct: 125 FARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ 184
Query: 304 -SVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGADINSGNDDGCT 362
S+ +V + G ++ + G T LH A + +K+LL A + + N+ G T
Sbjct: 185 ASLPLVDFIIQNGG--HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 242
Query: 363 PLFCA 367
L A
Sbjct: 243 ALDIA 247
Score = 62.6 bits (152), Expect = 3e-10
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 762 AAFGNNLDLLKFLLKAGADPDI------LDLKDTSPLLSSCR---QGLYEIVDTLLEYNA 812
A +L + G D + L + + Q +VD +++
Sbjct: 139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 198
Query: 813 DTNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVT 872
+ + G+TALH AA +NQ D +KLLLK A + ++ G+ A A + + +
Sbjct: 199 HLDAKA-ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 257
Query: 873 FLLDA 877
L A
Sbjct: 258 LLEQA 262
Score = 54.9 bits (132), Expect = 8e-08
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 10/110 (9%)
Query: 497 AIKNNHLEIFNLLLKLGADVAVKMKSNF------TCLHVACEFA---SIEMVSFLLSH-I 546
AI N L G D + LH+A + A S+ +V F++ +
Sbjct: 139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 198
Query: 547 GVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNADITMYKNDSPLHLACAT 596
++ + G T LH A + NQ + L+ A + L A
Sbjct: 199 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Score = 54.5 bits (131), Expect = 1e-07
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 243 VDKGVPLNYSRRIIETDTPLHSAILNSD---IELVKLLLEKGANPLAIEKSRNRTALHVA 299
D G PL + LH A+ ++ + LV +++ G + L + + TALH A
Sbjct: 156 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALHYA 214
Query: 300 AIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKIL 346
A+ D +KLL A V N AG T L IA ++ E ++L
Sbjct: 215 ALYNQPDCLKLLLKGRA--LVGTVNEAGETALDIARKKHHKECEELL 259
Score = 53.7 bits (129), Expect = 2e-07
Identities = 44/203 (21%), Positives = 66/203 (32%), Gaps = 16/203 (7%)
Query: 396 LHMASQFGNLEMVNYLLKH-------ININHQDKDGWTPL--TCSIKGQASLEVFHSIIE 446
L A +L V + + L + QASL + II+
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 447 AGADIKAKLMDGTTALHLACYFGNLAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEI 505
G + AK DG TALH A + + L+K + + N+ G+T + A K +H E
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 506 FNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVG 565
LL + A LHV + S + N +P
Sbjct: 256 EELLEQAQAGTFA------FPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTA 309
Query: 566 NQLEVFNHLINSNADITMYKNDS 588
+ L N I M D+
Sbjct: 310 SNSPGIEGLSNKEMRILMLGLDA 332
Score = 53.4 bits (128), Expect = 2e-07
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Query: 688 LYTALMKDPSLDIIKML---VKYGADVNLTNEACYYMTPLHYASYRGDCND--IARFLVE 742
L+TA+ L +++ +G + + LH A + + F+++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 743 ECNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYE 802
+ + + TAL++AA N D LK LLK A ++ + L + ++ E
Sbjct: 196 N-GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254
Query: 803 IVDTL 807
+ L
Sbjct: 255 CEELL 259
Score = 51.8 bits (124), Expect = 7e-07
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 615 NDIGETPLHVAVSH---GCLEAVKFLL-NTKNIDVNHKTKDGSTALFFACYDKRLDLVEI 670
E LH+AV L V F++ N ++ K DG+TAL +A + D +++
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNTALHYAALYNQPDCLKL 225
Query: 671 LLEANADVNLGDGT 684
LL+ A V +
Sbjct: 226 LLKGRALVGTVNEA 239
Score = 48.0 bits (114), Expect = 1e-05
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 822 GSTALHTAAFHNQ---LDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAG 878
LH A L ++ +++ ++A+ G A H A D + LL
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230
Query: 879 SNIEKATK 886
+ + +
Sbjct: 231 ALVGTVNE 238
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 71.7 bits (175), Expect = 3e-13
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 766 NNLDLLKFLLKAGADPDIL--DLKDTSPLLSSCRQGLYEIVDTLLEYNADTNLRTIKHGS 823
+L + L GAD + + + +PL+ + + LL+ A+ N G
Sbjct: 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD-SAGR 269
Query: 824 TALHTAAFHNQLDIIKLLLKYNADINAEDKYGKIAFHSACQAKNWDIVTFLLDAGSNIE 882
LH A + L LK AD+ A D G+ A + N DIVT L A
Sbjct: 270 GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREA 328
Score = 63.6 bits (154), Expect = 1e-10
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 1/136 (0%)
Query: 290 SRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDK 349
+ S+ + +GA+ + TPL A L + LL
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257
Query: 350 GADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVP-EGERTALHMASQFGNLEMV 408
GA++N + G PL A + + G DL R L +A + N ++V
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Query: 409 NYLLKHININHQDKDG 424
L + G
Sbjct: 318 TLLRLAKMREAEAAQG 333
Score = 61.3 bits (148), Expect = 6e-10
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 3/134 (2%)
Query: 413 KHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLM--DGTTALHLACYFGN 470
+ + + L + SL + GAD+ D T L A +
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 471 LAMVNYLVKH-IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHV 529
L +L+++ ++N + G+ P++ A H + L LK GAD+ + L +
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 530 ACEFASIEMVSFLL 543
A E A+ ++V+ L
Sbjct: 308 AMETANADIVTLLR 321
Score = 55.9 bits (134), Expect = 3e-08
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Query: 695 DPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIARFLVEECNADITLRNFN 754
PSL + + +GADVN N TPL A+ FL++ A++ +
Sbjct: 210 PPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL-LACEFLLQN-GANVNQADSA 267
Query: 755 NRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSPLLSSCRQGLYEIVDTLLE 809
R L+ A + L LK GAD D + PL + +IV L
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 54.8 bits (131), Expect = 7e-08
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 7/126 (5%)
Query: 618 GETPLHVAVSHGCLEAVKFLL-NTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANA 676
G + L + L + +++ + +D +T L A L E LL+ A
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 677 DVNLGDG-TYTPLYTALMKDPSLDIIKMLVKYGADVNLTNEACYYMTPLHYASYRG--DC 733
+VN D PL+ A + + + + +K GAD+ + PL A D
Sbjct: 260 NVNQADSAGRGPLHHATILGHT-GLACLFLKRGADLGARDSEG--RDPLTIAMETANADI 316
Query: 734 NDIARF 739
+ R
Sbjct: 317 VTLLRL 322
Score = 54.0 bits (129), Expect = 1e-07
Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 555 GCTPLHCAIVGNQLEVFNHLINSNADITM----YKNDSPLHLACATGNMDMITYAMKY-F 609
G + L + AD+ N +PL A A ++ + ++
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 610 DVNIENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVE 669
+VN + G PLH A G L + D+ + +G L A D+V
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFL-KRGADLGARDSEGRDPLTIAMETANADIVT 318
Query: 670 ILLEA------NADVNLGDGTYTPLYTALMKDPSLD 699
+L A A GD TY + +D SL
Sbjct: 319 LLRLAKMREAEAAQGQAGDETYLD----IFRDFSLM 350
Score = 52.5 bits (125), Expect = 3e-07
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 497 AIKNNHLEIFNLLLKLGADV--AVKMKSNFTCLHVACEFASIEMVSFLLSH-IGVNLQDN 553
+ L L GADV + N T L A S+ FLL + VN D+
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266
Query: 554 KGCTPLHCAIVGNQLEVFNHLINSNAD--ITMYKNDSPLHLACATGNMDMIT 603
G PLH A + + + AD + PL +A T N D++T
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318
Score = 51.3 bits (122), Expect = 9e-07
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 792 LLSSCRQGLYEIVDTLLEYNADTNLRT-IKHGSTALHTAAFHNQLDIIKLLLKYNADINA 850
+S + L + AD N + +T L A N L + LL+ A++N
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 851 EDKYGKIAFHSACQAKNWDIVTFLLDAGSNIEKA 884
D G+ H A + + L G+++
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Score = 49.0 bits (116), Expect = 4e-06
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 614 ENDIGETPLHVAVSHGCLEAVKFLLNTKNIDVNHKTKDGSTALFFACYDKRLDLVEILLE 673
TPL A + L A +FLL +VN G L A L + L+
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Query: 674 ANADVNLGDGT-YTPLYTALMKDPSLDIIKMLV 705
AD+ D PL A M+ + DI+ +L
Sbjct: 290 RGADLGARDSEGRDPLTIA-METANADIVTLLR 321
Score = 48.6 bits (115), Expect = 5e-06
Identities = 37/196 (18%), Positives = 60/196 (30%), Gaps = 17/196 (8%)
Query: 137 KTPAEKNSQAKTNGVPTKKPKVTQDQWNIVTVSDKKETSKNPQSSDSNSDKALE-EELTN 195
+ + + + G P PK + S + S++ S + +
Sbjct: 153 EIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPS 212
Query: 196 IFKKFDLLEHPEYL----SHSQGYKALCWALQEKKTDIAKLLVDKGVPLNLVDKGVPLNY 251
+ D L H + L A + L+ G +N D
Sbjct: 213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS------ 266
Query: 252 SRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTALHVAAIVESVDIVKLL 311
PLH A + L L L++GA+ S R L +A + DIV LL
Sbjct: 267 -----AGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLL 320
Query: 312 FDYGAEKSVNVQNVAG 327
++ Q AG
Sbjct: 321 RLAKMREAEAAQGQAG 336
Score = 48.2 bits (114), Expect = 9e-06
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 481 IDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKSNFTCLHVACEFASIEMVS 540
++ + TP+ A N L LL+ GA+V + LH A +
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285
Query: 541 FLLSHIGVNLQ--DNKGCTPLHCAIVGNQLEV 570
L G +L D++G PL A+ ++
Sbjct: 286 LFLKR-GADLGARDSEGRDPLTIAMETANADI 316
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 1e-09
Identities = 92/743 (12%), Positives = 204/743 (27%), Gaps = 261/743 (35%)
Query: 187 KALEEELTNIFKK--FD-LLEHPEYLSHSQGYKALCWALQEKKTDIAKLLVDKGVPLN-- 241
K +++ +I K D ++ + +S + L W L K+ ++ + V++ + +N
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVS--GTLR-LFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 242 -LVDK-----GVPLNYSRRIIETDTPLHSAILNSDIELVKLLLEKGANPLAIEKSRNRTA 295
L+ P +R IE L+ N + K + + L + R A
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQVFAKYNVSRLQPYLKL-----RQA 143
Query: 296 LHVAAIVESVDIVKLLFDYG---AEKSVNVQNVAGLTPLHIACRRKCLEIVKILLDKGAD 352
L + K + G + K+ +V C ++ + K
Sbjct: 144 L------LELRPAKNVLIDGVLGSGKTWVALDV---------CLSY--KVQCKMDFKIFW 186
Query: 353 INSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFGNLEMVNYLL 412
+N N C + LE+ L P + H ++ + + L
Sbjct: 187 LNLKN--------CNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 413 KHININHQDK-------DGWTPLTCSIKGQASLEVFHSIIEAGADIKAK-LMDGTTALHL 464
+ + + + + F ++ K L+ TT
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKA--------WNAF--------NLSCKILL--TTR--- 273
Query: 465 ACYFGNLAMVNYL----VKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKM 520
+ ++L HI ++ + + TP E+ +LLLK
Sbjct: 274 -----FKQVTDFLSAATTTHISLD-HHSMTLTP---------DEVKSLLLK--------- 309
Query: 521 KSNFTCLHVACEFASIEMVSFLLSHIGVNLQDNKGCTPLHCAIVGNQLEVFNHLINSNAD 580
L + E+++ P +I+ + ++
Sbjct: 310 -----YLDCRPQDLPREVLT---------------TNPRRLSIIAESIRDGLATWDN--- 346
Query: 581 ITMYKNDSPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHGCLEAVKFLLNT 640
+K+ N D +T ++ L ++
Sbjct: 347 ---WKHV----------NCDKLTTIIE---------------------SSLNVLE----- 367
Query: 641 KNIDVNHKTKDGSTALFFACYDKRLDLVEILLEANADVNLGDGTYTPLYTALMKDPSLDI 700
A + +D L + ++ + ++ ++K + +
Sbjct: 368 -------------PAEYRKMFD---RLS-VFPP---SAHIPTILLSLIWFDVIKSDVMVV 407
Query: 701 IKMLVKYGADVNLTNEACYYMTPLHYASYRGDCNDIA---RFLVEE-------CNADITL 750
+ L KY V + P Y + + R +V+ + D+
Sbjct: 408 VNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 751 RNFNN-------------RTALNFAAFGNN-LDLLKFL------------LKAGADPDIL 784
+ F LD +FL +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 785 DLK-------DTSPLLSSCRQGLYEIVDTLLEY--NADTNLRTIKHGSTALHTAAFHNQL 835
LK D P +V+ +L++ + NL K+
Sbjct: 526 QLKFYKPYICDNDPKYE-------RLVNAILDFLPKIEENLICSKY-------------T 565
Query: 836 DIIKLLLKYNADINAEDKYGKIA 858
D++++ L + E+ + ++
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQ 588
Score = 57.9 bits (139), Expect = 2e-08
Identities = 62/489 (12%), Positives = 140/489 (28%), Gaps = 161/489 (32%)
Query: 78 RMVKEKLGEMDSNEENEEEEEEERGGKRSKKRKRKAQETL-DLDDLGDIVAGRKGNWSIT 136
++ D + + + R + + + L L ++ +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----------QN-- 255
Query: 137 KTPAEK-NSQAKTNGVPTKKPKVTQDQWNIVTVSDKKETSKNPQSSDSNSDKALEEELTN 195
N K + T+ +VT + ++ + S D +S +E+ +
Sbjct: 256 AKAWNAFNLSCKIL-LTTRFKQVT----DFLSAATTTHI-----SLDHHSMTLTPDEVKS 305
Query: 196 IFKKF------DLLE-----HP-----------EYLSHSQGYKALCWALQEKKTDIAKLL 233
+ K+ DL +P + L+ +K + +K T I +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---NCDKLTTIIESS 362
Query: 234 VDKGVPLNLVDKGVPLNYSRR-----IIETDTPLHSAIL-----NSDIELVKLLLEKGAN 283
++ L P Y + + + + +L + V +++ K
Sbjct: 363 LNV---LE------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 284 PLAIEKSRNRTALHVAAIVESVDIVKLLFDYGAEKSVNVQNVAGLTPLHIACRRKCLEIV 343
+EK + + I + + + LH R ++
Sbjct: 414 YSLVEKQPKESTIS---------IPSIYLEL-------KVKLENEYALH----RSIVDHY 453
Query: 344 KILLDKGADINSGNDDGCTPLFCAIAQNCLEVFNYLVNHGCDLSVPEGERTALHMASQFG 403
I K D D P + Y +H H+
Sbjct: 454 NIP--KTFD-----SDDLIP---------PYLDQYFYSH-----------IGHHL-KNIE 485
Query: 404 NLEMVNYLLKHININHQDKDGWTPLTCSIKGQASLEVFHSIIEAGADIKAKLMDGTTALH 463
+ E + L + + ++ + ++ K+ +TA +
Sbjct: 486 HPERMT-LFRMVFLD----FRF-------------------------LEQKIRHDSTAWN 515
Query: 464 LACYFGN-LAMVNYLVKHIDINSENDLGKTPIYFAIKNNHLEIFNLLLKLGADVAVKMKS 522
+ N L + + +I +ND P Y + N I + L K+ ++ + S
Sbjct: 516 ASGSILNTLQQLKFYKPYI---CDND----PKYERLVN---AILDFLPKIEENL---ICS 562
Query: 523 NFTCL-HVA 530
+T L +A
Sbjct: 563 KYTDLLRIA 571
Score = 38.7 bits (89), Expect = 0.011
Identities = 45/319 (14%), Positives = 94/319 (29%), Gaps = 84/319 (26%)
Query: 6 GCVDVMLP--VIKIDPERYIQVLLE-IKKEINR----KSDNLSKLLTKF-SSLKRGEYPY 57
C LP V+ +P R + ++ E I+ + K N KL T SSL E P
Sbjct: 312 DCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PA 369
Query: 58 GLKKIKRGPRLHKEI-----DSAVERMVKEKL-GEMDSNEENEEEEEEERGGKRSKKRKR 111
+K + + + + ++ + ++ +++ + K S K+
Sbjct: 370 EYRK------MFDRLSVFPPSAHIPTILLSLIWFDV---IKSDVMVVVNKLHKYSLVEKQ 420
Query: 112 KAQETLDLDDLGDIVAGRKGNWSITKTPAEKNSQAKTNGVPTKKPKVTQDQWNIVTVSDK 171
+ T+ + + + K + D +NI D
Sbjct: 421 PKESTISIPSI------------------YLELKVKLENEYALHRSIV-DHYNIPKTFDS 461
Query: 172 KETSKNPQSSDSNS------DKALEEELTNIFKKFDLLEHPEYLSHSQGYKALCWALQEK 225
+ S E +F+ +L + L++K
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-------FLD-------FRF-LEQK 506
Query: 226 KTDIAKLLVDKGVPLNLVDKGVPL-----NYSRRIIETDTPLHSAILNSDIELVKLLLEK 280
+ N + Y I + D P + ++N+ ++ L +
Sbjct: 507 -------IRHDSTAWNASGSILNTLQQLKFYKPYICDND-PKYERLVNA---ILDFLPKI 555
Query: 281 GANPLAIEKSRNRTALHVA 299
N + S+ L +A
Sbjct: 556 EEN---LICSKYTDLLRIA 571
Score = 34.1 bits (77), Expect = 0.28
Identities = 50/323 (15%), Positives = 96/323 (29%), Gaps = 104/323 (32%)
Query: 744 CNADITLRNFNNRTALNFAAFGNNLDLLKFLLKAGADPDILDLKDTSP--------LLSS 795
DI L F + NF + D+ K +L I+ KD LLS
Sbjct: 17 QYKDI-LSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 796 CRQGLYEIVDTLLEYNAD---TNLRTIKHGSTALHTAAFHNQLDIIKLLLKYNADINAED 852
+ + + V+ +L N + ++T + ++ T + Q D + YN D
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRL-----YN-DNQVFA 127
Query: 853 KYGKIAFHSACQAKNWDIVTFLLDAGSNIEKATKYRMTFESSKVVEKHVAKLRAA--NIY 910
KY N+ R + KLR A +
Sbjct: 128 KY-------------------------NV-----SR---------LQPYLKLRQALLELR 148
Query: 911 VDKNIMV--------QFLTTQV-NDFYEECLRE-----VALLKCEKPGD----QEKVSFY 952
KN+++ ++ V + +C + + L C P +K+ Y
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LY 207
Query: 953 DILSKHPAQVEFYAKNPQISNCVKWKDLNL----QFP----IYGDV----------ICCK 994
I ++ + + + ++ + L + + +V + CK
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 995 ------FTKVLNSLKNKNKAKYR 1011
F +V + L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHIS 290
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.5 bits (99), Expect = 2e-04
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 20/83 (24%)
Query: 62 IKRGPRLHKEIDSAVE-RMVKEK-LGEMDSNEENEEEEEEERGGK--------------R 105
I + RL +E +S + R + K L E+D+ + E+E E+ K +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 106 SKKRKRKAQETL--DLDDLGDIV 126
+K R A + D DI+
Sbjct: 134 NKINNRIADKAFYQQPDA--DII 154
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation;
3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Length = 86
Score = 35.3 bits (81), Expect = 0.012
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 70 KEIDSAVERMVKEKLG----EMDSNEENEEEEEEERGGKRSKKRKRKAQETLDLDDLGDI 125
+E + EKL E E E EER K + R+ + +D ++L +
Sbjct: 22 RESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNS 81
Query: 126 VAGRK 130
+A K
Sbjct: 82 MAAAK 86
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 33.1 bits (75), Expect = 0.34
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 76 VERMVKEKLGEMDSNEENEEEEEEERGGKRSKKRKRKAQETL 117
+E ++ EK G+ +N + + G S +R ++ +++L
Sbjct: 202 IEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQSL 243
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 33.3 bits (77), Expect = 0.47
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 50 LKRGEYPYGLKKIKRG-PRLHKEIDSAVERMVKEKLGEMDSNEENEEEEEEERGGKRSKK 108
L+ P LK++++ + KE D+AV+ EK + + E E+ E K K+
Sbjct: 387 LRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASL-RDTEQRLREQVEDTKKSWKE 445
Query: 109 RKRKAQETLDLDDLGDIVA 127
++ + + +DD+ +V+
Sbjct: 446 KQGQENSEVTVDDIAMVVS 464
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like
fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus
epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Length = 181
Score = 32.2 bits (74), Expect = 0.53
Identities = 4/30 (13%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 697 SLDIIKMLVKYGADVN--LTNEACYYMTPL 724
I L ++ +VN + + ++
Sbjct: 18 INHYIVELKQHFDEVNILFSPSSKNFINTD 47
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center
for structural genomics of infec diseases, csgid,
oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus}
Length = 175
Score = 31.8 bits (73), Expect = 0.69
Identities = 4/30 (13%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 697 SLDIIKMLVKYGADVN--LTNEACYYMTPL 724
I L +VN + ++
Sbjct: 21 ISHYIIELKSKFDEVNVIASTNGRKFINGE 50
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 31.6 bits (71), Expect = 1.1
Identities = 0/34 (0%), Positives = 0/34 (0%), Gaps = 4/34 (11%)
Query: 91 EENEEEEEEE----RGGKRSKKRKRKAQETLDLD 120
+ E
Sbjct: 177 TGKQIVFEIPSETH 210
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency
decline, ATP-binding, DNA DAMA repair, DNA-binding,
helicase, hydrolase; 1.95A {Escherichia coli} PDB:
2b2n_A* 4dfc_A
Length = 483
Score = 32.0 bits (73), Expect = 1.2
Identities = 6/26 (23%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 103 GKRSKKRKRKAQETLDLDDL--GDIV 126
G+R +R++ ++ T++ D L +
Sbjct: 451 GERVARRRQDSRRTINPDTLKLAAAL 476
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP:
c.34.1.1
Length = 194
Score = 31.0 bits (71), Expect = 1.3
Identities = 2/30 (6%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 697 SLDIIKMLVKYGADVN--LTNEACYYMTPL 724
+ + ++ +T A +
Sbjct: 24 ISSYLLYFKSFFKEIRVVMTKTAEDLIPAH 53
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase
inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus
aureus}
Length = 329
Score = 31.3 bits (70), Expect = 1.7
Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 10/187 (5%)
Query: 14 VIKIDPERYIQVLLEIKKEINRKSDNLSKLLTKFSSLKRGEYPYGLKKIKRGPRLHKEID 73
+ + Y ++ +K + ++ K+ + LK K R L +
Sbjct: 111 IEDLTMREYNELTESLKSAVKDFEKDVEKIENQHHDLKPFTDEMEEKATSRVDDLANKAY 170
Query: 74 SAVERMVKEKLGEMDSNEE--------NEEEEEEERGGKRSKKRKRKAQETLDLDDLGDI 125
S V++ + ++ E +E++ +R +K K E++ D +
Sbjct: 171 SVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIET 230
Query: 126 VAGRKGNWSITKTPAEKNSQAKTNGVPTKKPKVTQDQWNIVTVSDKKETSKNPQSSDSNS 185
+ GN IT + K+ + K T++ S K +T K S++ S
Sbjct: 231 GLNKPGN--ITSYDSSKHHYKNHSEGFEALVKETREAVANADESWKTKTVKKYGESETKS 288
Query: 186 DKALEEE 192
EE
Sbjct: 289 PVVKEEN 295
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 31.2 bits (71), Expect = 2.3
Identities = 10/103 (9%), Positives = 25/103 (24%), Gaps = 7/103 (6%)
Query: 20 ERYIQVLLEIKKEINRKSDNLSKLLTKFSSLKRGEYPYGLKKIKRGPRLHKEIDSAVERM 79
+ + K NL + SL+ + + ++
Sbjct: 900 YLGSNETGDSITAVQAKLKNLEAFDGECQSLEG-------QSNSDLLSILAQLTELNYNG 952
Query: 80 VKEKLGEMDSNEENEEEEEEERGGKRSKKRKRKAQETLDLDDL 122
V E D+ + + + + ++DL
Sbjct: 953 VPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG,
structural protein structure initiative, midwest center
for structural genomics; 2.10A {Bacillus halodurans}
Length = 201
Score = 30.1 bits (68), Expect = 3.0
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 697 SLDIIKMLVKYGADVN--LTNEACYYMTPL 724
L ++ LV+ GA V +T+ T
Sbjct: 24 VLPQMERLVELGAKVTPFVTHTVQTTDTKF 53
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet
domain, structural genomics, israel structural
proteomics center, ISPC; 2.05A {Mus musculus}
Length = 448
Score = 30.0 bits (68), Expect = 5.0
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 489 LGKTPIYFAIK-NNHLEIFNLLLKLGA--DVA 517
+ + ++ +K N+ + +L LG +
Sbjct: 59 VAQIKPFYTVKCNSTPAVLEILAALGTGFACS 90
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
vulnificus} PDB: 2plk_A*
Length = 419
Score = 29.5 bits (67), Expect = 5.9
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 494 IYFAIK-NNHLEIFNLLLKLGA--DVA 517
+++A+K H + LL GA D+A
Sbjct: 81 LHYALKPLPHPVVVRTLLAEGASFDLA 107
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Bacillus cereus}
Length = 207
Score = 28.9 bits (65), Expect = 6.2
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 698 LDIIKMLVKYGADVN--LTNEACYYMTPLHYAS 728
+ ++ L+ GA+V ++ T +
Sbjct: 23 MPHLEKLIAEGAEVRPVVSYTVQSTNTRFGEGA 55
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 29.4 bits (66), Expect = 6.3
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 21/86 (24%)
Query: 717 ACYYMTPLHYASYRGDCNDIARFLVEECNADITL----RNFN-NRTALNFAAFGNNLDLL 771
A + H RG+ +IAR +EE D+ L R+F + + N L+
Sbjct: 174 AAFAA---HVED-RGNQTEIARQYIEETQPDVILGGQRRDFEADAS--------NGGTLV 221
Query: 772 KFLLKAGA----DPDILDLKDTSPLL 793
G LD D P+L
Sbjct: 222 DAARDNGYTIAETAAELDAVDDPPVL 247
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY
beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei}
SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A*
1njj_A*
Length = 425
Score = 29.5 bits (67), Expect = 6.8
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 489 LGKTPIYFAIK-NNHLEIFNLLLKLGA--DVA 517
L + ++A+K N+ + L LG D A
Sbjct: 59 LPRVTPFYAVKCNDDWRVLGTLAALGTGFDCA 90
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 29.3 bits (65), Expect = 7.0
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 588 SPLHLACATGNMDMITYAMKYFDVNIENDIGETPLHVAVSHG 629
PL + + K DI T ++ S G
Sbjct: 484 GPLDYESLQQELALKETVWKKVSPESNEDISTTVVYRMESLG 525
>2o8g_I IPP-2, protein phosphatase inhibitor 2; hydrolase-inhibitor comple;
2.50A {Mus musculus} PDB: 2o8a_I
Length = 206
Score = 28.6 bits (63), Expect = 8.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 68 LHKEIDSAVERMVKEKLGEMDSNEENEEEEE-EERGGKRSKKRKRKA 113
L K++ +A K + E +S+ E + + EER KR + KRK
Sbjct: 101 LAKKLAAAEGSEPKYRTREQESSGEEDNDLSPEEREKKRQFEMKRKL 147
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6
sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB:
3usz_A 3f93_A 3f94_A 3ut0_A
Length = 822
Score = 29.3 bits (66), Expect = 8.9
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 25/122 (20%)
Query: 55 YPYGLKKIKRGPRLHKEIDSAVERM--VKEKLGEMDSNEENEEEEEEERGGKRSKKRKRK 112
Y +K++K G I+ AV R K + G ++ + E + + + +
Sbjct: 330 YHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTL 389
Query: 113 AQE--------------TLDLDDLGDI-VAGRK--------GNWSITKTPAEKNSQAKTN 149
A+E L + I VAG+ G WS++ + + N
Sbjct: 390 AREAVRKSLVLLKNNESILPIKASSRILVAGKGANAINMQAGGWSVSWQGTDNTNSDFPN 449
Query: 150 GV 151
Sbjct: 450 AT 451
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,140,262
Number of extensions: 939974
Number of successful extensions: 7982
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3043
Number of HSP's successfully gapped: 706
Length of query: 1011
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 908
Effective length of database: 3,825,930
Effective search space: 3473944440
Effective search space used: 3473944440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)