Query psy8111
Match_columns 135
No_of_seqs 221 out of 1382
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 18:53:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 1.1E-36 3.7E-41 212.2 9.5 130 3-134 8-186 (192)
2 2xqn_T Testin, TESS; metal-bin 100.0 1.2E-35 4E-40 194.4 7.9 121 2-123 3-126 (126)
3 2xjy_A Rhombotin-2; oncoprotei 100.0 5.7E-36 1.9E-40 197.0 5.6 122 2-124 2-129 (131)
4 1rut_X Flinc4, fusion protein 100.0 2.3E-34 7.8E-39 199.9 5.1 128 3-131 6-139 (188)
5 2rgt_A Fusion of LIM/homeobox 100.0 1.7E-32 5.9E-37 187.6 6.7 122 3-126 7-131 (169)
6 2jtn_A LIM domain-binding prot 100.0 5.2E-32 1.8E-36 187.1 8.5 118 3-122 61-181 (182)
7 2cup_A Skeletal muscle LIM-pro 100.0 3.6E-30 1.2E-34 162.2 5.9 94 3-97 6-101 (101)
8 2ehe_A Four and A half LIM dom 99.9 4E-26 1.4E-30 138.6 4.4 81 48-128 1-81 (82)
9 1m3v_A FLIN4, fusion of the LI 99.9 5.6E-26 1.9E-30 147.7 2.8 107 2-124 5-116 (122)
10 1x3h_A Leupaxin; paxillin fami 99.9 1E-24 3.4E-29 131.8 5.3 79 48-128 1-79 (80)
11 2cuq_A Four and A half LIM dom 99.9 1.2E-24 3.9E-29 131.5 5.3 79 48-128 1-79 (80)
12 1x63_A Skeletal muscle LIM-pro 99.9 2.2E-24 7.4E-29 130.9 5.5 81 48-128 1-81 (82)
13 2dlo_A Thyroid receptor-intera 99.9 3.7E-24 1.3E-28 129.6 5.3 78 48-128 2-80 (81)
14 1j2o_A FLIN2, fusion of rhombo 99.9 1.5E-23 5.1E-28 134.7 3.7 102 2-124 3-108 (114)
15 2egq_A FHL1 protein; LIM domai 99.9 9.3E-23 3.2E-27 122.2 4.7 74 48-121 1-77 (77)
16 1x6a_A LIMK-2, LIM domain kina 99.9 1.6E-22 5.4E-27 122.4 5.4 79 48-128 1-81 (81)
17 2cup_A Skeletal muscle LIM-pro 99.9 2.2E-22 7.6E-27 126.4 5.4 76 60-135 3-78 (101)
18 2xqn_T Testin, TESS; metal-bin 99.8 1.6E-21 5.6E-26 127.0 5.3 74 61-135 2-75 (126)
19 1x68_A FHL5 protein; four-and- 99.8 2.7E-21 9.1E-26 115.6 4.5 72 59-130 2-75 (76)
20 1wyh_A SLIM 2, skeletal muscle 99.8 6.7E-21 2.3E-25 112.6 4.9 70 59-128 2-71 (72)
21 1x4k_A Skeletal muscle LIM-pro 99.8 6.1E-21 2.1E-25 112.8 4.8 69 60-128 3-71 (72)
22 1iml_A CRIP, cysteine rich int 99.8 7.1E-21 2.4E-25 113.7 5.1 71 63-134 1-72 (76)
23 1m3v_A FLIN4, fusion of the LI 99.8 4.2E-21 1.4E-25 124.6 3.9 75 60-135 3-81 (122)
24 1iml_A CRIP, cysteine rich int 99.8 3.3E-20 1.1E-24 110.8 5.0 70 3-73 1-72 (76)
25 1a7i_A QCRP2 (LIM1); LIM domai 99.8 1.4E-20 4.8E-25 113.8 3.4 72 61-133 6-77 (81)
26 1g47_A Pinch protein; LIM doma 99.8 3E-20 1E-24 111.1 4.0 68 60-127 9-76 (77)
27 2d8z_A Four and A half LIM dom 99.8 5.4E-20 1.9E-24 108.2 4.8 67 60-128 3-69 (70)
28 2cur_A Skeletal muscle LIM-pro 99.8 4.3E-20 1.5E-24 108.3 4.2 67 60-128 3-69 (69)
29 2jtn_A LIM domain-binding prot 99.8 9.2E-20 3.2E-24 125.6 6.4 86 48-135 43-131 (182)
30 2dar_A PDZ and LIM domain prot 99.8 8E-20 2.7E-24 112.5 5.4 73 54-128 17-89 (90)
31 1v6g_A Actin binding LIM prote 99.8 8.4E-20 2.9E-24 110.3 4.8 74 49-124 2-76 (81)
32 1x68_A FHL5 protein; four-and- 99.8 1.1E-19 3.6E-24 108.6 4.5 67 2-69 5-75 (76)
33 1x4l_A Skeletal muscle LIM-pro 99.8 1.6E-19 5.6E-24 106.7 5.0 67 60-126 3-71 (72)
34 2cu8_A Cysteine-rich protein 2 99.8 1.6E-19 5.3E-24 107.9 4.9 69 59-128 6-75 (76)
35 2cur_A Skeletal muscle LIM-pro 99.8 8.9E-20 3E-24 107.0 3.2 64 3-67 6-69 (69)
36 1a7i_A QCRP2 (LIM1); LIM domai 99.8 1.4E-19 4.7E-24 109.4 4.0 69 3-72 8-77 (81)
37 1nyp_A Pinch protein; LIM doma 99.8 2E-19 6.7E-24 104.6 4.3 64 60-125 3-66 (66)
38 2xjy_A Rhombotin-2; oncoprotei 99.8 1.9E-19 6.6E-24 117.8 4.8 73 62-135 2-78 (131)
39 2d8z_A Four and A half LIM dom 99.8 1.4E-19 4.8E-24 106.4 3.4 64 3-67 6-69 (70)
40 2dj7_A Actin-binding LIM prote 99.8 4.2E-19 1.4E-23 107.1 4.8 65 62-128 15-79 (80)
41 2cu8_A Cysteine-rich protein 2 99.8 5.5E-19 1.9E-23 105.5 4.9 65 2-67 9-75 (76)
42 2dar_A PDZ and LIM domain prot 99.8 3.1E-19 1.1E-23 109.9 3.6 63 3-66 26-88 (90)
43 1wyh_A SLIM 2, skeletal muscle 99.8 4.5E-19 1.5E-23 104.7 3.9 64 2-66 5-70 (72)
44 1nyp_A Pinch protein; LIM doma 99.8 4.4E-19 1.5E-23 103.1 3.7 62 2-64 5-66 (66)
45 2dj7_A Actin-binding LIM prote 99.8 8.2E-19 2.8E-23 105.8 4.9 63 3-67 16-79 (80)
46 2rgt_A Fusion of LIM/homeobox 99.8 7.3E-19 2.5E-23 119.8 5.1 72 62-135 6-77 (169)
47 1x3h_A Leupaxin; paxillin fami 99.7 5.9E-19 2E-23 106.2 3.4 64 3-67 16-79 (80)
48 1x4k_A Skeletal muscle LIM-pro 99.7 7.4E-19 2.5E-23 103.7 3.7 63 3-66 6-70 (72)
49 2l3k_A Rhombotin-2, linker, LI 99.7 6E-19 2E-23 114.5 3.2 78 57-134 1-81 (123)
50 2ehe_A Four and A half LIM dom 99.7 1.5E-18 5.1E-23 105.0 4.7 63 3-66 16-80 (82)
51 1x61_A Thyroid receptor intera 99.7 1.1E-18 3.9E-23 103.0 4.0 69 60-129 3-71 (72)
52 1j2o_A FLIN2, fusion of rhombo 99.7 1.3E-18 4.6E-23 111.5 4.5 68 62-130 3-72 (114)
53 2d8y_A Eplin protein; LIM doma 99.7 2.7E-18 9.2E-23 105.9 5.7 70 60-130 13-82 (91)
54 3f6q_B LIM and senescent cell 99.7 1.1E-18 3.8E-23 102.8 3.7 67 57-123 6-72 (72)
55 2dlo_A Thyroid receptor-intera 99.7 9.1E-19 3.1E-23 105.7 3.4 64 3-67 16-80 (81)
56 1x4l_A Skeletal muscle LIM-pro 99.7 1.2E-18 4.1E-23 102.9 3.7 62 3-65 6-71 (72)
57 2cuq_A Four and A half LIM dom 99.7 1.2E-18 4.2E-23 104.8 3.8 63 3-66 16-78 (80)
58 1rut_X Flinc4, fusion protein 99.7 9.4E-19 3.2E-23 121.2 2.7 75 60-135 3-81 (188)
59 2d8x_A Protein pinch; LIM doma 99.7 2.4E-18 8.1E-23 101.1 4.1 62 3-65 6-67 (70)
60 2cor_A Pinch protein; LIM doma 99.7 5.2E-18 1.8E-22 102.0 5.6 65 60-127 13-77 (79)
61 1x64_A Alpha-actinin-2 associa 99.7 2.7E-18 9.3E-23 105.4 4.3 63 3-66 26-88 (89)
62 2d8x_A Protein pinch; LIM doma 99.7 4.4E-18 1.5E-22 99.9 4.9 65 61-127 4-68 (70)
63 1wig_A KIAA1808 protein; LIM d 99.7 4.5E-18 1.5E-22 100.8 4.6 64 60-125 3-67 (73)
64 1g47_A Pinch protein; LIM doma 99.7 2.4E-18 8.3E-23 102.8 3.3 63 3-66 12-76 (77)
65 1x64_A Alpha-actinin-2 associa 99.7 6.1E-18 2.1E-22 103.8 5.2 66 61-128 24-89 (89)
66 2iyb_E Testin, TESS, TES; LIM 99.7 4.6E-18 1.6E-22 98.6 4.0 61 61-121 1-64 (65)
67 1wig_A KIAA1808 protein; LIM d 99.7 7.5E-18 2.6E-22 99.8 5.0 59 3-62 6-65 (73)
68 2cor_A Pinch protein; LIM doma 99.7 6.2E-18 2.1E-22 101.7 4.3 61 3-65 16-76 (79)
69 1x62_A C-terminal LIM domain p 99.7 1.1E-18 3.8E-23 104.9 0.7 63 3-66 16-78 (79)
70 1x62_A C-terminal LIM domain p 99.7 2.5E-18 8.6E-23 103.3 2.0 64 62-127 15-78 (79)
71 1x63_A Skeletal muscle LIM-pro 99.7 8.2E-18 2.8E-22 101.6 4.0 63 3-66 16-80 (82)
72 2iyb_E Testin, TESS, TES; LIM 99.7 2.7E-17 9.3E-22 95.3 3.4 57 3-60 3-64 (65)
73 2d8y_A Eplin protein; LIM doma 99.7 2.5E-17 8.6E-22 101.4 2.8 63 3-66 16-79 (91)
74 1b8t_A Protein (CRP1); LIM dom 99.7 4.6E-17 1.6E-21 113.0 4.4 69 4-73 117-186 (192)
75 1x6a_A LIMK-2, LIM domain kina 99.7 3.7E-17 1.3E-21 98.5 3.2 63 3-66 16-80 (81)
76 1x61_A Thyroid receptor intera 99.7 3.9E-17 1.3E-21 96.3 2.9 59 3-62 6-66 (72)
77 2l4z_A DNA endonuclease RBBP8, 99.6 1.1E-16 3.7E-21 103.9 4.0 63 60-123 59-123 (123)
78 2co8_A NEDD9 interacting prote 99.6 1.2E-16 4E-21 96.7 3.6 65 62-127 15-81 (82)
79 2egq_A FHL1 protein; LIM domai 99.6 1.2E-16 4.1E-21 95.3 3.0 56 3-59 16-76 (77)
80 3f6q_B LIM and senescent cell 99.6 1.5E-16 5.1E-21 93.6 2.9 60 2-62 11-72 (72)
81 2co8_A NEDD9 interacting prote 99.6 2.3E-16 7.9E-21 95.4 3.7 61 3-64 16-79 (82)
82 2l3k_A Rhombotin-2, linker, LI 99.6 8.2E-16 2.8E-20 99.6 6.3 69 4-73 10-81 (123)
83 2l4z_A DNA endonuclease RBBP8, 99.6 1.8E-16 6.1E-21 102.8 2.1 59 3-62 62-123 (123)
84 1v6g_A Actin binding LIM prote 99.5 6.5E-15 2.2E-19 88.6 3.0 58 3-61 16-74 (81)
85 1zfo_A LAsp-1; LIM domain, zin 98.1 1.1E-06 3.8E-11 42.8 1.8 29 62-91 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.1 1.4E-06 4.9E-11 42.4 1.7 29 1-30 2-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 90.4 0.078 2.7E-06 33.2 0.9 102 29-134 7-124 (133)
88 4ap4_A E3 ubiquitin ligase RNF 90.0 0.047 1.6E-06 34.3 -0.4 88 3-100 8-123 (133)
89 2djb_A Polycomb group ring fin 87.8 0.59 2E-05 26.1 3.3 43 91-134 16-61 (72)
90 2ecy_A TNF receptor-associated 87.4 0.57 1.9E-05 25.6 3.0 43 91-134 16-61 (66)
91 2jrp_A Putative cytoplasmic pr 85.9 0.33 1.1E-05 28.5 1.5 14 1-14 1-14 (81)
92 2ysl_A Tripartite motif-contai 84.8 0.79 2.7E-05 25.4 2.8 43 91-134 21-68 (73)
93 1jm7_B BARD1, BRCA1-associated 84.5 0.84 2.9E-05 28.1 3.1 24 110-133 42-65 (117)
94 1t1h_A Gspef-atpub14, armadill 83.6 0.78 2.7E-05 25.9 2.4 44 90-134 8-54 (78)
95 1jjd_A Metallothionein, SMTA; 80.5 1.2 4.2E-05 24.0 2.3 29 92-120 9-38 (55)
96 2egp_A Tripartite motif-contai 80.1 1.7 5.7E-05 24.4 3.0 43 91-134 13-64 (79)
97 3vk6_A E3 ubiquitin-protein li 80.0 0.97 3.3E-05 27.5 1.9 9 65-73 4-12 (101)
98 1jm7_B BARD1, BRCA1-associated 79.5 1.2 3.9E-05 27.5 2.3 44 29-73 22-66 (117)
99 2ecv_A Tripartite motif-contai 78.9 2.1 7.2E-05 24.1 3.2 43 91-134 20-70 (85)
100 1e4u_A Transcriptional repress 78.5 2.1 7.3E-05 24.5 3.1 44 91-134 12-61 (78)
101 2gvi_A Conserved hypothetical 77.8 0.55 1.9E-05 32.2 0.5 31 29-59 172-202 (204)
102 2ecw_A Tripartite motif-contai 77.4 3 0.0001 23.5 3.6 43 91-134 20-70 (85)
103 1g25_A CDK-activating kinase a 77.1 1.5 5.2E-05 23.7 2.1 44 91-134 4-54 (65)
104 2eqg_A Tumor necrosis factor, 76.1 1 3.5E-05 23.0 1.0 18 105-122 22-39 (49)
105 2yur_A Retinoblastoma-binding 75.8 1.9 6.3E-05 24.1 2.3 42 91-133 16-62 (74)
106 1bor_A Transcription factor PM 75.2 1.9 6.4E-05 22.8 2.1 42 30-73 7-48 (56)
107 2y43_A E3 ubiquitin-protein li 75.0 1.4 4.9E-05 26.0 1.7 43 91-134 23-68 (99)
108 2gvi_A Conserved hypothetical 74.5 0.97 3.3E-05 31.0 1.0 31 90-120 172-202 (204)
109 2ecn_A Ring finger protein 141 74.4 1.3 4.3E-05 24.4 1.3 40 92-133 17-58 (70)
110 2ysm_A Myeloid/lymphoid or mix 73.6 3.9 0.00013 24.9 3.5 93 2-120 7-104 (111)
111 1chc_A Equine herpes virus-1 r 73.4 3.2 0.00011 22.5 2.9 38 63-101 6-51 (68)
112 1jm7_A BRCA1, breast cancer ty 72.9 2.3 7.9E-05 25.6 2.3 43 91-134 22-69 (112)
113 3l11_A E3 ubiquitin-protein li 71.4 3.2 0.00011 25.2 2.7 42 91-133 16-60 (115)
114 2ct2_A Tripartite motif protei 71.0 2.8 9.5E-05 23.9 2.3 44 91-134 16-67 (88)
115 2ckl_A Polycomb group ring fin 71.0 2.3 7.7E-05 25.6 2.0 42 91-133 16-60 (108)
116 2d8t_A Dactylidin, ring finger 70.4 3.5 0.00012 22.6 2.6 43 91-134 16-60 (71)
117 3hcs_A TNF receptor-associated 69.9 2.4 8.2E-05 27.7 2.0 42 91-133 19-63 (170)
118 2csy_A Zinc finger protein 183 67.8 2.6 9E-05 23.8 1.7 23 110-132 34-58 (81)
119 3ztg_A E3 ubiquitin-protein li 67.2 2.7 9.2E-05 24.3 1.7 42 91-133 14-60 (92)
120 2ecm_A Ring finger and CHY zin 66.0 3.8 0.00013 21.0 2.0 25 110-134 28-54 (55)
121 1v9x_A Poly (ADP-ribose) polym 65.3 1.6 5.4E-05 27.2 0.4 33 60-92 18-60 (114)
122 4ayc_A E3 ubiquitin-protein li 64.9 4.9 0.00017 25.3 2.7 43 91-134 54-98 (138)
123 2ckl_B Ubiquitin ligase protei 64.5 3.2 0.00011 27.0 1.8 44 90-134 54-101 (165)
124 2vpb_A Hpygo1, pygopus homolog 64.4 2.3 7.7E-05 23.6 0.9 28 63-90 9-39 (65)
125 2ea6_A Ring finger protein 4; 64.2 2.4 8.1E-05 22.9 1.0 44 91-134 16-67 (69)
126 4ic3_A E3 ubiquitin-protein li 64.0 5.1 0.00018 22.3 2.4 41 91-134 25-66 (74)
127 3fl2_A E3 ubiquitin-protein li 63.9 3.5 0.00012 25.4 1.8 43 91-134 53-98 (124)
128 1rmd_A RAG1; V(D)J recombinati 63.7 3.9 0.00013 24.8 2.0 25 109-133 41-68 (116)
129 4gne_A Histone-lysine N-methyl 63.3 8.7 0.0003 23.5 3.5 18 48-72 51-68 (107)
130 2dmj_A Poly (ADP-ribose) polym 63.3 1.6 5.5E-05 26.7 0.2 36 57-92 20-65 (106)
131 2ecg_A Baculoviral IAP repeat- 62.8 6.3 0.00022 21.9 2.7 41 91-134 26-67 (75)
132 3lrq_A E3 ubiquitin-protein li 62.7 2.3 7.9E-05 25.3 0.8 42 91-133 23-68 (100)
133 2ect_A Ring finger protein 126 61.0 8.3 0.00028 21.3 3.0 10 63-72 16-25 (78)
134 3hct_A TNF receptor-associated 60.4 3.5 0.00012 25.3 1.3 26 64-91 20-45 (118)
135 2e5r_A Dystrobrevin alpha; ZZ 60.4 9.7 0.00033 20.8 3.1 37 83-121 6-45 (63)
136 2jne_A Hypothetical protein YF 60.3 5 0.00017 24.2 1.9 61 30-103 33-94 (101)
137 1iym_A EL5; ring-H2 finger, ub 60.2 10 0.00035 19.3 3.1 25 110-134 28-54 (55)
138 2kre_A Ubiquitin conjugation f 59.9 9.2 0.00031 22.8 3.2 46 88-134 27-74 (100)
139 3odc_A Poly [ADP-ribose] polym 59.7 1.8 6.3E-05 26.8 -0.1 33 60-92 17-61 (111)
140 3knv_A TNF receptor-associated 59.4 1.4 4.7E-05 28.3 -0.7 43 90-133 31-76 (141)
141 3od8_A Poly [ADP-ribose] polym 59.3 1.8 6.3E-05 27.0 -0.1 36 57-92 33-78 (116)
142 2kiz_A E3 ubiquitin-protein li 57.5 8.2 0.00028 20.8 2.5 25 110-134 36-62 (69)
143 2fc7_A ZZZ3 protein; structure 56.3 5.5 0.00019 23.1 1.6 24 19-44 13-37 (82)
144 1uw0_A DNA ligase III; DNA rep 55.1 2.6 8.8E-05 26.3 0.0 31 62-92 15-57 (117)
145 1z6u_A NP95-like ring finger p 54.4 5.7 0.00019 25.6 1.6 44 90-134 78-124 (150)
146 2ecj_A Tripartite motif-contai 54.2 15 0.0005 18.8 3.1 30 91-121 16-45 (58)
147 2xeu_A Ring finger protein 4; 53.8 3.8 0.00013 21.6 0.6 44 30-73 4-55 (64)
148 2ct0_A Non-SMC element 1 homol 53.0 5.4 0.00018 22.7 1.2 28 63-91 16-43 (74)
149 1wgm_A Ubiquitin conjugation f 53.0 12 0.00042 22.1 2.9 46 88-134 20-68 (98)
150 4ayb_P DNA-directed RNA polyme 52.2 12 0.0004 19.4 2.3 13 91-103 4-16 (48)
151 2ep4_A Ring finger protein 24; 51.9 10 0.00034 20.7 2.2 25 110-134 37-63 (74)
152 3ng2_A RNF4, snurf, ring finge 50.8 2.9 9.8E-05 22.8 -0.2 45 29-73 10-62 (71)
153 1x4j_A Ring finger protein 38; 49.9 11 0.00036 20.8 2.2 26 110-135 45-72 (75)
154 2kr4_A Ubiquitin conjugation f 49.6 12 0.00041 21.4 2.4 46 88-134 12-59 (85)
155 3nw0_A Non-structural maintena 48.6 7.2 0.00025 27.3 1.5 29 62-91 180-208 (238)
156 2c2l_A CHIP, carboxy terminus 47.7 12 0.00041 26.0 2.6 47 87-134 205-254 (281)
157 2ctu_A Zinc finger protein 483 47.1 8.9 0.00031 20.2 1.5 13 29-41 18-30 (73)
158 2lo3_A SAGA-associated factor 47.0 5.1 0.00017 20.2 0.4 15 3-17 18-32 (44)
159 4av1_A Poly [ADP-ribose] polym 47.0 3.9 0.00013 28.4 -0.1 49 44-93 22-80 (223)
160 2ysj_A Tripartite motif-contai 46.8 7.8 0.00027 20.5 1.2 31 91-122 21-51 (63)
161 2dmi_A Teashirt homolog 3; zin 46.2 3.8 0.00013 24.3 -0.2 14 29-42 19-32 (115)
162 2e6s_A E3 ubiquitin-protein li 45.7 13 0.00046 21.1 2.1 44 48-92 8-57 (77)
163 2l0b_A E3 ubiquitin-protein li 45.6 16 0.00053 21.1 2.5 45 91-135 41-89 (91)
164 3oue_A Cytochrome C family pro 44.5 3.6 0.00012 27.0 -0.5 110 21-131 20-157 (158)
165 2cs2_A Poly [ADP-ribose] polym 42.1 4.8 0.00016 25.7 -0.2 36 57-92 22-69 (134)
166 2xb1_A Pygopus homolog 2, B-ce 40.7 13 0.00045 22.5 1.6 27 64-90 5-34 (105)
167 2vje_B MDM4 protein; proto-onc 38.6 14 0.00047 19.8 1.4 25 110-134 28-55 (63)
168 1znf_A 31ST zinc finger from X 38.5 13 0.00044 14.9 1.1 11 30-40 2-12 (27)
169 3d00_A Tungsten formylmethanof 37.8 7.4 0.00025 26.3 0.2 28 89-122 162-189 (191)
170 2f42_A STIP1 homology and U-bo 37.5 21 0.00073 23.8 2.4 46 88-134 104-152 (179)
171 2d8v_A Zinc finger FYVE domain 37.4 8 0.00027 21.6 0.2 15 46-60 24-38 (67)
172 2yho_A E3 ubiquitin-protein li 37.0 21 0.00071 20.1 2.0 40 92-134 20-60 (79)
173 2ea5_A Cell growth regulator w 36.7 24 0.00083 19.2 2.2 23 110-134 34-57 (68)
174 2kvh_A Zinc finger and BTB dom 36.4 13 0.00045 15.1 0.9 12 30-41 4-15 (27)
175 2cs3_A Protein C14ORF4, MY039 36.2 12 0.00042 21.7 0.9 17 30-46 16-32 (93)
176 1ard_A Yeast transcription fac 35.8 15 0.00051 15.0 1.0 12 30-41 3-14 (29)
177 1weo_A Cellulose synthase, cat 34.8 51 0.0017 19.5 3.4 24 110-133 42-68 (93)
178 1rik_A E6APC1 peptide; E6-bind 33.7 17 0.00058 14.8 1.0 12 30-41 3-14 (29)
179 1paa_A Yeast transcription fac 33.4 18 0.0006 14.9 1.1 12 30-41 3-14 (30)
180 2d8s_A Cellular modulator of i 33.0 32 0.0011 19.5 2.4 18 84-101 42-69 (80)
181 1klr_A Zinc finger Y-chromosom 32.3 20 0.00067 14.6 1.2 12 30-41 3-14 (30)
182 2kvf_A Zinc finger and BTB dom 32.2 17 0.00059 14.7 0.9 12 30-41 4-15 (28)
183 1wim_A KIAA0161 protein; ring 31.9 12 0.00039 21.8 0.3 42 91-132 6-61 (94)
184 2m0e_A Zinc finger and BTB dom 31.9 21 0.00071 14.3 1.2 12 30-41 3-14 (29)
185 2m0f_A Zinc finger and BTB dom 31.4 18 0.00061 14.6 0.9 11 30-40 3-13 (29)
186 2yu4_A E3 SUMO-protein ligase 31.1 19 0.00063 21.0 1.2 42 90-132 7-59 (94)
187 2lvu_A Zinc finger and BTB dom 36.9 10 0.00036 15.2 0.0 12 30-41 3-14 (26)
188 1wen_A Inhibitor of growth fam 30.2 42 0.0014 18.6 2.5 23 7-30 20-47 (71)
189 2a20_A Regulating synaptic mem 30.1 9.3 0.00032 20.8 -0.3 16 47-62 6-21 (62)
190 2dip_A Zinc finger SWIM domain 29.5 16 0.00056 21.8 0.7 36 22-59 26-64 (98)
191 2m0d_A Zinc finger and BTB dom 29.2 20 0.00069 14.5 0.9 11 30-40 4-14 (30)
192 2vnf_A ING 4, P29ING4, inhibit 28.1 19 0.00064 19.3 0.8 23 7-30 14-41 (60)
193 3ql9_A Transcriptional regulat 27.8 32 0.0011 21.7 1.9 52 63-118 9-64 (129)
194 2kvg_A Zinc finger and BTB dom 27.6 17 0.00058 14.8 0.5 11 30-40 4-14 (27)
195 2lvr_A Zinc finger and BTB dom 33.2 13 0.00045 15.3 0.0 12 30-41 4-15 (30)
196 2elx_A Zinc finger protein 406 25.8 24 0.00083 15.1 0.9 13 29-41 7-19 (35)
197 1twf_L ABC10-alpha, DNA-direct 25.8 25 0.00086 19.7 1.0 11 30-40 29-39 (70)
198 2vje_A E3 ubiquitin-protein li 25.5 30 0.001 18.4 1.3 25 110-134 29-56 (64)
199 2das_A Zinc finger MYM-type pr 25.5 44 0.0015 18.2 1.9 26 29-54 20-48 (62)
200 1srk_A Zinc finger protein ZFP 25.4 25 0.00085 15.2 0.9 13 29-41 7-19 (35)
201 2elr_A Zinc finger protein 406 24.8 29 0.00099 15.0 1.0 13 29-41 9-21 (36)
202 1dl6_A Transcription factor II 24.8 26 0.00088 18.7 0.9 14 4-17 32-45 (58)
203 2lvt_A Zinc finger and BTB dom 30.5 16 0.00054 15.0 0.0 12 30-41 3-14 (29)
204 2ecl_A Ring-box protein 2; RNF 24.5 56 0.0019 18.1 2.4 20 82-101 48-75 (81)
205 1weu_A Inhibitor of growth fam 24.4 58 0.002 19.1 2.5 6 51-56 77-82 (91)
206 1rim_A E6APC2 peptide; E6-bind 24.1 30 0.001 15.0 1.0 11 30-40 3-13 (33)
207 2elp_A Zinc finger protein 406 24.0 31 0.001 15.2 1.0 13 29-41 9-21 (37)
208 1p7a_A BF3, BKLF, kruppel-like 23.7 31 0.001 15.1 1.0 13 29-41 11-23 (37)
209 2elq_A Zinc finger protein 406 23.7 29 0.001 15.1 0.9 13 29-41 9-21 (36)
210 3ttc_A HYPF, transcriptional r 22.8 22 0.00075 28.7 0.5 82 3-100 18-99 (657)
211 2elm_A Zinc finger protein 406 22.6 27 0.00094 15.5 0.7 13 29-41 9-21 (37)
212 1wil_A KIAA1045 protein; ring 22.5 29 0.001 20.3 0.9 12 81-92 34-45 (89)
213 1fv5_A First zinc finger of U- 22.3 26 0.00088 16.5 0.5 14 29-42 8-21 (36)
214 2elt_A Zinc finger protein 406 22.2 32 0.0011 14.9 0.9 13 29-41 9-21 (36)
215 1wfh_A Zinc finger (AN1-like) 21.7 46 0.0016 18.3 1.5 11 62-72 15-25 (64)
216 1twf_J DNA-directed RNA polyme 21.7 33 0.0011 19.2 1.0 11 92-102 6-16 (70)
217 4g9i_A Hydrogenase maturation 21.5 27 0.00091 28.8 0.8 81 4-100 108-188 (772)
218 2els_A Zinc finger protein 406 21.5 33 0.0011 14.9 0.8 13 29-41 9-21 (36)
219 2elv_A Zinc finger protein 406 21.0 34 0.0012 14.8 0.9 13 29-41 9-21 (36)
220 1pft_A TFIIB, PFTFIIBN; N-term 20.6 32 0.0011 17.4 0.7 8 30-37 6-13 (50)
221 3vth_A Hydrogenase maturation 20.5 28 0.00095 28.7 0.7 81 4-100 113-193 (761)
222 2yte_A Zinc finger protein 473 20.4 39 0.0013 15.3 1.0 13 29-41 10-22 (42)
223 1njq_A Superman protein; zinc- 20.4 35 0.0012 15.2 0.8 13 29-41 6-18 (39)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=100.00 E-value=1.1e-36 Score=212.25 Aligned_cols=130 Identities=24% Similarity=0.572 Sum_probs=120.8
Q ss_pred ccccccCcccc-ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCc-----------------
Q psy8111 3 SAVKHQDKSFR-EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANS----------------- 64 (135)
Q Consensus 3 ~~C~~C~~~i~-~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~----------------- 64 (135)
..|.+|+++|. ++.|.|+|+.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++
T Consensus 8 ~~C~~C~~~I~~~~~v~a~g~~wH~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~ 86 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQCEGSSFHKS-CFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGE 86 (192)
T ss_dssp EECTTTCCEECSSCCEEETTEEECTT-TCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCC
T ss_pred CcCccCCCeecceeEEEeCCceecCC-CCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCc
Confidence 47999999997 78899999999999 999999999999989999999999999999998876
Q ss_pred -------------------------------hhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCccc
Q psy8111 65 -------------------------------CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIY 113 (135)
Q Consensus 65 -------------------------------C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~ 113 (135)
|++|+++|.+ ...|.++++.||++||+|..|+++|.++.|+..+++||
T Consensus 87 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~y 165 (192)
T 1b8t_A 87 SLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYA-AEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIY 165 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECS-SSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEE
T ss_pred ccccccccccccCCCCcCccccccccCCCCcCCCCCCEecC-cEEEecCCCccchhcCCccccCCCCCCCcccccCCEEe
Confidence 7899999974 45678999999999999999999999888999999999
Q ss_pred CHHhHhhhcCCCcccCCCCCC
Q psy8111 114 CGNCYDAQFASRCDGCSEIFK 134 (135)
Q Consensus 114 C~~c~~~~~~~~C~~C~~~I~ 134 (135)
|+.||.++|+++|.+|+++|.
T Consensus 166 C~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 166 CKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp EHHHHHHHTCCCCCCCCCCCC
T ss_pred CHHHHHHhcCCcCCCCCCccc
Confidence 999999999999999999864
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=194.35 Aligned_cols=121 Identities=26% Similarity=0.691 Sum_probs=113.2
Q ss_pred cccccccCcccc-ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccccCcccce
Q psy8111 2 ESAVKHQDKSFR-EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLS 80 (135)
Q Consensus 2 ~~~C~~C~~~i~-~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~ 80 (135)
...|.+|+++|. +++|.|+|+.||++ ||+|+.|+++|++..|+.++|++||+.||.++++++|++|+++|.+++.+|+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 81 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLK-HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVT 81 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGG-GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEE
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCC-CCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEE
Confidence 467999999999 57899999999999 9999999999999899999999999999999999999999999986678899
Q ss_pred eCCcccc--ccccccccccccCCCCCeeeeCCcccCHHhHhhhcC
Q psy8111 81 YKDKHWH--EACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123 (135)
Q Consensus 81 ~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~ 123 (135)
++++.|| ++||+|..|+++|.++.|+..+++|||..++.++|.
T Consensus 82 a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f~ 126 (126)
T 2xqn_T 82 YNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS 126 (126)
T ss_dssp ETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSCC
T ss_pred CCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhcC
Confidence 9999999 999999999999998889999999999988887763
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=100.00 E-value=5.7e-36 Score=197.00 Aligned_cols=122 Identities=19% Similarity=0.354 Sum_probs=112.5
Q ss_pred cccccccCcccccc-ceeeCCCcccCCCCeeccccCCccC--CCceEeECCeeeccCchhhhcCC--chhhcCCccccCc
Q psy8111 2 ESAVKHQDKSFRED-YNKLGGKDRGSGQHFCCWQCDESLT--GQRYVLRDDHPYCIKCYESVFAN--SCEECSKIIGIDS 76 (135)
Q Consensus 2 ~~~C~~C~~~i~~~-~i~a~~~~~H~~~cf~C~~C~~~l~--~~~~~~~~~~~~C~~c~~~~~~~--~C~~C~~~I~~~~ 76 (135)
...|.+|+++|.++ +|.|+|+.||++ ||+|+.|+.+|+ +..|+.++|++||++||.+++++ +|.+|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~-CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHED-CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETT-TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHH-HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc
Confidence 36799999999987 589999999999 999999999996 35899999999999999999999 9999999998666
Q ss_pred ccceeCCccccccccccccccccCC-CCCeeeeCCcccCHHhHhhhcCC
Q psy8111 77 KDLSYKDKHWHEACFSCSKCRQSLV-DKQFGSKSEKIYCGNCYDAQFAS 124 (135)
Q Consensus 77 ~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~c~~~~~~~ 124 (135)
.+|.++++.||++||+|..|+++|. +..|+..++++||..||.++|++
T Consensus 81 ~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 81 MTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp EEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred eeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 7899999999999999999999995 66799999999999999998764
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=100.00 E-value=2.3e-34 Score=199.92 Aligned_cols=128 Identities=17% Similarity=0.330 Sum_probs=112.1
Q ss_pred ccccccCcccccc-ceeeCCCcccCCCCeeccccCCccCC--CceEeECCeeeccCchhhhcCC--chhhcCCccccCcc
Q psy8111 3 SAVKHQDKSFRED-YNKLGGKDRGSGQHFCCWQCDESLTG--QRYVLRDDHPYCIKCYESVFAN--SCEECSKIIGIDSK 77 (135)
Q Consensus 3 ~~C~~C~~~i~~~-~i~a~~~~~H~~~cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~--~C~~C~~~I~~~~~ 77 (135)
..|.+|+++|.++ +|.|+++.||++ ||+|+.|+.+|.+ ..|+.++|++||+.||.+++++ +|.+|+++|.+.+.
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~-CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~ 84 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHSR-CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASEL 84 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECGG-GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSE
T ss_pred CcCccCCCEeCCceeEEecCcEeccc-CcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcE
Confidence 5799999999987 589999999999 9999999999985 6899999999999999999998 79999999986677
Q ss_pred cceeCCccccccccccccccccCC-CCCeeeeCCcccCHHhHhhhcCCCcccCCC
Q psy8111 78 DLSYKDKHWHEACFSCSKCRQSLV-DKQFGSKSEKIYCGNCYDAQFASRCDGCSE 131 (135)
Q Consensus 78 ~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~ 131 (135)
+|.+.++.||++||+|..|+++|. +..|+..++++||..||.++++++|...+.
T Consensus 85 ~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 85 VMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp EEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred EEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 889999999999999999999996 567999999999999999999999987654
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.97 E-value=1.7e-32 Score=187.56 Aligned_cols=122 Identities=19% Similarity=0.357 Sum_probs=108.9
Q ss_pred ccccccCcccccc-ceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccccCccccee
Q psy8111 3 SAVKHQDKSFRED-YNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSY 81 (135)
Q Consensus 3 ~~C~~C~~~i~~~-~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~ 81 (135)
..|.+|+++|.++ +|.|+|+.||++ ||+|+.|+++|++.. +.++|++||+.||.++++++|.+|+++|.+.+.++.+
T Consensus 7 ~~C~~C~~~I~~~~~~~a~~~~wH~~-CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a 84 (169)
T 2rgt_A 7 PMCAGCDQHILDRFILKALDRHWHSK-CLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRA 84 (169)
T ss_dssp CBBSSSSSBCCSSSCEECSSCEECTT-TSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEE
T ss_pred CccccCCCccCCcEEEEECCcEEccc-cCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCCcEEEEc
Confidence 5799999999987 578999999999 999999999999875 5899999999999999999999999999866667889
Q ss_pred CCccccccccccccccccCC-CCCeee-eCCcccCHHhHhhhcCCCc
Q psy8111 82 KDKHWHEACFSCSKCRQSLV-DKQFGS-KSEKIYCGNCYDAQFASRC 126 (135)
Q Consensus 82 ~~~~~H~~Cf~C~~C~~~l~-~~~~~~-~~~~~~C~~c~~~~~~~~C 126 (135)
+++.||++||+|..|+++|. +..|+. .++++||+.||.++++..+
T Consensus 85 ~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~ 131 (169)
T 2rgt_A 85 QDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGS 131 (169)
T ss_dssp TTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC-
T ss_pred CCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccC
Confidence 99999999999999999997 445654 5899999999998876543
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.97 E-value=5.2e-32 Score=187.14 Aligned_cols=118 Identities=19% Similarity=0.371 Sum_probs=106.2
Q ss_pred ccccccCcccccc-ceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccccCccccee
Q psy8111 3 SAVKHQDKSFRED-YNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSY 81 (135)
Q Consensus 3 ~~C~~C~~~i~~~-~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~ 81 (135)
..|.+|+++|.++ ++.|+|+.||++ ||+|+.|+++|.+.. +.++|++||+.||.++++++|.+|+++|.+.+.++.+
T Consensus 61 ~~C~~C~~~I~~~~~~~a~~~~wH~~-CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a 138 (182)
T 2jtn_A 61 PMCAGCDQHILDRFILKALDRHWHSK-CLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRA 138 (182)
T ss_dssp CBCBTSSSBCCCSEEEEETTEEECSS-TTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEE
T ss_pred CcCccCCCCccCceeEEecCCeEccc-cCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCCceEEec
Confidence 5799999999987 578999999999 999999999999876 5899999999999999999999999999866667889
Q ss_pred CCccccccccccccccccCCC-CCeee-eCCcccCHHhHhhhc
Q psy8111 82 KDKHWHEACFSCSKCRQSLVD-KQFGS-KSEKIYCGNCYDAQF 122 (135)
Q Consensus 82 ~~~~~H~~Cf~C~~C~~~l~~-~~~~~-~~~~~~C~~c~~~~~ 122 (135)
.++.||++||+|..|+++|.. ..|+. .++++||..||.++.
T Consensus 139 ~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 139 QDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp TTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred CCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 999999999999999999984 45654 589999999998753
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.96 E-value=3.6e-30 Score=162.20 Aligned_cols=94 Identities=23% Similarity=0.455 Sum_probs=89.0
Q ss_pred ccccccCcccc--ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccccCcccce
Q psy8111 3 SAVKHQDKSFR--EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLS 80 (135)
Q Consensus 3 ~~C~~C~~~i~--~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~ 80 (135)
..|.+|+++|. +++|.|+|+.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++|.+|+++|.+++.+|+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 84 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHYKNRFWHDT-CFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVE 84 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEETTEEEETT-TCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEEE
T ss_pred CcCcccCCcccCCceEEEECccChhhc-CCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEEE
Confidence 57999999997 68899999999999 9999999999998889999999999999999999999999999986678899
Q ss_pred eCCcccccccccccccc
Q psy8111 81 YKDKHWHEACFSCSKCR 97 (135)
Q Consensus 81 ~~~~~~H~~Cf~C~~C~ 97 (135)
++++.||++||+|..|+
T Consensus 85 a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 85 YKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp SSSCEEETTTCCCTTCC
T ss_pred eCCcchHHhCCCCCCCC
Confidence 99999999999999985
No 8
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=4e-26 Score=138.61 Aligned_cols=81 Identities=38% Similarity=0.938 Sum_probs=77.1
Q ss_pred CCeeeccCchhhhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcc
Q psy8111 48 DDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCD 127 (135)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 127 (135)
+|++||++||.++++++|++|+++|.+++.+|.++++.||++||+|+.|+++|.++.|+..+++|||+.||.++|+++|+
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 68999999999999999999999998778889999999999999999999999988999999999999999999999997
Q ss_pred c
Q psy8111 128 G 128 (135)
Q Consensus 128 ~ 128 (135)
+
T Consensus 81 ~ 81 (82)
T 2ehe_A 81 S 81 (82)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.91 E-value=5.6e-26 Score=147.66 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=92.6
Q ss_pred cccccccCcccccc-ceeeCCCcccCCCCeeccccCCccC--CCceEeECCeeeccCchhhhcCC--chhhcCCccccCc
Q psy8111 2 ESAVKHQDKSFRED-YNKLGGKDRGSGQHFCCWQCDESLT--GQRYVLRDDHPYCIKCYESVFAN--SCEECSKIIGIDS 76 (135)
Q Consensus 2 ~~~C~~C~~~i~~~-~i~a~~~~~H~~~cf~C~~C~~~l~--~~~~~~~~~~~~C~~c~~~~~~~--~C~~C~~~I~~~~ 76 (135)
...|.+|+++|.+. +|.|+++.||++ ||+|+.|+.+|. +..|+.++|++||+.||.+++++ +|++|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~-CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~-- 81 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSR-CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG-- 81 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHH-HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC--
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhh-CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc--
Confidence 35799999999987 499999999999 999999999997 35799999999999999999999 99999999963
Q ss_pred ccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCC
Q psy8111 77 KDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFAS 124 (135)
Q Consensus 77 ~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~ 124 (135)
..+.+.++ .+|.++.|+.++++|||..|+.+++..
T Consensus 82 ~~~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~~~~~ 116 (122)
T 1m3v_A 82 GDVMVVGE-------------PTLMGGEFGDEDERLITRLENTQFDAA 116 (122)
T ss_dssp EESSSSSS-------------SSCCSCTTCCTTCCCCEECTTTTTTCC
T ss_pred hheEEcCC-------------cCCCCCccEecCCEeEccCcchhchhh
Confidence 33445552 367788999999999999999887653
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.90 E-value=1e-24 Score=131.78 Aligned_cols=79 Identities=23% Similarity=0.449 Sum_probs=74.4
Q ss_pred CCeeeccCchhhhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcc
Q psy8111 48 DDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCD 127 (135)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 127 (135)
+|++||++||.++++++|++|+++|. +..|.++++.||++||+|+.|+++|.++.|+..+++|||+.||.++|+++|+
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~--~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~ 78 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVL--ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPS 78 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCC--SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCC
T ss_pred CCCccchhHHhhhcCCccccCCCeec--ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCC
Confidence 47899999999999999999999996 4678999999999999999999999988899999999999999999999997
Q ss_pred c
Q psy8111 128 G 128 (135)
Q Consensus 128 ~ 128 (135)
+
T Consensus 79 ~ 79 (80)
T 1x3h_A 79 S 79 (80)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.90 E-value=1.2e-24 Score=131.51 Aligned_cols=79 Identities=34% Similarity=0.798 Sum_probs=74.3
Q ss_pred CCeeeccCchhhhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcc
Q psy8111 48 DDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCD 127 (135)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 127 (135)
+|++||++||.++++++|++|+++|. +..|.++++.||++||+|..|+++|.++.|+..+++|||+.||.++|+++|+
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~--~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLT--QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCC--SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred CCcEEcHHHHccccCCcCCCCCCEec--CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 58999999999999999999999996 3478999999999999999999999988899999999999999999999997
Q ss_pred c
Q psy8111 128 G 128 (135)
Q Consensus 128 ~ 128 (135)
+
T Consensus 79 s 79 (80)
T 2cuq_A 79 S 79 (80)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.90 E-value=2.2e-24 Score=130.87 Aligned_cols=81 Identities=31% Similarity=0.648 Sum_probs=76.0
Q ss_pred CCeeeccCchhhhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcc
Q psy8111 48 DDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCD 127 (135)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 127 (135)
++.+||++||.++++++|++|+++|.+.+.+|.++++.||++||+|..|+++|.++.|+..+++|||+.||.++|++++.
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 47899999999999999999999998667789999999999999999999999988999999999999999999999986
Q ss_pred c
Q psy8111 128 G 128 (135)
Q Consensus 128 ~ 128 (135)
.
T Consensus 81 ~ 81 (82)
T 1x63_A 81 S 81 (82)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.90 E-value=3.7e-24 Score=129.63 Aligned_cols=78 Identities=26% Similarity=0.491 Sum_probs=72.3
Q ss_pred CCeeeccCchhhhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeee-CCcccCHHhHhhhcCCCc
Q psy8111 48 DDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSK-SEKIYCGNCYDAQFASRC 126 (135)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~C~~c~~~~~~~~C 126 (135)
+|++||++||. +++++|++|+++|. +++|.++++.||++||+|+.|+++|.+..|+.. +++|||+.||.++|+++|
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C 78 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPIL--DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCC--SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSS
T ss_pred cCCEECHHHhh-cCCCccccCCCeec--ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcC
Confidence 68999999999 78999999999996 568999999999999999999999998888776 789999999999999999
Q ss_pred cc
Q psy8111 127 DG 128 (135)
Q Consensus 127 ~~ 128 (135)
++
T Consensus 79 ~~ 80 (81)
T 2dlo_A 79 SS 80 (81)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 14
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.88 E-value=1.5e-23 Score=134.65 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=86.4
Q ss_pred cccccccCcccccc-ceeeCCCcccCCCCeeccccCCccCC--CceEeECCeeeccCchhhhcCCchhhcCCccccCccc
Q psy8111 2 ESAVKHQDKSFRED-YNKLGGKDRGSGQHFCCWQCDESLTG--QRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKD 78 (135)
Q Consensus 2 ~~~C~~C~~~i~~~-~i~a~~~~~H~~~cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~ 78 (135)
...|.+|+++|.++ +|.|+++.||++ ||+|+.|+++|.+ ..|+.++|++||+.||.++|+++|..|.. +.+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~-CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~-----~~~ 76 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHED-CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG-----GDV 76 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTT-TCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS-----CSC
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHh-cCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC-----Cce
Confidence 35799999999987 799999999999 9999999999985 57999999999999999999999988863 223
Q ss_pred ceeCCcccccccccccccccc-CCCCCeeeeCCcccCHHhHhhhcCC
Q psy8111 79 LSYKDKHWHEACFSCSKCRQS-LVDKQFGSKSEKIYCGNCYDAQFAS 124 (135)
Q Consensus 79 ~~~~~~~~H~~Cf~C~~C~~~-l~~~~~~~~~~~~~C~~c~~~~~~~ 124 (135)
|. |+++ |.++.|+..+++|||..|+.++.++
T Consensus 77 ~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~~~~~ 108 (114)
T 1j2o_A 77 MV---------------VGEPTLMGGEFGDEDERLITRLENTQFDAA 108 (114)
T ss_dssp CC---------------SSCSSTTSSBCCCSSSCCCEEEECTTCCCT
T ss_pred eE---------------cCCccCCCCeeEEcCCEeecchhhhccccc
Confidence 32 3344 5677899999999999999877653
No 15
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=9.3e-23 Score=122.22 Aligned_cols=74 Identities=30% Similarity=0.733 Sum_probs=68.6
Q ss_pred CCeeeccCchhhhcCCchhhcCCcccc---CcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhh
Q psy8111 48 DDHPYCIKCYESVFANSCEECSKIIGI---DSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQ 121 (135)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~I~~---~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 121 (135)
++++||++||.++++++|++|+++|.+ ++..|.++++.||++||+|+.|+++|.++.|+..+++|||+.||.++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 478999999999999999999999985 45889999999999999999999999988899999999999999753
No 16
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.87 E-value=1.6e-22 Score=122.37 Aligned_cols=79 Identities=22% Similarity=0.552 Sum_probs=71.8
Q ss_pred CCeeeccCchhhhcCCchhhcCCccccCcccceeCCccccccccccccccccCCC-CCee-eeCCcccCHHhHhhhcCCC
Q psy8111 48 DDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVD-KQFG-SKSEKIYCGNCYDAQFASR 125 (135)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~-~~~~~~~C~~c~~~~~~~~ 125 (135)
++.+||++||.++++++|++|+++|. +..|.++++.||++||+|..|+++|.+ ..|+ ..+++|||+.||.++|++.
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~ 78 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGP 78 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCC--SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTT
T ss_pred CCCccchhHHhhhcCCcCccCCCCcC--ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCC
Confidence 36899999999999999999999996 678999999999999999999999974 5677 4799999999999999998
Q ss_pred ccc
Q psy8111 126 CDG 128 (135)
Q Consensus 126 C~~ 128 (135)
+++
T Consensus 79 ~sg 81 (81)
T 1x6a_A 79 SSG 81 (81)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 17
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.86 E-value=2.2e-22 Score=126.39 Aligned_cols=76 Identities=38% Similarity=0.905 Sum_probs=71.0
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcccCCCCCCC
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCSEIFKA 135 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~ 135 (135)
.++++|++|+++|.+++.+|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|++|+++|.|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVA 78 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCS
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcccc
Confidence 4578999999999766788999999999999999999999988889999999999999999999999999999974
No 18
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=127.00 Aligned_cols=74 Identities=23% Similarity=0.574 Sum_probs=69.1
Q ss_pred cCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcccCCCCCCC
Q psy8111 61 FANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCSEIFKA 135 (135)
Q Consensus 61 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~ 135 (135)
++++|++|+++|. ++.++.++|+.||++||+|+.|+++|.++.|+..+|+|||+.||.++|+++|++|+++|.+
T Consensus 2 ~~~~C~~C~~~I~-~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 2 EKPRCAGCDELIF-SNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp CCCBBTTTSSBCC-SSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred cCCCCccCCCEeC-CceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 5689999999997 3567899999999999999999999998899999999999999999999999999999974
No 19
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=2.7e-21 Score=115.64 Aligned_cols=72 Identities=33% Similarity=0.677 Sum_probs=66.5
Q ss_pred hhcCCchhhcCCcccc--CcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcccCC
Q psy8111 59 SVFANSCEECSKIIGI--DSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCS 130 (135)
Q Consensus 59 ~~~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~ 130 (135)
++++++|++|+++|.+ ++.+|.++++.||++||+|+.|+++|.+..|+..+++|||+.||.++|+++|+.++
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 3578999999999974 45789999999999999999999999988899999999999999999999999886
No 20
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.82 E-value=6.7e-21 Score=112.62 Aligned_cols=70 Identities=34% Similarity=0.745 Sum_probs=64.7
Q ss_pred hhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCccc
Q psy8111 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDG 128 (135)
Q Consensus 59 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 128 (135)
++++++|.+|+++|.+.+.+|.++++.||++||+|..|+++|.++.|+..+++|||+.||.++|+++|++
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 3567899999999986568899999999999999999999999888999999999999999999999974
No 21
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.82 E-value=6.1e-21 Score=112.81 Aligned_cols=69 Identities=35% Similarity=0.783 Sum_probs=64.4
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCccc
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDG 128 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 128 (135)
+++++|++|+++|.+.+.+|.++++.||++||+|..|+++|.+..|+..+++|||+.||.++|+++|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 578999999999986567899999999999999999999999889999999999999999999999974
No 22
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.82 E-value=7.1e-21 Score=113.74 Aligned_cols=71 Identities=27% Similarity=0.653 Sum_probs=65.2
Q ss_pred CchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCH-HhHhhhcCCCcccCCCCCC
Q psy8111 63 NSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCG-NCYDAQFASRCDGCSEIFK 134 (135)
Q Consensus 63 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~-~c~~~~~~~~C~~C~~~I~ 134 (135)
|+|++|+++|.+ +..|.++++.||++||+|..|+++|.++.|+..+++|||+ .||.++|+++|++|++.+.
T Consensus 1 p~C~~C~~~I~~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYF-AERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCG-GGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEEC-ceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 689999999974 5568899999999999999999999988999999999999 6999999999999998764
No 23
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.82 E-value=4.2e-21 Score=124.56 Aligned_cols=75 Identities=28% Similarity=0.454 Sum_probs=67.7
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCC--CCeeeeCCcccCHHhHhhhcCC--CcccCCCCCCC
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVD--KQFGSKSEKIYCGNCYDAQFAS--RCDGCSEIFKA 135 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~--~C~~C~~~I~~ 135 (135)
+++++|++|+++|. +..+|.++++.||++||+|..|+++|.+ ..|+.++++|||..||.++|++ +|++|+++|.+
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 3 LSWKRCAGCGGKIA-DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp SCCCCBSSSSSCCC-SSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCCCCcccCCEeC-CcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 35689999999997 3446889999999999999999999973 5799999999999999999999 99999999974
No 24
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=3.3e-20 Score=110.83 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=65.5
Q ss_pred ccccccCcccc-ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeecc-CchhhhcCCchhhcCCccc
Q psy8111 3 SAVKHQDKSFR-EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCI-KCYESVFANSCEECSKIIG 73 (135)
Q Consensus 3 ~~C~~C~~~i~-~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~-~c~~~~~~~~C~~C~~~I~ 73 (135)
..|.+|+++|. ++.|.|+|+.||++ ||+|..|+++|.+..|+.++|++||+ .||.++++++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRP-CLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETT-TCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCC-CCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 36999999998 88899999999999 99999999999998899999999999 6999999999999998763
No 25
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.80 E-value=1.4e-20 Score=113.77 Aligned_cols=72 Identities=21% Similarity=0.626 Sum_probs=56.3
Q ss_pred cCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcccCCCCC
Q psy8111 61 FANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCSEIF 133 (135)
Q Consensus 61 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I 133 (135)
.+++|.+|+++|.+ +..+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.+|++.+
T Consensus 6 ~~~~C~~C~~~I~~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 6 GGNKCGACGRTVYH-AEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp --CBCSSSCCBCSS-TTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCcCcCcCccccC-ceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 46899999999974 4578999999999999999999999988899999999999999999999999998765
No 26
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=3e-20 Score=111.14 Aligned_cols=68 Identities=24% Similarity=0.500 Sum_probs=61.7
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcc
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCD 127 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 127 (135)
.++++|++|+++|.+.+.++.++|+.||++||+|..|+++|.++.|+..+|++||+.||.++|+++|+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 45689999999998667788999999999999999999999988899999999999999999999996
No 27
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=5.4e-20 Score=108.16 Aligned_cols=67 Identities=30% Similarity=0.801 Sum_probs=61.6
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCccc
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDG 128 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 128 (135)
.++++|.+|+++|. +..|.++++.||++||+|..|+++|.++.|+..+++|||+.||.++|+++|++
T Consensus 3 ~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT--TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCBCSSSCCBCC--SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCcccCCeec--cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 45789999999996 45689999999999999999999999888999999999999999999999974
No 28
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=4.3e-20 Score=108.31 Aligned_cols=67 Identities=30% Similarity=0.819 Sum_probs=61.8
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCccc
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDG 128 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 128 (135)
.++++|.+|+++|. +..|.++++.||++||+|..|+++|.+..|+..+++|||..||.++|+++|++
T Consensus 3 ~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAIT--SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCC--TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeC--cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 45789999999996 45789999999999999999999999888999999999999999999999975
No 29
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.79 E-value=9.2e-20 Score=125.64 Aligned_cols=86 Identities=28% Similarity=0.596 Sum_probs=75.0
Q ss_pred CCeeeccCchh---hhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCC
Q psy8111 48 DDHPYCIKCYE---SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFAS 124 (135)
Q Consensus 48 ~~~~~C~~c~~---~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~ 124 (135)
++..+|...+. ....++|.+|+++|. +..++.++++.||++||+|..|+++|.+..| .++|+|||+.||.++|++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~-~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~ 120 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHIL-DRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGT 120 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCC-CSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSC
T ss_pred ccccccccccccCCCCCCCcCccCCCCcc-CceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCcccccccc
Confidence 45678887765 445689999999997 4556889999999999999999999988765 789999999999999999
Q ss_pred CcccCCCCCCC
Q psy8111 125 RCDGCSEIFKA 135 (135)
Q Consensus 125 ~C~~C~~~I~~ 135 (135)
+|.+|+++|.+
T Consensus 121 kC~~C~~~I~~ 131 (182)
T 2jtn_A 121 KCAACQLGIPP 131 (182)
T ss_dssp CCTTTCCCCCS
T ss_pred ccccCCCccCC
Confidence 99999999964
No 30
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=8e-20 Score=112.52 Aligned_cols=73 Identities=25% Similarity=0.537 Sum_probs=65.9
Q ss_pred cCchhhhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCccc
Q psy8111 54 IKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDG 128 (135)
Q Consensus 54 ~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 128 (135)
...+...++++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+..+++|||+.||.++|+++|+.
T Consensus 17 ~~~~~~~~~~~C~~C~~~I~--~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 17 EHIPAGKRTPMCAHCNQVIR--GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp EEECTTTCCCBBSSSCCBCC--SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred ccCCCCCCCCCCccCCCEec--ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 33356678899999999994 67889999999999999999999999888999999999999999999999974
No 31
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=8.4e-20 Score=110.30 Aligned_cols=74 Identities=20% Similarity=0.406 Sum_probs=64.9
Q ss_pred CeeeccCchhhhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCC-cccCHHhHhhhcCC
Q psy8111 49 DHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSE-KIYCGNCYDAQFAS 124 (135)
Q Consensus 49 ~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~c~~~~~~~ 124 (135)
+.+||++||.++++++|++|+++|. +++|.++++.||++||+|..|+++|.++.++..++ .+||..||.+++..
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~--~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIE--GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCC--SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSC
T ss_pred CCCcchHHHHhHhCCcCccccCEec--cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCC
Confidence 5789999999999999999999996 56899999999999999999999998766666555 57999999887653
No 32
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.1e-19 Score=108.62 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=62.9
Q ss_pred cccccccCccccc----cceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcC
Q psy8111 2 ESAVKHQDKSFRE----DYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECS 69 (135)
Q Consensus 2 ~~~C~~C~~~i~~----~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~ 69 (135)
...|.+|+++|.+ ++|.|+++.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++|+.+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~-CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSE-CFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGG-GCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcc-cCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 3579999999997 8899999999999 99999999999988999999999999999999999998764
No 33
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.6e-19 Score=106.66 Aligned_cols=67 Identities=28% Similarity=0.708 Sum_probs=61.5
Q ss_pred hcCCchhhcCCcccc--CcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCc
Q psy8111 60 VFANSCEECSKIIGI--DSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRC 126 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C 126 (135)
.++++|.+|+++|.. ++.+|.++++.||++||+|..|+++|.+..|+..+++|||..||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 357899999999975 4578999999999999999999999998899999999999999999999986
No 34
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.6e-19 Score=107.85 Aligned_cols=69 Identities=28% Similarity=0.677 Sum_probs=62.5
Q ss_pred hhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCH-HhHhhhcCCCccc
Q psy8111 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCG-NCYDAQFASRCDG 128 (135)
Q Consensus 59 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~-~c~~~~~~~~C~~ 128 (135)
..++++|++|+++|.+ +..|.++++.||++||+|..|+++|.++.|+..+++|||. .||.++|+++|++
T Consensus 6 ~~~~~~C~~C~~~I~~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYF-AEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCBCTTTCCBCCT-TTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCCcCCCCEeEC-CeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 3467899999999974 4568899999999999999999999988899999999999 7999999999974
No 35
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=8.9e-20 Score=106.97 Aligned_cols=64 Identities=22% Similarity=0.511 Sum_probs=60.8
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhh
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEE 67 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (135)
..|.+|+++|.+++|.++++.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++|++
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHAD-CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTT-TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCCcccCCEeCcceEEECccccccC-cCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 5799999999999999999999999 999999999999889999999999999999999999864
No 36
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.77 E-value=1.4e-19 Score=109.36 Aligned_cols=69 Identities=14% Similarity=0.317 Sum_probs=56.3
Q ss_pred ccccccCcccc-ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCcc
Q psy8111 3 SAVKHQDKSFR-EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKII 72 (135)
Q Consensus 3 ~~C~~C~~~i~-~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I 72 (135)
..|.+|+++|. ++.|.++++.||++ ||+|+.|+++|.+..|+.+++++||+.||.++++++|.+|++..
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRC-CFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESS-SEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CcCcCcCccccCceeEEeCCcccccc-cCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 57999999996 78899999999999 99999999999988899999999999999999999999998865
No 37
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.77 E-value=2e-19 Score=104.61 Aligned_cols=64 Identities=22% Similarity=0.566 Sum_probs=59.6
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCC
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASR 125 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~ 125 (135)
+++++|++|+++|. +..|.++++.||++||+|..|+++|.++.|+..++++||+.||.++|++|
T Consensus 3 ~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIE--GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECC--SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEec--ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 46789999999996 56789999999999999999999999888999999999999999999986
No 38
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.77 E-value=1.9e-19 Score=117.80 Aligned_cols=73 Identities=30% Similarity=0.615 Sum_probs=66.1
Q ss_pred CCchhhcCCccccCcccceeCCccccccccccccccccCCC--CCeeeeCCcccCHHhHhhhcCC--CcccCCCCCCC
Q psy8111 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVD--KQFGSKSEKIYCGNCYDAQFAS--RCDGCSEIFKA 135 (135)
Q Consensus 62 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~--~C~~C~~~I~~ 135 (135)
.++|++|+++|. +..++.++++.||++||+|+.|+++|.. ..|+..+|+|||+.||.++|++ +|++|+++|.+
T Consensus 2 ~~~C~~C~~~I~-~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 2 LLTCGGCQQNIG-DRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CCBBTTTCCBCC-SSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cccCcCCCCEeC-CcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 368999999997 4446899999999999999999999963 5799999999999999999999 99999999964
No 39
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=1.4e-19 Score=106.38 Aligned_cols=64 Identities=25% Similarity=0.535 Sum_probs=60.7
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhh
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEE 67 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (135)
..|.+|+++|.++.|.++++.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++|++
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKE-CFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETT-TSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCcccCCeeccceEEECccccCCC-CCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 5799999999999999999999999 999999999999889999999999999999999999863
No 40
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=4.2e-19 Score=107.08 Aligned_cols=65 Identities=34% Similarity=0.680 Sum_probs=59.4
Q ss_pred CCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCccc
Q psy8111 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDG 128 (135)
Q Consensus 62 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 128 (135)
.++|.+|+++|.+ +..|.++++.||++||+|..|+++|.+ .|+.++++|||+.||.++|+++|++
T Consensus 15 ~~~C~~C~~~I~~-~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKH-GQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSS-SCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCcCcCCeeCC-CeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 4789999999973 567899999999999999999999986 5899999999999999999999974
No 41
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=5.5e-19 Score=105.47 Aligned_cols=65 Identities=25% Similarity=0.416 Sum_probs=60.6
Q ss_pred cccccccCcccc-ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeecc-CchhhhcCCchhh
Q psy8111 2 ESAVKHQDKSFR-EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCI-KCYESVFANSCEE 67 (135)
Q Consensus 2 ~~~C~~C~~~i~-~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~-~c~~~~~~~~C~~ 67 (135)
...|.+|+++|. ++.|.|+++.||++ ||+|..|+++|.+..|+.++|++||+ .||.++++++|.+
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKF-CLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETT-TCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCC-CCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 357999999999 78899999999999 99999999999988899999999999 7999999999863
No 42
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=3.1e-19 Score=109.85 Aligned_cols=63 Identities=24% Similarity=0.457 Sum_probs=60.3
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|.+++|.|+++.||++ ||+|..|+++|.+..|+.++|++||+.||.++++++|+
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~-CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPE-EFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTT-TCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred CCCccCCCEecceEEEECCcccccc-CCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCC
Confidence 4699999999999999999999999 99999999999988899999999999999999999986
No 43
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=4.5e-19 Score=104.70 Aligned_cols=64 Identities=23% Similarity=0.501 Sum_probs=60.2
Q ss_pred cccccccCcccc--ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 2 ESAVKHQDKSFR--EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 2 ~~~C~~C~~~i~--~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
...|.+|+++|. +++|.|+++.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEH-CFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETT-TCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcc-cCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 357999999999 67899999999999 99999999999998999999999999999999999986
No 44
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.75 E-value=4.4e-19 Score=103.12 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=58.2
Q ss_pred cccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCc
Q psy8111 2 ESAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANS 64 (135)
Q Consensus 2 ~~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~ 64 (135)
...|.+|+++|.+++|.|+|+.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVE-HFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETT-TCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCcccCCEecceEEEECccccccC-cCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 35799999999999999999999999 999999999999989999999999999999998764
No 45
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=8.2e-19 Score=105.80 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=58.7
Q ss_pred ccccccCcccc-ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhh
Q psy8111 3 SAVKHQDKSFR-EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEE 67 (135)
Q Consensus 3 ~~C~~C~~~i~-~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (135)
..|.+|+++|. +++|.|+++.||++ ||+|..|+++|.+ .|+.++|++||+.||.++|+++|++
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~wH~~-CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDKQWHVS-CFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTEEECTT-TCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCcCcCCeeCCCeEEEECCcccccc-cCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 46999999997 78899999999999 9999999999996 5999999999999999999999864
No 46
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.75 E-value=7.3e-19 Score=119.81 Aligned_cols=72 Identities=31% Similarity=0.748 Sum_probs=65.1
Q ss_pred CCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcccCCCCCCC
Q psy8111 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCSEIFKA 135 (135)
Q Consensus 62 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~ 135 (135)
.++|.+|+++|. +..++.++|+.||++||+|..|+++|.+..| .++|++||+.||.++|+++|++|+++|.+
T Consensus 6 ~~~C~~C~~~I~-~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 6 IPMCAGCDQHIL-DRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPP 77 (169)
T ss_dssp -CBBSSSSSBCC-SSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCT
T ss_pred CCccccCCCccC-CcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCC
Confidence 579999999997 4556889999999999999999999988764 78999999999999999999999999964
No 47
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=5.9e-19 Score=106.23 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=60.8
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhh
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEE 67 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (135)
..|.+|+++|.+++|.|+++.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++|++
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPE-CFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTT-TCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CccccCCCeecceeEEECCCeEecC-cCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 5799999999999999999999999 999999999999888999999999999999999999863
No 48
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=7.4e-19 Score=103.74 Aligned_cols=63 Identities=19% Similarity=0.507 Sum_probs=59.4
Q ss_pred ccccccCcccc--ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFR--EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~--~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|. +.+|.|+|+.||++ ||+|..|+++|.+..|+.++|++||+.||.++++++|+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHET-CFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETT-TTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred CCCccCCCcccCCceEEEECcCeeccc-CCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 57999999999 46899999999999 99999999999998999999999999999999999986
No 49
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.74 E-value=6e-19 Score=114.51 Aligned_cols=78 Identities=21% Similarity=0.377 Sum_probs=69.5
Q ss_pred hhhhcCC--chhhcCCccccCcccceeCCccccccccccccccccCC-CCCeeeeCCcccCHHhHhhhcCCCcccCCCCC
Q psy8111 57 YESVFAN--SCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLV-DKQFGSKSEKIYCGNCYDAQFASRCDGCSEIF 133 (135)
Q Consensus 57 ~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I 133 (135)
|.++|++ +|.+|+++|.+.+.+|.++++.||++||+|..|+++|. +..|+..++++||..||.++|+++|..++.++
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~ 80 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGG 80 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCS
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCC
Confidence 5667888 99999999986677889999999999999999999995 55799999999999999999999999887664
Q ss_pred C
Q psy8111 134 K 134 (135)
Q Consensus 134 ~ 134 (135)
.
T Consensus 81 ~ 81 (123)
T 2l3k_A 81 S 81 (123)
T ss_dssp C
T ss_pred c
Confidence 3
No 50
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=104.96 Aligned_cols=63 Identities=19% Similarity=0.391 Sum_probs=59.6
Q ss_pred ccccccCcccc--ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFR--EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~--~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|. +.+|.|+++.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++|+
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEG-CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTT-TSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CcCccCCCccccCcEEEEeCCcccccc-CCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 57999999999 67899999999999 99999999999988999999999999999999999885
No 51
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.1e-18 Score=102.97 Aligned_cols=69 Identities=26% Similarity=0.581 Sum_probs=60.9
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcccC
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGC 129 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C 129 (135)
.++++|.+|+++|.+.+.+|.++++.||++||+|..|+++|.+..|+..+++|||+.||.++|+ +|+.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCCC
Confidence 3578999999999865678999999999999999999999988889999999999999999884 45543
No 52
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.3e-18 Score=111.45 Aligned_cols=68 Identities=29% Similarity=0.453 Sum_probs=61.6
Q ss_pred CCchhhcCCccccCcccceeCCccccccccccccccccCCC--CCeeeeCCcccCHHhHhhhcCCCcccCC
Q psy8111 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVD--KQFGSKSEKIYCGNCYDAQFASRCDGCS 130 (135)
Q Consensus 62 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~~C~~C~ 130 (135)
.++|++|+++|. +..++.++++.||++||+|+.|+++|.+ ..|+.++++|||+.||.++|+++|..|.
T Consensus 3 ~~~C~~C~~~I~-~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 3 LLTCGGCQQNIG-DRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72 (114)
T ss_dssp CBCBSSSCSCBC-SSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB
T ss_pred CCCCcCCCCeeC-CcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC
Confidence 478999999997 4457999999999999999999999985 5799999999999999999999988775
No 53
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.7e-18 Score=105.86 Aligned_cols=70 Identities=26% Similarity=0.516 Sum_probs=62.9
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcccCC
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCS 130 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~ 130 (135)
..+++|.+|+++|.+ ...|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|+.+.
T Consensus 13 ~~~~~C~~C~~~I~~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~ 82 (91)
T 2d8y_A 13 PARETCVECQKTVYP-MERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 82 (91)
T ss_dssp SSSCBCTTTCCBCCT-TSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCS
T ss_pred CCCCcCccCCCccCC-ceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccC
Confidence 346899999999974 3467899999999999999999999988899999999999999999999998554
No 54
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.74 E-value=1.1e-18 Score=102.80 Aligned_cols=67 Identities=24% Similarity=0.562 Sum_probs=60.6
Q ss_pred hhhhcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcC
Q psy8111 57 YESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123 (135)
Q Consensus 57 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~ 123 (135)
|...++++|++|+++|.+.+.++.+.++.||++||+|..|+++|.++.|+..+|+|||+.||.++|+
T Consensus 6 y~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 3446788999999999866767889999999999999999999998889999999999999999886
No 55
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=9.1e-19 Score=105.71 Aligned_cols=64 Identities=19% Similarity=0.364 Sum_probs=59.5
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeE-CCeeeccCchhhhcCCchhh
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLR-DDHPYCIKCYESVFANSCEE 67 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~-~~~~~C~~c~~~~~~~~C~~ 67 (135)
..|.+|+++|.+++|.|+++.||++ ||+|+.|+++|.+..|+.. +|++||+.||.++++++|++
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPG-CFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTT-TCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CccccCCCeecceeEEECCccccHH-hcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 5799999999999999999999999 9999999999998888876 78999999999999999863
No 56
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=1.2e-18 Score=102.92 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=58.0
Q ss_pred ccccccCccccc----cceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCch
Q psy8111 3 SAVKHQDKSFRE----DYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65 (135)
Q Consensus 3 ~~C~~C~~~i~~----~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C 65 (135)
..|.+|+++|.+ ++|.|+++.||++ ||+|+.|+++|.+..|+.++|++||..||.++++|++
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~-CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHND-CFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTT-TCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcc-cCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 579999999996 7899999999999 9999999999998899999999999999999998764
No 57
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=1.2e-18 Score=104.83 Aligned_cols=63 Identities=22% Similarity=0.544 Sum_probs=60.3
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|.+++|.|+++.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++|+
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHRE-CLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTT-TCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred CcCCCCCCEecCcEEEECCchhhhh-hCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 5799999999999999999999999 99999999999988899999999999999999999986
No 58
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.73 E-value=9.4e-19 Score=121.16 Aligned_cols=75 Identities=32% Similarity=0.595 Sum_probs=67.2
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCC--CCeeeeCCcccCHHhHhhhcCC--CcccCCCCCCC
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVD--KQFGSKSEKIYCGNCYDAQFAS--RCDGCSEIFKA 135 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~--~C~~C~~~I~~ 135 (135)
+..++|.+|+++|. +..++.++++.||++||+|..|+++|.+ ..|+.+++++||+.||.++|++ +|.+|+++|.+
T Consensus 3 l~~~~C~~C~~~I~-~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 3 LSWKRCAGCGGKIA-DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp -CCCBBTTTCCBCC-CSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CCCCcCccCCCEeC-CceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 34689999999997 4456899999999999999999999985 6899999999999999999999 79999999963
No 59
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=2.4e-18 Score=101.10 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=58.1
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCch
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C 65 (135)
..|.+|+++|.+++|.|+++.||++ ||+|..|+++|.+..|+.++|++||+.||.++++++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPE-CFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTT-TSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCS
T ss_pred CcCccCCCEecceEEEECccccccc-CCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCC
Confidence 5799999999999999999999999 9999999999999889999999999999999987643
No 60
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=5.2e-18 Score=102.02 Aligned_cols=65 Identities=25% Similarity=0.542 Sum_probs=58.7
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcc
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCD 127 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 127 (135)
.+.++|.+|+++|. +..|.++++.||++||+|..|+++|.+.. +.++++|||..||.++|+|+++
T Consensus 13 ~~~~~C~~C~~~I~--~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 13 LGKYICQKCHAIID--EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCBCTTTCCBCC--SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred cCCCCCccCCCEec--ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 34689999999996 66789999999999999999999999875 4889999999999999999875
No 61
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.7e-18 Score=105.41 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=59.6
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|.+++|.|+++.||++ ||+|..|+++|.+..|+.++|++||+.||.+++++++.
T Consensus 26 ~~C~~C~~~I~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVKARDKYRHPE-CFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CBCTTTCCBCCSCCEESSSCEECTT-TCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCcccCCCEecccEEEECCceECcc-CCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4699999999999999999999999 99999999999988899999999999999999998764
No 62
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=4.4e-18 Score=99.94 Aligned_cols=65 Identities=25% Similarity=0.612 Sum_probs=59.7
Q ss_pred cCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcc
Q psy8111 61 FANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCD 127 (135)
Q Consensus 61 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 127 (135)
..++|.+|+++|. +.+|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++..
T Consensus 4 ~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 4 GSSGCHQCGEFII--GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CSSBCSSSCCBCC--SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCcCccCCCEec--ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 4679999999996 5679999999999999999999999998899999999999999999998754
No 63
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=4.5e-18 Score=100.81 Aligned_cols=64 Identities=23% Similarity=0.528 Sum_probs=58.2
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCC-CCCeeeeCCcccCHHhHhhhcCCC
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLV-DKQFGSKSEKIYCGNCYDAQFASR 125 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~c~~~~~~~~ 125 (135)
+++++|++|+++|. +.+|.++++.||++||+|..|+++|. +..|+..++++||..||.++++..
T Consensus 3 ~~~~~C~~C~~~I~--~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 3 SGSSGCDSCEKYIT--GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCCSCSSSCCCCS--SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCcCCcccCCCEec--CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 46899999999996 47889999999999999999999998 678999999999999999988754
No 64
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.4e-18 Score=102.78 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=57.3
Q ss_pred ccccccCcccc--ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFR--EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~--~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|. +.++.++|+.||++ ||+|..|+++|.+..|+.++|++||+.||.++++++|+
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQ-CFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTT-TCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCchhcCCccCCCceEEEeCccEeccc-cCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 57999999996 56789999999999 99999999999988899999999999999999999885
No 65
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=6.1e-18 Score=103.85 Aligned_cols=66 Identities=24% Similarity=0.488 Sum_probs=60.5
Q ss_pred cCCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCccc
Q psy8111 61 FANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDG 128 (135)
Q Consensus 61 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 128 (135)
..++|.+|+++|. +++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|++++.+
T Consensus 24 ~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~g 89 (89)
T 1x64_A 24 RMPLCDKCGSGIV--GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSSG 89 (89)
T ss_dssp SCCBCTTTCCBCC--SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCCC
T ss_pred cCCCcccCCCEec--ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCCC
Confidence 3579999999996 46799999999999999999999999888999999999999999999999863
No 66
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.71 E-value=4.6e-18 Score=98.58 Aligned_cols=61 Identities=26% Similarity=0.733 Sum_probs=55.4
Q ss_pred cCCchhhcCCccccCcccceeCCcccc--ccccccccccccCCCCCeeeeCCcccC-HHhHhhh
Q psy8111 61 FANSCEECSKIIGIDSKDLSYKDKHWH--EACFSCSKCRQSLVDKQFGSKSEKIYC-GNCYDAQ 121 (135)
Q Consensus 61 ~~~~C~~C~~~I~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~C-~~c~~~~ 121 (135)
|+++|++|+++|.+++..|.++++.|| ++||+|+.|+++|.+..|+..+|+||| .+||.++
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 467999999999865678999999999 999999999999999899999999999 9998765
No 67
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=7.5e-18 Score=99.85 Aligned_cols=59 Identities=15% Similarity=0.270 Sum_probs=55.5
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccC-CCceEeECCeeeccCchhhhcC
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLT-GQRYVLRDDHPYCIKCYESVFA 62 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~-~~~~~~~~~~~~C~~c~~~~~~ 62 (135)
..|.+|+++|.+++|.|+|+.||++ ||+|+.|+++|. +..|+.++|++||..||.+.++
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~-CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPS-CALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTT-TSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CCcccCCCEecCeeEEeCCCCCCCC-cCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 5799999999999999999999999 999999999998 6789999999999999998765
No 68
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=6.2e-18 Score=101.65 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=56.7
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCch
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C 65 (135)
..|.+|+++|.+++|.|+|+.||++ ||+|..|+++|.+. ++.++|++||+.||.++++|.+
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~-CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPD-HFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTT-TSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSS
T ss_pred CCCccCCCEecceEEEECcceeCCC-CCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCC
Confidence 4699999999999999999999999 99999999999987 4599999999999999998754
No 69
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.1e-18 Score=104.93 Aligned_cols=63 Identities=16% Similarity=0.315 Sum_probs=59.0
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|.+++|.|+++.||++ ||+|..|+++|.+..|+.+++++||+.||.++++++..
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 16 PMCDKCGTGIVGVFVKLRDRHRHPE-CYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCSSSCCCCCSSCEECSSCEECTT-TTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CccccCCCCccCcEEEECcceeCcC-cCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4799999999999999999999999 99999999999877899999999999999999988753
No 70
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=2.5e-18 Score=103.35 Aligned_cols=64 Identities=22% Similarity=0.516 Sum_probs=59.3
Q ss_pred CCchhhcCCccccCcccceeCCccccccccccccccccCCCCCeeeeCCcccCHHhHhhhcCCCcc
Q psy8111 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCD 127 (135)
Q Consensus 62 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 127 (135)
.++|.+|+++|. +.+|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|+..
T Consensus 15 ~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIV--GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCC--SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCcc--CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 579999999996 4589999999999999999999999887899999999999999999999875
No 71
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=8.2e-18 Score=101.63 Aligned_cols=63 Identities=19% Similarity=0.390 Sum_probs=59.0
Q ss_pred ccccccCcccc--ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFR--EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~--~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|. +++|.|+++.||++ ||+|..|+++|.+..|+.++|++||+.||.+++++++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKD-CFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETT-TCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CcCccCCcccccCceEEEECccccccc-cCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 57999999999 67899999999999 99999999999988999999999999999999998764
No 72
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.67 E-value=2.7e-17 Score=95.27 Aligned_cols=57 Identities=14% Similarity=0.377 Sum_probs=52.9
Q ss_pred ccccccCcccc--ccceeeCCCccc--CCCCeeccccCCccCCCceEeECCeeec-cCchhhh
Q psy8111 3 SAVKHQDKSFR--EDYNKLGGKDRG--SGQHFCCWQCDESLTGQRYVLRDDHPYC-IKCYESV 60 (135)
Q Consensus 3 ~~C~~C~~~i~--~~~i~a~~~~~H--~~~cf~C~~C~~~l~~~~~~~~~~~~~C-~~c~~~~ 60 (135)
..|.+|+++|. ++.|.++|+.|| ++ ||+|+.|+++|.+..|+.++|++|| .+||.+.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~-CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTE-CFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTT-TSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCC-CEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 57999999999 789999999999 99 9999999999999899999999999 7888653
No 73
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=2.5e-17 Score=101.45 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=59.4
Q ss_pred ccccccCccccc-cceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFRE-DYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~~-~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|.+ +.|.|+++.||++ ||+|..|+++|.+..|+.++|++||+.||.++++++|.
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLANQQVFHIS-CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp CBCTTTCCBCCTTSEEECSSSEEETT-TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSC
T ss_pred CcCccCCCccCCceeEEECCCEECCC-CCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcC
Confidence 469999999985 7899999999999 99999999999988899999999999999999999987
No 74
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.66 E-value=4.6e-17 Score=112.98 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=65.2
Q ss_pred cccccCcccc-ccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccc
Q psy8111 4 AVKHQDKSFR-EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIG 73 (135)
Q Consensus 4 ~C~~C~~~i~-~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~ 73 (135)
.|.+|+++|. ++.|.++++.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++++|.+|++++.
T Consensus 117 ~C~~C~~~I~~~~~v~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 117 GCPRCGQAVYAAEKVIGAGKSWHKS-CFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp ECTTTSCEECSSSCEEETTEEECTT-TCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred cCCCCCCEecCcEEEecCCCccchh-cCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 5999999998 57899999999999 999999999999888999999999999999999999999999873
No 75
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=3.7e-17 Score=98.55 Aligned_cols=63 Identities=16% Similarity=0.326 Sum_probs=57.1
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCC-CceE-eECCeeeccCchhhhcCCchh
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTG-QRYV-LRDDHPYCIKCYESVFANSCE 66 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~-~~~~-~~~~~~~C~~c~~~~~~~~C~ 66 (135)
..|.+|+++|.+++|.|+++.||++ ||+|..|+++|.. ..|+ .++|++||+.||.+++++.++
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~-CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPE-CFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTT-SCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CcCccCCCCcCceEEEECCceeccc-cCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 4699999999999999999999999 9999999999964 5677 489999999999999987764
No 76
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=3.9e-17 Score=96.30 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=54.7
Q ss_pred ccccccCccccc--cceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcC
Q psy8111 3 SAVKHQDKSFRE--DYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62 (135)
Q Consensus 3 ~~C~~C~~~i~~--~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~ 62 (135)
..|.+|+++|.+ .+|.|+++.||++ ||+|+.|+++|.+..|+.++|++||+.||.++++
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVG-CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTT-TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCccCCCccCCCceEEEECCCeEccc-CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 579999999984 5899999999999 9999999999988889999999999999998874
No 77
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=103.86 Aligned_cols=63 Identities=32% Similarity=0.539 Sum_probs=56.3
Q ss_pred hcCCchhhcCCccccCcccceeCCccccccccccccccccCC--CCCeeeeCCcccCHHhHhhhcC
Q psy8111 60 VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLV--DKQFGSKSEKIYCGNCYDAQFA 123 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~C~~c~~~~~~ 123 (135)
.++++|++|+++|. +..+|.++++.||++||+|..|+++|. +..|+.++|+|||+.||.++|+
T Consensus 59 ~~~~~C~~C~~~I~-~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 59 LSWKRCAGCGGKIA-DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SSCSBBSSSSSBCC-SSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred ccCCcCcCCCCCcC-CcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 45689999999997 445689999999999999999999997 4579999999999999999986
No 78
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.2e-16 Score=96.67 Aligned_cols=65 Identities=17% Similarity=0.477 Sum_probs=56.6
Q ss_pred CCchhhcCCccccCcccceeCCccccccccccccccccCCCCCee--eeCCcccCHHhHhhhcCCCcc
Q psy8111 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFG--SKSEKIYCGNCYDAQFASRCD 127 (135)
Q Consensus 62 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~~~~~C~~c~~~~~~~~C~ 127 (135)
.++|.+|+++|.. .+.|.++++.||++||+|..|+++|.+..|+ ..++++||+.||.++|++-..
T Consensus 15 ~~~C~~C~~~I~~-~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 15 GDLCALCGEHLYV-LERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp SCBCSSSCCBCCT-TTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCCcccCCCccc-ceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 4789999999973 4567799999999999999999999998887 469999999999999886543
No 79
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-16 Score=95.34 Aligned_cols=56 Identities=18% Similarity=0.437 Sum_probs=52.7
Q ss_pred ccccccCccccc-----cceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhh
Q psy8111 3 SAVKHQDKSFRE-----DYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYES 59 (135)
Q Consensus 3 ~~C~~C~~~i~~-----~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 59 (135)
..|.+|+++|.+ ++|.|+++.||++ ||+|+.|+++|.+..|+.++|++||++||.+
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~-CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDY-CFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETT-TCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcc-cCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 579999999997 8899999999999 9999999999998899999999999999875
No 80
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.62 E-value=1.5e-16 Score=93.57 Aligned_cols=60 Identities=17% Similarity=0.337 Sum_probs=54.3
Q ss_pred cccccccCccccc-c-ceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcC
Q psy8111 2 ESAVKHQDKSFRE-D-YNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62 (135)
Q Consensus 2 ~~~C~~C~~~i~~-~-~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~ 62 (135)
...|.+|+++|.+ + ++.+.|+.||++ ||+|+.|+++|.+..|+.++|++||+.||.++|+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~-CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQ-CFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETT-TSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CccchhcCccccCCceEEEeCcCeeCcC-CCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 3579999999994 3 678999999999 9999999999998889999999999999998874
No 81
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.3e-16 Score=95.37 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=54.7
Q ss_pred ccccccCcccc-ccceeeCCCcccCCCCeeccccCCccCCCceE--eECCeeeccCchhhhcCCc
Q psy8111 3 SAVKHQDKSFR-EDYNKLGGKDRGSGQHFCCWQCDESLTGQRYV--LRDDHPYCIKCYESVFANS 64 (135)
Q Consensus 3 ~~C~~C~~~i~-~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~--~~~~~~~C~~c~~~~~~~~ 64 (135)
..|.+|+++|. ++.|.++++.||++ ||+|+.|+++|.+..|+ .++|++||+.||.+++++.
T Consensus 16 ~~C~~C~~~I~~~e~v~a~~~~wH~~-CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 16 DLCALCGEHLYVLERLCVNGHFFHRS-CFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp CBCSSSCCBCCTTTBCCBTTBCCBTT-TCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred CCCcccCCCcccceEEEECCCeeCCC-cCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCC
Confidence 46999999996 57888999999999 99999999999998887 4799999999999887643
No 82
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.61 E-value=8.2e-16 Score=99.63 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=63.2
Q ss_pred cccccCcccc--ccceeeCCCcccCCCCeeccccCCcc-CCCceEeECCeeeccCchhhhcCCchhhcCCccc
Q psy8111 4 AVKHQDKSFR--EDYNKLGGKDRGSGQHFCCWQCDESL-TGQRYVLRDDHPYCIKCYESVFANSCEECSKIIG 73 (135)
Q Consensus 4 ~C~~C~~~i~--~~~i~a~~~~~H~~~cf~C~~C~~~l-~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~ 73 (135)
.|.+|+++|. +.+|.|+++.||++ ||+|..|+++| .+..|+.++|++||..||.++++++|..++.++.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~-CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLE-CFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGS 81 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTT-TCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSC
T ss_pred cccCCCCeecCCceEEEECCcccccc-cCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCc
Confidence 6999999999 56789999999999 99999999999 4557999999999999999999999998887764
No 83
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-16 Score=102.82 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=54.2
Q ss_pred ccccccCccccccc-eeeCCCcccCCCCeeccccCCccC--CCceEeECCeeeccCchhhhcC
Q psy8111 3 SAVKHQDKSFREDY-NKLGGKDRGSGQHFCCWQCDESLT--GQRYVLRDDHPYCIKCYESVFA 62 (135)
Q Consensus 3 ~~C~~C~~~i~~~~-i~a~~~~~H~~~cf~C~~C~~~l~--~~~~~~~~~~~~C~~c~~~~~~ 62 (135)
..|.+|+++|.++. |.|+++.||++ ||+|..|+.+|. +..|+.++|++||+.||.++|+
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~-CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSR-CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETT-TSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEccc-ccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 46999999999875 99999999999 999999999997 4679999999999999998874
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=6.5e-15 Score=88.64 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=50.8
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECC-eeeccCchhhhc
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDD-HPYCIKCYESVF 61 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~-~~~C~~c~~~~~ 61 (135)
..|.+|+++|.+++|.|+++.||++ ||+|..|+++|....++..++ .+||..||.+++
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~-CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPD-CFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTT-TSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred CcCccccCEeccceEEECCceeCcc-CCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 5799999999999999999999999 999999999998766666555 579999987655
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.11 E-value=1.1e-06 Score=42.82 Aligned_cols=29 Identities=38% Similarity=0.909 Sum_probs=25.1
Q ss_pred CCchhhcCCccccCcccceeCCcccccccc
Q psy8111 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACF 91 (135)
Q Consensus 62 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 91 (135)
.++|..|++.+++. +.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~-Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPT-EKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGG-GCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecc-eeEEECCeEecccCC
Confidence 46899999999875 567789999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.07 E-value=1.4e-06 Score=42.43 Aligned_cols=29 Identities=14% Similarity=-0.018 Sum_probs=26.1
Q ss_pred CcccccccCcccc-ccceeeCCCcccCCCCe
Q psy8111 1 MESAVKHQDKSFR-EDYNKLGGKDRGSGQHF 30 (135)
Q Consensus 1 ~~~~C~~C~~~i~-~~~i~a~~~~~H~~~cf 30 (135)
|...|.+|++.+. .+.+.+.|+.||.. ||
T Consensus 2 m~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~-CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPTEKVNCLDKFWHKA-CF 31 (31)
T ss_dssp CCCBCSSSCSBCCGGGCCCSSSSCCCGG-GC
T ss_pred CCCcCCccCCEEecceeEEECCeEeccc-CC
Confidence 6788999999998 47788999999999 97
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=90.39 E-value=0.078 Score=33.21 Aligned_cols=102 Identities=19% Similarity=0.443 Sum_probs=64.5
Q ss_pred CeeccccCCccCCC-----c-eEeECCeeeccCchhhh--cCCchhhcCCccccCcccceeCCccccccccccccccccC
Q psy8111 29 HFCCWQCDESLTGQ-----R-YVLRDDHPYCIKCYESV--FANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSL 100 (135)
Q Consensus 29 cf~C~~C~~~l~~~-----~-~~~~~~~~~C~~c~~~~--~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 100 (135)
=+.|..|-..+... . ....=|..||..|..+. ....|..|++++.... ... ...-.+=..|..|...+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~-l~~---l~i~~~~~~C~iC~~~~ 82 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR-YHP---IYIGSGTVSCPICMDGY 82 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC-EEE---CBCSSSSCBCTTTCCBH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc-ccc---cccCCCCCCCCCCCCcc
Confidence 47788887766431 1 33445888998888664 3458999999985322 111 11223446688887776
Q ss_pred CCC-----C-eeeeCCcccCHHhHhhh--cCCCcccCCCCCC
Q psy8111 101 VDK-----Q-FGSKSEKIYCGNCYDAQ--FASRCDGCSEIFK 134 (135)
Q Consensus 101 ~~~-----~-~~~~~~~~~C~~c~~~~--~~~~C~~C~~~I~ 134 (135)
... . ....=|..||..|..+. ....|..|..+|.
T Consensus 83 ~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 83 SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp HHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred ccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 431 1 23335889999998653 3468999988775
No 88
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=90.03 E-value=0.047 Score=34.27 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=53.5
Q ss_pred ccccccCcccccc-------ceeeCCCcccCCCCe--------eccccCCccCCCceEeECCeeeccCchhhhcCCchhh
Q psy8111 3 SAVKHQDKSFRED-------YNKLGGKDRGSGQHF--------CCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEE 67 (135)
Q Consensus 3 ~~C~~C~~~i~~~-------~i~a~~~~~H~~~cf--------~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (135)
..|.-|...+.+. ++..=|..||.+ |+ +|-.|++.+........ +.......|+.
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~-Ci~~~~~~~~~CP~Cr~~~~~~~l~~l---------~i~~~~~~C~i 77 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ-CLRDSLKNANTCPTCRKKINHKRYHPI---------YIGSGTVSCPI 77 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHH-HHHHHHTTCSBCTTTCCBCTTTCEEEC---------BCSSSSCBCTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHH-HHHHHHHhCCCCCCCCCcCcccccccc---------ccCCCCCCCCC
Confidence 4688888887655 555567888877 76 78899999986644321 11122456788
Q ss_pred cCCccccC---cc--cceeCCcccccccc--------ccccccccC
Q psy8111 68 CSKIIGID---SK--DLSYKDKHWHEACF--------SCSKCRQSL 100 (135)
Q Consensus 68 C~~~I~~~---~~--~~~~~~~~~H~~Cf--------~C~~C~~~l 100 (135)
|...+... .. ++..=|..||..|. .|..|..++
T Consensus 78 C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 78 CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp TCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 87776310 01 23334667777765 355565554
No 89
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.81 E-value=0.59 Score=26.07 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=28.3
Q ss_pred cccccccccCCCCCeee-eCCcccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGS-KSEKIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
+.|..|...+.+. ... .=+..||..|..+.+ ...|..|.++|.
T Consensus 16 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 16 ILCSICKGYLIDA-TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp GSCTTTSSCCSSC-EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCChHHHCc-CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 5677776666543 333 457778888876544 567888887764
No 90
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.43 E-value=0.57 Score=25.62 Aligned_cols=43 Identities=23% Similarity=0.689 Sum_probs=31.5
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhc---CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF---ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~I~ 134 (135)
+.|..|...+.+. ....=|..||..|..+.+ ...|..|.++|.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 6678887776543 334568889999988765 357999998875
No 91
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=85.89 E-value=0.33 Score=28.46 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=10.0
Q ss_pred CcccccccCccccc
Q psy8111 1 MESAVKHQDKSFRE 14 (135)
Q Consensus 1 ~~~~C~~C~~~i~~ 14 (135)
|+..|..|+.+|..
T Consensus 1 M~~~CP~C~~~l~~ 14 (81)
T 2jrp_A 1 MEITCPVCHHALER 14 (81)
T ss_dssp CCCCCSSSCSCCEE
T ss_pred CCCCCCCCCCcccc
Confidence 67777777777753
No 92
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.80 E-value=0.79 Score=25.41 Aligned_cols=43 Identities=16% Similarity=0.384 Sum_probs=31.3
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhcC-----CCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA-----SRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~-----~~C~~C~~~I~ 134 (135)
+.|..|...+.+ .....=|..||..|..+.+. .+|..|.++|.
T Consensus 21 ~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 667788777654 23345588899999887663 48999998875
No 93
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.52 E-value=0.84 Score=28.10 Aligned_cols=24 Identities=29% Similarity=0.713 Sum_probs=11.1
Q ss_pred CcccCHHhHhhhcCCCcccCCCCC
Q psy8111 110 EKIYCGNCYDAQFASRCDGCSEIF 133 (135)
Q Consensus 110 ~~~~C~~c~~~~~~~~C~~C~~~I 133 (135)
|..||..|..+.+...|..|..++
T Consensus 42 gH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 42 EHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp SCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred CCHHHHHHHHHHhcCCCcCCCCcC
Confidence 444444444444444454444443
No 94
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=83.56 E-value=0.78 Score=25.87 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=27.1
Q ss_pred ccccccccccCCCCCeeeeCCcccCHHhHhhhcC---CCcccCCCCCC
Q psy8111 90 CFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA---SRCDGCSEIFK 134 (135)
Q Consensus 90 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~I~ 134 (135)
=|.|..|...+.+ .....-|..||..|..+.+. ..|..|.+++.
T Consensus 8 ~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3566777666644 24445677777777765543 35777776653
No 95
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=80.53 E-value=1.2 Score=23.99 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=23.2
Q ss_pred ccccccccCCCCCeeeeCCcccC-HHhHhh
Q psy8111 92 SCSKCRQSLVDKQFGSKSEKIYC-GNCYDA 120 (135)
Q Consensus 92 ~C~~C~~~l~~~~~~~~~~~~~C-~~c~~~ 120 (135)
.|..|+..+..+.-...+|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 36788888887777888999998 777654
No 96
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=80.10 E-value=1.7 Score=24.37 Aligned_cols=43 Identities=19% Similarity=0.506 Sum_probs=27.0
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhc---------CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF---------ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---------~~~C~~C~~~I~ 134 (135)
+.|..|...+.+. ....=|..||..|..+.+ ...|..|..++.
T Consensus 13 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 13 VTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 5566666665442 223457777888876543 357888888764
No 97
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=79.99 E-value=0.97 Score=27.53 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=4.9
Q ss_pred hhhcCCccc
Q psy8111 65 CEECSKIIG 73 (135)
Q Consensus 65 C~~C~~~I~ 73 (135)
|..|+.||.
T Consensus 4 C~~C~~Pi~ 12 (101)
T 3vk6_A 4 CDKCGLPIK 12 (101)
T ss_dssp CTTTCSBCS
T ss_pred cCccCCCeE
Confidence 555555553
No 98
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.53 E-value=1.2 Score=27.46 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=33.7
Q ss_pred CeeccccCCccCCCceEe-ECCeeeccCchhhhcCCchhhcCCccc
Q psy8111 29 HFCCWQCDESLTGQRYVL-RDDHPYCIKCYESVFANSCEECSKIIG 73 (135)
Q Consensus 29 cf~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~~~~C~~C~~~I~ 73 (135)
-+.|..|...+... ... .=|..||..|..+.....|..|+.++.
T Consensus 22 ~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 37888888777653 344 568889999988776678999998884
No 99
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.85 E-value=2.1 Score=24.15 Aligned_cols=43 Identities=21% Similarity=0.591 Sum_probs=28.6
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhc--------CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF--------ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--------~~~C~~C~~~I~ 134 (135)
+.|..|...+.+. ....=|..||..|..+.+ ...|..|..+|.
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 5677777766543 333457788888876532 568888887764
No 100
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=78.48 E-value=2.1 Score=24.48 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=22.9
Q ss_pred cccccccccCCCC--Ceee-eCCcccCHHhHhhhc---CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDK--QFGS-KSEKIYCGNCYDAQF---ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~--~~~~-~~~~~~C~~c~~~~~---~~~C~~C~~~I~ 134 (135)
+.|..|-.++... .+.. .=|..+|..|+.+.. ...|..|.+++.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3455555555322 1111 146666777765543 346777766653
No 101
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=77.82 E-value=0.55 Score=32.24 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=26.7
Q ss_pred CeeccccCCccCCCceEeECCeeeccCchhh
Q psy8111 29 HFCCWQCDESLTGQRYVLRDDHPYCIKCYES 59 (135)
Q Consensus 29 cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 59 (135)
=.+|+.|+.......-...+|+++|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3789999999987777789999999999864
No 102
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=77.43 E-value=3 Score=23.49 Aligned_cols=43 Identities=16% Similarity=0.593 Sum_probs=29.6
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhc--------CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF--------ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--------~~~C~~C~~~I~ 134 (135)
+.|..|...+... ....=+..||..|..+.+ ...|..|.++|.
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 5677787776543 334457888999876532 457999988775
No 103
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.12 E-value=1.5 Score=23.70 Aligned_cols=44 Identities=20% Similarity=0.616 Sum_probs=25.0
Q ss_pred cccccccc-cCCCCC---eeeeCCcccCHHhHhhhc---CCCcccCCCCCC
Q psy8111 91 FSCSKCRQ-SLVDKQ---FGSKSEKIYCGNCYDAQF---ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~-~l~~~~---~~~~~~~~~C~~c~~~~~---~~~C~~C~~~I~ 134 (135)
+.|..|.. .+.+.. ....=|..+|..|..+.+ ..+|..|.++|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 34566655 343321 122347777888876553 356888877764
No 104
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=76.09 E-value=1 Score=23.02 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=14.8
Q ss_pred eeeeCCcccCHHhHhhhc
Q psy8111 105 FGSKSEKIYCGNCYDAQF 122 (135)
Q Consensus 105 ~~~~~~~~~C~~c~~~~~ 122 (135)
|+..+-+|+|.+|++++-
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 666799999999998653
No 105
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=75.81 E-value=1.9 Score=24.12 Aligned_cols=42 Identities=19% Similarity=0.536 Sum_probs=27.9
Q ss_pred cccccccccCCCCCeeee-CCcccCHHhHhhhcC----CCcccCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSK-SEKIYCGNCYDAQFA----SRCDGCSEIF 133 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~-~~~~~C~~c~~~~~~----~~C~~C~~~I 133 (135)
+.|..|...+.+ ..... =|..||..|..+.+. ..|..|.+++
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 16 LLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 567777766654 34444 378888888766542 4788887764
No 106
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.20 E-value=1.9 Score=22.78 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=23.2
Q ss_pred eeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccc
Q psy8111 30 FCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIG 73 (135)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~ 73 (135)
+.|..|...+... ....=|..+|..|..+ ....|..|++.+.
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWP 48 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSS
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEee
Confidence 5666666655432 2223455666666554 2456777766663
No 107
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=75.04 E-value=1.4 Score=26.05 Aligned_cols=43 Identities=16% Similarity=0.451 Sum_probs=23.0
Q ss_pred cccccccccCCCCCeee-eCCcccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGS-KSEKIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
+.|..|...+.+. ... .=|..||..|..+.+ ...|..|..++.
T Consensus 23 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNIA-MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcccCChhhCCc-CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 4566665555432 222 346666777765443 245666666553
No 108
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=74.50 E-value=0.97 Score=31.00 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=26.1
Q ss_pred ccccccccccCCCCCeeeeCCcccCHHhHhh
Q psy8111 90 CFSCSKCRQSLVDKQFGSKSEKIYCGNCYDA 120 (135)
Q Consensus 90 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 120 (135)
=.+|..|+.......-...+|+++|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3569999999887767778999999999875
No 109
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.39 E-value=1.3 Score=24.36 Aligned_cols=40 Identities=20% Similarity=0.479 Sum_probs=18.6
Q ss_pred ccccccccCCCCCeeeeCCcccCHHhHhhhcC--CCcccCCCCC
Q psy8111 92 SCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA--SRCDGCSEIF 133 (135)
Q Consensus 92 ~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~--~~C~~C~~~I 133 (135)
.|..|...+.. ....=+..||..|..+.+. ..|..|.++|
T Consensus 17 ~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 17 ECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 44455444433 2223355556666544332 4455554444
No 110
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.65 E-value=3.9 Score=24.90 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=52.7
Q ss_pred cccccccCcccc-cccee--eCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccccCccc
Q psy8111 2 ESAVKHQDKSFR-EDYNK--LGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKD 78 (135)
Q Consensus 2 ~~~C~~C~~~i~-~~~i~--a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~ 78 (135)
+..|..|+..=. +++|. .=++.||.. |+.=. +.. ...+.-+|.+| ..|..|++.-. ++.+
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~-Cl~~~-----~~~----~~~~~W~C~~C------~~C~~C~~~~~-~~~l 69 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGM-CLDIA-----VTP----LKRAGWQCPEC------KVCQNCKQSGE-DSKM 69 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTT-TTTCC-----CCT----TTSTTCCCTTT------CCCTTTCCCSC-CTTE
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChH-HhCCc-----ccc----ccccCccCCcC------CcccccCccCC-CCCe
Confidence 356888877643 22333 235788988 75422 111 13466778777 36888888753 2223
Q ss_pred ce--eCCccccccccccccccccCCCCCeeeeCCcccCHHhHhh
Q psy8111 79 LS--YKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDA 120 (135)
Q Consensus 79 ~~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 120 (135)
+. .=++.||..|..- +|.. ...+.-+|..|...
T Consensus 70 l~Cd~C~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 70 LVCDTCDKGYHTFCLQP-----VMKS----VPTNGWKCKNCRIC 104 (111)
T ss_dssp EECSSSCCEEEGGGSSS-----CCSS----CCSSCCCCHHHHCC
T ss_pred eECCCCCcHHhHHhcCC-----cccc----CCCCCcCCcCCcCc
Confidence 33 2357799887653 2322 12356788888543
No 111
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=73.40 E-value=3.2 Score=22.45 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=18.8
Q ss_pred CchhhcCCccccCcccceeCCcccccccc--------ccccccccCC
Q psy8111 63 NSCEECSKIIGIDSKDLSYKDKHWHEACF--------SCSKCRQSLV 101 (135)
Q Consensus 63 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 101 (135)
..|..|...+. +..++..=+..||..|. +|..|...+.
T Consensus 6 ~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 35666666553 11122233455666654 2556665554
No 112
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.87 E-value=2.3 Score=25.55 Aligned_cols=43 Identities=21% Similarity=0.590 Sum_probs=23.9
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhcC-----CCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA-----SRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~-----~~C~~C~~~I~ 134 (135)
+.|..|...+.+. ....=|..||..|..+.+. ..|..|..+|.
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4566665555432 2233466677777655442 26777776654
No 113
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=71.39 E-value=3.2 Score=25.22 Aligned_cols=42 Identities=19% Similarity=0.517 Sum_probs=29.4
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhcC---CCcccCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA---SRCDGCSEIF 133 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~I 133 (135)
+.|..|...+.. .....=|..||..|..+.+. ..|..|..+|
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 667777777654 23344578889999877653 4788888776
No 114
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.04 E-value=2.8 Score=23.90 Aligned_cols=44 Identities=27% Similarity=0.608 Sum_probs=26.7
Q ss_pred cccccccccCCCCC---eeeeCCcccCHHhHhhhcC-----CCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQ---FGSKSEKIYCGNCYDAQFA-----SRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~---~~~~~~~~~C~~c~~~~~~-----~~C~~C~~~I~ 134 (135)
+.|..|...+.... ....=|..||..|..+.+. .+|..|.+++.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 55677766665432 2223477788888765432 56888877653
No 115
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=70.99 E-value=2.3 Score=25.62 Aligned_cols=42 Identities=17% Similarity=0.445 Sum_probs=19.6
Q ss_pred cccccccccCCCCCeee-eCCcccCHHhHhhhc--CCCcccCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGS-KSEKIYCGNCYDAQF--ASRCDGCSEIF 133 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~--~~~C~~C~~~I 133 (135)
+.|..|...+.+ .... .=|..||..|..+.+ ...|..|..+|
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 16 LMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp TBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 345555444433 2222 335555666654433 24555555544
No 116
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.43 E-value=3.5 Score=22.62 Aligned_cols=43 Identities=21% Similarity=0.510 Sum_probs=27.4
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
+.|..|...+.+. ....=+..||..|..+.+ ...|..|.++|.
T Consensus 16 ~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 16 PECAICLQTCVHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCccCCcccCCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 5567776666442 333457778888876543 357888887764
No 117
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=69.86 E-value=2.4 Score=27.72 Aligned_cols=42 Identities=19% Similarity=0.533 Sum_probs=21.5
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhc---CCCcccCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF---ASRCDGCSEIF 133 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~I 133 (135)
|.|..|...+.+- +...-|..||..|..+.+ ..+|..|..+|
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 4555555555432 333445666666655433 23566665554
No 118
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.81 E-value=2.6 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.746 Sum_probs=10.2
Q ss_pred CcccCHHhHhhhc--CCCcccCCCC
Q psy8111 110 EKIYCGNCYDAQF--ASRCDGCSEI 132 (135)
Q Consensus 110 ~~~~C~~c~~~~~--~~~C~~C~~~ 132 (135)
|..||..|..+.+ ...|..|.++
T Consensus 34 gH~fC~~Ci~~~~~~~~~CP~Cr~~ 58 (81)
T 2csy_A 34 RHYFCESCALEHFRATPRCYICDQP 58 (81)
T ss_dssp SCEEEHHHHHHHHHHCSBCSSSCCB
T ss_pred CCHhHHHHHHHHHHCCCcCCCcCcc
Confidence 4445555543322 2345555444
No 119
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=67.20 E-value=2.7 Score=24.35 Aligned_cols=42 Identities=19% Similarity=0.546 Sum_probs=29.6
Q ss_pred cccccccccCCCCCeeee-CCcccCHHhHhhhc----CCCcccCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSK-SEKIYCGNCYDAQF----ASRCDGCSEIF 133 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~-~~~~~C~~c~~~~~----~~~C~~C~~~I 133 (135)
+.|..|...+.+ ..... =|..||..|..+.+ ...|..|.+++
T Consensus 14 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 678888777754 34444 38889999986654 25899998875
No 120
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=65.97 E-value=3.8 Score=21.01 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=15.6
Q ss_pred CcccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 110 EKIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 110 ~~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
+..||..|..+.+ ...|..|.++|.
T Consensus 28 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 28 GHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 5566666665432 367888877764
No 121
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=65.31 E-value=1.6 Score=27.19 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=18.6
Q ss_pred hcCCchhhcCCccccCccccee-------C---Cccccccccc
Q psy8111 60 VFANSCEECSKIIGIDSKDLSY-------K---DKHWHEACFS 92 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~-------~---~~~~H~~Cf~ 92 (135)
.....|..|++.|..++..|.. . ...||..||.
T Consensus 18 S~RA~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 18 SSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp CSCCBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CCCCCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 3345777788888644322221 1 2245788876
No 122
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=64.88 E-value=4.9 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.543 Sum_probs=24.0
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
+.|..|...+.+ .....=|..||..|..+.+ ...|..|.++|.
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456666655543 2333346667777765433 345777766653
No 123
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=64.53 E-value=3.2 Score=26.96 Aligned_cols=44 Identities=16% Similarity=0.521 Sum_probs=28.4
Q ss_pred ccccccccccCCCCCeee-eCCcccCHHhHhhhc---CCCcccCCCCCC
Q psy8111 90 CFSCSKCRQSLVDKQFGS-KSEKIYCGNCYDAQF---ASRCDGCSEIFK 134 (135)
Q Consensus 90 Cf~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~---~~~C~~C~~~I~ 134 (135)
=+.|..|...+.+ .... .=|..||..|..+.+ ...|..|..+|.
T Consensus 54 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3567777777654 2333 457788888876654 346888877763
No 124
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=64.38 E-value=2.3 Score=23.62 Aligned_cols=28 Identities=21% Similarity=0.576 Sum_probs=18.2
Q ss_pred CchhhcCCccccCcccceeC---Cccccccc
Q psy8111 63 NSCEECSKIIGIDSKDLSYK---DKHWHEAC 90 (135)
Q Consensus 63 ~~C~~C~~~I~~~~~~~~~~---~~~~H~~C 90 (135)
..|..|++++.++...|.-. ..-||..|
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhc
Confidence 46888888886555555555 45567654
No 125
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.17 E-value=2.4 Score=22.91 Aligned_cols=44 Identities=18% Similarity=0.631 Sum_probs=27.2
Q ss_pred cccccccccCCCC-----C-eeeeCCcccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDK-----Q-FGSKSEKIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~-----~-~~~~~~~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
+.|..|...+.+. . ....=|..||..|..+.+ ...|..|.++|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4566665554321 1 223347788888876543 468999988875
No 126
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=63.98 E-value=5.1 Score=22.31 Aligned_cols=41 Identities=17% Similarity=0.445 Sum_probs=26.1
Q ss_pred cccccccccCCCCCeeeeCCcc-cCHHhHhhhcCCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKI-YCGNCYDAQFASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~-~C~~c~~~~~~~~C~~C~~~I~ 134 (135)
+.|..|...+.+. ....=|.. +|..|..+. .+|..|.++|.
T Consensus 25 ~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV--DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCCE-EEETTCCBCCCHHHHTTC--SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCE-EEcCCCChhHHHHhhhcC--ccCCCcCcCcc
Confidence 3566666555432 22334666 888887765 78888887764
No 127
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=63.85 E-value=3.5 Score=25.42 Aligned_cols=43 Identities=21% Similarity=0.588 Sum_probs=26.0
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhc---CCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF---ASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~I~ 134 (135)
+.|..|...+.+ .....=|..||..|..+.+ ...|..|..+|.
T Consensus 53 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 567777666653 2333457777777775543 236777777663
No 128
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=63.73 E-value=3.9 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=10.8
Q ss_pred CCcccCHHhHhhhc---CCCcccCCCCC
Q psy8111 109 SEKIYCGNCYDAQF---ASRCDGCSEIF 133 (135)
Q Consensus 109 ~~~~~C~~c~~~~~---~~~C~~C~~~I 133 (135)
=|..||..|..+.+ ...|..|..+|
T Consensus 41 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 41 CKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp TSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 34445555543322 23455554443
No 129
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=63.34 E-value=8.7 Score=23.48 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=10.9
Q ss_pred CCeeeccCchhhhcCCchhhcCCcc
Q psy8111 48 DDHPYCIKCYESVFANSCEECSKII 72 (135)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~I 72 (135)
+|.-||..| .|..|++..
T Consensus 51 ~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 51 YGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp SSCCCCGGG-------BCTTTCSBC
T ss_pred CCCEECCCC-------CCCcCCCCC
Confidence 456667666 466666654
No 130
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=63.29 E-value=1.6 Score=26.71 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=21.0
Q ss_pred hhhhcCCchhhcCCccccCccccee-------CC---ccccccccc
Q psy8111 57 YESVFANSCEECSKIIGIDSKDLSY-------KD---KHWHEACFS 92 (135)
Q Consensus 57 ~~~~~~~~C~~C~~~I~~~~~~~~~-------~~---~~~H~~Cf~ 92 (135)
|.+.....|..|++.|..++..|.. .+ ..||..||.
T Consensus 20 yAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred EeCCCCCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 3444446888888888644432221 11 346888886
No 131
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.76 E-value=6.3 Score=21.93 Aligned_cols=41 Identities=17% Similarity=0.445 Sum_probs=25.6
Q ss_pred cccccccccCCCCCeeeeCCcc-cCHHhHhhhcCCCcccCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKI-YCGNCYDAQFASRCDGCSEIFK 134 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~-~C~~c~~~~~~~~C~~C~~~I~ 134 (135)
+.|..|...+.+- ....=|.. +|..|..+. .+|..|.++|.
T Consensus 26 ~~C~IC~~~~~~~-~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 67 (75)
T 2ecg_A 26 KLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV--DKCPMCYTVIT 67 (75)
T ss_dssp HSCSSSCSSCCCB-CCSSSCCCCBCHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCcCCCCCCCE-EEecCCCHHHHHHHhhCC--CCCccCCceec
Confidence 3566665555432 22334556 888888653 68888887774
No 132
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=62.67 E-value=2.3 Score=25.31 Aligned_cols=42 Identities=24% Similarity=0.553 Sum_probs=19.4
Q ss_pred cccccccccCCCCCee-eeCCcccCHHhHhhhc--C-CCcccCCCCC
Q psy8111 91 FSCSKCRQSLVDKQFG-SKSEKIYCGNCYDAQF--A-SRCDGCSEIF 133 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~-~~~~~~~C~~c~~~~~--~-~~C~~C~~~I 133 (135)
+.|..|...+.. ... ..=|..||..|..+.+ . ..|..|..+|
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 345555554432 122 2235556666654332 1 3566665554
No 133
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=61.00 E-value=8.3 Score=21.35 Aligned_cols=10 Identities=20% Similarity=0.488 Sum_probs=5.2
Q ss_pred CchhhcCCcc
Q psy8111 63 NSCEECSKII 72 (135)
Q Consensus 63 ~~C~~C~~~I 72 (135)
..|..|...+
T Consensus 16 ~~C~IC~~~~ 25 (78)
T 2ect_A 16 LECPVCKEDY 25 (78)
T ss_dssp CCCTTTTSCC
T ss_pred CCCeeCCccc
Confidence 3455555554
No 134
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=60.40 E-value=3.5 Score=25.25 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=11.1
Q ss_pred chhhcCCccccCcccceeCCcccccccc
Q psy8111 64 SCEECSKIIGIDSKDLSYKDKHWHEACF 91 (135)
Q Consensus 64 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 91 (135)
.|..|...+. +.++..=|..|+..|+
T Consensus 20 ~C~IC~~~~~--~p~~~~CgH~fC~~Ci 45 (118)
T 3hct_A 20 ECPICLMALR--EAVQTPCGHRFCKACI 45 (118)
T ss_dssp BCTTTCSBCS--SEEECTTSCEEEHHHH
T ss_pred CCCcCChhhc--CeEECCcCChhhHHHH
Confidence 4555554442 2222233444554443
No 135
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.37 E-value=9.7 Score=20.82 Aligned_cols=37 Identities=16% Similarity=0.528 Sum_probs=24.9
Q ss_pred Ccccccccccccccccc-CCCCCeeee--CCcccCHHhHhhh
Q psy8111 83 DKHWHEACFSCSKCRQS-LVDKQFGSK--SEKIYCGNCYDAQ 121 (135)
Q Consensus 83 ~~~~H~~Cf~C~~C~~~-l~~~~~~~~--~~~~~C~~c~~~~ 121 (135)
...+|+ ..|..|+.. |.+..|.-. .+--+|..||.+.
T Consensus 6 ~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 6 SGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 456677 788888864 666554433 3566899998764
No 136
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=60.35 E-value=5 Score=24.22 Aligned_cols=61 Identities=21% Similarity=0.425 Sum_probs=33.9
Q ss_pred eeccccCCccCCCceEeECCeeeccCchhh-hcCCchhhcCCccccCcccceeCCccccccccccccccccCCCC
Q psy8111 30 FCCWQCDESLTGQRYVLRDDHPYCIKCYES-VFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDK 103 (135)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~-~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~ 103 (135)
..|..|+.+|+. .++..+|..|... .....|+.|++++. ++.|=|.. =|.|..|+..++.+
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le----vLkACGAv----dYFC~~chgLiSKk 94 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ----VLKACGAV----DYFCQHGHGLISKK 94 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE----EEEETTEE----EEEETTTTEEECTT
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH----HHHHhcCc----chhhccCCceeecc
Confidence 466777666642 3455556655432 11357888888883 45554421 14566676666544
No 137
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=60.16 E-value=10 Score=19.27 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=14.2
Q ss_pred CcccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 110 EKIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 110 ~~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
+..||..|..+.+ ...|..|.++|.
T Consensus 28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 28 GHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4455555554322 356777877664
No 138
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=59.92 E-value=9.2 Score=22.79 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=32.4
Q ss_pred ccccccccccccCCCCCeeeeCCcccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 88 EACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 88 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
++=|.|..|...+.+ .+....|..||+.|..+-+ ...|..|++++.
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 566888888777755 3555578888888876544 357888877664
No 139
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=59.74 E-value=1.8 Score=26.76 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=19.5
Q ss_pred hcCCchhhcCCccccCccccee---------CC---ccccccccc
Q psy8111 60 VFANSCEECSKIIGIDSKDLSY---------KD---KHWHEACFS 92 (135)
Q Consensus 60 ~~~~~C~~C~~~I~~~~~~~~~---------~~---~~~H~~Cf~ 92 (135)
.....|.+|++.|..++..|.. .| ..||..||.
T Consensus 17 S~Ra~Ck~C~~kI~Kg~lRig~~~~~~~~~~~G~~~~W~H~~Cf~ 61 (111)
T 3odc_A 17 SNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 61 (111)
T ss_dssp SSCCBCTTTCCBCCTTCEEEEEEEEETTEEEEEEEEEEECHHHHH
T ss_pred cCCccccccCCCccCCceEEeEEecCccccCCCCcceeEChhhcc
Confidence 3345788888888644333221 12 346888887
No 140
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=59.36 E-value=1.4 Score=28.31 Aligned_cols=43 Identities=26% Similarity=0.635 Sum_probs=26.1
Q ss_pred ccccccccccCCCCCeeeeCCcccCHHhHhhhcC---CCcccCCCCC
Q psy8111 90 CFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA---SRCDGCSEIF 133 (135)
Q Consensus 90 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~I 133 (135)
=|.|..|...+..- +...=|..||..|..+.+. ..|..|..+|
T Consensus 31 ~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 36677777666543 4344577777777765443 3677776543
No 141
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=59.33 E-value=1.8 Score=27.00 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=21.9
Q ss_pred hhhhcCCchhhcCCccccCccccee-------CC---ccccccccc
Q psy8111 57 YESVFANSCEECSKIIGIDSKDLSY-------KD---KHWHEACFS 92 (135)
Q Consensus 57 ~~~~~~~~C~~C~~~I~~~~~~~~~-------~~---~~~H~~Cf~ 92 (135)
|.+.....|..|++.|..++..|.. .+ ..||..||.
T Consensus 33 yAkS~RA~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~ 78 (116)
T 3od8_A 33 YAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 78 (116)
T ss_dssp ECSSSCCBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHH
T ss_pred EeccCCccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccCh
Confidence 4444456899999999644433321 12 236888887
No 142
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=57.51 E-value=8.2 Score=20.80 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=14.0
Q ss_pred CcccCHHhHhhh--cCCCcccCCCCCC
Q psy8111 110 EKIYCGNCYDAQ--FASRCDGCSEIFK 134 (135)
Q Consensus 110 ~~~~C~~c~~~~--~~~~C~~C~~~I~ 134 (135)
+..||..|..+. ....|..|..+|.
T Consensus 36 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 36 MHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 555666665432 2345777766654
No 143
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=56.32 E-value=5.5 Score=23.14 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=17.1
Q ss_pred eCCCcccCCCCeeccccCC-ccCCCce
Q psy8111 19 LGGKDRGSGQHFCCWQCDE-SLTGQRY 44 (135)
Q Consensus 19 a~~~~~H~~~cf~C~~C~~-~l~~~~~ 44 (135)
+....+|.. +.|..|++ +|.+.+|
T Consensus 13 ~~~~~~H~~--~~Cd~C~~~pI~G~Ry 37 (82)
T 2fc7_A 13 ESGFVQHVG--FKCDNCGIEPIQGVRW 37 (82)
T ss_dssp STTSCEESS--CCCSSSCCSSEESCEE
T ss_pred cccCCeeCc--CCCCCCCCCcceeceE
Confidence 345678888 89999985 6766533
No 144
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=55.11 E-value=2.6 Score=26.30 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=17.7
Q ss_pred CCchhhcCCccccCccccee---------C---Cccccccccc
Q psy8111 62 ANSCEECSKIIGIDSKDLSY---------K---DKHWHEACFS 92 (135)
Q Consensus 62 ~~~C~~C~~~I~~~~~~~~~---------~---~~~~H~~Cf~ 92 (135)
...|..|++.|..++..|.. . ...||..||.
T Consensus 15 RA~Ck~C~~kI~KgeLRiG~~v~~~~~~~~g~~~~W~H~~Cf~ 57 (117)
T 1uw0_A 15 TAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 57 (117)
T ss_dssp CEECTTSSCEECTTCEEEEEEEECTTCSSCCEECCBCCHHHHH
T ss_pred CccchhhCcccCCCCeEEEEEeccccccCCCCCCeeECcccch
Confidence 35677788888644322211 1 1345888886
No 145
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=54.37 E-value=5.7 Score=25.59 Aligned_cols=44 Identities=18% Similarity=0.533 Sum_probs=29.4
Q ss_pred ccccccccccCCCCCeeeeCCcccCHHhHhhhcC---CCcccCCCCCC
Q psy8111 90 CFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA---SRCDGCSEIFK 134 (135)
Q Consensus 90 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~I~ 134 (135)
=+.|..|...+.+ .....=|..||..|..+.+. ..|..|..+|.
T Consensus 78 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 3677888777654 23345578888888765543 36888887764
No 146
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.21 E-value=15 Score=18.78 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhh
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQ 121 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 121 (135)
+.|..|...+.+. ....=|..||..|..+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHH
Confidence 5577777766543 33445778888887765
No 147
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=53.80 E-value=3.8 Score=21.65 Aligned_cols=44 Identities=25% Similarity=0.578 Sum_probs=29.6
Q ss_pred eeccccCCccCCC-----c-eEeECCeeeccCchhhhc--CCchhhcCCccc
Q psy8111 30 FCCWQCDESLTGQ-----R-YVLRDDHPYCIKCYESVF--ANSCEECSKIIG 73 (135)
Q Consensus 30 f~C~~C~~~l~~~-----~-~~~~~~~~~C~~c~~~~~--~~~C~~C~~~I~ 73 (135)
+.|..|...+... . ....=|..||..|..+.. ...|..|+.++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 6677777666431 1 334457888888886532 468999999985
No 148
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.05 E-value=5.4 Score=22.68 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=13.0
Q ss_pred CchhhcCCccccCcccceeCCcccccccc
Q psy8111 63 NSCEECSKIIGIDSKDLSYKDKHWHEACF 91 (135)
Q Consensus 63 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 91 (135)
..|+.|...|.++. .-..=+..||..|+
T Consensus 16 ~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 16 KICNICHSLLIQGQ-SCETCGIRMHLPCV 43 (74)
T ss_dssp CBCSSSCCBCSSSE-ECSSSCCEECHHHH
T ss_pred CcCcchhhHcccCC-ccCCCCchhhHHHH
Confidence 45666666664321 11122344555554
No 149
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=53.04 E-value=12 Score=22.11 Aligned_cols=46 Identities=7% Similarity=-0.164 Sum_probs=30.7
Q ss_pred ccccccccccccCCCCCeeeeCC-cccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 88 EACFSCSKCRQSLVDKQFGSKSE-KIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 88 ~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
++=|.|..|...+.+ .+....| ..||+.|..+-+ ...|..|++++.
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 455778888777755 3445566 888888876544 356777777654
No 150
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.22 E-value=12 Score=19.40 Aligned_cols=13 Identities=31% Similarity=1.045 Sum_probs=7.4
Q ss_pred cccccccccCCCC
Q psy8111 91 FSCSKCRQSLVDK 103 (135)
Q Consensus 91 f~C~~C~~~l~~~ 103 (135)
++|-.|++.++.+
T Consensus 4 Y~C~rCg~~fs~~ 16 (48)
T 4ayb_P 4 YRCGKCWKTFTDE 16 (48)
T ss_dssp -CCCCTTTTCCCC
T ss_pred EEeeccCCCccHH
Confidence 4566666666554
No 151
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.86 E-value=10 Score=20.75 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=13.6
Q ss_pred CcccCHHhHhhh--cCCCcccCCCCCC
Q psy8111 110 EKIYCGNCYDAQ--FASRCDGCSEIFK 134 (135)
Q Consensus 110 ~~~~C~~c~~~~--~~~~C~~C~~~I~ 134 (135)
+..||..|..+. ....|..|.++|.
T Consensus 37 ~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 37 KHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp TEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 555666665432 2345666666553
No 152
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=50.77 E-value=2.9 Score=22.78 Aligned_cols=45 Identities=24% Similarity=0.525 Sum_probs=30.9
Q ss_pred CeeccccCCccCCC-----c-eEeECCeeeccCchhhh--cCCchhhcCCccc
Q psy8111 29 HFCCWQCDESLTGQ-----R-YVLRDDHPYCIKCYESV--FANSCEECSKIIG 73 (135)
Q Consensus 29 cf~C~~C~~~l~~~-----~-~~~~~~~~~C~~c~~~~--~~~~C~~C~~~I~ 73 (135)
-+.|..|...+... . ....=|..||..|..+. ....|..|..++.
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 47788887766431 1 23345788999888652 3468999999986
No 153
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.92 E-value=11 Score=20.76 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=14.8
Q ss_pred CcccCHHhHhhh--cCCCcccCCCCCCC
Q psy8111 110 EKIYCGNCYDAQ--FASRCDGCSEIFKA 135 (135)
Q Consensus 110 ~~~~C~~c~~~~--~~~~C~~C~~~I~~ 135 (135)
+..||..|..+. ....|..|.++|.+
T Consensus 45 ~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 45 NHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp TEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 555666665432 23567777776653
No 154
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=49.62 E-value=12 Score=21.42 Aligned_cols=46 Identities=7% Similarity=-0.049 Sum_probs=29.2
Q ss_pred ccccccccccccCCCCCeeeeCCcccCHHhHhhhc--CCCcccCCCCCC
Q psy8111 88 EACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 88 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
++=|.|..|...+.+ .+....|..||+.|..+-+ ...|..|++++.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 345777777777655 3444577888888865433 356777776653
No 155
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=48.58 E-value=7.2 Score=27.26 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=15.4
Q ss_pred CCchhhcCCccccCcccceeCCcccccccc
Q psy8111 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACF 91 (135)
Q Consensus 62 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 91 (135)
.+.|..|...|..+ ..-.--+..||..|+
T Consensus 180 i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 180 VKICNICHSLLIQG-QSCETCGIRMHLPCV 208 (238)
T ss_dssp CCBCTTTCSBCSSC-EECSSSCCEECHHHH
T ss_pred CCcCcchhhHHhCC-cccCccChHHHHHHH
Confidence 36788888888532 111112345555555
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=47.74 E-value=12 Score=25.96 Aligned_cols=47 Identities=4% Similarity=-0.101 Sum_probs=35.0
Q ss_pred cccccccccccccCCCCCeeeeCCcccCHHhHhhhc---CCCcccCCCCCC
Q psy8111 87 HEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF---ASRCDGCSEIFK 134 (135)
Q Consensus 87 H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~I~ 134 (135)
-+.-|.|..|...+.+ .+....|..||+.|..+-+ +..|..|++++.
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3567889999888865 3556689999999976543 344999998875
No 157
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.08 E-value=8.9 Score=20.21 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=8.2
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
=|.|..|++.+..
T Consensus 18 ~~~C~~C~k~f~~ 30 (73)
T 2ctu_A 18 SQKCSKCGIIFIR 30 (73)
T ss_dssp EEECSSSCCEEEC
T ss_pred CeeCCcccchhCC
Confidence 4677777666544
No 158
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=47.03 E-value=5.1 Score=20.24 Aligned_cols=15 Identities=7% Similarity=-0.073 Sum_probs=10.8
Q ss_pred ccccccCccccccce
Q psy8111 3 SAVKHQDKSFREDYN 17 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i 17 (135)
+.|..|++||.-+.|
T Consensus 18 RvC~~CgkPi~lsAI 32 (44)
T 2lo3_A 18 RVCEKCGKPLALTAI 32 (44)
T ss_dssp EECTTTCCEEETTTH
T ss_pred hhhcccCCcchHHHH
Confidence 358899999875543
No 159
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=47.01 E-value=3.9 Score=28.45 Aligned_cols=49 Identities=27% Similarity=0.455 Sum_probs=25.8
Q ss_pred eEeECCeeeccCchhhhcCCchhhcCCccccCccccee-------CC---cccccccccc
Q psy8111 44 YVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSY-------KD---KHWHEACFSC 93 (135)
Q Consensus 44 ~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~-------~~---~~~H~~Cf~C 93 (135)
..+.++.+|..+ |.+.....|..|++.|..++..|.. .+ .-||..||.=
T Consensus 22 ~~~~~d~~y~vE-yAkS~RA~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~~~~W~H~~Cf~~ 80 (223)
T 4av1_A 22 LGSHSDKLYRVE-YAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWK 80 (223)
T ss_dssp -----CCSEEEE-ECSSTTCBCTTTCCBCCTTCEEEEEEEEETTTTEEEEEEEEHHHHTT
T ss_pred cccCCCCcEEEE-EecCCCccCcccCCccCCCceEEEEEecCCCCCCCCceeEChhhhhh
Confidence 334445555443 4444456899999999644433321 11 3468888873
No 160
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.79 E-value=7.8 Score=20.49 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=21.6
Q ss_pred cccccccccCCCCCeeeeCCcccCHHhHhhhc
Q psy8111 91 FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF 122 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~ 122 (135)
+.|..|...+.+. ....=|..||..|..+.+
T Consensus 21 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQKP-VTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCSSC-EECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhCCe-EEeCCCCcchHHHHHHHH
Confidence 6678887777543 444568889999987654
No 161
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.16 E-value=3.8 Score=24.31 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=10.8
Q ss_pred CeeccccCCccCCC
Q psy8111 29 HFCCWQCDESLTGQ 42 (135)
Q Consensus 29 cf~C~~C~~~l~~~ 42 (135)
=|.|..|++.+...
T Consensus 19 ~~~C~~C~k~f~~~ 32 (115)
T 2dmi_A 19 KFRCKDCSAAYDTL 32 (115)
T ss_dssp SEEBSSSSCEESSH
T ss_pred CEECCccCchhcCH
Confidence 58999998877653
No 162
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.70 E-value=13 Score=21.12 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCeeeccCchhhh----cCCchhhcCCccccCccccee--CCccccccccc
Q psy8111 48 DDHPYCIKCYESV----FANSCEECSKIIGIDSKDLSY--KDKHWHEACFS 92 (135)
Q Consensus 48 ~~~~~C~~c~~~~----~~~~C~~C~~~I~~~~~~~~~--~~~~~H~~Cf~ 92 (135)
.+.++|..|..+. ..-.|..|++.-. .+.+|.- =++.||..|..
T Consensus 8 ~~~~~c~~C~~~~~w~C~~c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 8 RNDTECDLCGGDPEKKCHSCSCRVCGGKHE-PNMQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp CCCCCCTTTCSCSSSCCSSSSCSSSCCCCC-STTEEECSSSCCEEETTSSS
T ss_pred cCCccChhhcCCCCeECCCCCCcCcCCcCC-CCCEEEcCCCCccccccccC
Confidence 3556666664432 1125666776432 2223322 24678887754
No 163
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=45.60 E-value=16 Score=21.08 Aligned_cols=45 Identities=16% Similarity=0.382 Sum_probs=26.8
Q ss_pred cccccccccCCCCC-ee-eeCCcccCHHhHhhh--cCCCcccCCCCCCC
Q psy8111 91 FSCSKCRQSLVDKQ-FG-SKSEKIYCGNCYDAQ--FASRCDGCSEIFKA 135 (135)
Q Consensus 91 f~C~~C~~~l~~~~-~~-~~~~~~~C~~c~~~~--~~~~C~~C~~~I~~ 135 (135)
..|..|...+..+. .. ..=+..||..|..+. ....|..|..+|.+
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45666666654332 22 224677788887553 24578888877754
No 164
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=44.52 E-value=3.6 Score=27.01 Aligned_cols=110 Identities=20% Similarity=0.475 Sum_probs=60.2
Q ss_pred CCcccCCCCeeccccCCccCCCc-------eEeECCeeeccCchhhh--cCC--chhhcCCccccCcccc------eeCC
Q psy8111 21 GKDRGSGQHFCCWQCDESLTGQR-------YVLRDDHPYCIKCYESV--FAN--SCEECSKIIGIDSKDL------SYKD 83 (135)
Q Consensus 21 ~~~~H~~~cf~C~~C~~~l~~~~-------~~~~~~~~~C~~c~~~~--~~~--~C~~C~~~I~~~~~~~------~~~~ 83 (135)
+..-|.+ =+.|..|...+.... +......-+|..|.... +.+ .|..|...+.+..... ...+
T Consensus 20 sH~~H~~-~~~C~~CH~~~~~~~~g~~~~t~a~~~~~~~C~~CH~g~~af~~~~~C~~CH~~~~~~~i~~~~~~~~V~F~ 98 (158)
T 3oue_A 20 SHEFHLG-MYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTSVGEAYFD 98 (158)
T ss_dssp CHHHHHT-TCCGGGTBTTTBCSSSCCCCCCHHHHHTTCGGGGTBSSSSBCCTTSCHHHHCGGGCCCCEEEEETTEEEEEC
T ss_pred ChHHHCC-CCChhhhccChhcccccccccccccCCCCCchhhhcCCcccCChhhhchhhhhcccccceEeecCCCCccCC
Confidence 4455655 457777776554332 11222335788888733 333 6999987432111111 1123
Q ss_pred ccccccccccccccccCCCCC-----eeee--CCcccCHHhHh--hhcCC--CcccCCC
Q psy8111 84 KHWHEACFSCSKCRQSLVDKQ-----FGSK--SEKIYCGNCYD--AQFAS--RCDGCSE 131 (135)
Q Consensus 84 ~~~H~~Cf~C~~C~~~l~~~~-----~~~~--~~~~~C~~c~~--~~~~~--~C~~C~~ 131 (135)
...|..=+.|..|...+.... +... ....+|..|.. +.|+. .|..|.+
T Consensus 99 H~~H~~~~~C~~CH~~v~~~~~~~~~~tm~~~~~gk~Cg~CH~gk~Af~~~~~C~~CHk 157 (158)
T 3oue_A 99 HDIHLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVCHNGKDAFSVADDCVKCHN 157 (158)
T ss_dssp HHHHHTTCCGGGTBTTTBCSSTTSSCCCHHHHHTTCGGGGTBTTTSBCCSSSCGGGTEE
T ss_pred hhHhCCCCChhhhccchhhcccCCCCcchhhhhccChhHhhcCCCccCCCcccHHHHcc
Confidence 345754488999988874321 1111 13358999986 34554 7988864
No 165
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.14 E-value=4.8 Score=25.72 Aligned_cols=36 Identities=25% Similarity=0.535 Sum_probs=20.5
Q ss_pred hhhhcCCchhhcCCccccCccccee---------CC---ccccccccc
Q psy8111 57 YESVFANSCEECSKIIGIDSKDLSY---------KD---KHWHEACFS 92 (135)
Q Consensus 57 ~~~~~~~~C~~C~~~I~~~~~~~~~---------~~---~~~H~~Cf~ 92 (135)
|.+.....|..|++.|.-++..|.. .+ ..||..||.
T Consensus 22 YAKSgRA~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~ 69 (134)
T 2cs2_A 22 YAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 69 (134)
T ss_dssp ECSSSCCBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHH
T ss_pred EeCCCCccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcCh
Confidence 3333346788888888644422221 12 246888887
No 166
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=40.73 E-value=13 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.628 Sum_probs=12.0
Q ss_pred chhhcCCccccCcccceeC---Cccccccc
Q psy8111 64 SCEECSKIIGIDSKDLSYK---DKHWHEAC 90 (135)
Q Consensus 64 ~C~~C~~~I~~~~~~~~~~---~~~~H~~C 90 (135)
.|..|+++..+++..|.-. ..-||..|
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~C 34 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHREC 34 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGG
T ss_pred CCCCCCCccCCCCCEEEecCCccccccccc
Confidence 4555555553333333333 23455544
No 167
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=38.64 E-value=14 Score=19.79 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=17.4
Q ss_pred Ccc-cCHHhHhhhc--CCCcccCCCCCC
Q psy8111 110 EKI-YCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 110 ~~~-~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
|.. +|..|..+.. +.+|..|.++|.
T Consensus 28 gH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 28 GHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp EEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 444 7888876543 358888888874
No 168
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=38.55 E-value=13 Score=14.93 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=6.1
Q ss_pred eeccccCCccC
Q psy8111 30 FCCWQCDESLT 40 (135)
Q Consensus 30 f~C~~C~~~l~ 40 (135)
|.|..|++.+.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 45566665554
No 169
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=37.83 E-value=7.4 Score=26.30 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=20.5
Q ss_pred cccccccccccCCCCCeeeeCCcccCHHhHhhhc
Q psy8111 89 ACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF 122 (135)
Q Consensus 89 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~ 122 (135)
.=.+|..|+...... |+++|..|+.+.+
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~~~~ 189 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQGGSP 189 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHTTCC
T ss_pred CCEECCcCCCChhhC------CCcCCccccCCCC
Confidence 335688898776443 8899999997654
No 170
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=37.53 E-value=21 Score=23.78 Aligned_cols=46 Identities=4% Similarity=-0.097 Sum_probs=34.8
Q ss_pred ccccccccccccCCCCCeeeeCCcccCHHhHhhhc---CCCcccCCCCCC
Q psy8111 88 EACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQF---ASRCDGCSEIFK 134 (135)
Q Consensus 88 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~I~ 134 (135)
+.-|.|..|...+.+ .+....|..||+.|..+-+ +..|..|++++.
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 677899999888865 4666789999999976543 345888888764
No 171
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.38 E-value=8 Score=21.57 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=11.0
Q ss_pred eECCeeeccCchhhh
Q psy8111 46 LRDDHPYCIKCYESV 60 (135)
Q Consensus 46 ~~~~~~~C~~c~~~~ 60 (135)
.=+|.+||.+||...
T Consensus 24 gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 24 GCDGDLYCARCFREG 38 (67)
T ss_dssp TTTSEEECSSHHHHH
T ss_pred CCCCceehHHHHHHH
Confidence 345788999988764
No 172
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=37.01 E-value=21 Score=20.10 Aligned_cols=40 Identities=15% Similarity=0.399 Sum_probs=20.1
Q ss_pred ccccccccCCCCCeeeeCCcc-cCHHhHhhhcCCCcccCCCCCC
Q psy8111 92 SCSKCRQSLVDKQFGSKSEKI-YCGNCYDAQFASRCDGCSEIFK 134 (135)
Q Consensus 92 ~C~~C~~~l~~~~~~~~~~~~-~C~~c~~~~~~~~C~~C~~~I~ 134 (135)
.|..|...+.+. ....=|.. +|..|..+. ..|..|..+|.
T Consensus 20 ~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 60 (79)
T 2yho_A 20 LCMVCCEEEINS-TFCPCGHTVCCESCAAQL--QSCPVCRSRVE 60 (79)
T ss_dssp BCTTTSSSBCCE-EEETTCBCCBCHHHHTTC--SBCTTTCCBCC
T ss_pred EeEEeCcccCcE-EEECCCCHHHHHHHHHhc--CcCCCCCchhh
Confidence 344554433322 22223444 677776554 36777766653
No 173
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.74 E-value=24 Score=19.17 Aligned_cols=23 Identities=17% Similarity=0.629 Sum_probs=15.3
Q ss_pred Ccc-cCHHhHhhhcCCCcccCCCCCC
Q psy8111 110 EKI-YCGNCYDAQFASRCDGCSEIFK 134 (135)
Q Consensus 110 ~~~-~C~~c~~~~~~~~C~~C~~~I~ 134 (135)
+.. +|..|..+ ..+|..|.++|.
T Consensus 34 gH~~~C~~C~~~--~~~CP~CR~~i~ 57 (68)
T 2ea5_A 34 RHTCLCDGCVKY--FQQCPMCRQFVQ 57 (68)
T ss_dssp TBCCSCTTHHHH--CSSCTTTCCCCC
T ss_pred CChhhhHHHHhc--CCCCCCCCcchh
Confidence 444 77777764 367888877764
No 174
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.45 E-value=13 Score=15.07 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=7.8
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 667777766543
No 175
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=36.21 E-value=12 Score=21.74 Aligned_cols=17 Identities=35% Similarity=0.909 Sum_probs=10.3
Q ss_pred eeccccCCccCCCceEe
Q psy8111 30 FCCWQCDESLTGQRYVL 46 (135)
Q Consensus 30 f~C~~C~~~l~~~~~~~ 46 (135)
+.|..|...|++..|+.
T Consensus 16 l~CtlC~erLEdtHFVQ 32 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQ 32 (93)
T ss_dssp CCCSSSCSCCSSTTSEE
T ss_pred eEeecchhhhccCceee
Confidence 56666666666655544
No 176
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=35.77 E-value=15 Score=14.96 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=7.3
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 566677666543
No 177
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=34.77 E-value=51 Score=19.49 Aligned_cols=24 Identities=21% Similarity=0.607 Sum_probs=15.3
Q ss_pred CcccCHHhHh--h-hcCCCcccCCCCC
Q psy8111 110 EKIYCGNCYD--A-QFASRCDGCSEIF 133 (135)
Q Consensus 110 ~~~~C~~c~~--~-~~~~~C~~C~~~I 133 (135)
+-|+|+.||+ + .-...|.+|+...
T Consensus 42 ~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 42 GFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CChhhHHHHHHHHhccCccccccCCcc
Confidence 3467999985 2 2345788887543
No 178
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=33.66 E-value=17 Score=14.81 Aligned_cols=12 Identities=25% Similarity=0.775 Sum_probs=7.5
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 566777666543
No 179
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=33.41 E-value=18 Score=14.90 Aligned_cols=12 Identities=25% Similarity=0.838 Sum_probs=7.2
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 566666665543
No 180
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.00 E-value=32 Score=19.47 Aligned_cols=18 Identities=28% Similarity=0.907 Sum_probs=11.3
Q ss_pred cccccccc----------ccccccccCC
Q psy8111 84 KHWHEACF----------SCSKCRQSLV 101 (135)
Q Consensus 84 ~~~H~~Cf----------~C~~C~~~l~ 101 (135)
..||.+|. +|..|...+.
T Consensus 42 h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 42 HFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 56677665 4666666654
No 181
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=32.32 E-value=20 Score=14.57 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=7.4
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 566677666654
No 182
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.18 E-value=17 Score=14.72 Aligned_cols=12 Identities=17% Similarity=0.656 Sum_probs=7.7
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 667777666543
No 183
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.92 E-value=12 Score=21.75 Aligned_cols=42 Identities=21% Similarity=0.528 Sum_probs=26.3
Q ss_pred cccccccccCCCCCeee--eCCcccCHHhHhhhc----------CCCccc--CCCC
Q psy8111 91 FSCSKCRQSLVDKQFGS--KSEKIYCGNCYDAQF----------ASRCDG--CSEI 132 (135)
Q Consensus 91 f~C~~C~~~l~~~~~~~--~~~~~~C~~c~~~~~----------~~~C~~--C~~~ 132 (135)
+.|..|-..+....... .=|..||..|+.+.+ ..+|.. |...
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45777766665443333 248888998864432 247877 8776
No 184
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.87 E-value=21 Score=14.33 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=7.0
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 556666665543
No 185
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.44 E-value=18 Score=14.62 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=6.6
Q ss_pred eeccccCCccC
Q psy8111 30 FCCWQCDESLT 40 (135)
Q Consensus 30 f~C~~C~~~l~ 40 (135)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 56666666554
No 186
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.12 E-value=19 Score=20.97 Aligned_cols=42 Identities=14% Similarity=0.351 Sum_probs=28.8
Q ss_pred ccccccccccCCCCCeee-eCCcccCHHhHhhhc--------CCCccc--CCCC
Q psy8111 90 CFSCSKCRQSLVDKQFGS-KSEKIYCGNCYDAQF--------ASRCDG--CSEI 132 (135)
Q Consensus 90 Cf~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~--------~~~C~~--C~~~ 132 (135)
=|.|..|...+.+ .+.. ..|..||+.|..+.+ ...|.. |.+.
T Consensus 7 ~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3778888877765 4555 489999999975543 247877 6543
No 187
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.92 E-value=10 Score=15.23 Aligned_cols=12 Identities=17% Similarity=0.761 Sum_probs=7.5
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 566777666554
No 188
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=30.24 E-value=42 Score=18.60 Aligned_cols=23 Identities=0% Similarity=-0.334 Sum_probs=12.0
Q ss_pred ccCccccccceeeCC-----CcccCCCCe
Q psy8111 7 HQDKSFREDYNKLGG-----KDRGSGQHF 30 (135)
Q Consensus 7 ~C~~~i~~~~i~a~~-----~~~H~~~cf 30 (135)
.|+++-.+.+|.-.+ .-||.. |.
T Consensus 20 ~C~~~~~g~MI~CD~~~C~~~wfH~~-Cv 47 (71)
T 1wen_A 20 LCHQVSYGEMIGCDNPDCSIEWFHFA-CV 47 (71)
T ss_dssp TTCCCSCSSEECCSCSSCSCCCEETT-TT
T ss_pred ECCCCCCCCEeEeeCCCCCCccEecc-cC
Confidence 466655555544443 345666 53
No 189
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=30.06 E-value=9.3 Score=20.83 Aligned_cols=16 Identities=38% Similarity=0.771 Sum_probs=9.0
Q ss_pred ECCeeeccCchhhhcC
Q psy8111 47 RDDHPYCIKCYESVFA 62 (135)
Q Consensus 47 ~~~~~~C~~c~~~~~~ 62 (135)
+++...|+-|+...|+
T Consensus 6 ~~d~~~C~iC~KTKFA 21 (62)
T 2a20_A 6 KGDAPTCGICHKTKFA 21 (62)
T ss_dssp SSCCCCCSSSSCSCCC
T ss_pred cCCcchhhhhccceec
Confidence 3455566666665554
No 190
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=29.55 E-value=16 Score=21.84 Aligned_cols=36 Identities=25% Similarity=0.617 Sum_probs=23.9
Q ss_pred CcccCCCCeeccccCC-ccCCCceE--eECCeeeccCchhh
Q psy8111 22 KDRGSGQHFCCWQCDE-SLTGQRYV--LRDDHPYCIKCYES 59 (135)
Q Consensus 22 ~~~H~~~cf~C~~C~~-~l~~~~~~--~~~~~~~C~~c~~~ 59 (135)
..+|+. ..|..|+. ++.+.+|. .=.+--+|..||..
T Consensus 26 ~~~H~g--v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 26 LDKHLG--IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp CSSCCC--CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred ccccCC--CCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 358887 89999996 67776443 22345567777664
No 191
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.20 E-value=20 Score=14.53 Aligned_cols=11 Identities=27% Similarity=0.758 Sum_probs=7.0
Q ss_pred eeccccCCccC
Q psy8111 30 FCCWQCDESLT 40 (135)
Q Consensus 30 f~C~~C~~~l~ 40 (135)
|.|..|++.+.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 56777766554
No 192
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=28.10 E-value=19 Score=19.30 Aligned_cols=23 Identities=0% Similarity=-0.334 Sum_probs=12.5
Q ss_pred ccCccccccceeeCC-----CcccCCCCe
Q psy8111 7 HQDKSFREDYNKLGG-----KDRGSGQHF 30 (135)
Q Consensus 7 ~C~~~i~~~~i~a~~-----~~~H~~~cf 30 (135)
.|+++-.+.+|.-.+ .-||.. |.
T Consensus 14 ~C~~~~~g~mi~CD~cdC~~~wfH~~-Cv 41 (60)
T 2vnf_A 14 LCHQVSYGEMIGCDNPDCSIEWFHFA-CV 41 (60)
T ss_dssp TTTEECCSEEEECSCTTCSSCEEETG-GG
T ss_pred ECCCcCCCCEEEeCCCCCCCceEehh-cC
Confidence 466665555554444 336666 54
No 193
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=27.75 E-value=32 Score=21.70 Aligned_cols=52 Identities=15% Similarity=0.393 Sum_probs=24.9
Q ss_pred CchhhcCCccccCcccceeCCccccc--cccccccccccCCCCCeeee--CCcccCHHhH
Q psy8111 63 NSCEECSKIIGIDSKDLSYKDKHWHE--ACFSCSKCRQSLVDKQFGSK--SEKIYCGNCY 118 (135)
Q Consensus 63 ~~C~~C~~~I~~~~~~~~~~~~~~H~--~Cf~C~~C~~~l~~~~~~~~--~~~~~C~~c~ 118 (135)
-.|.+|++.+.. ........|| .=..|..|...+....|... ...-||.-|-
T Consensus 9 ~~Ct~Cg~~~~~----~~~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~ 64 (129)
T 3ql9_A 9 VSCTACGQQVNH----FQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCA 64 (129)
T ss_dssp CBCTTTCCBCCC----CBTTTEEECTTTCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTC
T ss_pred eEeccCCCCCcc----cCCCccccCCCcCceeCHhHHhhhhccccccCCCCCCCcCeecC
Confidence 367777777631 1112234454 23346666665543333332 2445565554
No 194
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.62 E-value=17 Score=14.79 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=7.0
Q ss_pred eeccccCCccC
Q psy8111 30 FCCWQCDESLT 40 (135)
Q Consensus 30 f~C~~C~~~l~ 40 (135)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 66777766554
No 195
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=33.21 E-value=13 Score=15.31 Aligned_cols=12 Identities=17% Similarity=0.880 Sum_probs=8.0
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 667777776654
No 196
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.82 E-value=24 Score=15.14 Aligned_cols=13 Identities=15% Similarity=0.544 Sum_probs=9.4
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
-|.|..|++.+..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 4788888777654
No 197
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=25.77 E-value=25 Score=19.68 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=8.2
Q ss_pred eeccccCCccC
Q psy8111 30 FCCWQCDESLT 40 (135)
Q Consensus 30 f~C~~C~~~l~ 40 (135)
+.|..|+..++
T Consensus 29 Y~C~~CG~~~e 39 (70)
T 1twf_L 29 YICAECSSKLS 39 (70)
T ss_dssp EECSSSCCEEC
T ss_pred EECCCCCCcce
Confidence 78888877754
No 198
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=25.53 E-value=30 Score=18.41 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=17.0
Q ss_pred Ccc-cCHHhHhhhc--CCCcccCCCCCC
Q psy8111 110 EKI-YCGNCYDAQF--ASRCDGCSEIFK 134 (135)
Q Consensus 110 ~~~-~C~~c~~~~~--~~~C~~C~~~I~ 134 (135)
|.. +|..|..+.. ..+|..|.++|.
T Consensus 29 gH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 29 GHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp EEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 444 6888876543 357888888874
No 199
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=25.48 E-value=44 Score=18.17 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=17.3
Q ss_pred CeeccccCCccCCC-ceEeECC--eeecc
Q psy8111 29 HFCCWQCDESLTGQ-RYVLRDD--HPYCI 54 (135)
Q Consensus 29 cf~C~~C~~~l~~~-~~~~~~~--~~~C~ 54 (135)
=..|+.|+++|... ..|.+.| ++||.
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS 48 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCS 48 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESS
T ss_pred ccChhhccchhhcCceeeeecCchhheec
Confidence 36789999999765 4555655 45653
No 200
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.45 E-value=25 Score=15.19 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=9.1
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
=|.|..|++.+..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 4778888777654
No 201
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.83 E-value=29 Score=15.03 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=9.5
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4788888877754
No 202
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=24.81 E-value=26 Score=18.70 Aligned_cols=14 Identities=0% Similarity=-0.206 Sum_probs=6.9
Q ss_pred cccccCccccccce
Q psy8111 4 AVKHQDKSFREDYN 17 (135)
Q Consensus 4 ~C~~C~~~i~~~~i 17 (135)
.|..||.++.++.|
T Consensus 32 vC~~CGlVl~e~~i 45 (58)
T 1dl6_A 32 ICPECGLVVGDRVI 45 (58)
T ss_dssp ECTTTCCEECCSCC
T ss_pred EeCCCCCEEecccc
Confidence 35555555554443
No 203
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.48 E-value=16 Score=15.03 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=7.5
Q ss_pred eeccccCCccCC
Q psy8111 30 FCCWQCDESLTG 41 (135)
Q Consensus 30 f~C~~C~~~l~~ 41 (135)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 566777666543
No 204
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.46 E-value=56 Score=18.15 Aligned_cols=20 Identities=30% Similarity=0.873 Sum_probs=12.2
Q ss_pred CCcccccccc--------ccccccccCC
Q psy8111 82 KDKHWHEACF--------SCSKCRQSLV 101 (135)
Q Consensus 82 ~~~~~H~~Cf--------~C~~C~~~l~ 101 (135)
=+..||..|+ +|..|.+++.
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 3556666665 3667766654
No 205
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.45 E-value=58 Score=19.10 Aligned_cols=6 Identities=33% Similarity=1.287 Sum_probs=2.2
Q ss_pred eeccCc
Q psy8111 51 PYCIKC 56 (135)
Q Consensus 51 ~~C~~c 56 (135)
.||..|
T Consensus 77 W~Cp~C 82 (91)
T 1weu_A 77 WFCPRC 82 (91)
T ss_dssp CCCTTT
T ss_pred EECcCc
Confidence 333333
No 206
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.10 E-value=30 Score=14.95 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=6.9
Q ss_pred eeccccCCccC
Q psy8111 30 FCCWQCDESLT 40 (135)
Q Consensus 30 f~C~~C~~~l~ 40 (135)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~F~ 13 (33)
T 1rim_A 3 FACPECPKRFM 13 (33)
T ss_dssp CCCSSSCCCCS
T ss_pred ccCCCCCchhC
Confidence 56666766654
No 207
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.96 E-value=31 Score=15.16 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=9.8
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 5888888877654
No 208
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.74 E-value=31 Score=15.10 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=9.7
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
-|.|..|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4888888877654
No 209
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.69 E-value=29 Score=15.09 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=9.7
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
=|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4888888877654
No 210
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=22.78 E-value=22 Score=28.74 Aligned_cols=82 Identities=16% Similarity=0.295 Sum_probs=48.3
Q ss_pred ccccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccccCcccceeC
Q psy8111 3 SAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYK 82 (135)
Q Consensus 3 ~~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~ 82 (135)
.+|..|-+.|.+. .++.|+-- --.|..|+-. |......||=..--....-+.|..|.+.- -...
T Consensus 18 a~C~~Cl~e~~dp----~~Rry~Yp-F~nCt~CGPR-----~tii~~lPYDR~~TsM~~F~mC~~C~~EY------~dp~ 81 (657)
T 3ttc_A 18 ATCPACLAEMNTP----GERRYRYP-FINCTHCGPR-----FTIIRAMPYDRPFTVMAAFPLCPACDKEY------RDPL 81 (657)
T ss_dssp CCCHHHHHHHTST----TSTTTTCT-TCCBTTBBCS-----GGGBSSSSCSGGGBGGGGSCCCHHHHHHH------HCTT
T ss_pred hhhHHHHHHhcCC----CCcccCCc-cccCcCCCch-----HHhcccCCCCCCCCcccCCCCChHHHHHh------CCCC
Confidence 3566666665543 46788877 7889999654 33444444311111111114566665433 3345
Q ss_pred CccccccccccccccccC
Q psy8111 83 DKHWHEACFSCSKCRQSL 100 (135)
Q Consensus 83 ~~~~H~~Cf~C~~C~~~l 100 (135)
++.||.+=-.|..|+-.|
T Consensus 82 dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 82 DRRFHAQPVACPECGPYL 99 (657)
T ss_dssp STTTTCTTCCCTTTSCCE
T ss_pred CCcCcCCCCcCcccCccc
Confidence 788998878888998877
No 211
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.58 E-value=27 Score=15.52 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=9.3
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
=|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 4888888776643
No 212
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.53 E-value=29 Score=20.32 Aligned_cols=12 Identities=17% Similarity=0.636 Sum_probs=7.4
Q ss_pred eCCccccccccc
Q psy8111 81 YKDKHWHEACFS 92 (135)
Q Consensus 81 ~~~~~~H~~Cf~ 92 (135)
+=++.||..|++
T Consensus 34 vC~RvfH~~CL~ 45 (89)
T 1wil_A 34 VCTRVFHDGCLR 45 (89)
T ss_dssp SSSSCCCHHHHH
T ss_pred cccccccHhhcc
Confidence 345666766665
No 213
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=22.28 E-value=26 Score=16.48 Aligned_cols=14 Identities=21% Similarity=0.738 Sum_probs=10.3
Q ss_pred CeeccccCCccCCC
Q psy8111 29 HFCCWQCDESLTGQ 42 (135)
Q Consensus 29 cf~C~~C~~~l~~~ 42 (135)
-|+|..|++.+...
T Consensus 8 p~~C~~CgK~F~~~ 21 (36)
T 1fv5_A 8 RFMCLPCGIAFSSP 21 (36)
T ss_dssp CCEETTTTEECSCH
T ss_pred CeECCCCCCccCCH
Confidence 47888888877643
No 214
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.17 E-value=32 Score=14.87 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=9.5
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elt_A 9 PYKCPQCSYASAI 21 (36)
T ss_dssp SEECSSSSCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4888888877653
No 215
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.74 E-value=46 Score=18.32 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=7.4
Q ss_pred CCchhhcCCcc
Q psy8111 62 ANSCEECSKII 72 (135)
Q Consensus 62 ~~~C~~C~~~I 72 (135)
..+|..|++.+
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wfh_A 15 PNRCTVCRKRV 25 (64)
T ss_dssp CCCCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 45777777766
No 216
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=21.73 E-value=33 Score=19.25 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=8.6
Q ss_pred ccccccccCCC
Q psy8111 92 SCSKCRQSLVD 102 (135)
Q Consensus 92 ~C~~C~~~l~~ 102 (135)
+|..||+.+++
T Consensus 6 RCFTCGkvi~~ 16 (70)
T 1twf_J 6 RCFSCGKVVGD 16 (70)
T ss_dssp BCTTTCCBCTT
T ss_pred ecCCCCCChHH
Confidence 57778888877
No 217
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=21.49 E-value=27 Score=28.78 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=45.3
Q ss_pred cccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccccCcccceeCC
Q psy8111 4 AVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKD 83 (135)
Q Consensus 4 ~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~ 83 (135)
+|..|-+.|.+. .++.|+-- --.|..|+-.+ ......||=..--.-..-+.|..|.+.- -...+
T Consensus 108 ~C~~Cl~e~~dp----~~rry~yp-F~nCt~CGPR~-----tii~~lPYDR~~TsM~~F~mC~~C~~EY------~dp~d 171 (772)
T 4g9i_A 108 ICDDCLRELFDP----TNKRYMYP-FIVCTNCGPRF-----TIIEDLPYDRENTTMKEFPMCDFCRSEY------EDPLN 171 (772)
T ss_dssp CCHHHHHHHSST----TSTTTTCT-TCCCTTSSCCG-----GGCCSSSCCGGGSGGGGSCCCHHHHHHH------HCSSS
T ss_pred hhHHHHHHhcCC----CCCccCCc-cccCCCCCchh-----hhhhcCCCCCCCCcCCCCCCChhHHHHh------CCCCC
Confidence 455555555442 45777766 67788885443 3333444311111111114566664433 34467
Q ss_pred ccccccccccccccccC
Q psy8111 84 KHWHEACFSCSKCRQSL 100 (135)
Q Consensus 84 ~~~H~~Cf~C~~C~~~l 100 (135)
+.||.+=-.|..|+-.|
T Consensus 172 RRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 172 RRYHAEPTACPVCGPSY 188 (772)
T ss_dssp TTTTCTTCCCTTTSCCE
T ss_pred CCCcCCCCCCccCCceE
Confidence 88998777888898776
No 218
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.48 E-value=33 Score=14.93 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=9.2
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2els_A 9 IFTCEYCNKVFKF 21 (36)
T ss_dssp CEECTTTCCEESS
T ss_pred CEECCCCCceeCC
Confidence 4788888777653
No 219
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.98 E-value=34 Score=14.83 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=9.3
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elv_A 9 LYDCHICERKFKN 21 (36)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 4788888776653
No 220
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.58 E-value=32 Score=17.39 Aligned_cols=8 Identities=25% Similarity=0.725 Sum_probs=3.9
Q ss_pred eeccccCC
Q psy8111 30 FCCWQCDE 37 (135)
Q Consensus 30 f~C~~C~~ 37 (135)
+.|..|+.
T Consensus 6 ~~CP~C~~ 13 (50)
T 1pft_A 6 KVCPACES 13 (50)
T ss_dssp CSCTTTSC
T ss_pred EeCcCCCC
Confidence 34555544
No 221
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.51 E-value=28 Score=28.67 Aligned_cols=81 Identities=19% Similarity=0.381 Sum_probs=44.7
Q ss_pred cccccCccccccceeeCCCcccCCCCeeccccCCccCCCceEeECCeeeccCchhhhcCCchhhcCCccccCcccceeCC
Q psy8111 4 AVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKD 83 (135)
Q Consensus 4 ~C~~C~~~i~~~~i~a~~~~~H~~~cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~ 83 (135)
+|..|-+.|.+. .++.|+-- --.|..|+-. |......||=..--.-..-+.|..|.+.- -...+
T Consensus 113 ~C~~Cl~e~~dp----~~Rry~yp-F~nCt~CGPR-----~tii~~lPYDR~~TsM~~F~mC~~C~~EY------~dp~~ 176 (761)
T 3vth_A 113 VCEDCLRELKDP----KDRRYRYP-FINCTNCGPR-----FSIIEDIPYDRAKTSMKVFPMCEKCSREY------HDPHD 176 (761)
T ss_dssp CCHHHHHHHTCT----TSTTTTCT-TCCBTTBBCS-----GGGBCSSSCCGGGBGGGGSCCCHHHHHHH------TCTTS
T ss_pred ccHHHHHHhcCC----CccccCCC-cccCCCCCcc-----hhhhccCCCCCCCCccccCCCCHHHHHHh------cCccc
Confidence 455555555442 46777777 6788888643 33333344311111111114566665433 23457
Q ss_pred ccccccccccccccccC
Q psy8111 84 KHWHEACFSCSKCRQSL 100 (135)
Q Consensus 84 ~~~H~~Cf~C~~C~~~l 100 (135)
+.||.+=-.|..|+-.|
T Consensus 177 RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 177 RRFHAQPVACFDCGPSL 193 (761)
T ss_dssp TTTTCTTCCCTTTSCCE
T ss_pred ccccCCCCcCCccCCee
Confidence 88997777788888776
No 222
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.43 E-value=39 Score=15.25 Aligned_cols=13 Identities=23% Similarity=0.882 Sum_probs=9.8
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
=|.|..|++.+..
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2yte_A 10 PYSCAECKETFSD 22 (42)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCccCC
Confidence 4888888887754
No 223
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.39 E-value=35 Score=15.25 Aligned_cols=13 Identities=15% Similarity=0.636 Sum_probs=9.4
Q ss_pred CeeccccCCccCC
Q psy8111 29 HFCCWQCDESLTG 41 (135)
Q Consensus 29 cf~C~~C~~~l~~ 41 (135)
-|.|..|++.+..
T Consensus 6 ~~~C~~C~k~f~~ 18 (39)
T 1njq_A 6 SYTCSFCKREFRS 18 (39)
T ss_dssp SEECTTTCCEESS
T ss_pred ceECCCCCcccCC
Confidence 4788888777654
Done!