RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8111
(135 letters)
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 104 bits (261), Expect = 4e-30
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWH 87
+HFCC+ CD L G+ YV+ +D P C CY A C+ C I + + ++Y + WH
Sbjct: 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWH 88
Query: 88 EA--CFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123
+ CF CS C + L+ ++F ++C + +
Sbjct: 89 ASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS 126
Score = 62.8 bits (153), Expect = 7e-14
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFAS 124
C C ++I ++ ++++WH F C C L + + ++K C CY A
Sbjct: 6 CAGCDELI-FSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV 64
Query: 125 RCDGCSE 131
C GC
Sbjct: 65 VCQGCHN 71
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 91.8 bits (228), Expect = 1e-25
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 49 DHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSK 108
CY++ FAN+C EC ++IG DS++L Y+D+H+HE CF C +C++SL D+ F +
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQ 61
Query: 109 SEKIYCGNCYDAQFASRCD 127
++ C +CY + F+S
Sbjct: 62 DSELLCNDCYCSAFSSGPS 80
Score = 39.4 bits (92), Expect = 2e-05
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
F C +C SL + + +D C CY S F++
Sbjct: 42 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGP 79
Score = 28.2 bits (63), Expect = 0.25
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 110 EKIYCGNCYDAQFASRCDGCSE 131
G CYD FA+ C C +
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQ 23
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 92.2 bits (229), Expect = 8e-25
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWH 87
+ C C L + + R + YC + F C C I +D +H
Sbjct: 32 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYH 90
Query: 88 EACFSCSKCRQSLV--DKQFGSKSEKIYCGNCYDAQFASRCDGCSE 131
CF+C C++ L D+ + + ++ C Y+ G
Sbjct: 91 LHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGG 136
Score = 64.5 bits (157), Expect = 4e-14
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFAS 124
C C + I +D L D+HWH C CS C L ++ F S+ E +YC + + +F +
Sbjct: 9 CAGCDQHI-LDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGT 66
Query: 125 RCDGCSEIFKA 135
+C C
Sbjct: 67 KCAACQLGIPP 77
Score = 53.3 bits (128), Expect = 5e-10
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 4/72 (5%)
Query: 28 QHFCCWQCDESLTG--QRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKH 85
F C C L + Y++ D C YE+ G +
Sbjct: 92 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGG--GTPMVAASPE 149
Query: 86 WHEACFSCSKCR 97
H+ +
Sbjct: 150 RHDGGLQANPVE 161
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 86.7 bits (215), Expect = 2e-23
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCY 118
S ++ C EC K IG DSK++ YK++ WH+ CF C+KC L ++ F +K KI C C
Sbjct: 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCT 61
Query: 119 DAQFASRCDGCSEIFKA 135
+ + +C GC + A
Sbjct: 62 TREDSPKCKGCFKAIVA 78
Score = 69.4 bits (170), Expect = 1e-16
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWH 87
F C +C L + +V +D+ C KC + C+ C K I +++ YK WH
Sbjct: 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWH 91
Query: 88 EACFSCSKC 96
+ CFS
Sbjct: 92 KDCFSGPSS 100
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 78.6 bits (194), Expect = 2e-20
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 50 HPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKS 109
KC + C+ C K I +++ YK WH+ CF+CS C+Q + F K
Sbjct: 3 SGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKG 62
Query: 110 EKIYCGNCYDAQFASRC 126
E YC C++ +FAS
Sbjct: 63 EDFYCVTCHETKFASGP 79
Score = 45.4 bits (108), Expect = 1e-07
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
F C C + + + + + YC+ C+E+ FA+
Sbjct: 42 DCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGP 79
Score = 30.8 bits (70), Expect = 0.031
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 111 KIYCGNCYDAQFASRCDGCSEIFKA 135
G C + + +C GC + A
Sbjct: 3 SGSSGKCTTREDSPKCKGCFKAIVA 27
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 78.0 bits (192), Expect = 3e-19
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWH 87
+ C C L + + R + YC + F C C I +D +H
Sbjct: 86 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYH 144
Query: 88 EACFSCSKCRQSLV--DKQFGSKSEKIYCGNCYDAQ 121
CF+C C++ L D+ + + ++ C Y+
Sbjct: 145 LHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180
Score = 76.5 bits (188), Expect = 1e-18
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 2/108 (1%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWH 87
+ + + + + C C + I +D L D+HWH
Sbjct: 26 RLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHI-LDRFILKALDRHWH 84
Query: 88 EACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCSEIFKA 135
C CS C L ++ F S+ E +YC + + +F ++C C
Sbjct: 85 SKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPP 131
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 72.0 bits (177), Expect = 4e-18
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 49 DHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSK 108
CYE+ FA C CSK + ++Y+D+ WH C C+ C+ L +QF S+
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTL--TQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSR 59
Query: 109 SEKIYCGNCYDAQFASRC 126
E YC C+ FAS
Sbjct: 60 DEDPYCVACFGELFASGP 77
Score = 48.5 bits (116), Expect = 7e-09
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
+ C C L GQ++ RD+ PYC+ C+ +FA+
Sbjct: 40 ECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGP 77
Score = 28.8 bits (65), Expect = 0.18
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 111 KIYCGNCYDAQFASRCDGCSEI 132
G CY+ +FA RC CS+
Sbjct: 3 SGSSGPCYENKFAPRCARCSKT 24
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 73.9 bits (181), Expect = 1e-17
Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 5/109 (4%)
Query: 28 QHFCCWQCDESLT--GQRYVLRDDHPYCIKCYESVFANS--CEECSKIIGIDSKDLSYKD 83
+ C C L G + C Y +F NS C C + I + +
Sbjct: 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQG 90
Query: 84 KHWHEACFSCSKCRQSLVD-KQFGSKSEKIYCGNCYDAQFASRCDGCSE 131
+H CF+CS CR LV +F + ++C + +
Sbjct: 91 NVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139
Score = 50.4 bits (120), Expect = 8e-09
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQ--FGSKSEKIYCGN 116
S+ C C I D L D +WH C CS C+ L D +KS I C N
Sbjct: 2 SLSWKRCAGCGGKI-ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 117 CYDAQF--ASRCDGCSEIFKA 135
Y F + C C + A
Sbjct: 61 DYIRLFGNSGACSACGQSIPA 81
Score = 41.2 bits (96), Expect = 2e-05
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 28 QHFCCWQCDESL-TGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHW 86
+ F C C L G R+ + +C + N G
Sbjct: 96 KCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSG-------- 147
Query: 87 HEACFSCSKCRQSLVDKQFGSKSEKIYC 114
+L+ +FG + E++
Sbjct: 148 ---GDVMVVGEPTLMGGEFGDEDERLIT 172
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 69.7 bits (171), Expect = 4e-17
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCY 118
S ++ C+EC K I ++ + YK WHE CF C +C+Q + K F K + +C CY
Sbjct: 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61
Query: 119 DAQFASRC 126
+ Q AS
Sbjct: 62 EKQHASGP 69
Score = 46.6 bits (111), Expect = 3e-08
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
F C +C + + + ++ +D+ +C+ CYE A+
Sbjct: 32 TCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGP 69
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 69.3 bits (170), Expect = 5e-17
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCY 118
S ++ C C + + S+ L Y + WHE CF CS C Q L + F YC CY
Sbjct: 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCY 61
Query: 119 DAQFASRC 126
+ +FAS
Sbjct: 62 ENKFASGP 69
Score = 47.0 bits (112), Expect = 2e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
F C C++ L + +V YC+ CYE+ FA+
Sbjct: 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGP 69
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 69.4 bits (170), Expect = 5e-17
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 50 HPYCIKCYESVFANSCEECSKII---GIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFG 106
CY++ A C C I G S ++Y+ + WH+ CF C KC +L +K+F
Sbjct: 3 SGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFV 62
Query: 107 SKSEKIYCGNCY 118
E++YC +C
Sbjct: 63 FHQEQVYCPDCA 74
Score = 37.8 bits (88), Expect = 7e-05
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYE 58
F C +C +L +R+V + YC C +
Sbjct: 45 YCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 75
Score = 29.4 bits (66), Expect = 0.11
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 110 EKIYCGNCYDAQFASRCDGCSE 131
G+CY A +C GC
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKN 23
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 69.3 bits (170), Expect = 6e-17
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 50 HPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKS 109
K + ++F+ C C++ + LS D WH CF C C S F
Sbjct: 3 SGSSGKDFLAMFSPKCGGCNRPV--LENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELD 60
Query: 110 EKIYCGNCYDAQFASRC 126
+ +C Y + S
Sbjct: 61 GRPFCELHYHHRRGSGP 77
Score = 42.7 bits (101), Expect = 1e-06
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
+ F C C S + + D P+C Y +
Sbjct: 40 ECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGP 77
Score = 27.3 bits (61), Expect = 0.53
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 111 KIYCGNCYDAQFASRCDGCSE 131
G + A F+ +C GC+
Sbjct: 3 SGSSGKDFLAMFSPKCGGCNR 23
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 68.0 bits (166), Expect = 2e-16
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 61 FANSCEECSKIIGIDSKDLSYKDKHWH--EACFSCSKCRQSLVDKQFGSKSEKIYCGNCY 118
A C+ C I + + ++Y + WH CF CS C + L+ ++F ++C
Sbjct: 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 60
Query: 119 DAQFA 123
+ +
Sbjct: 61 KKRMS 65
Score = 27.9 bits (62), Expect = 0.28
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 30 FCCWQCDESLTGQRYVLRDDHPYCIKC 56
F C C + L GQ+++ + +C
Sbjct: 33 FLCSCCSKCLIGQKFMPVEGMVFCSVE 59
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 68.1 bits (166), Expect = 2e-15
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 1/111 (0%)
Query: 21 GKDRGSGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLS 80
G G+ + + + ++ C C + + ++ +
Sbjct: 74 GMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAV-YAAEKVI 132
Query: 81 YKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCSE 131
K WH++CF C+KC +SL K +IYC CY F + G +
Sbjct: 133 GAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQ 183
Score = 56.9 bits (137), Expect = 3e-11
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQ 121
C C K + ++++ + +H++CF C C+++L ++IYC +CY +
Sbjct: 7 GKKCGVCQKAVYF-AEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKK 65
Query: 122 FASRCDGC 129
+ + G
Sbjct: 66 YGPKGKGK 73
Score = 47.3 bits (112), Expect = 1e-07
Identities = 16/104 (15%), Positives = 24/104 (23%), Gaps = 13/104 (12%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWH 87
F C C ++L + D YC CY + + G S D +
Sbjct: 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKY 92
Query: 88 EACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCSE 131
E S + C C +
Sbjct: 93 EEGQSHRPTN-------------PNASRMAQKVGGSDGCPRCGQ 123
Score = 41.2 bits (96), Expect = 2e-05
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIG 73
F C +C +SL +D YC CY F + G
Sbjct: 141 SCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 63.6 bits (155), Expect = 7e-15
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCY 118
S ++ C +C+K I S ++Y+D+ WH CF C C + L ++F + ++ YC +CY
Sbjct: 2 SSGSSGCVKCNKAIT--SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59
Query: 119 DAQFASRCDG 128
+ G
Sbjct: 60 KNFVSGPSSG 69
Score = 47.0 bits (112), Expect = 2e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
F C C + L GQR+ +D YC+ CY++ +
Sbjct: 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 65.2 bits (159), Expect = 8e-15
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 28 QHFCCWQCDESLT--GQRYVLRDDHPYCIKCYESVFA--NSCEECSKIIGIDSKDLSYKD 83
C C L G+R + C + Y +F C C K I + KD
Sbjct: 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKD 87
Query: 84 KHWHEACFSCSKCRQSLVD-KQFGSKSEKIYCGNCY 118
K +H CF C+ C++ ++ + I C
Sbjct: 88 KVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDI 123
Score = 49.0 bits (117), Expect = 1e-08
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVD--KQFGSKSEKIYCGNCYDAQF 122
C C + IG D L D++WHE C SC C L + ++ K + C Y F
Sbjct: 5 CGGCQQNIG-DRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63
Query: 123 ASR--CDGCSEIFKA 135
C C + +A
Sbjct: 64 GQDGLCASCDKRIRA 78
Score = 33.6 bits (77), Expect = 0.006
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 28 QHFCCWQCDESL-TGQRYVLRDDHPYCIKCYE 58
+ F C C + G RY+L + C +
Sbjct: 93 ECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 124
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 63.3 bits (154), Expect = 1e-14
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 59 SVFANSCEECSKIIG--IDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGN 116
S ++ C CSK I +K + ++D WH CF+C KC SLV K F +++++I+C
Sbjct: 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQK 61
Query: 117 CYDAQFASRCDGCS 130
C S
Sbjct: 62 CGSGMDTDISGPSS 75
Score = 39.1 bits (91), Expect = 2e-05
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECS 69
+ F C +C SL G+ ++ ++ +C KC + + S
Sbjct: 34 ECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 62.4 bits (152), Expect = 3e-14
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCY 118
S ++ C +C K I + ++Y+++ WH+ CF C+ CR+ L ++F ++ + YC NC+
Sbjct: 2 SSGSSGCVQCKKPIT--TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCF 59
Query: 119 DAQFASRC 126
+AS
Sbjct: 60 CDLYASGP 67
Score = 47.3 bits (113), Expect = 2e-08
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
+ F C C + L+GQR+ RDD YC+ C+ ++A+
Sbjct: 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 61.8 bits (150), Expect = 4e-14
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 59 SVFANSCEECSKII--GIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGN 116
S ++ C C+ I +K +S++++ WH CF+C KC SLV + F ++ + I C +
Sbjct: 2 SSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPD 61
Query: 117 CYDAQFASRC 126
C
Sbjct: 62 CGKDISGPSS 71
Score = 40.6 bits (95), Expect = 6e-06
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
F C +C SL G+ ++ D C C + + S
Sbjct: 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 61.6 bits (150), Expect = 6e-14
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 53 CIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKI 112
++ + +CE C K ++ + +HE CF C++C Q + F +
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK 61
Query: 113 YCGNCYDAQFA 123
YC + + FA
Sbjct: 62 YCEHDFQMLFA 72
Score = 39.3 bits (92), Expect = 2e-05
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62
Q F C QC + + + YC ++ +FA
Sbjct: 38 QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 60.5 bits (147), Expect = 1e-13
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQ 121
++ C C + + D + D+ +H CF CS CR L + F + + YC CY A
Sbjct: 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVAT 64
Query: 122 FASRCDGC 129
Sbjct: 65 LE-SGPSS 71
Score = 41.7 bits (98), Expect = 2e-06
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEEC 68
F C C L GQ + + YC CY + S
Sbjct: 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 59.3 bits (144), Expect = 4e-13
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 56 CYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCG 115
++ + +CE C K ++ + +HE CF C++C Q + F + YC
Sbjct: 5 YFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE 64
Query: 116 NCYDAQFA 123
+ + FA
Sbjct: 65 HDFQMLFA 72
Score = 38.9 bits (91), Expect = 3e-05
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62
Q F C QC + + + YC ++ +FA
Sbjct: 38 QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 56.7 bits (137), Expect = 6e-12
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 49 DHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSK 108
K Y F C CS + + + +H CF+C C+ + D +
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSL--LMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYAL 59
Query: 109 SE--KIYCGNCYDAQFASRCDG 128
+ +YCG C++ + G
Sbjct: 60 VQHATLYCGKCHNEVVSGPSSG 81
Score = 31.7 bits (72), Expect = 0.016
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 28 QHFCCWQCDESL-TGQRYVLRDDH-PYCIKCYESVFANSCE 66
+ F C C + G Y L YC KC+ V +
Sbjct: 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80
Score = 27.8 bits (62), Expect = 0.46
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 110 EKIYCGNCYDAQFASRCDGCSE 131
G Y +F C GCS
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSL 23
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 56.3 bits (136), Expect = 7e-12
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 55 KCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYC 114
+ C++C GI + +D+H H C+ C+ C +L K ++IYC
Sbjct: 8 SIGNAQKLPMCDKCGT--GIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYC 65
Query: 115 GNCYDAQFASRCDG 128
+ + G
Sbjct: 66 EKHARERVSGPSSG 79
Score = 38.6 bits (90), Expect = 5e-05
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
+ + C C +L + + +D YC K +
Sbjct: 40 ECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 55.9 bits (135), Expect = 9e-12
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 55 KCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYC 114
K + + C C + I + L DK WH +CF C C L + SK YC
Sbjct: 8 KPIKIRGPSHCAGCKEEIK-HGQSLLALDKQWHVSCFKCQTCSVILTGEYI-SKDGVPYC 65
Query: 115 GNCYDAQFASRC 126
+ Y AQF S
Sbjct: 66 ESDYHAQFGSGP 77
Score = 37.4 bits (87), Expect = 1e-04
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
F C C LTG Y+ +D PYC Y + F +
Sbjct: 41 SCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGP 77
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 55.5 bits (134), Expect = 2e-11
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 47 RDDHPYCIKCY-ESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQF 105
+D + C C+++I L K WH F+C+ C+ ++ F
Sbjct: 9 QDTLVQRAEHIPAGKRTPMCAHCNQVI--RGPFLVALGKSWHPEEFNCAHCKNTMAYIGF 66
Query: 106 GSKSEKIYCGNCYDAQFASRC 126
+ +YC CY+ FAS
Sbjct: 67 VEEKGALYCELCYEKFFASGP 87
Score = 48.6 bits (116), Expect = 7e-09
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
+ F C C ++ +V YC CYE FA+
Sbjct: 50 EEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 55.1 bits (133), Expect = 2e-11
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQ 121
N C C + + + + + +H CF C CR++L ++YC +CY +
Sbjct: 7 GNKCGACGRTVYHAEE-VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKK 65
Query: 122 FASRCDGCSE 131
+ + G +
Sbjct: 66 YGPKGYGYGQ 75
Score = 36.6 bits (85), Expect = 2e-04
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIG 73
F C C ++L + D YC CY + + G
Sbjct: 33 CCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAG 78
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 55.2 bits (133), Expect = 2e-11
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFAS 124
C++C GI + +DK+ H CF C+ C +L K + ++YC A+ +
Sbjct: 28 CDKCGS--GIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSG 85
Query: 125 RCDG 128
G
Sbjct: 86 PSSG 89
Score = 40.5 bits (95), Expect = 9e-06
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
+ F C C+ +L + Y + YC + +
Sbjct: 50 ECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 53.4 bits (129), Expect = 6e-11
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCY 118
S+ C C + I + + ++ K WH F C+KC + + + + YC Y
Sbjct: 2 SMGVPICGACRRPI--EGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59
Query: 119 DAQFAS 124
+ F
Sbjct: 60 NQLFGD 65
Score = 47.3 bits (113), Expect = 1e-08
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFAN 63
+HF C +C++ G R+ R YC Y +F +
Sbjct: 30 EHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 52.4 bits (126), Expect = 2e-10
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCY 118
S ++ C +C + I + + + WH CF C C++ L D F + + C C+
Sbjct: 2 SSGSSGCHQCGEFII--GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCH 59
Query: 119 DAQFASRC 126
+ + AS
Sbjct: 60 NREKASGP 67
Score = 42.4 bits (100), Expect = 1e-06
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEE 67
+ F C C E L +V C C+ A+
Sbjct: 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPSS 69
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 51.2 bits (123), Expect = 6e-10
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 56 CYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFG-SKSEKIYC 114
CY + C CS+ I + L K +H CF+C C + L F + +I+C
Sbjct: 10 CYVA-TLEKCATCSQPIL--DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHC 66
Query: 115 GNCYDAQFASRC 126
+ +FAS
Sbjct: 67 IEDFHRKFASGP 78
Score = 36.2 bits (84), Expect = 3e-04
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 28 QHFCCWQCDESLTGQRYVL-RDDHPYCIKCYESVFANSC 65
F C C L G + + +CI+ + FA+
Sbjct: 40 GCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 50.9 bits (121), Expect = 2e-09
Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWH 87
Q+ ++ G + L + C C I D L D +WH
Sbjct: 27 QYKMDVTVIDTKDGSQSKLGGGGSGGHMGSGGLSWKRCAGCGGKI-ADRFLLYAMDSYWH 85
Query: 88 EACFSCSKCRQSLVDKQFG--SKSEKIYCGNCYDAQFA 123
C CS C+ L D +KS I C N Y F
Sbjct: 86 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 49.0 bits (117), Expect = 5e-09
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 55 KCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQ-FGSKSEKIY 113
Y+ ++ C C + I + + +S K +H CF C+ CR ++
Sbjct: 8 LDYQRLYGTRCFSCDQFI--EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECM 65
Query: 114 CGNCYDAQFASR 125
C C S
Sbjct: 66 CQKCSLPVSVSG 77
Score = 32.8 bits (75), Expect = 0.006
Identities = 9/38 (23%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 28 QHFCCWQCDESLT-GQRYVLRDDHPYCIKCYESVFANS 64
F C C G R C KC V +
Sbjct: 40 DCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 48.5 bits (116), Expect = 7e-09
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYC-GNCYDAQFA 123
C +C K + + ++ K WH C C KC ++L K YC CY A F
Sbjct: 3 CPKCDKEVYFAER-VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 124 SRCDGC 129
+ G
Sbjct: 62 PKGFGR 67
Score = 35.8 bits (83), Expect = 4e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIK-CYESVFA 62
C +C ++LT + + PYC CY ++F
Sbjct: 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 47.4 bits (112), Expect = 4e-08
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 57 YESVFANS--CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSL-VDKQFGSKSEKIY 113
Y +F C C K I + KDK +H CF C+ C++ V ++ + I
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIV 60
Query: 114 CGNCYDAQFASRCDGCS 130
C
Sbjct: 61 CEQDIYEWTKINGGSGG 77
Score = 34.3 bits (78), Expect = 0.004
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 28 QHFCCWQCDESL-TGQRYVLRDDHPYCIKCYESVFANSCEECS 69
+ F C C + G RY+L + C + +
Sbjct: 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGG 77
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 46.0 bits (109), Expect = 7e-08
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFAS 124
C EC K + + L + +H +CF CS C L + S +IYC ++ F S
Sbjct: 18 CVECQKTVYPMER-LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKS 76
Query: 125 RCDGCS 130
+ +
Sbjct: 77 KGNYDE 82
Score = 33.7 bits (77), Expect = 0.004
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECS 69
F C C+ L+ Y YC + +F +
Sbjct: 41 SCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 82
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 44.7 bits (106), Expect = 2e-07
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 62 ANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGN-CYDA 120
A+ C +C K + K +S K WH+ C C +C ++L K +C CY
Sbjct: 9 ASKCPKCDKTVYFAEK-VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67
Query: 121 QFASRC 126
F S
Sbjct: 68 LFGSGP 73
Score = 39.3 bits (92), Expect = 2e-05
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 28 QHFCCWQCDESLTGQRYVLRDDHPYCIK-CYESVFAN 63
C +C ++LT + D P+C K CY ++F +
Sbjct: 35 FCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGS 71
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 43.2 bits (102), Expect = 6e-07
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFAS 124
C++C II D + L +K+ +H F+C+ C + L ++YC C+D S
Sbjct: 18 CQKCHAII--DEQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVS 74
Query: 125 RC 126
Sbjct: 75 GP 76
Score = 30.5 bits (69), Expect = 0.035
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 29 HFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSC 65
HF C C + LT YC+ C++ + +
Sbjct: 41 HFNCANCGKELTADARE-LKGELYCLPCHDKMGVSGP 76
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 44.2 bits (104), Expect = 7e-07
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQ--FGSKSEKIYCGN 116
S+ C C I D L D +WH C CS C+ L D +KS I C N
Sbjct: 2 SLSWKRCAGCGGKI-ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 117 CYDAQFASRCDGC 129
Y F + G
Sbjct: 61 DYIRLFGNSGAGG 73
Score = 36.1 bits (83), Expect = 8e-04
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 15/94 (15%)
Query: 28 QHFCCWQCDESLT--GQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKH 85
+ C C L G + C Y +F NS S
Sbjct: 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS---------- 80
Query: 86 WHEACFSCSKCRQSLVDKQFGSKSEKIYCGNCYD 119
+L+ +FG + E++
Sbjct: 81 -GGDVMVVG--EPTLMGGEFGDEDERLITRLENT 111
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 41.6 bits (97), Expect = 5e-06
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 64 SCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQ--FGSKSEKIYCGNCYDAQ 121
+C C + I D L D++WHE C SC C L + K + C Y
Sbjct: 5 TCGGCQQNI-GDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 63
Query: 122 FASRCDGC 129
S
Sbjct: 64 GGSGGHMG 71
Score = 37.0 bits (85), Expect = 3e-04
Identities = 8/77 (10%), Positives = 18/77 (23%), Gaps = 4/77 (5%)
Query: 28 QHFCCWQCDESLT--GQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSY--KD 83
C C L G+R + C + Y + + S + + + +
Sbjct: 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMVVGEPTLMGGE 88
Query: 84 KHWHEACFSCSKCRQSL 100
+
Sbjct: 89 FGDEDERLITRLENTQF 105
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 37.0 bits (85), Expect = 1e-04
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 59 SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQ-FGSKSEKIYCGNC 117
S ++ C+ C K I + L +KH+H +C C +C Q + + + I+ C
Sbjct: 2 SSGSSGCDSCEKYI--TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPAC 59
Query: 118 YDA 120
A
Sbjct: 60 RQA 62
Score = 25.4 bits (55), Expect = 2.8
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 25 GSGQHFCCWQCDESLTGQRYVLRDD--HPYCIKCYESVFANSCEECSKIIGIDSKDLSYK 82
GS C C++ +TG+ + HP C C C ++ +
Sbjct: 1 GSSGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVR---------CGQMFAEGEEMYLQG 51
Query: 83 DKHWHEACFSCSK 95
WH AC ++
Sbjct: 52 SSIWHPACRQAAR 64
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 32.2 bits (73), Expect = 0.011
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACFSCSKCRQSLVDKQFGSKSE--KIYCGNCYDAQF 122
C C + + + + L +H +CF C C +L + YC
Sbjct: 18 CALCGEHLYVLER-LCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTD 76
Query: 123 ASRCDG 128
+ G
Sbjct: 77 SGPSSG 82
Score = 24.5 bits (53), Expect = 7.6
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 28 QHFCCWQCDESLTGQRYVL--RDDHPYCIKCY 57
F C C+ +L Y D H YC++
Sbjct: 41 SCFRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Length = 336
Score = 30.4 bits (69), Expect = 0.14
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 1 MESAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRY 44
+ + + + +DY +L + G G + +C TGQ+
Sbjct: 15 LFQGPEPKKYAVTDDY-QLSKQVLGLGVNGKVLECFHRRTGQKC 57
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 30.1 bits (68), Expect = 0.20
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 2 ESAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRY---VLRD---------- 48
+S ++ + + +DY K+ + G G + Q T +++ +L+D
Sbjct: 49 KSGLQIKKNAIIDDY-KVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVEL 107
Query: 49 -----DHPYCIKCYESVFANSCEECSKI 71
P+ ++ + V+ N +
Sbjct: 108 HWRASQCPHIVRIVD-VYENLYAGRKCL 134
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens}
PDB: 3kga_A* 3m42_A*
Length = 299
Score = 30.0 bits (68), Expect = 0.22
Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 1 MESAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRY---VLRD--------- 48
++S ++ + + +DY K+ + G G + Q T +++ +L+D
Sbjct: 4 VKSGLQIKKNAIIDDY-KVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVE 62
Query: 49 ------DHPYCIKCYE 58
P+ ++ +
Sbjct: 63 LHWRASQCPHIVRIVD 78
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
2hw6_A
Length = 316
Score = 29.2 bits (66), Expect = 0.35
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 4 AVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRY 44
+ F + Y +L G G H C +T Q Y
Sbjct: 2 STDSFSGRFEDVY-QLQEDVLGEGAHARVQTCINLITSQEY 41
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
autoinhibitory, ATP-binding, nucleotide
phosphorylation, serine/threonine-protein kinase; 2.00A
{Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A
2wnt_A
Length = 342
Score = 27.6 bits (62), Expect = 1.1
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 1 MESAVKHQDKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRY 44
+ + F + Y +D G G + C +C T +
Sbjct: 9 IVQQLHRNSIQFTDGYEV--KEDIGVGSYSVCKRCIHKATNMEF 50
>2gvi_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1
g.39.1.18
Length = 204
Score = 27.4 bits (60), Expect = 1.2
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 32 CWQCDESLTGQRYVLRDDHPYCIKCYE 58
C C E L + P C Y
Sbjct: 175 CDVCGEYTYEADAKLLNGKPVCKPDYY 201
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK,
ATP-binding, metal-binding, NUCL binding,
serine/threonine-protein kinase, transferase; 2.00A
{Homo sapiens} PDB: 3kn5_A
Length = 325
Score = 27.3 bits (61), Expect = 1.9
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 23/73 (31%)
Query: 8 QDKSFREDYNKLGGKDR--GSGQHFCCWQCDESLTGQRY------------------VLR 47
+D F + Y L KD+ G G C +C + Q + L+
Sbjct: 2 KDSPFYQHY-DLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALK 60
Query: 48 --DDHPYCIKCYE 58
+ HP +K +E
Sbjct: 61 LCEGHPNIVKLHE 73
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 26.7 bits (59), Expect = 2.5
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 27 GQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANS 64
CCW C + V D C+ C + +
Sbjct: 499 PGDVCCWICIPCEPYEYLV---DEFTCMDCGPGQWPTA 533
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 26.0 bits (58), Expect = 4.3
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 25 GSGQHFCCWQCDESLTGQRYVLRDDHPYCIKC 56
G C Q + L V +D +C +
Sbjct: 109 GELLKVRCSQSGQVLDWTGDVTPEDKCHCCQF 140
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine
metabolism, salvage, hydrolase; HET: THU; 1.99A
{Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A*
1ux1_A*
Length = 136
Score = 25.5 bits (56), Expect = 5.3
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 88 EACFSCSKCRQSLVDKQFGSKSEKIYCGN 116
C CRQ + + +K + N
Sbjct: 81 GPVSPCGACRQVIS--ELCTKDVIVVLTN 107
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 25.7 bits (57), Expect = 6.2
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 20/69 (28%)
Query: 9 DKSFREDYNKLGGKDRGSGQHFCCWQCDESLTGQRYVL------RD------------DH 50
DK F D+ ++ + GSG ++ + G+ YV+ + DH
Sbjct: 6 DKRFGMDFKEI--ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDH 63
Query: 51 PYCIKCYES 59
+
Sbjct: 64 VNIVHYNGC 72
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 25.1 bits (55), Expect = 7.4
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 73 GIDSKDLSYKDK----HWHEACFSCSKCRQSLVD 102
G + SY +W + +C+ +QS ++
Sbjct: 2 GSEEIGWSYTGALNQKNWGKKYPTCNSPKQSPIN 35
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 25.1 bits (54), Expect = 9.0
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 74 IDSKDLSYKDKHWHEACFSCSK--CRQSLVDKQFGSKSEKIYCGNCYD 119
++ DL C + CR+ D + K +C C
Sbjct: 193 LNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNT 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 9.4
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 23/80 (28%)
Query: 55 KCYE--SVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSK------CRQSLVDKQFG 106
K ++ SVF S I + LS W + S + SLV+KQ
Sbjct: 373 KMFDRLSVFPPS-------AHIPTILLS---LIWFDVIKSDVMVVVNKLHKYSLVEKQ-- 420
Query: 107 SKSEKIYCGNCYDAQFASRC 126
K I +
Sbjct: 421 PKESTIS---IPSIYLELKV 437
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.455
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,003,945
Number of extensions: 106709
Number of successful extensions: 640
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 204
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)