RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8111
         (135 letters)



>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
          FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 48.9 bits (117), Expect = 6e-10
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 32 CWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62
          C  C + L+GQR+  RDD  YC+ C+  ++A
Sbjct: 2  CTACRKQLSGQRFTARDDFAYCLNCFCDLYA 32



 Score = 28.5 bits (64), Expect = 0.030
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 93  CSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123
           C+ CR+ L  ++F ++ +  YC NC+   +A
Sbjct: 2   CTACRKQLSGQRFTARDDFAYCLNCFCDLYA 32


>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
          FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 37

 Score = 49.0 bits (117), Expect = 6e-10
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 55 KCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACF 91
          KC     +  C+ C K I    +++ YK   WH+ CF
Sbjct: 1  KCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37



 Score = 24.7 bits (54), Expect = 0.87
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 117 CYDAQFASRCDGCSEIFKA 135
           C   + + +C GC +   A
Sbjct: 2   CTTREDSPKCKGCFKAIVA 20


>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1,
          FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 27

 Score = 36.9 bits (85), Expect = 3e-05
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACF 91
          C EC K IG DSK++ YK++ WH+ CF
Sbjct: 1  CVECRKPIGADSKEVHYKNRFWHDTCF 27


>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 35.9 bits (83), Expect = 5e-05
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 32 CWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62
          C  C   L GQ++  RD+ PYC+ C+  +FA
Sbjct: 2  CTGCQTPLAGQQFTSRDEDPYCVACFGELFA 32



 Score = 29.8 bits (67), Expect = 0.011
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 93  CSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123
           C+ C+  L  +QF S+ E  YC  C+   FA
Sbjct: 2   CTGCQTPLAGQQFTSRDEDPYCVACFGELFA 32


>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 33.6 bits (77), Expect = 5e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 56 CYESVFANSCEECSKIIGIDSKDLSYKDKHWHEACF 91
          CYE+ FA  C  CSK   +    ++Y+D+ WH  C 
Sbjct: 2  CYENKFAPRCARCSKT--LTQGGVTYRDQPWHRECL 35



 Score = 22.4 bits (48), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 117 CYDAQFASRCDGCSEI 132
           CY+ +FA RC  CS+ 
Sbjct: 2   CYENKFAPRCARCSKT 17


>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 31.2 bits (71), Expect = 0.003
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 30 FCCWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62
          F C QC +      +   +   YC   ++ +FA
Sbjct: 1  FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 33



 Score = 28.9 bits (65), Expect = 0.024
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 91  FSCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123
           F C++C Q   +  F     + YC + +   FA
Sbjct: 1   FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 33


>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2,
           FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 29.0 bits (65), Expect = 0.021
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 93  CSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123
           C +C+Q +  K F  K  + +C  CY+ Q A
Sbjct: 2   CHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 32



 Score = 25.1 bits (55), Expect = 0.57
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 32 CWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62
          C +C + +  + ++ +D+  +C+ CYE   A
Sbjct: 2  CHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 32


>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2,
          FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 27

 Score = 28.8 bits (64), Expect = 0.024
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACF 91
          C+EC K I   ++ + YK   WHE CF
Sbjct: 1  CQECKKTIMPGTRKMEYKGSSWHETCF 27


>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 27

 Score = 28.4 bits (63), Expect = 0.035
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACF 91
          C  C + +   S+ L Y  + WHE CF
Sbjct: 1  CSACGETVMPGSRKLEYGGQTWHEHCF 27


>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 27.8 bits (62), Expect = 0.057
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 93  CSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123
           CS C Q L  + F       YC  CY+ +FA
Sbjct: 2   CSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 32



 Score = 27.1 bits (60), Expect = 0.11
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 32 CWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62
          C  C++ L  + +V      YC+ CYE+ FA
Sbjct: 2  CSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 32


>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1,
          FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 27.2 bits (60), Expect = 0.100
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 32 CWQCDESLTGQRYVLRDDHPYCIKCYES 59
          C  C + L GQR+   +D  YC+ CY++
Sbjct: 2  CVTCSKKLAGQRFTAVEDQYYCVDCYKN 29



 Score = 22.6 bits (48), Expect = 4.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 93  CSKCRQSLVDKQFGSKSEKIYCGNCY 118
           C  C + L  ++F +  ++ YC +CY
Sbjct: 2   CVTCSKKLAGQRFTAVEDQYYCVDCY 27


>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
           CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 49

 Score = 27.4 bits (61), Expect = 0.12
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 93  CSKCRQSLVDKQFGSKSEKIYCGNCYDAQFASRCDGCS 130
           C+KC +SL       K  +IYC  CY   F  +  G  
Sbjct: 2   CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFG 39


>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1,
           FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 26.2 bits (57), Expect = 0.28
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 92  SCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123
           +CS C+Q +    F  K E  YC  C++ +FA
Sbjct: 1   TCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA 32


>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
           CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 65

 Score = 26.7 bits (59), Expect = 0.31
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 93  CSKCRQSLVDKQFGSKSEKIYCGNCYDAQF 122
           C  C+++L         ++IYC +CY  ++
Sbjct: 2   CMVCKKNLDSTTVAVHGDEIYCKSCYGKKY 31



 Score = 22.9 bits (49), Expect = 8.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 32 CWQCDESLTGQRYVLRDDHPYCIKCY 57
          C  C ++L      +  D  YC  CY
Sbjct: 2  CMVCKKNLDSTTVAVHGDEIYCKSCY 27


>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 25.6 bits (56), Expect = 0.42
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 30 FCCWQCDESLTGQRYVLRDDHPYCIKCYESVFAN 63
          F C +C++   G R+  R    YC   Y  +F +
Sbjct: 1  FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 34


>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 25.5 bits (56), Expect = 0.43
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 92  SCSKCRQSLVDKQFGSKSEKIYCGNCYDAQFA 123
           +C+ C+ ++    F  +   +YC  CY+  FA
Sbjct: 1   NCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 32



 Score = 22.4 bits (48), Expect = 5.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 32 CWQCDESLTGQRYVLRDDHPYCIKCYESVFA 62
          C  C  ++    +V      YC  CYE  FA
Sbjct: 2  CAHCKNTMAYIGFVEEKGALYCELCYEKFFA 32


>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1,
           FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 25.0 bits (54), Expect = 0.57
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 93  CSKCRQSLVDKQFGSKSEKIYCGNC 117
           C+KC   L ++ F +K  KI C  C
Sbjct: 2   CAKCLHPLANETFVAKDNKILCNKC 26


>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 24.7 bits (54), Expect = 0.68
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 32 CWQCDESLTGQRYVLRDDHPYCIKCYESVF 61
          C  C   LTG+ Y+ +D  PYC   Y + F
Sbjct: 2  CQTCSVILTGE-YISKDGVPYCESDYHAQF 30


>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1,
          FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 24.1 bits (52), Expect = 1.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACF 91
          C +C+K I   S  ++Y+D+ WH  CF
Sbjct: 1  CVKCNKAI--TSGGITYQDQPWHADCF 25


>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2,
          FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 24.1 bits (52), Expect = 1.1
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 65 CEECSKIIGIDSKDLSYKDKHWHEACF 91
          C +C K I   +  ++Y+++ WH+ CF
Sbjct: 1  CVQCKKPI--TTGGVTYREQPWHKECF 25


>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5,
          FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 24.1 bits (52), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 65 CEECSK-IIGI-DSKDLSYKDKHWHEACF 91
          C  CSK I G+  +K + ++D  WH  CF
Sbjct: 1  CVACSKPISGLTGAKFICFQDSQWHSECF 29


>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2,
          FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 24.0 bits (52), Expect = 1.3
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 65 CEECSK-IIGI-DSKDLSYKDKHWHEACF 91
          C  C+  I G+  +K +S++++ WH  CF
Sbjct: 1  CAGCTNPISGLGGTKYISFEERQWHNDCF 29


>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein
          6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 33

 Score = 23.2 bits (50), Expect = 2.6
 Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 32 CWQCDESLTGQRYVL-RDDHPYCIKCYESVFA 62
          C  C   L G  + +      +CI+ +   FA
Sbjct: 2  CVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 33


>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
          malonyl-CoA ACP transacylase FabD {Escherichia coli
          [TaxId: 562]}
          Length = 235

 Score = 25.2 bits (54), Expect = 2.7
 Identities = 5/39 (12%), Positives = 12/39 (30%)

Query: 58 ESVFANSCEECSKIIGIDSKDLSYKDKHWHEACFSCSKC 96
            +   +  E S  +G D   L+ +           ++ 
Sbjct: 24 YPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 62


>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 35

 Score = 23.4 bits (51), Expect = 2.7
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 57 YESVFANSCEECSKIIGIDSKDLSYKDKHWHEACF 91
          + ++F+  C  C++ +      LS  D  WH  CF
Sbjct: 3  FLAMFSPKCGGCNRPV--LENYLSAMDTVWHPECF 35


>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein,
           CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
           CRP2 [TaxId: 93934]}
          Length = 31

 Score = 23.0 bits (49), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 91  FSCSKCRQSLVDKQFGSKSEKIYCGNCY 118
           F C+KC +SL       K  +IYC  CY
Sbjct: 1   FRCAKCGKSLESTTLTEKEGEIYCKGCY 28


>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5,
           FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 34

 Score = 23.0 bits (49), Expect = 3.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 92  SCSKCRQSLVDKQFGSKSEKIYCGNC 117
           +C KC  SLV K F +++++I+C  C
Sbjct: 1   NCGKCSVSLVGKGFLTQNKEIFCQKC 26


>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
           freundii [TaxId: 546]}
          Length = 397

 Score = 25.0 bits (54), Expect = 3.8
 Identities = 7/64 (10%), Positives = 12/64 (18%), Gaps = 5/64 (7%)

Query: 26  SGQHFCCWQCDESLTGQRYVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKH 85
           +           +L  Q      DH                      GI+ + +      
Sbjct: 85  ASGISAITTTLLTLCQQG-----DHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPE 139

Query: 86  WHEA 89
              A
Sbjct: 140 EIRA 143


>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
           isozyme XII [TaxId: 9606]}
          Length = 260

 Score = 24.1 bits (51), Expect = 7.1
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 85  HWHEACFSCSKCRQSLVD 102
            W +   SC    QS +D
Sbjct: 12  SWSKKYPSCGGLLQSPID 29


>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 86

 Score = 23.0 bits (49), Expect = 8.2
 Identities = 8/46 (17%), Positives = 16/46 (34%)

Query: 44 YVLRDDHPYCIKCYESVFANSCEECSKIIGIDSKDLSYKDKHWHEA 89
          +++     Y I  + S      E   +  G D+ +      H  +A
Sbjct: 22 WMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDA 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.455 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,046
Number of extensions: 25630
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 110
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.9 bits)