Query psy8112
Match_columns 687
No_of_seqs 367 out of 873
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 18:54:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00064 histone acetyltransfe 100.0 2E-125 3E-130 1019.0 30.7 371 12-684 145-546 (552)
2 PLN00104 MYST -like histone ac 100.0 1E-124 3E-129 1013.8 32.5 369 1-681 72-446 (450)
3 PLN03239 histone acetyltransfe 100.0 8E-119 2E-123 941.2 27.6 342 18-676 1-351 (351)
4 KOG2747|consensus 100.0 1E-115 2E-120 929.2 23.0 345 14-674 49-396 (396)
5 PLN03238 probable histone acet 100.0 3E-111 6E-116 865.1 26.3 287 90-677 1-290 (290)
6 COG5027 SAS2 Histone acetyltra 100.0 2E-106 4E-111 839.3 22.9 360 1-673 22-395 (395)
7 PF01853 MOZ_SAS: MOZ/SAS fami 100.0 2.3E-87 5E-92 656.3 14.1 187 459-645 1-188 (188)
8 PF01853 MOZ_SAS: MOZ/SAS fami 100.0 2.2E-77 4.8E-82 586.0 10.9 178 162-348 1-178 (188)
9 KOG2747|consensus 100.0 9.4E-48 2E-52 409.9 10.2 102 317-418 141-242 (396)
10 PLN00104 MYST -like histone ac 100.0 5.8E-46 1.3E-50 402.6 11.0 109 315-519 179-287 (450)
11 PLN03238 probable histone acet 100.0 1E-45 2.2E-50 380.9 10.1 100 315-414 29-131 (290)
12 PTZ00064 histone acetyltransfe 100.0 1.9E-45 4.1E-50 398.3 10.9 104 312-415 258-361 (552)
13 PLN03239 histone acetyltransfe 100.0 7.4E-44 1.6E-48 375.4 10.5 104 312-415 80-190 (351)
14 COG5027 SAS2 Histone acetyltra 100.0 4.8E-42 1E-46 358.3 10.2 102 316-417 140-241 (395)
15 PF11717 Tudor-knot: RNA bindi 99.2 4.7E-12 1E-16 102.6 3.5 38 1-40 18-55 (55)
16 cd00024 CHROMO Chromatin organ 96.4 0.0031 6.7E-08 49.7 3.3 40 2-41 6-45 (55)
17 smart00298 CHROMO Chromatin or 96.0 0.0052 1.1E-07 48.2 2.6 38 2-40 5-42 (55)
18 PF00583 Acetyltransf_1: Acety 94.4 0.03 6.5E-07 46.2 2.5 51 225-275 4-59 (83)
19 PF13673 Acetyltransf_10: Acet 94.2 0.066 1.4E-06 46.9 4.5 40 227-270 54-93 (117)
20 PF13673 Acetyltransf_10: Acet 93.7 0.056 1.2E-06 47.4 3.1 40 524-567 54-93 (117)
21 PRK10146 aminoalkylphosphonic 93.5 0.12 2.5E-06 47.1 5.0 49 226-274 56-109 (144)
22 PRK07757 acetyltransferase; Pr 93.1 0.14 3.1E-06 47.5 4.8 48 226-273 50-97 (152)
23 PF12324 HTH_15: Helix-turn-he 92.6 0.2 4.2E-06 44.3 4.6 47 595-643 28-74 (77)
24 PF00583 Acetyltransf_1: Acety 92.0 0.042 9.1E-07 45.3 -0.1 49 523-571 5-58 (83)
25 PF00096 zf-C2H2: Zinc finger, 91.9 0.079 1.7E-06 35.2 1.1 22 138-159 1-22 (23)
26 TIGR02382 wecD_rffC TDP-D-fuco 91.9 0.26 5.6E-06 48.3 5.2 45 227-271 109-153 (191)
27 PRK10146 aminoalkylphosphonic 91.8 0.12 2.5E-06 47.2 2.4 48 524-571 57-109 (144)
28 PHA01807 hypothetical protein 91.7 0.26 5.6E-06 48.1 4.8 49 226-274 62-114 (153)
29 PF13508 Acetyltransf_7: Acety 91.2 0.32 6.9E-06 40.7 4.4 40 226-266 12-51 (79)
30 PRK10514 putative acetyltransf 91.2 0.24 5.3E-06 45.3 4.0 38 227-269 60-97 (145)
31 TIGR01575 rimI ribosomal-prote 91.0 0.43 9.3E-06 42.0 5.2 47 226-273 40-86 (131)
32 PRK07757 acetyltransferase; Pr 91.0 0.16 3.4E-06 47.2 2.5 46 524-569 51-96 (152)
33 PRK10975 TDP-fucosamine acetyl 90.5 0.39 8.5E-06 47.0 4.9 47 227-273 112-158 (194)
34 PF13508 Acetyltransf_7: Acety 90.1 0.25 5.5E-06 41.3 2.7 40 523-563 12-51 (79)
35 PLN02706 glucosamine 6-phospha 89.8 0.63 1.4E-05 43.1 5.4 28 247-274 91-118 (150)
36 PRK09831 putative acyltransfer 89.7 0.35 7.7E-06 45.1 3.7 39 226-269 62-100 (147)
37 PF13527 Acetyltransf_9: Acety 89.5 0.26 5.5E-06 44.1 2.5 34 242-275 73-106 (127)
38 TIGR02382 wecD_rffC TDP-D-fuco 89.2 0.29 6.4E-06 48.0 2.9 41 524-564 109-149 (191)
39 PRK12308 bifunctional arginino 89.1 0.44 9.6E-06 55.7 4.7 56 215-274 505-560 (614)
40 smart00550 Zalpha Z-DNA-bindin 89.1 0.97 2.1E-05 38.3 5.5 45 594-638 9-56 (68)
41 TIGR03827 GNAT_ablB putative b 88.9 0.78 1.7E-05 47.7 5.9 58 212-273 157-215 (266)
42 PHA01807 hypothetical protein 88.8 0.27 5.8E-06 48.0 2.2 49 523-571 62-114 (153)
43 PTZ00330 acetyltransferase; Pr 88.7 0.87 1.9E-05 41.6 5.4 48 226-273 61-114 (147)
44 PF09339 HTH_IclR: IclR helix- 88.6 0.62 1.3E-05 37.1 3.8 41 595-636 7-50 (52)
45 cd04301 NAT_SF N-Acyltransfera 88.5 0.68 1.5E-05 34.4 3.9 46 226-271 8-55 (65)
46 PF13894 zf-C2H2_4: C2H2-type 88.0 0.32 6.9E-06 31.6 1.5 22 138-159 1-22 (24)
47 PLN02825 amino-acid N-acetyltr 87.8 0.7 1.5E-05 53.4 5.1 58 214-275 408-466 (515)
48 PRK10975 TDP-fucosamine acetyl 87.7 0.39 8.5E-06 47.0 2.7 45 524-568 112-156 (194)
49 PRK10514 putative acetyltransf 87.5 0.38 8.1E-06 44.1 2.3 37 524-565 60-96 (145)
50 TIGR01575 rimI ribosomal-prote 87.5 0.47 1E-05 41.8 2.8 45 523-568 40-84 (131)
51 PRK09831 putative acyltransfer 87.0 0.42 9.1E-06 44.5 2.3 37 523-564 62-98 (147)
52 PRK10140 putative acetyltransf 86.5 1.1 2.5E-05 41.2 4.9 44 226-270 60-107 (162)
53 PF08445 FR47: FR47-like prote 86.5 0.37 8E-06 42.2 1.5 23 242-264 22-44 (86)
54 PRK07922 N-acetylglutamate syn 86.4 1.2 2.6E-05 43.3 5.2 49 226-274 55-103 (169)
55 PRK03624 putative acetyltransf 86.2 1.3 2.8E-05 39.3 4.9 45 227-272 55-99 (140)
56 COG0454 WecD Histone acetyltra 86.0 0.49 1.1E-05 37.1 1.9 29 247-275 87-115 (156)
57 PF13420 Acetyltransf_4: Acety 85.8 1.6 3.5E-05 40.3 5.5 44 226-270 60-105 (155)
58 PRK12308 bifunctional arginino 85.8 0.47 1E-05 55.5 2.4 56 512-571 505-560 (614)
59 KOG3216|consensus 85.5 0.47 1E-05 47.0 1.8 68 197-272 43-115 (163)
60 PRK05279 N-acetylglutamate syn 85.3 1.1 2.3E-05 50.2 4.8 48 227-274 344-392 (441)
61 PRK13688 hypothetical protein; 85.2 0.94 2E-05 44.2 3.8 23 243-265 81-103 (156)
62 KOG2696|consensus 84.4 1.6 3.4E-05 48.6 5.4 96 187-282 154-260 (403)
63 PLN02706 glucosamine 6-phospha 84.2 0.84 1.8E-05 42.2 2.9 26 544-569 91-116 (150)
64 cd04301 NAT_SF N-Acyltransfera 84.0 0.63 1.4E-05 34.6 1.6 44 523-566 8-53 (65)
65 PF12802 MarR_2: MarR family; 83.8 2.4 5.1E-05 34.0 4.9 45 594-638 8-55 (62)
66 TIGR03827 GNAT_ablB putative b 83.7 0.94 2E-05 47.1 3.3 55 510-568 158-213 (266)
67 PF04760 IF2_N: Translation in 83.7 0.59 1.3E-05 37.6 1.4 28 607-634 3-31 (54)
68 PRK10562 putative acetyltransf 83.7 1.3 2.8E-05 41.0 3.9 44 215-266 50-93 (145)
69 COG0456 RimI Acetyltransferase 83.6 2 4.3E-05 40.4 5.1 48 227-274 72-124 (177)
70 PLN02825 amino-acid N-acetyltr 83.4 0.75 1.6E-05 53.1 2.6 56 512-571 409-465 (515)
71 PF13527 Acetyltransf_9: Acety 83.3 0.33 7.1E-06 43.5 -0.3 34 539-572 73-106 (127)
72 TIGR03448 mycothiol_MshD mycot 83.2 2 4.3E-05 44.4 5.4 43 226-268 55-97 (292)
73 PF00385 Chromo: Chromo (CHRro 83.1 1.8 3.8E-05 34.5 3.9 38 3-41 5-44 (55)
74 PF13412 HTH_24: Winged helix- 82.9 2.9 6.4E-05 32.4 5.0 40 594-635 6-48 (48)
75 PRK10140 putative acetyltransf 82.7 1.1 2.5E-05 41.3 3.1 39 523-562 60-102 (162)
76 TIGR03448 mycothiol_MshD mycot 82.7 1.9 4.2E-05 44.5 5.1 47 226-272 209-257 (292)
77 PTZ00330 acetyltransferase; Pr 82.7 1.1 2.3E-05 41.0 2.8 45 524-568 62-112 (147)
78 PF08445 FR47: FR47-like prote 82.6 0.42 9.2E-06 41.8 0.2 22 539-560 22-43 (86)
79 PRK13239 alkylmercury lyase; P 82.5 2.3 4.9E-05 44.0 5.4 43 595-639 26-68 (206)
80 PF07381 DUF1495: Winged helix 82.4 2.1 4.5E-05 38.9 4.5 40 593-632 11-50 (90)
81 PRK13688 hypothetical protein; 82.0 0.94 2E-05 44.2 2.3 23 539-561 80-102 (156)
82 PF02319 E2F_TDP: E2F/DP famil 82.0 3.5 7.7E-05 35.3 5.6 47 594-640 11-65 (71)
83 TIGR03103 trio_acet_GNAT GNAT- 81.9 2.3 4.9E-05 49.4 5.7 60 213-274 123-188 (547)
84 PF13912 zf-C2H2_6: C2H2-type 81.8 1 2.2E-05 30.9 1.8 22 137-158 1-22 (27)
85 smart00419 HTH_CRP helix_turn_ 81.8 3.1 6.7E-05 31.4 4.7 37 607-643 8-47 (48)
86 TIGR01890 N-Ac-Glu-synth amino 81.5 2 4.2E-05 48.1 4.9 49 227-275 332-381 (429)
87 PRK10314 putative acyltransfer 81.4 1.7 3.7E-05 41.7 3.8 46 226-271 57-104 (153)
88 smart00346 HTH_ICLR helix_turn 81.1 4.9 0.00011 34.5 6.2 57 595-652 9-68 (91)
89 PF13545 HTH_Crp_2: Crp-like h 80.8 5.1 0.00011 33.4 6.1 45 607-652 28-75 (76)
90 PF02082 Rrf2: Transcriptional 80.7 3.7 8.1E-05 35.6 5.4 52 595-646 12-70 (83)
91 PRK03624 putative acetyltransf 80.6 1.3 2.7E-05 39.4 2.5 44 524-568 55-98 (140)
92 PF13420 Acetyltransf_4: Acety 80.6 1.6 3.4E-05 40.3 3.2 45 523-567 60-105 (155)
93 TIGR00124 cit_ly_ligase [citra 80.3 2.3 5E-05 46.5 4.8 59 206-273 24-82 (332)
94 smart00418 HTH_ARSR helix_turn 80.2 8.9 0.00019 29.6 6.9 57 596-655 2-63 (66)
95 PRK07922 N-acetylglutamate syn 79.9 1.3 2.8E-05 43.1 2.5 48 523-570 55-102 (169)
96 PRK10314 putative acyltransfer 79.9 1.9 4.2E-05 41.3 3.7 45 523-567 57-103 (153)
97 PRK10562 putative acetyltransf 79.8 1.3 2.8E-05 41.0 2.4 45 511-563 49-93 (145)
98 PRK05279 N-acetylglutamate syn 79.8 1.2 2.5E-05 49.9 2.4 48 524-571 344-392 (441)
99 TIGR02406 ectoine_EctA L-2,4-d 78.9 3.7 8E-05 39.2 5.2 45 227-272 50-97 (157)
100 cd02169 Citrate_lyase_ligase C 77.9 3.2 7E-05 44.8 5.0 43 227-274 16-58 (297)
101 PF12171 zf-C2H2_jaz: Zinc-fin 77.7 0.9 1.9E-05 31.7 0.5 21 138-158 2-22 (27)
102 cd00092 HTH_CRP helix_turn_hel 77.2 8.8 0.00019 30.9 6.3 37 606-642 24-64 (67)
103 COG0456 RimI Acetyltransferase 77.1 2 4.3E-05 40.4 2.8 46 524-569 72-122 (177)
104 PF01726 LexA_DNA_bind: LexA D 77.0 3.8 8.1E-05 34.8 4.1 46 595-640 10-62 (65)
105 PF13302 Acetyltransf_3: Acety 76.6 3.9 8.4E-05 36.8 4.4 55 213-270 56-112 (142)
106 COG0454 WecD Histone acetyltra 76.2 0.69 1.5E-05 36.3 -0.5 26 544-569 87-112 (156)
107 KOG3216|consensus 76.0 0.72 1.6E-05 45.8 -0.5 35 539-576 85-119 (163)
108 PF08220 HTH_DeoR: DeoR-like h 75.4 9 0.00019 31.3 5.8 48 594-643 3-53 (57)
109 KOG2696|consensus 75.2 2.6 5.5E-05 47.0 3.3 164 484-652 154-344 (403)
110 PF13463 HTH_27: Winged helix 74.9 8.5 0.00018 31.3 5.6 53 594-647 6-66 (68)
111 PF01978 TrmB: Sugar-specific 74.7 3.3 7.2E-05 34.3 3.2 44 596-641 13-59 (68)
112 TIGR00124 cit_ly_ligase [citra 74.6 2.1 4.5E-05 46.9 2.4 65 497-570 18-82 (332)
113 TIGR01890 N-Ac-Glu-synth amino 74.3 2 4.4E-05 48.0 2.4 48 524-571 332-380 (429)
114 cd00090 HTH_ARSR Arsenical Res 73.0 21 0.00046 28.2 7.4 59 590-651 6-71 (78)
115 TIGR02431 pcaR_pcaU beta-ketoa 72.9 7.4 0.00016 40.1 5.9 47 595-642 13-62 (248)
116 TIGR02944 suf_reg_Xantho FeS a 72.9 7.6 0.00017 36.1 5.5 68 590-657 8-83 (130)
117 PHA02768 hypothetical protein; 71.9 2 4.4E-05 35.8 1.2 22 138-159 6-27 (55)
118 TIGR03103 trio_acet_GNAT GNAT- 71.8 3 6.4E-05 48.5 3.0 59 510-570 123-187 (547)
119 TIGR02010 IscR iron-sulfur clu 71.7 11 0.00023 35.7 6.2 64 594-657 11-83 (135)
120 PRK10163 DNA-binding transcrip 71.4 10 0.00022 39.9 6.6 43 595-638 29-74 (271)
121 PF12874 zf-met: Zinc-finger o 70.8 3.6 7.8E-05 27.7 2.1 21 138-158 1-21 (25)
122 TIGR00738 rrf2_super rrf2 fami 70.8 8 0.00017 35.7 5.1 63 595-657 12-83 (132)
123 TIGR03826 YvyF flagellar opero 69.7 7.3 0.00016 37.9 4.7 41 595-635 34-74 (137)
124 PF08279 HTH_11: HTH domain; 69.2 7.7 0.00017 30.7 4.0 38 594-632 3-43 (55)
125 PF13302 Acetyltransf_3: Acety 68.8 4.3 9.2E-05 36.5 2.8 49 510-561 56-106 (142)
126 PF08784 RPA_C: Replication pr 68.3 6.4 0.00014 35.3 3.8 42 590-631 46-89 (102)
127 COG1959 Predicted transcriptio 68.0 9.2 0.0002 37.2 5.0 54 597-650 14-74 (150)
128 PF09904 HTH_43: Winged helix- 67.5 21 0.00045 32.7 6.8 65 590-656 6-85 (90)
129 PF01022 HTH_5: Bacterial regu 67.5 11 0.00024 29.4 4.5 40 594-636 5-47 (47)
130 cd02169 Citrate_lyase_ligase C 67.2 3.6 7.8E-05 44.4 2.3 43 524-571 16-58 (297)
131 PF13913 zf-C2HC_2: zinc-finge 66.5 3 6.6E-05 29.1 1.0 24 137-161 2-25 (25)
132 PRK09834 DNA-binding transcrip 65.5 15 0.00033 38.3 6.4 43 595-638 15-60 (263)
133 COG1414 IclR Transcriptional r 65.1 15 0.00032 38.3 6.3 45 595-640 8-55 (246)
134 PRK15090 DNA-binding transcrip 64.6 15 0.00033 38.0 6.2 46 595-642 18-68 (257)
135 PHA02943 hypothetical protein; 64.5 28 0.00061 34.9 7.5 56 594-652 14-74 (165)
136 TIGR02406 ectoine_EctA L-2,4-d 64.3 5.4 0.00012 38.1 2.6 43 524-567 50-95 (157)
137 TIGR01610 phage_O_Nterm phage 63.9 13 0.00028 33.4 4.8 44 605-648 45-91 (95)
138 PRK01346 hypothetical protein; 63.7 7.7 0.00017 42.6 4.1 49 227-275 57-113 (411)
139 TIGR00498 lexA SOS regulatory 63.5 12 0.00025 37.3 4.9 48 594-641 9-63 (199)
140 smart00355 ZnF_C2H2 zinc finge 63.1 4.1 8.8E-05 26.4 1.1 21 138-158 1-21 (26)
141 PF14394 DUF4423: Domain of un 63.0 19 0.00042 35.9 6.3 62 576-639 9-76 (171)
142 smart00561 MBT Present in Dros 62.5 8.7 0.00019 35.0 3.5 36 2-43 48-83 (96)
143 PF01325 Fe_dep_repress: Iron 62.0 26 0.00057 29.2 5.9 37 604-640 19-58 (60)
144 smart00345 HTH_GNTR helix_turn 61.2 18 0.00039 28.1 4.7 38 604-641 16-57 (60)
145 PRK00135 scpB segregation and 61.0 42 0.00092 34.2 8.4 57 595-651 7-74 (188)
146 smart00420 HTH_DEOR helix_turn 60.9 24 0.00052 26.7 5.2 44 595-640 4-50 (53)
147 TIGR01686 FkbH FkbH-like domai 60.8 13 0.00028 39.9 5.0 59 215-274 231-290 (320)
148 PRK11569 transcriptional repre 60.4 21 0.00046 37.5 6.4 43 595-638 32-77 (274)
149 PRK09491 rimI ribosomal-protei 59.8 4.7 0.0001 37.1 1.3 26 247-272 69-94 (146)
150 PRK10857 DNA-binding transcrip 59.1 21 0.00045 35.4 5.7 54 604-657 22-83 (164)
151 PRK11920 rirA iron-responsive 59.0 25 0.00054 34.3 6.2 63 595-657 12-82 (153)
152 cd07377 WHTH_GntR Winged helix 58.5 42 0.00092 26.5 6.5 38 605-642 22-63 (66)
153 PRK00215 LexA repressor; Valid 58.5 18 0.00039 36.2 5.3 51 595-645 8-66 (205)
154 PF01418 HTH_6: Helix-turn-hel 58.5 7.9 0.00017 33.3 2.4 39 595-633 20-60 (77)
155 PF05301 Mec-17: Touch recepto 57.9 11 0.00025 36.0 3.5 51 215-265 6-70 (120)
156 PF04539 Sigma70_r3: Sigma-70 57.2 9.9 0.00021 32.1 2.7 34 600-633 13-46 (78)
157 smart00451 ZnF_U1 U1-like zinc 56.9 8.6 0.00019 27.7 2.0 22 137-158 3-24 (35)
158 PF13523 Acetyltransf_8: Acety 56.9 18 0.0004 33.5 4.8 40 227-266 58-103 (152)
159 PF08221 HTH_9: RNA polymerase 56.1 22 0.00047 29.8 4.5 43 594-638 16-61 (62)
160 PRK09391 fixK transcriptional 55.9 22 0.00048 36.0 5.5 46 607-652 179-227 (230)
161 PRK11014 transcriptional repre 55.8 27 0.00059 33.1 5.8 48 603-650 21-74 (141)
162 PF12728 HTH_17: Helix-turn-he 55.3 34 0.00074 26.7 5.3 48 608-656 2-49 (51)
163 PRK06266 transcription initiat 54.6 53 0.0011 33.1 7.8 59 595-655 26-95 (178)
164 PF10007 DUF2250: Uncharacteri 53.9 25 0.00055 32.1 4.9 45 595-641 11-58 (92)
165 PRK10151 ribosomal-protein-L7/ 53.8 20 0.00043 34.3 4.6 38 227-264 77-115 (179)
166 PF13718 GNAT_acetyltr_2: GNAT 52.6 7 0.00015 40.1 1.3 23 247-269 96-118 (196)
167 TIGR03338 phnR_burk phosphonat 52.0 56 0.0012 32.5 7.6 52 603-654 30-86 (212)
168 PF01047 MarR: MarR family; I 52.0 24 0.00052 28.1 4.0 41 595-637 7-50 (59)
169 PRK13918 CRP/FNR family transc 51.8 32 0.0007 33.4 5.7 48 607-655 149-199 (202)
170 TIGR01764 excise DNA binding d 51.8 39 0.00085 25.2 5.0 47 608-655 2-48 (49)
171 PRK09491 rimI ribosomal-protei 51.3 12 0.00026 34.5 2.5 43 524-567 50-92 (146)
172 PRK10870 transcriptional repre 51.1 52 0.0011 32.6 7.1 59 591-649 55-121 (176)
173 PF13404 HTH_AsnC-type: AsnC-t 50.4 24 0.00052 27.5 3.6 35 595-631 7-41 (42)
174 PF09012 FeoC: FeoC like trans 49.9 19 0.00041 30.3 3.3 41 595-637 4-47 (69)
175 PRK01346 hypothetical protein; 49.9 12 0.00026 41.2 2.6 47 524-570 57-111 (411)
176 PHA00673 acetyltransferase dom 49.5 41 0.00089 33.4 6.0 61 226-286 64-135 (154)
177 PF14542 Acetyltransf_CG: GCN5 49.1 12 0.00027 32.4 2.1 34 242-275 23-56 (78)
178 TIGR03697 NtcA_cyano global ni 48.9 41 0.00088 32.3 5.9 45 607-652 143-190 (193)
179 TIGR00373 conserved hypothetic 48.5 69 0.0015 31.6 7.4 58 596-655 19-87 (158)
180 TIGR01686 FkbH FkbH-like domai 48.4 13 0.00028 40.0 2.5 59 512-571 231-290 (320)
181 PF00096 zf-C2H2: Zinc finger, 48.1 7.8 0.00017 25.5 0.5 22 335-356 1-22 (23)
182 COG2388 Predicted acetyltransf 48.0 19 0.0004 33.4 3.1 65 214-282 16-80 (99)
183 TIGR02147 Fsuc_second hypothet 48.0 43 0.00093 36.0 6.3 62 575-637 106-172 (271)
184 PRK07921 RNA polymerase sigma 46.7 35 0.00075 37.3 5.5 27 605-631 187-213 (324)
185 PRK00135 scpB segregation and 46.7 28 0.00061 35.4 4.5 45 606-650 103-153 (188)
186 TIGR01889 Staph_reg_Sar staphy 46.4 93 0.002 28.2 7.5 56 596-651 30-95 (109)
187 PRK10151 ribosomal-protein-L7/ 45.4 24 0.00053 33.7 3.7 44 512-560 69-114 (179)
188 PF14947 HTH_45: Winged helix- 45.2 53 0.0011 28.4 5.4 50 595-644 7-59 (77)
189 PF08444 Gly_acyl_tr_C: Aralky 44.5 7 0.00015 35.5 -0.1 15 249-263 27-41 (89)
190 PF04079 DUF387: Putative tran 43.3 51 0.0011 32.7 5.6 55 596-651 2-66 (159)
191 PF13523 Acetyltransf_8: Acety 43.3 22 0.00047 33.0 2.9 38 524-561 58-101 (152)
192 PF09756 DDRGK: DDRGK domain; 43.0 29 0.00062 35.6 3.9 67 597-666 105-176 (188)
193 PHA00616 hypothetical protein 43.0 11 0.00024 30.2 0.8 23 137-159 1-23 (44)
194 PF01710 HTH_Tnp_IS630: Transp 42.8 39 0.00085 31.4 4.5 40 594-635 60-99 (119)
195 PF12840 HTH_20: Helix-turn-he 41.8 25 0.00054 28.7 2.7 43 593-637 12-57 (61)
196 PF02186 TFIIE_beta: TFIIE bet 41.7 44 0.00094 28.6 4.2 26 596-622 10-35 (65)
197 PRK11534 DNA-binding transcrip 40.7 90 0.0019 31.4 7.1 52 603-654 26-82 (224)
198 PRK04214 rbn ribonuclease BN/u 40.5 47 0.001 37.3 5.5 55 596-650 297-357 (412)
199 smart00333 TUDOR Tudor domain. 40.3 22 0.00049 28.1 2.2 35 1-42 20-54 (57)
200 PF05584 Sulfolobus_pRN: Sulfo 40.2 42 0.00091 29.6 3.9 39 594-635 8-49 (72)
201 KOG2488|consensus 40.2 17 0.00037 37.5 1.8 49 511-563 92-145 (202)
202 PF09681 Phage_rep_org_N: N-te 39.7 85 0.0018 29.9 6.3 63 586-648 24-97 (121)
203 PRK10402 DNA-binding transcrip 39.3 1.2E+02 0.0025 30.6 7.7 61 594-655 153-219 (226)
204 PF13718 GNAT_acetyltr_2: GNAT 39.2 9.1 0.0002 39.3 -0.3 24 540-563 92-115 (196)
205 KOG3138|consensus 38.9 10 0.00022 38.7 0.0 20 247-266 95-114 (187)
206 PF12874 zf-met: Zinc-finger o 38.8 18 0.00038 24.3 1.2 21 335-355 1-21 (25)
207 TIGR02337 HpaR homoprotocatech 38.0 1.2E+02 0.0027 27.5 6.9 52 596-649 33-92 (118)
208 PF05641 Agenet: Agenet domain 37.4 32 0.00069 29.1 2.8 37 2-43 23-65 (68)
209 PF08444 Gly_acyl_tr_C: Aralky 37.1 7.2 0.00016 35.5 -1.2 15 546-560 27-41 (89)
210 cd04762 HTH_MerR-trunc Helix-T 37.1 73 0.0016 23.5 4.4 46 608-654 1-47 (49)
211 COG1246 ArgA N-acetylglutamate 37.0 17 0.00037 36.1 1.2 30 242-271 66-95 (153)
212 PRK10809 ribosomal-protein-S5- 36.9 53 0.0011 31.9 4.6 40 226-266 86-128 (194)
213 PF00392 GntR: Bacterial regul 36.7 1.2E+02 0.0027 24.8 6.1 37 604-640 20-60 (64)
214 TIGR01884 cas_HTH CRISPR locus 36.3 74 0.0016 32.0 5.7 43 594-638 146-191 (203)
215 PF08280 HTH_Mga: M protein tr 36.0 33 0.00071 28.2 2.6 36 595-632 9-44 (59)
216 PF04703 FaeA: FaeA-like prote 35.9 30 0.00064 29.5 2.3 44 593-637 2-48 (62)
217 PRK10906 DNA-binding transcrip 35.8 73 0.0016 33.5 5.7 47 594-642 8-57 (252)
218 KOG2488|consensus 35.1 13 0.00028 38.4 0.0 50 216-269 94-148 (202)
219 TIGR02844 spore_III_D sporulat 35.0 52 0.0011 29.3 3.8 50 594-656 9-58 (80)
220 TIGR00281 segregation and cond 34.9 1.9E+02 0.0041 29.6 8.3 57 595-651 4-72 (186)
221 COG1378 Predicted transcriptio 34.9 92 0.002 32.9 6.3 65 580-650 9-78 (247)
222 PHA00673 acetyltransferase dom 34.6 39 0.00084 33.6 3.2 60 524-583 65-135 (154)
223 PRK15130 spermidine N1-acetylt 34.3 38 0.00083 32.5 3.2 38 226-264 66-105 (186)
224 PHA00738 putative HTH transcri 34.3 1.2E+02 0.0026 28.8 6.2 49 593-643 14-66 (108)
225 COG2388 Predicted acetyltransf 33.4 17 0.00037 33.6 0.6 65 511-579 16-80 (99)
226 PF10771 DUF2582: Protein of u 33.2 46 0.00099 28.7 3.0 33 596-630 13-45 (65)
227 PRK09802 DNA-binding transcrip 33.2 83 0.0018 33.4 5.7 47 594-642 20-69 (269)
228 PRK11161 fumarate/nitrate redu 33.1 91 0.002 31.2 5.7 46 607-653 184-232 (235)
229 PF13909 zf-H2C2_5: C2H2-type 32.8 28 0.0006 23.3 1.4 20 138-158 1-20 (24)
230 PRK13777 transcriptional regul 32.6 2E+02 0.0044 29.2 8.1 53 596-650 50-110 (185)
231 TIGR01211 ELP3 histone acetylt 32.4 65 0.0014 37.8 5.1 26 250-275 466-491 (522)
232 COG1386 scpB Chromosome segreg 32.4 83 0.0018 32.1 5.3 45 607-651 106-156 (184)
233 PRK11512 DNA-binding transcrip 32.4 1.4E+02 0.003 28.2 6.5 45 606-650 53-105 (144)
234 PRK03902 manganese transport t 31.9 1.5E+02 0.0032 28.1 6.6 42 606-648 21-65 (142)
235 COG1321 TroR Mn-dependent tran 31.8 1E+02 0.0022 30.5 5.6 40 604-643 21-63 (154)
236 PF02820 MBT: mbt repeat; Int 31.7 54 0.0012 28.0 3.3 36 2-43 17-52 (73)
237 PF04492 Phage_rep_O: Bacterio 31.6 59 0.0013 30.0 3.7 43 595-637 37-87 (100)
238 PRK10434 srlR DNA-bindng trans 31.2 87 0.0019 32.9 5.4 47 594-642 8-57 (256)
239 COG1522 Lrp Transcriptional re 31.1 89 0.0019 29.3 5.0 42 594-637 11-55 (154)
240 PRK03837 transcriptional regul 31.0 1.3E+02 0.0028 30.4 6.5 40 603-642 32-75 (241)
241 PRK11302 DNA-binding transcrip 30.7 43 0.00093 34.8 3.0 41 594-634 19-61 (284)
242 COG4190 Predicted transcriptio 30.7 89 0.0019 30.8 4.8 43 595-639 68-113 (144)
243 TIGR03585 PseH pseudaminic aci 30.6 66 0.0014 29.5 4.0 47 214-266 52-100 (156)
244 PF13730 HTH_36: Helix-turn-he 30.2 64 0.0014 25.4 3.3 24 608-631 26-49 (55)
245 PF13413 HTH_25: Helix-turn-he 29.6 66 0.0014 27.0 3.4 27 606-633 9-35 (62)
246 KOG3396|consensus 29.3 87 0.0019 31.1 4.6 57 215-271 53-115 (150)
247 COG1510 Predicted transcriptio 29.2 45 0.00097 34.0 2.7 33 604-636 38-73 (177)
248 cd04508 TUDOR Tudor domains ar 28.9 40 0.00086 25.8 1.8 32 1-39 16-47 (48)
249 TIGR01714 phage_rep_org_N phag 28.7 1.3E+02 0.0027 28.9 5.5 60 586-646 24-93 (119)
250 smart00344 HTH_ASNC helix_turn 28.6 72 0.0016 28.4 3.7 39 595-635 7-48 (108)
251 PF14542 Acetyltransf_CG: GCN5 28.6 16 0.00034 31.8 -0.5 35 538-572 22-56 (78)
252 smart00576 BTP Bromodomain tra 28.5 25 0.00054 30.5 0.7 26 609-634 49-74 (77)
253 COG1349 GlpR Transcriptional r 28.2 1E+02 0.0022 32.4 5.3 49 594-644 8-59 (253)
254 PRK11511 DNA-binding transcrip 28.1 82 0.0018 29.5 4.1 40 594-633 12-52 (127)
255 COG1724 Predicted RNA binding 27.5 48 0.001 28.9 2.2 35 614-648 2-37 (66)
256 TIGR02885 spore_sigF RNA polym 27.5 1.2E+02 0.0025 30.8 5.4 27 605-631 111-137 (231)
257 COG3888 Predicted transcriptio 27.1 1.1E+02 0.0023 33.5 5.1 47 592-638 5-54 (321)
258 KOG3138|consensus 27.1 12 0.00026 38.2 -1.7 19 544-562 95-113 (187)
259 PF03374 ANT: Phage antirepres 27.0 87 0.0019 28.3 4.0 32 606-637 23-54 (111)
260 PF05301 Mec-17: Touch recepto 27.0 32 0.0007 33.0 1.2 24 539-562 44-70 (120)
261 PRK10809 ribosomal-protein-S5- 26.9 58 0.0013 31.6 3.1 38 523-561 86-126 (194)
262 PRK03573 transcriptional regul 26.9 2.2E+02 0.0047 26.7 6.8 53 596-649 36-96 (144)
263 COG1654 BirA Biotin operon rep 26.9 99 0.0022 27.6 4.2 54 595-648 7-65 (79)
264 PRK11337 DNA-binding transcrip 26.8 55 0.0012 34.4 3.1 40 594-633 31-72 (292)
265 PRK07122 RNA polymerase sigma 26.7 1.2E+02 0.0025 32.1 5.4 26 605-630 141-166 (264)
266 TIGR02702 SufR_cyano iron-sulf 26.5 80 0.0017 31.8 4.1 43 593-637 3-48 (203)
267 PRK09464 pdhR transcriptional 26.4 1.9E+02 0.0041 29.6 6.8 40 603-642 29-72 (254)
268 PRK10141 DNA-binding transcrip 26.1 2.5E+02 0.0053 26.7 6.9 52 595-648 20-76 (117)
269 PRK12427 flagellar biosynthesi 25.9 1.2E+02 0.0027 31.2 5.3 26 605-630 115-140 (231)
270 PRK11557 putative DNA-binding 25.5 63 0.0014 33.6 3.2 40 594-633 15-56 (278)
271 PF11994 DUF3489: Protein of u 25.4 1E+02 0.0022 27.3 3.9 34 594-629 13-46 (72)
272 PF02002 TFIIE_alpha: TFIIE al 25.4 63 0.0014 29.2 2.7 59 595-655 17-86 (105)
273 PF12756 zf-C2H2_2: C2H2 type 25.3 46 0.00099 28.5 1.8 25 137-161 50-74 (100)
274 PF06969 HemN_C: HemN C-termin 25.3 1.8E+02 0.0039 23.7 5.2 47 593-641 8-58 (66)
275 PRK15482 transcriptional regul 25.3 63 0.0014 33.9 3.2 40 594-633 19-60 (285)
276 TIGR03585 PseH pseudaminic aci 25.2 60 0.0013 29.8 2.7 45 511-561 52-98 (156)
277 PRK15130 spermidine N1-acetylt 24.8 61 0.0013 31.1 2.8 37 523-560 66-104 (186)
278 COG3153 Predicted acetyltransf 24.4 55 0.0012 33.0 2.4 50 226-275 55-109 (171)
279 PF00165 HTH_AraC: Bacterial r 24.2 89 0.0019 23.5 3.0 28 603-630 4-31 (42)
280 PRK07405 RNA polymerase sigma 24.1 1.4E+02 0.003 32.5 5.6 28 604-631 181-208 (317)
281 KOG2748|consensus 23.9 27 0.00058 38.9 0.1 38 4-43 16-53 (369)
282 TIGR02787 codY_Gpos GTP-sensin 23.8 1.4E+02 0.0031 32.0 5.4 46 607-652 198-250 (251)
283 TIGR02393 RpoD_Cterm RNA polym 23.6 1.4E+02 0.0031 30.5 5.3 28 604-631 100-127 (238)
284 PRK09990 DNA-binding transcrip 23.5 2.3E+02 0.005 29.0 6.8 38 603-640 26-67 (251)
285 PF07524 Bromo_TP: Bromodomain 23.5 35 0.00075 29.3 0.7 24 610-633 50-73 (77)
286 PF00325 Crp: Bacterial regula 23.4 61 0.0013 24.3 1.9 24 608-631 3-26 (32)
287 PF06163 DUF977: Bacterial pro 23.3 2.2E+02 0.0048 27.8 6.0 77 594-679 15-94 (127)
288 PRK07670 RNA polymerase sigma 23.2 1.4E+02 0.0031 30.8 5.3 25 605-629 123-147 (251)
289 KOG3235|consensus 23.2 85 0.0019 32.0 3.4 44 223-266 48-96 (193)
290 TIGR01211 ELP3 histone acetylt 23.2 57 0.0012 38.2 2.5 25 547-571 466-490 (522)
291 PF06413 Neugrin: Neugrin; In 23.1 1.4E+02 0.0029 31.5 5.0 48 573-630 4-52 (225)
292 PF09840 DUF2067: Uncharacteri 22.8 1.1E+02 0.0025 31.3 4.3 41 610-650 145-186 (190)
293 PRK07406 RNA polymerase sigma 22.7 1.5E+02 0.0033 33.3 5.6 27 605-631 237-263 (373)
294 COG4519 Uncharacterized protei 22.7 1.3E+02 0.0028 27.4 4.0 41 593-634 9-52 (95)
295 COG5112 UFD2 U1-like Zn-finger 22.6 66 0.0014 30.6 2.3 36 126-162 45-80 (126)
296 COG1246 ArgA N-acetylglutamate 22.6 27 0.00059 34.7 -0.1 25 538-562 65-89 (153)
297 PRK10421 DNA-binding transcrip 22.4 2.6E+02 0.0055 28.8 6.9 40 603-642 21-64 (253)
298 PF06971 Put_DNA-bind_N: Putat 22.4 82 0.0018 25.8 2.6 30 596-625 17-46 (50)
299 PRK10225 DNA-binding transcrip 22.2 2.5E+02 0.0054 28.9 6.7 39 603-641 28-70 (257)
300 TIGR02366 DHAK_reg probable di 22.1 95 0.0021 29.6 3.4 34 595-628 11-54 (176)
301 COG1247 Sortase and related ac 22.0 2.1E+02 0.0046 28.9 5.9 58 215-273 52-113 (169)
302 PF04405 ScdA_N: Domain of Unk 21.9 97 0.0021 25.8 3.0 28 605-632 29-56 (56)
303 PF02892 zf-BED: BED zinc fing 21.7 50 0.0011 25.2 1.2 34 123-160 6-44 (45)
304 PHA00732 hypothetical protein 21.4 52 0.0011 29.1 1.4 21 138-158 2-22 (79)
305 KOG2462|consensus 21.4 43 0.00093 36.3 1.0 26 134-159 212-237 (279)
306 PF13880 Acetyltransf_13: ESCO 21.3 40 0.00087 29.5 0.6 23 244-266 8-30 (70)
307 PRK07408 RNA polymerase sigma 21.3 1.7E+02 0.0037 30.5 5.4 25 605-629 127-151 (256)
308 PF13986 DUF4224: Domain of un 21.2 1.5E+02 0.0032 23.9 3.7 31 608-638 3-34 (47)
309 COG1191 FliA DNA-directed RNA 21.2 1.1E+02 0.0023 32.7 3.8 29 604-632 123-151 (247)
310 PF04182 B-block_TFIIIC: B-blo 21.2 1.3E+02 0.0029 25.8 3.8 42 594-635 5-49 (75)
311 PRK13509 transcriptional repre 21.1 1.6E+02 0.0034 30.9 5.1 47 594-642 8-57 (251)
312 PHA02701 ORF020 dsRNA-binding 21.0 1.5E+02 0.0033 30.4 4.8 48 593-641 6-56 (183)
313 PRK11414 colanic acid/biofilm 20.9 3E+02 0.0066 27.6 6.9 52 603-654 30-86 (221)
314 PRK11179 DNA-binding transcrip 20.9 1.2E+02 0.0026 29.2 3.9 41 594-636 12-55 (153)
315 COG4049 Uncharacterized protei 20.6 49 0.0011 28.2 1.0 28 134-161 14-41 (65)
316 smart00347 HTH_MARR helix_turn 20.5 1.5E+02 0.0033 25.0 4.1 53 595-649 14-74 (101)
317 PF12746 GNAT_acetyltran: GNAT 20.4 46 0.00099 35.7 1.0 22 242-263 187-210 (265)
318 PF09497 Med12: Transcription 20.3 59 0.0013 28.0 1.4 33 276-308 22-54 (64)
319 PRK11886 bifunctional biotin-- 20.3 2.3E+02 0.0049 30.5 6.2 55 595-651 8-72 (319)
No 1
>PTZ00064 histone acetyltransferase; Provisional
Probab=100.00 E-value=1.5e-125 Score=1018.97 Aligned_cols=371 Identities=39% Similarity=0.710 Sum_probs=316.2
Q ss_pred CCCeeEEEEEecCcccccccccccccccccccccchhhcc---ccc----cccccc--cccchhhhcccccccccccccc
Q psy8112 12 LENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWK---NKE----NQAIDL--LDQSDRKITRNQKRRHDEINHV 82 (687)
Q Consensus 12 ~~G~~eYYVHYvgfNKRLDEWVt~dRLdLs~~~~~~~~~~---~~~----~~~ss~--~~~~~rk~TR~~KRk~dEi~~~ 82 (687)
.++.++|||||+|+||||||||+.+||+++.......... +.. ...++. ..+..+++||+|||++++++++
T Consensus 145 ~~~~~eyYVHy~g~nrRlD~WV~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~tr~qKR~~d~~~~~ 224 (552)
T PTZ00064 145 IKEDYEFYVHFRGLNRRLDRWVKGKDIKLSFDVEELNDPNLIERFQKQGIKFISSLSVSNSANKSGNKSKKRNVGVLDIS 224 (552)
T ss_pred cCCCeEEEEEecCcCchHhhhcChhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3577899999999999999999999999853211110000 000 111111 2234448999999999966544
Q ss_pred c----cccccCCchhhhhhhhhcccccCCCccEEEEcCeeeeeccCCCCCcccCCCCcEeEecchhhccCCHHHHHHHhc
Q psy8112 83 Q----KTYEEMDPTTAALEKEHEAITKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKS 158 (687)
Q Consensus 83 ~----~~~~~~d~~~~~~e~~~~~~~~~kni~~i~~G~~~i~tWY~SPyP~e~~~~~~lyiCe~Cl~y~~~~~~~~~H~~ 158 (687)
+ .++++||+.+ .++|+++|++|||++|+||+|+|+||||||||+||++.++||||||||+||+++.+|.+|+.
T Consensus 225 ~e~~~~~~~~~d~~~---~kehee~tkvkNI~~I~~G~yei~TWYfSPYP~Ey~~~d~LYICEfCLkY~~s~~~l~rH~~ 301 (552)
T PTZ00064 225 DGEDPDEHEGMDHSA---ILDHEETTRLRTIGRVRIGKFILDTWYFSPLPDEYQNVDTLHFCEYCLDFFCFEDELIRHLS 301 (552)
T ss_pred cccCchhhccCChhh---hhcchhhhcCCCcCeEEECCeEecCCcCCCCChhhcCCCeEEEccchhhhhCCHHHHHHHHh
Confidence 2 1256677644 37899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCCCceeeecCCceEEEEeCCcchhhHhHhhhhhhccccccccccccCcceEEEEEEEcCCCcEEEEeecccccC
Q psy8112 159 ECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKES 238 (687)
Q Consensus 159 ~C~~r~PPG~eIYr~~~~sifEVDG~~~k~yCqnLcLlaKlFLdhKtlyydv~~FlFYvl~~~d~~g~h~vGyFSKEk~s 238 (687)
+|.++||||+||||++++|||||||+++++|||||||||||||||||||||||||+||||||.|+.|+
T Consensus 302 ~C~~rhPPG~EIYR~~~iSifEVDG~~~klYCQNLCLLAKLFLDhKTLYyDVdpFlFYVLtE~D~~G~------------ 369 (552)
T PTZ00064 302 RCQLRHPPGNEIYRKDNISVFEIDGALTRGYAENLCYLAKLFLDHKTLQYDVEPFLFYIVTEVDEEGC------------ 369 (552)
T ss_pred cCCCCCCCCCeEEEeCCEEEEEEeCccchhHHHHHHHHHHHhccCccccccccceEEEEEEEecCCCc------------
Confidence 99999999999999999999999999999999999999999999999999999999999998775444
Q ss_pred CCCceeeEEEecCccccccccchhhhhhhhhhhhcCCCCCCCCCCChhhhhHHHhhhHHHHHHHhhcCCCCCCccccccc
Q psy8112 239 PDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSNFFPFKPVVRTS 318 (687)
Q Consensus 239 ~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~~G~PEkPLSdlG~~sY~sYW~~~i~~~L~~~~~~~~~~~~~~~ 318 (687)
T Consensus 370 -------------------------------------------------------------------------------- 369 (552)
T PTZ00064 370 -------------------------------------------------------------------------------- 369 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchhhhhhhHHHhhhc
Q psy8112 319 SRSTRFPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFL 398 (687)
Q Consensus 319 ~~Sspyp~e~~~~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~ycqnlcl~~klfl 398 (687)
T Consensus 370 -------------------------------------------------------------------------------- 369 (552)
T PTZ00064 370 -------------------------------------------------------------------------------- 369 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeecCcceeEEEeeecccCccccccccCcchhhhhhhhhccccccccccccCcccccCCCCceeeeeCCeEEEEE
Q psy8112 399 DHKTLYFDVDPFLFYILCVIDKYDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSECTYCHPPGKEIYRCGNISIYEV 478 (687)
Q Consensus 399 ~~kt~~~~~~~f~fy~~~~~~~~~~~~~y~~~~~~~f~~~~~~~~~~~~~~~yf~~~~C~~~~PPG~eiYr~~~~svfEV 478 (687)
T Consensus 370 -------------------------------------------------------------------------------- 369 (552)
T PTZ00064 370 -------------------------------------------------------------------------------- 369 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCccchhhhhhhhhhhhcccccccccccCCceEEEEEEecCCCcEEEEeecccccCCCCceeEEEEecCCcccccccce
Q psy8112 479 DGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKF 558 (687)
Q Consensus 479 DG~~~k~ycqnLcLlaKlFLdhKtl~ydv~~FlFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~ 558 (687)
||||||||||.|+++||||||||||||||||||+|
T Consensus 370 ---------------------------------------------HiVGYFSKEK~S~~~nNLACILtLPpyQRKGYGkl 404 (552)
T PTZ00064 370 ---------------------------------------------HIVGYFSKEKVSLLHYNLACILTLPCYQRKGYGKL 404 (552)
T ss_pred ---------------------------------------------EEEEEecccccCcccCceEEEEecchhhhcchhhh
Confidence 55555555555556789999999999999999999
Q ss_pred eeecchhcccccCCCCCCCCcCChhhhhHHHhhhHHHHHHHHHcCC--------C----------CCcCHHHHHHhcCCc
Q psy8112 559 LISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSK--------G----------NSTTIKELSEMTSIA 620 (687)
Q Consensus 559 LI~fSY~Lsr~e~~~G~PEkPLSdlG~~sY~sYW~~~il~~l~~~~--------~----------~~~si~~is~~Tgi~ 620 (687)
||+|||+|||+||++|||||||||||++||++||+.+|+++|.+.. + ..+||+|||++|||+
T Consensus 405 LIdfSYeLSrrEgk~GsPEKPLSDLG~lSYrsYW~~~Ile~Ll~~~~~~~~~e~~~~k~~~~~~~~~iSI~dIS~~TgI~ 484 (552)
T PTZ00064 405 LVDLSYKLSLKEGKWGHPERPLSDLGRAIYNNWWAHRISEYLLEYFKQNKICERGGSKQPLQVSNYWKFIDNVVRSTGIR 484 (552)
T ss_pred hhhhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCcccHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999886421 1 128999999999999
Q ss_pred chhHHHHHHhcCcEEEeCCeEEEEeCHHHHHHHHHhhccCCCceeecCCCceEeCCCCCCCCcC
Q psy8112 621 QTDIISTLQAMNMVKYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRWTPPPKRVHSKS 684 (687)
Q Consensus 621 ~~Dii~tL~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~idp~~L~W~P~~~~~~~~~ 684 (687)
++|||.||++|||++||+|+|+|+++++++++++++. ++++++|||++|+|+|+...++|.+
T Consensus 485 ~eDII~TLq~L~llky~kgq~~I~~~~~~ie~~~~~~--~k~~~~id~~~L~W~Py~~~~~s~~ 546 (552)
T PTZ00064 485 REDVIRILEENGIMRNIKDQHYIFCNQEFLKGIVKRS--GRPGITLIDKYFNWVPFSRAPPSEV 546 (552)
T ss_pred HHHHHHHHHHCCcEEEeCCCEEEEECHHHHHHHHHHh--cCCCceechhHceecCCCCCCCCch
Confidence 9999999999999999999999999999999999875 3567899999999999988777654
No 2
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-124 Score=1013.78 Aligned_cols=369 Identities=55% Similarity=0.976 Sum_probs=326.1
Q ss_pred CcEEEEeeecC--CCCeeEEEEEecCcccccccccccccccccccccchhhccccccccccccccchhhhcccccccccc
Q psy8112 1 PAEIIQNRYNE--LENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAIDLLDQSDRKITRNQKRRHDE 78 (687)
Q Consensus 1 ~AEILsiR~~~--~~G~~eYYVHYvgfNKRLDEWVt~dRLdLs~~~~~~~~~~~~~~~~ss~~~~~~rk~TR~~KRk~dE 78 (687)
+|+||++|.++ +.+..+|||||+++||||||||+.+||+++..+.+... +... ..++++.||++||+.++
T Consensus 72 ~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLdls~~e~~~~~-----~~~~---~~~~~k~TR~qKRK~eE 143 (450)
T PLN00104 72 PVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLDLDTVETVGDE-----KVED---KVASLKMTRHQKRKIDE 143 (450)
T ss_pred EEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhcccccccccccc-----cccC---cccccccchhhcccccc
Confidence 48999999854 34678999999999999999999999999765332111 0000 11456689999999999
Q ss_pred ccccccccccCCchhhhhhhhhcccccCCCccEEEEcCeeeeeccCCCCCcccCCCCcEeEecchhhccCCHHHHHHHhc
Q psy8112 79 INHVQKTYEEMDPTTAALEKEHEAITKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKS 158 (687)
Q Consensus 79 i~~~~~~~~~~d~~~~~~e~~~~~~~~~kni~~i~~G~~~i~tWY~SPyP~e~~~~~~lyiCe~Cl~y~~~~~~~~~H~~ 158 (687)
+++++. .+++++ ..+++|+++|++|||++|+||+|+|+||||||||+||...++||||||||+||+++.+|.+|+.
T Consensus 144 in~ve~-~~~~d~---~~l~~~ee~tk~kni~~i~~G~y~i~~WY~SPyP~e~~~~~~lyiCe~Cl~y~~~~~~~~~H~~ 219 (450)
T PLN00104 144 THVEEG-HEELDA---ASLREHEEFTKVKNIATIELGRYEIDTWYFSPFPPEYNDCSKLYFCEFCLKFMKRKEQLQRHMK 219 (450)
T ss_pred cccccc-ccccCc---ccccccccccccCccCEEEECCeEeeeeecCCCChHHcCCCeEEEchhhhhhhcCHHHHHHHHh
Confidence 987763 455554 3457899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCCCceeeecCC----ceEEEEeCCcchhhHhHhhhhhhccccccccccccCcceEEEEEEEcCCCcEEEEeecc
Q psy8112 159 ECTYCHPPGKEIYRCGN----ISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSK 234 (687)
Q Consensus 159 ~C~~r~PPG~eIYr~~~----~sifEVDG~~~k~yCqnLcLlaKlFLdhKtlyydv~~FlFYvl~~~d~~g~h~vGyFSK 234 (687)
+|.++||||+||||+++ +|||||||+++++|||||||||||||||||||||||+|+||||||.|+.|
T Consensus 220 ~C~~~~PPG~eIYr~~~~~~~~si~EvDG~~~~~yCqnLcLlaKLFLdhKtlyydV~~FlFYvl~e~d~~g--------- 290 (450)
T PLN00104 220 KCDLKHPPGDEIYRHPTRQEGLSMFEVDGKKNKVYCQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRG--------- 290 (450)
T ss_pred cCCCCCCCcCeEEEcCCCCceEEEEEEeCCcchhHHHHHHHHHHHhhcCcceeccccceEEEEEEEecCCC---------
Confidence 99999999999999998 99999999999999999999999999999999999999999999876544
Q ss_pred cccCCCCceeeEEEecCccccccccchhhhhhhhhhhhcCCCCCCCCCCChhhhhHHHhhhHHHHHHHhhcCCCCCCccc
Q psy8112 235 EKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSNFFPFKPV 314 (687)
Q Consensus 235 Ek~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~~G~PEkPLSdlG~~sY~sYW~~~i~~~L~~~~~~~~~~~ 314 (687)
T Consensus 291 -------------------------------------------------------------------------------- 290 (450)
T PLN00104 291 -------------------------------------------------------------------------------- 290 (450)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccccccCCCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchhhhhhhHHH
Q psy8112 315 VRTSSRSTRFPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLA 394 (687)
Q Consensus 315 ~~~~~~Sspyp~e~~~~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~ycqnlcl~~ 394 (687)
T Consensus 291 -------------------------------------------------------------------------------- 290 (450)
T PLN00104 291 -------------------------------------------------------------------------------- 290 (450)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccccceeeecCcceeEEEeeecccCccccccccCcchhhhhhhhhccccccccccccCcccccCCCCceeeeeCCeE
Q psy8112 395 KLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSECTYCHPPGKEIYRCGNIS 474 (687)
Q Consensus 395 klfl~~kt~~~~~~~f~fy~~~~~~~~~~~~~y~~~~~~~f~~~~~~~~~~~~~~~yf~~~~C~~~~PPG~eiYr~~~~s 474 (687)
T Consensus 291 -------------------------------------------------------------------------------- 290 (450)
T PLN00104 291 -------------------------------------------------------------------------------- 290 (450)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCccchhhhhhhhhhhhcccccccccccCCceEEEEEEecCCCcEEEEeecccccCCCCceeEEEEecCCccccc
Q psy8112 475 IYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQG 554 (687)
Q Consensus 475 vfEVDG~~~k~ycqnLcLlaKlFLdhKtl~ydv~~FlFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkG 554 (687)
+||||||||||.|+++||||||||||||||||
T Consensus 291 ------------------------------------------------~h~vGyFSKEk~s~~~~NLaCIltlP~yQrkG 322 (450)
T PLN00104 291 ------------------------------------------------CHMVGYFSKEKHSEEDYNLACILTLPPYQRKG 322 (450)
T ss_pred ------------------------------------------------cEEEEEecccccCcCCCceEEEEecchhhhcc
Confidence 45555555556666678999999999999999
Q ss_pred ccceeeecchhcccccCCCCCCCCcCChhhhhHHHhhhHHHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCcE
Q psy8112 555 YGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMV 634 (687)
Q Consensus 555 yG~~LI~fSY~Lsr~e~~~G~PEkPLSdlG~~sY~sYW~~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~~ 634 (687)
||+|||+|||+|||+||++|||||||||||++||++||+.+|+++|.+..+ .+||+|||++|||+++|||+||++||||
T Consensus 323 yG~~LI~~SYeLSr~eg~~G~PEkPLSdlG~~sY~~YW~~~i~~~L~~~~~-~~si~~is~~T~i~~~Dii~tL~~l~~l 401 (450)
T PLN00104 323 YGKFLIAFSYELSKREGKVGTPERPLSDLGLVSYRGYWTRVLLEILKKHKG-NISIKELSDMTAIKAEDIVSTLQSLNLI 401 (450)
T ss_pred hhheehhheehhhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CccHHHHHHHhCCCHHHHHHHHHHCCCE
Confidence 999999999999999999999999999999999999999999999987654 6999999999999999999999999999
Q ss_pred EEeCCeEEEEeCHHHHHHHHHhhccCCCceeecCCCceEeCCCCCCC
Q psy8112 635 KYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRWTPPPKRVH 681 (687)
Q Consensus 635 ~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~idp~~L~W~P~~~~~~ 681 (687)
+||+|+|+|++++++|++++++. +++++.|||++|+|+|+....+
T Consensus 402 ~~~kg~~~i~~~~~~i~~~~~~~--~~~~~~i~~~~L~W~p~~~~~~ 446 (450)
T PLN00104 402 QYRKGQHVICADPKVLEEHLKAA--GRGGLEVDPSKLIWTPYKEQPP 446 (450)
T ss_pred EecCCcEEEEECHHHHHHHHHHh--cCCCcEEchhhcEEeCCCCCCC
Confidence 99999999999999999999874 4567899999999999876543
No 3
>PLN03239 histone acetyltransferase; Provisional
Probab=100.00 E-value=8.4e-119 Score=941.19 Aligned_cols=342 Identities=45% Similarity=0.829 Sum_probs=292.1
Q ss_pred EEEEecCcccccccccccccccccccccchhhccccccccccccccchhhhccccccccccccccccccccCCchhhhhh
Q psy8112 18 YYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAIDLLDQSDRKITRNQKRRHDEINHVQKTYEEMDPTTAALE 97 (687)
Q Consensus 18 YYVHYvgfNKRLDEWVt~dRLdLs~~~~~~~~~~~~~~~~ss~~~~~~rk~TR~~KRk~dEi~~~~~~~~~~d~~~~~~e 97 (687)
|||||+++|||||+||+.++|++...+.+..... ..+.++++++..++. +....+++|+ +.+
T Consensus 1 yYVh~~~~nkRlD~Wv~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~ 62 (351)
T PLN03239 1 YYVHYKDFNRRMDEWISKDKSNEEILALPSDHLA---------THTVGEDVVATIAAP------ELDEHEGLDD---AAL 62 (351)
T ss_pred CeEEeccccchHhhhcChhhcchhhhcCCccccc---------ccccccccccccccc------ccccccccCh---hhh
Confidence 7999999999999999999998876543322110 011112222222211 1122345554 345
Q ss_pred hhhcccccCCCccEEEEcCeeeeeccCCCCCcccCC----CCcEeEecchhhccCCHHHHHHHhcc---CCcCCCCCcee
Q psy8112 98 KEHEAITKVKYIDKIMIGKCEIDTWYFSPYPDECKK----KPKLWICEFCLKYMTMERTYRYHKSE---CTYCHPPGKEI 170 (687)
Q Consensus 98 ~~~~~~~~~kni~~i~~G~~~i~tWY~SPyP~e~~~----~~~lyiCe~Cl~y~~~~~~~~~H~~~---C~~r~PPG~eI 170 (687)
++|+++|++|||++|+||+|+|+||||||||++|.+ .++||||||||+||+++.+|.+|+.+ |.++||||+||
T Consensus 63 ~~~~e~t~~rNI~~I~~G~y~i~tWYfSPyP~e~~~~~~~~~~lYiCE~Clky~~~~~~l~~H~~~~~~c~~~~PPG~eI 142 (351)
T PLN03239 63 KEHEEVTKVKNVAFLELGPYQMDTWYFSPLPKELFKAGGFIDVLYVCEFSFGFFARKSELLRFQAKELPKERRHPPGNEI 142 (351)
T ss_pred hhhHHHhcCCCCCEEEECCeeecCCCCCCCcHHHhcccccCceEEEeccchhhhcCHHHHHHHHHhhccccCcCCCCCeE
Confidence 789999999999999999999999999999999965 78999999999999999999999987 88999999999
Q ss_pred eecCCceEEEEeCCcchhhHhHhhhhhhccccccccccccCcceEEEEEEEcCCCcEEEEeecccccCCCCceeeEEEec
Q psy8112 171 YRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTL 250 (687)
Q Consensus 171 Yr~~~~sifEVDG~~~k~yCqnLcLlaKlFLdhKtlyydv~~FlFYvl~~~d~~g~h~vGyFSKEk~s~~~~NLaCIl~l 250 (687)
||++++|||||||+++++|||||||||||||||||||||||||+||||||.|+.|+
T Consensus 143 YR~~~~sifEVDG~~~~~yCQnLCLlaKLFLdhKtlyyDV~~FlFYVl~e~D~~g~------------------------ 198 (351)
T PLN03239 143 YRCGDLAMFEVDGFEERIYCQNLCYIAKLFLDHKTLYFDVDPFLFYVLCEVDERGF------------------------ 198 (351)
T ss_pred EEeCCEEEEEEeCccchHHHHHHHHHHHHhhcCcceeccccceEEEEEEEecCCce------------------------
Confidence 99999999999999999999999999999999999999999999999998775444
Q ss_pred CccccccccchhhhhhhhhhhhcCCCCCCCCCCChhhhhHHHhhhHHHHHHHhhcCCCCCCcccccccCCCCcccccccC
Q psy8112 251 PPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSNFFPFKPVVRTSSRSTRFPIECKK 330 (687)
Q Consensus 251 P~yQrkGyG~lLI~fSY~Ls~~eg~~G~PEkPLSdlG~~sY~sYW~~~i~~~L~~~~~~~~~~~~~~~~~Sspyp~e~~~ 330 (687)
T Consensus 199 -------------------------------------------------------------------------------- 198 (351)
T PLN03239 199 -------------------------------------------------------------------------------- 198 (351)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchhhhhhhHHHhhhccccceeeecCcc
Q psy8112 331 KPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPF 410 (687)
Q Consensus 331 ~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~ycqnlcl~~klfl~~kt~~~~~~~f 410 (687)
T Consensus 199 -------------------------------------------------------------------------------- 198 (351)
T PLN03239 199 -------------------------------------------------------------------------------- 198 (351)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeecccCccccccccCcchhhhhhhhhccccccccccccCcccccCCCCceeeeeCCeEEEEEeCCccchhhhhh
Q psy8112 411 LFYILCVIDKYDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNL 490 (687)
Q Consensus 411 ~fy~~~~~~~~~~~~~y~~~~~~~f~~~~~~~~~~~~~~~yf~~~~C~~~~PPG~eiYr~~~~svfEVDG~~~k~ycqnL 490 (687)
T Consensus 199 -------------------------------------------------------------------------------- 198 (351)
T PLN03239 199 -------------------------------------------------------------------------------- 198 (351)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccccccccccCCceEEEEEEecCCCcEEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhccccc
Q psy8112 491 CLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 570 (687)
Q Consensus 491 cLlaKlFLdhKtl~ydv~~FlFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e 570 (687)
|+||||||||.|+++||||||||||||||||||+|||+|||+|||+|
T Consensus 199 ---------------------------------h~vGYFSKEK~s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~E 245 (351)
T PLN03239 199 ---------------------------------HPVGYYSKEKYSDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKE 245 (351)
T ss_pred ---------------------------------EEEEEeeecccCCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhc
Confidence 55555555555556789999999999999999999999999999999
Q ss_pred CCCCCCCCcCChhhhhHHHhhhHHHHHHHHHcCCC--CCcCHHHHHHhcCCcchhHHHHHHhcCcEEEeCCeEEEEeCHH
Q psy8112 571 GLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSKG--NSTTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVICVTPK 648 (687)
Q Consensus 571 ~~~G~PEkPLSdlG~~sY~sYW~~~il~~l~~~~~--~~~si~~is~~Tgi~~~Dii~tL~~l~~~~~~~g~~~i~~~~~ 648 (687)
|++|||||||||||++||++||+.+|+++|.+..+ ..+||+|||++|||+++|||+||++|||+++++|+++|+++++
T Consensus 246 g~~G~PEkPLSdlG~~sY~~YW~~~il~~L~~~~~~~~~~si~dis~~Tgi~~~DIi~tL~~l~~l~~~~g~~~i~~~~~ 325 (351)
T PLN03239 246 EKVGSPEKPMSDLGQQAYIPYWGSTIVDFLLNHSGNDSSLSIMDIAKKTSIMAEDIVFALNQLGILKFINGIYFIAAEKG 325 (351)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHhCCCHHHHHHHHHHCCcEEEECCeEEEEeCHH
Confidence 99999999999999999999999999999987654 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceeecCCCceEeCC
Q psy8112 649 IVEEHIQSTQYKRPRLQVDPTYLRWTPP 676 (687)
Q Consensus 649 ~~~~~~~~~~~~~~~~~idp~~L~W~P~ 676 (687)
++++++++.. +++++|||++|+|+|.
T Consensus 326 ~l~~~~~~~~--~~~~~id~~~L~W~p~ 351 (351)
T PLN03239 326 LLEELAEKHP--VKEPRVDPSKLHWTPF 351 (351)
T ss_pred HHHHHHHHhc--CCCccCChhHceecCC
Confidence 9999988754 3356899999999995
No 4
>KOG2747|consensus
Probab=100.00 E-value=1e-115 Score=929.17 Aligned_cols=345 Identities=57% Similarity=0.993 Sum_probs=292.0
Q ss_pred CeeEEEEEecCcccccccccccccccccccccchhhccccccccccccccchhhhcccccccccccc--ccccccccCCc
Q psy8112 14 NCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAIDLLDQSDRKITRNQKRRHDEIN--HVQKTYEEMDP 91 (687)
Q Consensus 14 G~~eYYVHYvgfNKRLDEWVt~dRLdLs~~~~~~~~~~~~~~~~ss~~~~~~rk~TR~~KRk~dEi~--~~~~~~~~~d~ 91 (687)
...+|||||++.|||+||||+ ... +....+.+....+ ...++..++. ++.+ +++.....+++
T Consensus 49 ~~~~~~v~~~~~~~r~d~~~~------~~~--~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 112 (396)
T KOG2747|consen 49 ASLEYYVHYQKLNRRLDEWIG------KPS--QSIKKARKEKLEG---IKPEREITRL-----DEMDSRQVQEKLNKFKG 112 (396)
T ss_pred CCccchhhHHhhhcccccccc------Ccc--ccccccccccccc---cccchhhhcc-----ccchhhhhhhhcccccc
Confidence 367999999999999999999 111 0000000000000 0111222221 3322 23333445566
Q ss_pred hhhhhhhhhcccccCCCccEEEEcCeeeeeccCCCCCcccCCCCcEeEecchhhccCCHHHHHHHhccCCcCCCCCceee
Q psy8112 92 TTAALEKEHEAITKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIY 171 (687)
Q Consensus 92 ~~~~~e~~~~~~~~~kni~~i~~G~~~i~tWY~SPyP~e~~~~~~lyiCe~Cl~y~~~~~~~~~H~~~C~~r~PPG~eIY 171 (687)
++++.|++|++++++|||++|+||+|+|+||||||||+|++..++||||||||+||++++.|+||+.+|.++||||+|||
T Consensus 113 s~~~~~~~~~~~~~~r~i~~i~~G~yei~~WY~SPyP~e~~~~~~lYiCEfCLkY~~s~~~l~rH~~kC~~rhPPG~EIY 192 (396)
T KOG2747|consen 113 STVQLEQEHEEVEKVRNIEKIEFGRYEIKTWYFSPYPEEYAKLDKLYICEFCLKYMKSRTSLQRHLKKCKLRHPPGNEIY 192 (396)
T ss_pred chhhhhccccccceecccceEEEcceeeeeeecCCCchhhccCCeEEEehHHHhHhchHHHHHHHHHhcCCCCCCcceee
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEeCCcchhhHhHhhhhhhccccccccccccCcceEEEEEEEcCCCcEEEEeecccccCCCCceeeEEEecC
Q psy8112 172 RCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLP 251 (687)
Q Consensus 172 r~~~~sifEVDG~~~k~yCqnLcLlaKlFLdhKtlyydv~~FlFYvl~~~d~~g~h~vGyFSKEk~s~~~~NLaCIl~lP 251 (687)
|+++||||||||+++++|||||||||||||||||||||||||+||||||.|+.|+
T Consensus 193 R~~~iSvfEVDG~~~k~YCQnLCLlaKLFLdhKTLYyDvdpFlFYVlte~d~~G~------------------------- 247 (396)
T KOG2747|consen 193 RKGNISVFEVDGRKQKLYCQNLCLLAKLFLDHKTLYYDVDPFLFYVLTECDSYGC------------------------- 247 (396)
T ss_pred ecCCEEEEEecCcchhHHHHHHHHHHHHHhcCceeEEeccceEEEEEEecCCcce-------------------------
Confidence 9999999999999999999999999999999999999999999999999775442
Q ss_pred ccccccccchhhhhhhhhhhhcCCCCCCCCCCChhhhhHHHhhhHHHHHHHhhcCCCCCCcccccccCCCCcccccccCC
Q psy8112 252 PYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSNFFPFKPVVRTSSRSTRFPIECKKK 331 (687)
Q Consensus 252 ~yQrkGyG~lLI~fSY~Ls~~eg~~G~PEkPLSdlG~~sY~sYW~~~i~~~L~~~~~~~~~~~~~~~~~Sspyp~e~~~~ 331 (687)
T Consensus 248 -------------------------------------------------------------------------------- 247 (396)
T KOG2747|consen 248 -------------------------------------------------------------------------------- 247 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchhhhhhhHHHhhhccccceeeecCcce
Q psy8112 332 PKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFL 411 (687)
Q Consensus 332 ~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~ycqnlcl~~klfl~~kt~~~~~~~f~ 411 (687)
T Consensus 248 -------------------------------------------------------------------------------- 247 (396)
T KOG2747|consen 248 -------------------------------------------------------------------------------- 247 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeecccCccccccccCcchhhhhhhhhccccccccccccCcccccCCCCceeeeeCCeEEEEEeCCccchhhhhhh
Q psy8112 412 FYILCVIDKYDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLC 491 (687)
Q Consensus 412 fy~~~~~~~~~~~~~y~~~~~~~f~~~~~~~~~~~~~~~yf~~~~C~~~~PPG~eiYr~~~~svfEVDG~~~k~ycqnLc 491 (687)
T Consensus 248 -------------------------------------------------------------------------------- 247 (396)
T KOG2747|consen 248 -------------------------------------------------------------------------------- 247 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcccccccccccCCceEEEEEEecCCCcEEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 492 LLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 492 LlaKlFLdhKtl~ydv~~FlFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
||||||||+|.++||||||||||||||||||+|||||||+|||+||
T Consensus 248 ----------------------------------VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~ 293 (396)
T KOG2747|consen 248 ----------------------------------VGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRREG 293 (396)
T ss_pred ----------------------------------eeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhhcccC
Confidence 5555555555567999999999999999999999999999999999
Q ss_pred CCCCCCCcCChhhhhHHHhhhHHHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCcEEEeCCeEEEEeC-HHHH
Q psy8112 572 LIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVICVT-PKIV 650 (687)
Q Consensus 572 ~~G~PEkPLSdlG~~sY~sYW~~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~~~~~~g~~~i~~~-~~~~ 650 (687)
++|||||||||||++|||+||+.+|+++|.+..+..|||+|||++|||+++|||+|||+|||++|++| +++.++ +..+
T Consensus 294 ~~GsPEKPLSDLGllsYrsYW~~~ll~~L~~~~~~~isI~~iS~~Tgi~~~DIisTL~~L~m~~y~k~-~~~~~~~~~~i 372 (396)
T KOG2747|consen 294 KIGSPEKPLSDLGLLSYRSYWRCVLLELLRKHRGEHISIKEISKETGIRPDDIISTLQSLNMIKYYKG-YIISICSDDKL 372 (396)
T ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHhhCCCHHHHHHHHHhhCCccccCC-eeEEEechHHH
Confidence 99999999999999999999999999999998888899999999999999999999999999999999 888888 7888
Q ss_pred HHHHHhhccCCCceeecCCCceEe
Q psy8112 651 EEHIQSTQYKRPRLQVDPTYLRWT 674 (687)
Q Consensus 651 ~~~~~~~~~~~~~~~idp~~L~W~ 674 (687)
+.+.++....++..++||++|.|+
T Consensus 373 ~~~~~~~~~~k~~~~~~~~~l~W~ 396 (396)
T KOG2747|consen 373 EDHKRNWAKFKKPRLLDPDCLLWT 396 (396)
T ss_pred HHHHHHhhccCCccccCchhcccC
Confidence 878776655455668999999996
No 5
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=100.00 E-value=3e-111 Score=865.11 Aligned_cols=287 Identities=57% Similarity=1.051 Sum_probs=265.1
Q ss_pred CchhhhhhhhhcccccCCCccEEEEcCeeeeeccCCCCCcccCCCCcEeEecchhhccCCHHHHHHHhccCCcCCCCCce
Q psy8112 90 DPTTAALEKEHEAITKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKE 169 (687)
Q Consensus 90 d~~~~~~e~~~~~~~~~kni~~i~~G~~~i~tWY~SPyP~e~~~~~~lyiCe~Cl~y~~~~~~~~~H~~~C~~r~PPG~e 169 (687)
||.++++|++|+++|++|||++|+||+|+|+||||||||+||...++||||||||+||+++.+|.+|+.+|.++||||+|
T Consensus 1 ~~~~~~~~~~~ee~t~~kni~~i~~G~y~i~~WY~SPyP~e~~~~~~lyiCe~Clky~~~~~~l~~H~~~C~~r~PPG~e 80 (290)
T PLN03238 1 DPVLAELEREHEETTKVKNIEMIELGKYEMDTWYYSPYPEPYASCTKLYICEYCLKYMRKKKSLLRHLAKCDIRQPPGGG 80 (290)
T ss_pred ChhhhHHHhcchhhhcCCCcCEEEECCeeeecCccCCCChHHcCCCeEEEcCCCcchhCCHHHHHHHHHhCCCCCCCcCE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee---cCCceEEEEeCCcchhhHhHhhhhhhccccccccccccCcceEEEEEEEcCCCcEEEEeecccccCCCCceeeE
Q psy8112 170 IYR---CGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVAC 246 (687)
Q Consensus 170 IYr---~~~~sifEVDG~~~k~yCqnLcLlaKlFLdhKtlyydv~~FlFYvl~~~d~~g~h~vGyFSKEk~s~~~~NLaC 246 (687)
||| +|++|||||||+++++|||||||||||||||||||||||+|+|||||+.|++|
T Consensus 81 IYr~~~~~~~sifEVDG~~~~~yCqnLcLlaKLFLdhKtlyyDV~~FlFYVl~e~d~~g--------------------- 139 (290)
T PLN03238 81 IYGAVTEGPLSVFEVDGKKAKVYCQNLCLLAKLFLDHKTLYYDVDPFLFYVMTEVDDHG--------------------- 139 (290)
T ss_pred eEecCCCCcEEEEEEeCCcchhHHHHHHHHHHHhhcCccccccccceEEEEEEEecCCC---------------------
Confidence 999 78999999999999999999999999999999999999999999999876544
Q ss_pred EEecCccccccccchhhhhhhhhhhhcCCCCCCCCCCChhhhhHHHhhhHHHHHHHhhcCCCCCCcccccccCCCCcccc
Q psy8112 247 ILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSNFFPFKPVVRTSSRSTRFPI 326 (687)
Q Consensus 247 Il~lP~yQrkGyG~lLI~fSY~Ls~~eg~~G~PEkPLSdlG~~sY~sYW~~~i~~~L~~~~~~~~~~~~~~~~~Sspyp~ 326 (687)
T Consensus 140 -------------------------------------------------------------------------------- 139 (290)
T PLN03238 140 -------------------------------------------------------------------------------- 139 (290)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchhhhhhhHHHhhhccccceeee
Q psy8112 327 ECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFD 406 (687)
Q Consensus 327 e~~~~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~ycqnlcl~~klfl~~kt~~~~ 406 (687)
T Consensus 140 -------------------------------------------------------------------------------- 139 (290)
T PLN03238 140 -------------------------------------------------------------------------------- 139 (290)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcceeEEEeeecccCccccccccCcchhhhhhhhhccccccccccccCcccccCCCCceeeeeCCeEEEEEeCCccchh
Q psy8112 407 VDPFLFYILCVIDKYDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLY 486 (687)
Q Consensus 407 ~~~f~fy~~~~~~~~~~~~~y~~~~~~~f~~~~~~~~~~~~~~~yf~~~~C~~~~PPG~eiYr~~~~svfEVDG~~~k~y 486 (687)
T Consensus 140 -------------------------------------------------------------------------------- 139 (290)
T PLN03238 140 -------------------------------------------------------------------------------- 139 (290)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhcccccccccccCCceEEEEEEecCCCcEEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhc
Q psy8112 487 CQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYEL 566 (687)
Q Consensus 487 cqnLcLlaKlFLdhKtl~ydv~~FlFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~L 566 (687)
+|+||||||||.|+++||||||||||||||||||+|||+|||+|
T Consensus 140 ------------------------------------~h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeL 183 (290)
T PLN03238 140 ------------------------------------SHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYEL 183 (290)
T ss_pred ------------------------------------cEEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHH
Confidence 45566666666666678899999999999999999999999999
Q ss_pred ccccCCCCCCCCcCChhhhhHHHhhhHHHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCcEEEeCCeEEEEeC
Q psy8112 567 SKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVICVT 646 (687)
Q Consensus 567 sr~e~~~G~PEkPLSdlG~~sY~sYW~~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~~~~~~g~~~i~~~ 646 (687)
||+||++|||||||||||++||++||+.+|+++|.+. +..+||+|||++|||+++||++||++||++++++|+|+|+++
T Consensus 184 Sr~Eg~~G~PEkPLSdlG~~sY~~YW~~~il~~L~~~-~~~isi~~is~~T~i~~~Dii~tL~~l~~l~~~~g~~~i~~~ 262 (290)
T PLN03238 184 SKREGKVGTPERPLSDLGKVSFRSYWTRVLLEQLRDV-KGDVSIKDLSLATGIRGEDIVSTLQSLNLIKYWKGQHVIHVD 262 (290)
T ss_pred hhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHhCCCHHHHHHHHHHCCcEEEECCcEEEEeC
Confidence 9999999999999999999999999999999999763 467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCceeecCCCceEeCCC
Q psy8112 647 PKIVEEHIQSTQYKRPRLQVDPTYLRWTPPP 677 (687)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~idp~~L~W~P~~ 677 (687)
++++++++++.+ +++.|||++|+|+|.+
T Consensus 263 ~~~~~~~~~~~~---~~~~id~~~L~W~p~~ 290 (290)
T PLN03238 263 QRVLDEHWAKFA---HQRVIEVDCLHWQPLP 290 (290)
T ss_pred HHHHHHHHHhcC---CCccccchhceecCCC
Confidence 999999988732 3568999999999974
No 6
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-106 Score=839.34 Aligned_cols=360 Identities=45% Similarity=0.806 Sum_probs=296.3
Q ss_pred CcEEEEeeecCCCCeeEEEEEecCcccccccccccccccccccccchhhc-cccccccccccccchhhhcccccccccc-
Q psy8112 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHW-KNKENQAIDLLDQSDRKITRNQKRRHDE- 78 (687)
Q Consensus 1 ~AEILsiR~~~~~G~~eYYVHYvgfNKRLDEWVt~dRLdLs~~~~~~~~~-~~~~~~~ss~~~~~~rk~TR~~KRk~dE- 78 (687)
+||||+++.++ .+..|||||+++||||||||+.+.|++.....-.+.. +..+.+ +.++++..+.
T Consensus 22 ~~~Il~~~~~k--~~~~fyvh~~~~nrrl~e~i~~~~i~~~~~i~~~~~~~q~~k~k------------~ek~~k~~d~~ 87 (395)
T COG5027 22 KAEILEINTRK--SRIKFYVHYVELNRRLDEWITADLINLGAAISIPKRKKQTEKGK------------KEKKPKVSDRM 87 (395)
T ss_pred EEeeeeeccCc--cCccEEEeehhhhhhhhhheeccccccccccccCcccccchhhh------------cccCCccCccc
Confidence 48999999874 6789999999999999999999999995442211111 100000 0000011110
Q ss_pred ---ccccc--cccccCCchhhhhhhhh-------cccccCCCccEEEEcCeeeeeccCCCCCcccCCCCcEeEecchhhc
Q psy8112 79 ---INHVQ--KTYEEMDPTTAALEKEH-------EAITKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKY 146 (687)
Q Consensus 79 ---i~~~~--~~~~~~d~~~~~~e~~~-------~~~~~~kni~~i~~G~~~i~tWY~SPyP~e~~~~~~lyiCe~Cl~y 146 (687)
...++ ..++..++...+.++-+ .+...++||..|.+|+|++++|||||||.++...+.+|||||||+|
T Consensus 88 ~~~~~~~q~~~~~~~~~E~e~~~~r~~~~~~~~p~~~~~v~~i~~i~~~~y~iepwyfSpyp~~~s~~d~vyICefClkY 167 (395)
T COG5027 88 DLDNENVQLEMLYSISNEREIRQLRFGGSKVQNPHEGARVKNINEIKLGNYEIEPWYFSPYPEEFSDLDIVYICEFCLKY 167 (395)
T ss_pred ccccccchhcccccccchhHHHhhccCccccCCccchhhhccchhheecccccccccccCcchhhcccceEEEhhhhHHH
Confidence 00011 00111111111222221 2455899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhccCCcCCCCCceeeecCCceEEEEeCCcchhhHhHhhhhhhccccccccccccCcceEEEEEEEcCCCc
Q psy8112 147 MTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGA 226 (687)
Q Consensus 147 ~~~~~~~~~H~~~C~~r~PPG~eIYr~~~~sifEVDG~~~k~yCqnLcLlaKlFLdhKtlyydv~~FlFYvl~~~d~~g~ 226 (687)
|.++.++.||+++|+++||||+|||||+.||||||||+++++|||||||||||||||||||||||||+|||||+.|+.|
T Consensus 168 ~~s~~~~~rH~~kC~~~~pPG~eiYrD~~iS~~EiDG~~q~~~CrnLCLlsKlFLd~KtLYyDVDpflFYvl~~~~~~~- 246 (395)
T COG5027 168 YGSQTSLVRHRKKCSLQHPPGNEIYRDKYISFFEIDGRKQRLYCRNLCLLSKLFLDHKTLYYDVDPFLFYVLTERGDTG- 246 (395)
T ss_pred hcchhHHHHHHhcCcCcCCCCceeeecCceEEEEEcCcchhhHHHHHHHHHHHHhcCceeEEeccceEEEEEEEcCCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876533
Q ss_pred EEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhcCCCCCCCCCCChhhhhHHHhhhHHHHHHHhhcC
Q psy8112 227 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNS 306 (687)
Q Consensus 227 h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~~G~PEkPLSdlG~~sY~sYW~~~i~~~L~~~ 306 (687)
T Consensus 247 -------------------------------------------------------------------------------- 246 (395)
T COG5027 247 -------------------------------------------------------------------------------- 246 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccCCCCcccccccCCCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchh
Q psy8112 307 NFFPFKPVVRTSSRSTRFPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLY 386 (687)
Q Consensus 307 ~~~~~~~~~~~~~~Sspyp~e~~~~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~y 386 (687)
T Consensus 247 -------------------------------------------------------------------------------- 246 (395)
T COG5027 247 -------------------------------------------------------------------------------- 246 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHhhhccccceeeecCcceeEEEeeecccCccccccccCcchhhhhhhhhccccccccccccCcccccCCCCce
Q psy8112 387 CQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSECTYCHPPGKE 466 (687)
Q Consensus 387 cqnlcl~~klfl~~kt~~~~~~~f~fy~~~~~~~~~~~~~y~~~~~~~f~~~~~~~~~~~~~~~yf~~~~C~~~~PPG~e 466 (687)
T Consensus 247 -------------------------------------------------------------------------------- 246 (395)
T COG5027 247 -------------------------------------------------------------------------------- 246 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeCCeEEEEEeCCccchhhhhhhhhhhhcccccccccccCCceEEEEEEecCCCcEEEEeecccccCCCCceeEEEEe
Q psy8112 467 IYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILT 546 (687)
Q Consensus 467 iYr~~~~svfEVDG~~~k~ycqnLcLlaKlFLdhKtl~ydv~~FlFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~ 546 (687)
+|+||||||||.|.++||||||||
T Consensus 247 --------------------------------------------------------~h~vGyFSKEK~S~~~yNLaCILt 270 (395)
T COG5027 247 --------------------------------------------------------CHLVGYFSKEKESEQDYNLACILT 270 (395)
T ss_pred --------------------------------------------------------eeeeeeechhhcccccCceEEEEe
Confidence 466666666666666799999999
Q ss_pred cCCcccccccceeeecchhcccccCCCCCCCCcCChhhhhHHHhhhHHHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHH
Q psy8112 547 LPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIIS 626 (687)
Q Consensus 547 lP~yQrkGyG~~LI~fSY~Lsr~e~~~G~PEkPLSdlG~~sY~sYW~~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~ 626 (687)
||||||+|||+|||||||+||++||++|||||||||||+++||+||+.+|++.|.+..++..+|+|||.+|||+++|||.
T Consensus 271 LP~yQRrGYG~lLIdFSY~Ls~~E~k~gsPEKPLSdlGLlsYr~YW~~~v~~~L~k~~~~~~~I~~Is~~TgM~~dDVI~ 350 (395)
T COG5027 271 LPPYQRRGYGKLLIDFSYLLSQKEGKVGSPEKPLSDLGLLSYRAYWSEIVAKLLLKMDKEITDINEISKETGMSTDDVIH 350 (395)
T ss_pred cChhHhcccceEeeeeeeecccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCcccccHHHHHhhhCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999998877666699999999999999999
Q ss_pred HHHhcCcEEEeCCeEEEEeCHHHHHHHHHhhccCCCceeecCCCceE
Q psy8112 627 TLQAMNMVKYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRW 673 (687)
Q Consensus 627 tL~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~idp~~L~W 673 (687)
||++|||+.+.+++|++.++.+.++...+....++ .+|+|+.|.|
T Consensus 351 tLe~L~il~~~~~~yI~~l~~~~l~~~~R~~~kk~--~~i~~d~L~w 395 (395)
T COG5027 351 TLEALNILREYKGQYIISLNSDKLHNYLRLWSKKR--RRINPDLLLW 395 (395)
T ss_pred HHHHhccchhhCceEEEEeccchhhhHHHHhhhhc--cccCHHhhCC
Confidence 99999999999999999999988888776654433 5799999998
No 7
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=100.00 E-value=2.3e-87 Score=656.30 Aligned_cols=187 Identities=70% Similarity=1.208 Sum_probs=169.7
Q ss_pred ccCCCCceeeeeCCeEEEEEeCCccchhhhhhhhhhhhcccccccccccCCceEEEEEEecCCCcEEEEeecccccCCCC
Q psy8112 459 YCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDG 538 (687)
Q Consensus 459 ~~~PPG~eiYr~~~~svfEVDG~~~k~ycqnLcLlaKlFLdhKtl~ydv~~FlFYVl~e~d~~g~h~vGyFSKEK~s~~~ 538 (687)
||+|||+||||++++|||||||+++++||||||||||||||||||||||+||+||||||.|+.|+|+||||||||.|+++
T Consensus 1 w~~PPG~eiYr~~~~sifEVdG~~~~~yCqnLcLlaKLFLd~Ktlyydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~ 80 (188)
T PF01853_consen 1 WRHPPGNEIYRDDNISIFEVDGAKHKLYCQNLCLLAKLFLDHKTLYYDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDN 80 (188)
T ss_dssp -SS-SSEEEEEETTEEEEEEETTTSHHHHHHHHHHHHTT-SSGCCTT-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-
T ss_pred CCCCCcCEEEECCCeEEEEEECCcCchHHHHHHHHHHHHhhCeEEEeecCceEEEEEEEecCccceeEEEEEEEecccCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCcccccccceeeecchhcccccCCCCCCCCcCChhhhhHHHhhhHHHHHHHHHcCCCC-CcCHHHHHHhc
Q psy8112 539 NNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGN-STTIKELSEMT 617 (687)
Q Consensus 539 ~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~~~G~PEkPLSdlG~~sY~sYW~~~il~~l~~~~~~-~~si~~is~~T 617 (687)
||||||||||||||||||+|||||||+|||+|+++|||||||||||++||+|||+.+|+++|.+..++ .+||+|||++|
T Consensus 81 ~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~~~G~PErPLSdlG~~sY~sYW~~~i~~~L~~~~~~~~isi~~is~~T 160 (188)
T PF01853_consen 81 NNLSCILTLPPYQRKGYGRFLIDFSYELSRREGKIGGPERPLSDLGRLSYRSYWRRVILEYLLEFKGKKSISIKDISQET 160 (188)
T ss_dssp EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTTS-BEE-SS--HHHHHHHHHHHHHHHHHHHHHTSSE--EEHHHHHHHH
T ss_pred eeEeehhhcchhhhcchhhhhhhhHHHHhhccCcCCCCcCccCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988775 79999999999
Q ss_pred CCcchhHHHHHHhcCcEEEeCCeEEEEe
Q psy8112 618 SIAQTDIISTLQAMNMVKYWKGQHVICV 645 (687)
Q Consensus 618 gi~~~Dii~tL~~l~~~~~~~g~~~i~~ 645 (687)
||.++||++||++|||+++++|+++|++
T Consensus 161 gi~~~DIi~tL~~l~~l~~~~~~~~i~~ 188 (188)
T PF01853_consen 161 GIRPEDIISTLQQLGMLKYYKGQHIICI 188 (188)
T ss_dssp -BTHHHHHHHHHHTT-EEEETTEEEEE-
T ss_pred CCCHHHHHHHHHHCCCEEEECCcEEEEC
Confidence 9999999999999999999999999974
No 8
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=100.00 E-value=2.2e-77 Score=585.97 Aligned_cols=178 Identities=63% Similarity=1.036 Sum_probs=156.4
Q ss_pred cCCCCCceeeecCCceEEEEeCCcchhhHhHhhhhhhccccccccccccCcceEEEEEEEcCCCcEEEEeecccccCCCC
Q psy8112 162 YCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDG 241 (687)
Q Consensus 162 ~r~PPG~eIYr~~~~sifEVDG~~~k~yCqnLcLlaKlFLdhKtlyydv~~FlFYvl~~~d~~g~h~vGyFSKEk~s~~~ 241 (687)
||||||+||||++++|||||||+++++|||||||||||||||||||||||+|+|||||+.|+.|+|+||||||||.|+++
T Consensus 1 w~~PPG~eiYr~~~~sifEVdG~~~~~yCqnLcLlaKLFLd~Ktlyydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~ 80 (188)
T PF01853_consen 1 WRHPPGNEIYRDDNISIFEVDGAKHKLYCQNLCLLAKLFLDHKTLYYDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDN 80 (188)
T ss_dssp -SS-SSEEEEEETTEEEEEEETTTSHHHHHHHHHHHHTT-SSGCCTT-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-
T ss_pred CCCCCcCEEEECCCeEEEEEECCcCchHHHHHHHHHHHHhhCeEEEeecCceEEEEEEEecCccceeEEEEEEEecccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEecCccccccccchhhhhhhhhhhhcCCCCCCCCCCChhhhhHHHhhhHHHHHHHhhcCCCCCCcccccccCCC
Q psy8112 242 NNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSNFFPFKPVVRTSSRS 321 (687)
Q Consensus 242 ~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~~G~PEkPLSdlG~~sY~sYW~~~i~~~L~~~~~~~~~~~~~~~~~S 321 (687)
||||||||||||||||||+|||+|||+|||+|+++|||||||||||++||+|||+++|+++|.+..... ...++++|..
T Consensus 81 ~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~~~G~PErPLSdlG~~sY~sYW~~~i~~~L~~~~~~~-~isi~~is~~ 159 (188)
T PF01853_consen 81 NNLSCILTLPPYQRKGYGRFLIDFSYELSRREGKIGGPERPLSDLGRLSYRSYWRRVILEYLLEFKGKK-SISIKDISQE 159 (188)
T ss_dssp EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTTS-BEE-SS--HHHHHHHHHHHHHHHHHHHHHTSSE---EEHHHHHHH
T ss_pred eeEeehhhcchhhhcchhhhhhhhHHHHhhccCcCCCCcCccCHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865422 3457899999
Q ss_pred CcccccccCCCceeehhhhhhhcchhH
Q psy8112 322 TRFPIECKKKPKLWICEFCLKYMTMER 348 (687)
Q Consensus 322 spyp~e~~~~~~~~iCe~CLKYMk~~~ 348 (687)
|..-.++ +..+|++|+..+
T Consensus 160 Tgi~~~D--------Ii~tL~~l~~l~ 178 (188)
T PF01853_consen 160 TGIRPED--------IISTLQQLGMLK 178 (188)
T ss_dssp H-BTHHH--------HHHHHHHTT-EE
T ss_pred HCCCHHH--------HHHHHHHCCCEE
Confidence 9988888 789999999874
No 9
>KOG2747|consensus
Probab=100.00 E-value=9.4e-48 Score=409.85 Aligned_cols=102 Identities=61% Similarity=1.101 Sum_probs=92.2
Q ss_pred ccCCCCcccccccCCCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchhhhhhhHHHhh
Q psy8112 317 TSSRSTRFPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKL 396 (687)
Q Consensus 317 ~~~~Sspyp~e~~~~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~ycqnlcl~~kl 396 (687)
.+=.+||||+|++++++|||||||||||+++++|.||+.+|.++||||+||||+|+||||||||+.+++|||||||||||
T Consensus 141 ~~WY~SPyP~e~~~~~~lYiCEfCLkY~~s~~~l~rH~~kC~~rhPPG~EIYR~~~iSvfEVDG~~~k~YCQnLCLlaKL 220 (396)
T KOG2747|consen 141 KTWYFSPYPEEYAKLDKLYICEFCLKYMKSRTSLQRHLKKCKLRHPPGNEIYRKGNISVFEVDGRKQKLYCQNLCLLAKL 220 (396)
T ss_pred eeeecCCCchhhccCCeEEEehHHHhHhchHHHHHHHHHhcCCCCCCcceeeecCCEEEEEecCcchhHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hccccceeeecCcceeEEEeee
Q psy8112 397 FLDHKTLYFDVDPFLFYILCVI 418 (687)
Q Consensus 397 fl~~kt~~~~~~~f~fy~~~~~ 418 (687)
||||||||||||||+|||||+.
T Consensus 221 FLdhKTLYyDvdpFlFYVlte~ 242 (396)
T KOG2747|consen 221 FLDHKTLYYDVDPFLFYVLTEC 242 (396)
T ss_pred HhcCceeEEeccceEEEEEEec
Confidence 8888888888777777776543
No 10
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=100.00 E-value=5.8e-46 Score=402.58 Aligned_cols=109 Identities=52% Similarity=0.973 Sum_probs=94.6
Q ss_pred ccccCCCCcccccccCCCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchhhhhhhHHH
Q psy8112 315 VRTSSRSTRFPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLA 394 (687)
Q Consensus 315 ~~~~~~Sspyp~e~~~~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~ycqnlcl~~ 394 (687)
.-++=..||||+|+.+.++||||||||+||++..+|.||+.+|.++||||+||||+++
T Consensus 179 ~i~~WY~SPyP~e~~~~~~lyiCe~Cl~y~~~~~~~~~H~~~C~~~~PPG~eIYr~~~---------------------- 236 (450)
T PLN00104 179 EIDTWYFSPFPPEYNDCSKLYFCEFCLKFMKRKEQLQRHMKKCDLKHPPGDEIYRHPT---------------------- 236 (450)
T ss_pred EeeeeecCCCChHHcCCCeEEEchhhhhhhcCHHHHHHHHhcCCCCCCCcCeEEEcCC----------------------
Confidence 3445678999999999999999999999999999999999999999999999999874
Q ss_pred hhhccccceeeecCcceeEEEeeecccCccccccccCcchhhhhhhhhccccccccccccCcccccCCCCceeeeeCCeE
Q psy8112 395 KLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSECTYCHPPGKEIYRCGNIS 474 (687)
Q Consensus 395 klfl~~kt~~~~~~~f~fy~~~~~~~~~~~~~y~~~~~~~f~~~~~~~~~~~~~~~yf~~~~C~~~~PPG~eiYr~~~~s 474 (687)
++.++|
T Consensus 237 --------------------------------------------------------------------------~~~~~s 242 (450)
T PLN00104 237 --------------------------------------------------------------------------RQEGLS 242 (450)
T ss_pred --------------------------------------------------------------------------CCceEE
Confidence 112267
Q ss_pred EEEEeCCccchhhhhhhhhhhhcccccccccccCCceEEEEEEec
Q psy8112 475 IYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVID 519 (687)
Q Consensus 475 vfEVDG~~~k~ycqnLcLlaKlFLdhKtl~ydv~~FlFYVl~e~d 519 (687)
||||||+++++||||||||||||||||||||||+||+||||||.|
T Consensus 243 i~EvDG~~~~~yCqnLcLlaKLFLdhKtlyydV~~FlFYvl~e~d 287 (450)
T PLN00104 243 MFEVDGKKNKVYCQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECD 287 (450)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhhcCcceeccccceEEEEEEEec
Confidence 777777777788888888888888899999999999999999976
No 11
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=100.00 E-value=1e-45 Score=380.94 Aligned_cols=100 Identities=52% Similarity=0.992 Sum_probs=75.6
Q ss_pred ccccCCCCcccccccCCCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeee---ecceeEEEecCCccchhhhhhh
Q psy8112 315 VRTSSRSTRFPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYR---CGNISIYEVDGSFHKLYCQNLC 391 (687)
Q Consensus 315 ~~~~~~Sspyp~e~~~~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr---~~~ls~~evdg~~~~~ycqnlc 391 (687)
.-++=..||||+|+.+.++|||||+||+||++..++.||+.+|+++||||+|||| +|++|||||||+.+++||||||
T Consensus 29 ~i~~WY~SPyP~e~~~~~~lyiCe~Clky~~~~~~l~~H~~~C~~r~PPG~eIYr~~~~~~~sifEVDG~~~~~yCqnLc 108 (290)
T PLN03238 29 EMDTWYYSPYPEPYASCTKLYICEYCLKYMRKKKSLLRHLAKCDIRQPPGGGIYGAVTEGPLSVFEVDGKKAKVYCQNLC 108 (290)
T ss_pred eeecCccCCCChHHcCCCeEEEcCCCcchhCCHHHHHHHHHhCCCCCCCcCEeEecCCCCcEEEEEEeCCcchhHHHHHH
Confidence 4456678999999999999999999999999999999999999999999999999 5666666666555555555555
Q ss_pred HHHhhhccccceeeecCcceeEE
Q psy8112 392 LLAKLFLDHKTLYFDVDPFLFYI 414 (687)
Q Consensus 392 l~~klfl~~kt~~~~~~~f~fy~ 414 (687)
|||||||||||||||||||+|||
T Consensus 109 LlaKLFLdhKtlyyDV~~FlFYV 131 (290)
T PLN03238 109 LLAKLFLDHKTLYYDVDPFLFYV 131 (290)
T ss_pred HHHHHhhcCccccccccceEEEE
Confidence 55555555444444444433333
No 12
>PTZ00064 histone acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-45 Score=398.31 Aligned_cols=104 Identities=46% Similarity=0.885 Sum_probs=86.0
Q ss_pred cccccccCCCCcccccccCCCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchhhhhhh
Q psy8112 312 KPVVRTSSRSTRFPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLC 391 (687)
Q Consensus 312 ~~~~~~~~~Sspyp~e~~~~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~ycqnlc 391 (687)
..-.-++=..||||+|+.+.++|||||||||||++..+|.||+.+|.++||||+||||++++|||||||+.+++||||||
T Consensus 258 G~yei~TWYfSPYP~Ey~~~d~LYICEfCLkY~~s~~~l~rH~~~C~~rhPPG~EIYR~~~iSifEVDG~~~klYCQNLC 337 (552)
T PTZ00064 258 GKFILDTWYFSPLPDEYQNVDTLHFCEYCLDFFCFEDELIRHLSRCQLRHPPGNEIYRKDNISVFEIDGALTRGYAENLC 337 (552)
T ss_pred CCeEecCCcCCCCChhhcCCCeEEEccchhhhhCCHHHHHHHHhcCCCCCCCCCeEEEeCCEEEEEEeCccchhHHHHHH
Confidence 33344556789999999999999999999999999999999999999999999999999988888888888877777777
Q ss_pred HHHhhhccccceeeecCcceeEEE
Q psy8112 392 LLAKLFLDHKTLYFDVDPFLFYIL 415 (687)
Q Consensus 392 l~~klfl~~kt~~~~~~~f~fy~~ 415 (687)
|||||||||||||||||||+||||
T Consensus 338 LLAKLFLDhKTLYyDVdpFlFYVL 361 (552)
T PTZ00064 338 YLAKLFLDHKTLQYDVEPFLFYIV 361 (552)
T ss_pred HHHHHhccCccccccccceEEEEE
Confidence 777766666666666555555554
No 13
>PLN03239 histone acetyltransferase; Provisional
Probab=100.00 E-value=7.4e-44 Score=375.39 Aligned_cols=104 Identities=47% Similarity=0.917 Sum_probs=83.1
Q ss_pred cccccccCCCCcccccccC----CCceeehhhhhhhcchhHHHHHHhcc---CcccCCCCceeeeecceeEEEecCCccc
Q psy8112 312 KPVVRTSSRSTRFPIECKK----KPKLWICEFCLKYMTMERTYRYHKSE---CTYCHPPGKEIYRCGNISIYEVDGSFHK 384 (687)
Q Consensus 312 ~~~~~~~~~Sspyp~e~~~----~~~~~iCe~CLKYMk~~~t~~~h~~~---c~~~~PPG~eIYr~~~ls~~evdg~~~~ 384 (687)
..-.-++=..||||+|+.+ .++|||||||||||++...+.||+.+ |.++||||+||||+|++|||||||+.++
T Consensus 80 G~y~i~tWYfSPyP~e~~~~~~~~~~lYiCE~Clky~~~~~~l~~H~~~~~~c~~~~PPG~eIYR~~~~sifEVDG~~~~ 159 (351)
T PLN03239 80 GPYQMDTWYFSPLPKELFKAGGFIDVLYVCEFSFGFFARKSELLRFQAKELPKERRHPPGNEIYRCGDLAMFEVDGFEER 159 (351)
T ss_pred CCeeecCCCCCCCcHHHhcccccCceEEEeccchhhhcCHHHHHHHHHhhccccCcCCCCCeEEEeCCEEEEEEeCccch
Confidence 3334455678999999975 68999999999999999999999987 9999999999999998888888888777
Q ss_pred hhhhhhhHHHhhhccccceeeecCcceeEEE
Q psy8112 385 LYCQNLCLLAKLFLDHKTLYFDVDPFLFYIL 415 (687)
Q Consensus 385 ~ycqnlcl~~klfl~~kt~~~~~~~f~fy~~ 415 (687)
+|||||||||||||||||||||||||+||||
T Consensus 160 ~yCQnLCLlaKLFLdhKtlyyDV~~FlFYVl 190 (351)
T PLN03239 160 IYCQNLCYIAKLFLDHKTLYFDVDPFLFYVL 190 (351)
T ss_pred HHHHHHHHHHHHhhcCcceeccccceEEEEE
Confidence 7777777766666666666655555444444
No 14
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=100.00 E-value=4.8e-42 Score=358.31 Aligned_cols=102 Identities=51% Similarity=0.992 Sum_probs=93.3
Q ss_pred cccCCCCcccccccCCCceeehhhhhhhcchhHHHHHHhccCcccCCCCceeeeecceeEEEecCCccchhhhhhhHHHh
Q psy8112 316 RTSSRSTRFPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAK 395 (687)
Q Consensus 316 ~~~~~Sspyp~e~~~~~~~~iCe~CLKYMk~~~t~~~h~~~c~~~~PPG~eIYr~~~ls~~evdg~~~~~ycqnlcl~~k 395 (687)
.+.-..||||++++...++|||||||+||.+.+++.||+.+|+++||||+||||++.||||||||+.+++||||||||||
T Consensus 140 iepwyfSpyp~~~s~~d~vyICefClkY~~s~~~~~rH~~kC~~~~pPG~eiYrD~~iS~~EiDG~~q~~~CrnLCLlsK 219 (395)
T COG5027 140 IEPWYFSPYPEEFSDLDIVYICEFCLKYYGSQTSLVRHRKKCSLQHPPGNEIYRDKYISFFEIDGRKQRLYCRNLCLLSK 219 (395)
T ss_pred cccccccCcchhhcccceEEEhhhhHHHhcchhHHHHHHhcCcCcCCCCceeeecCceEEEEEcCcchhhHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhccccceeeecCcceeEEEee
Q psy8112 396 LFLDHKTLYFDVDPFLFYILCV 417 (687)
Q Consensus 396 lfl~~kt~~~~~~~f~fy~~~~ 417 (687)
|||||||||||||||+|||||+
T Consensus 220 lFLd~KtLYyDVDpflFYvl~~ 241 (395)
T COG5027 220 LFLDHKTLYYDVDPFLFYVLTE 241 (395)
T ss_pred HHhcCceeEEeccceEEEEEEE
Confidence 8888888888888888887764
No 15
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=99.24 E-value=4.7e-12 Score=102.58 Aligned_cols=38 Identities=50% Similarity=0.865 Sum_probs=34.0
Q ss_pred CcEEEEeeecCCCCeeEEEEEecCcccccccccccccccc
Q psy8112 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMN 40 (687)
Q Consensus 1 ~AEILsiR~~~~~G~~eYYVHYvgfNKRLDEWVt~dRLdL 40 (687)
.|+||++|.. ++..+|||||.|.|||+||||+.++|+|
T Consensus 18 ~A~I~~~r~~--~~~~~YyVHY~g~nkR~DeWV~~~~i~l 55 (55)
T PF11717_consen 18 EAKILDIREK--NGEPEYYVHYQGWNKRLDEWVPESRIRL 55 (55)
T ss_dssp EEEEEEEEEC--TTCEEEEEEETTSTGCC-EEEETTTEEC
T ss_pred EEEEEEEEec--CCCEEEEEEcCCCCCCceeeecHHHccC
Confidence 4999999984 5789999999999999999999999985
No 16
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=96.41 E-value=0.0031 Score=49.71 Aligned_cols=40 Identities=20% Similarity=0.517 Sum_probs=34.2
Q ss_pred cEEEEeeecCCCCeeEEEEEecCccccccccccccccccc
Q psy8112 2 AEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNS 41 (687)
Q Consensus 2 AEILsiR~~~~~G~~eYYVHYvgfNKRLDEWVt~dRLdLs 41 (687)
++||+.|.....+..+|+|||.|++.+-|+|++.++|...
T Consensus 6 e~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 6 EKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred eeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCch
Confidence 5799999764227899999999999999999999999754
No 17
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=95.98 E-value=0.0052 Score=48.20 Aligned_cols=38 Identities=24% Similarity=0.649 Sum_probs=32.8
Q ss_pred cEEEEeeecCCCCeeEEEEEecCcccccccccccccccc
Q psy8112 2 AEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMN 40 (687)
Q Consensus 2 AEILsiR~~~~~G~~eYYVHYvgfNKRLDEWVt~dRLdL 40 (687)
++||+.|.. .++..+|+|||.|++.+.|.|++.++|..
T Consensus 5 ~~Il~~r~~-~~~~~~ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 5 EKILDHRWK-KKGELEYLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred heeeeeeec-CCCcEEEEEEECCCCCccCceeeHHHHHH
Confidence 689999943 25779999999999999999999998874
No 18
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=94.37 E-value=0.03 Score=46.17 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=38.8
Q ss_pred CcEEEEeecccccCC-----CCceeeEEEecCccccccccchhhhhhhhhhhhcCC
Q psy8112 225 GAHLVGYFSKEKESP-----DGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 275 (687)
Q Consensus 225 g~h~vGyFSKEk~s~-----~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~ 275 (687)
+..+||+.+=...+. ..-.+-.+.|.|.||++|+|+.|++..=+..+.+|.
T Consensus 4 ~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~ 59 (83)
T PF00583_consen 4 DGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGI 59 (83)
T ss_dssp TTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTE
T ss_pred CCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCc
Confidence 446788776443332 235588999999999999999999999888887553
No 19
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=94.23 E-value=0.066 Score=46.89 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=32.2
Q ss_pred EEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhh
Q psy8112 227 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELS 270 (687)
Q Consensus 227 h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls 270 (687)
.+|||..=+ .+..+.++.|.|.|||+|+|+.|++-.=+..
T Consensus 54 ~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~ 93 (117)
T PF13673_consen 54 EIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEA 93 (117)
T ss_dssp EEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHH
Confidence 899999865 2234999999999999999999999775544
No 20
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=93.73 E-value=0.056 Score=47.36 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=32.1
Q ss_pred EEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhcc
Q psy8112 524 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELS 567 (687)
Q Consensus 524 h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Ls 567 (687)
.+|||..=+ .+..+..+.|.|.|||+|+|+.|++..=...
T Consensus 54 ~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~ 93 (117)
T PF13673_consen 54 EIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEA 93 (117)
T ss_dssp EEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHH
Confidence 899999865 2344999999999999999999998765544
No 21
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=93.54 E-value=0.12 Score=47.11 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=35.5
Q ss_pred cEEEEeecccccCCC--C---ceeeEEEecCccccccccchhhhhhhhhhhhcC
Q psy8112 226 AHLVGYFSKEKESPD--G---NNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~--~---~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
..+|||.+-...... + -.|..+.|.|.|||+|+|+.|+++.=+.++..|
T Consensus 56 ~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~ 109 (144)
T PRK10146 56 GEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAG 109 (144)
T ss_pred CEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 379999874322111 1 136789999999999999999998877776554
No 22
>PRK07757 acetyltransferase; Provisional
Probab=93.09 E-value=0.14 Score=47.46 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=36.4
Q ss_pred cEEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhc
Q psy8112 226 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 273 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~e 273 (687)
..++||.+-.-.......+..+.|.|.|||+|+|+.|++..-+.++..
T Consensus 50 ~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~ 97 (152)
T PRK07757 50 GEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEAREL 97 (152)
T ss_pred CEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC
Confidence 379999875433322235778999999999999999998887776654
No 23
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=92.58 E-value=0.2 Score=44.28 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCcEEEeCCeEEE
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVI 643 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~~~~~~g~~~i 643 (687)
.|++.|.. |.++|+.+|+.+||.+.++|..+|+++-.+.|...+.||
T Consensus 28 ~LLr~LA~--G~PVt~~~LA~a~g~~~e~v~~~L~~~p~tEyD~~GrIV 74 (77)
T PF12324_consen 28 PLLRLLAK--GQPVTVEQLAAALGWPVEEVRAALAAMPDTEYDDQGRIV 74 (77)
T ss_dssp HHHHHHTT--TS-B-HHHHHHHHT--HHHHHHHHHH-TTSEEETTSEEE
T ss_pred HHHHHHHc--CCCcCHHHHHHHHCCCHHHHHHHHHhCCCceEcCCCCee
Confidence 46676654 889999999999999999999999999999999887776
No 24
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=92.03 E-value=0.042 Score=45.29 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=37.5
Q ss_pred cEEEEeecccccCC-----CCceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 523 AHLVGYFSKEKESP-----DGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 523 ~h~vGyFSKEK~s~-----~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
-.+||+.+=..... ..-.+..+.|.|.||++|+|+.|++..-+..+.++
T Consensus 5 ~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g 58 (83)
T PF00583_consen 5 GQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRG 58 (83)
T ss_dssp TEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcC
Confidence 46777765444433 34668889999999999999999999887777655
No 25
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=91.90 E-value=0.079 Score=35.16 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=20.7
Q ss_pred eEecchhhccCCHHHHHHHhcc
Q psy8112 138 WICEFCLKYMTMERTYRYHKSE 159 (687)
Q Consensus 138 yiCe~Cl~y~~~~~~~~~H~~~ 159 (687)
|.|+.|.+-|.++..|.+|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 7999999999999999999974
No 26
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=91.90 E-value=0.26 Score=48.33 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=34.4
Q ss_pred EEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhh
Q psy8112 227 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSK 271 (687)
Q Consensus 227 h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~ 271 (687)
.++||..=........++.-+.|.|.||+||||+.|++..=+.++
T Consensus 109 ~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~ 153 (191)
T TIGR02382 109 DPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCY 153 (191)
T ss_pred eEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 799987643333334578889999999999999999987655554
No 27
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=91.77 E-value=0.12 Score=47.15 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=34.5
Q ss_pred EEEEeecccccCC--CC---ceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 524 HLVGYFSKEKESP--DG---NNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 524 h~vGyFSKEK~s~--~~---~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
.+|||.+=..... .. -.|..+.|.|.|||+|+|+.|+++.=..++..|
T Consensus 57 ~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~ 109 (144)
T PRK10146 57 EVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAG 109 (144)
T ss_pred EEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7899987432211 11 237789999999999999999988766666543
No 28
>PHA01807 hypothetical protein
Probab=91.67 E-value=0.26 Score=48.05 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=35.0
Q ss_pred cEEEEeecccccCC----CCceeeEEEecCccccccccchhhhhhhhhhhhcC
Q psy8112 226 AHLVGYFSKEKESP----DGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 226 ~h~vGyFSKEk~s~----~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
..+|||.+=.-... .-..|..|.|+|.|||+|+|+.||+..-+.++..|
T Consensus 62 g~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G 114 (153)
T PHA01807 62 GKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGN 114 (153)
T ss_pred CEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 37899866321111 11234568999999999999999999988877654
No 29
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=91.23 E-value=0.32 Score=40.65 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=29.7
Q ss_pred cEEEEeecccccCCCCceeeEEEecCccccccccchhhhhh
Q psy8112 226 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFS 266 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fS 266 (687)
..++|+-.=..... ..-+..++|.|.||++|+|+.|++..
T Consensus 12 ~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~ 51 (79)
T PF13508_consen 12 GEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYL 51 (79)
T ss_dssp TEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHH
T ss_pred CEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHH
Confidence 46777766532222 34599999999999999999999876
No 30
>PRK10514 putative acetyltransferase; Provisional
Probab=91.22 E-value=0.24 Score=45.30 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=30.9
Q ss_pred EEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhh
Q psy8112 227 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYEL 269 (687)
Q Consensus 227 h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~L 269 (687)
.++|+.+=.. ..+..+.|.|.|||||+|+.|++...+.
T Consensus 60 ~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~ 97 (145)
T PRK10514 60 QPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSL 97 (145)
T ss_pred cEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHh
Confidence 8899887421 2356799999999999999999998764
No 31
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=91.00 E-value=0.43 Score=42.01 Aligned_cols=47 Identities=28% Similarity=0.368 Sum_probs=35.9
Q ss_pred cEEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhc
Q psy8112 226 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 273 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~e 273 (687)
..+|||..-.... ....+..+.|.|.|||+|+|+.|++..-+..+.+
T Consensus 40 ~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~ 86 (131)
T TIGR01575 40 GKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGR 86 (131)
T ss_pred CeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc
Confidence 3689998743322 2355889999999999999999999877666544
No 32
>PRK07757 acetyltransferase; Provisional
Probab=90.96 E-value=0.16 Score=47.17 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=34.2
Q ss_pred EEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhcccc
Q psy8112 524 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKV 569 (687)
Q Consensus 524 h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~ 569 (687)
.++||.+-.-.......+..+.|.|.||++|+|+-|++..-..++.
T Consensus 51 ~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~ 96 (152)
T PRK07757 51 EIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARE 96 (152)
T ss_pred EEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHh
Confidence 7999987644333334577899999999999999988776555543
No 33
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=90.55 E-value=0.39 Score=47.02 Aligned_cols=47 Identities=13% Similarity=0.301 Sum_probs=35.5
Q ss_pred EEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhc
Q psy8112 227 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 273 (687)
Q Consensus 227 h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~e 273 (687)
.++||.+=.........+..+.|.|.|||+|+|+.|+...=+.++..
T Consensus 112 ~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~ 158 (194)
T PRK10975 112 QIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQAR 158 (194)
T ss_pred CEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHc
Confidence 58898764433223356888889999999999999999887777643
No 34
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=90.07 E-value=0.25 Score=41.27 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=30.3
Q ss_pred cEEEEeecccccCCCCceeEEEEecCCcccccccceeeecc
Q psy8112 523 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFS 563 (687)
Q Consensus 523 ~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fS 563 (687)
..++|+..=.... +..-+..+.|.|.||++|+|+.||...
T Consensus 12 ~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~ 51 (79)
T PF13508_consen 12 GEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYL 51 (79)
T ss_dssp TEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHH
T ss_pred CEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHH
Confidence 4677776654333 256799999999999999999998875
No 35
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=89.82 E-value=0.63 Score=43.06 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.5
Q ss_pred EEecCccccccccchhhhhhhhhhhhcC
Q psy8112 247 ILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 247 Il~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
|.|.|.||++|+|+.|++..-+.++..|
T Consensus 91 i~V~~~~rg~GiG~~ll~~~~~~a~~~g 118 (150)
T PLN02706 91 VVVDSAARGKGLGKKIIEALTEHARSAG 118 (150)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999888876543
No 36
>PRK09831 putative acyltransferase; Provisional
Probab=89.66 E-value=0.35 Score=45.05 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=31.1
Q ss_pred cEEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhh
Q psy8112 226 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYEL 269 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~L 269 (687)
.+++||.+=. ...+.-+.|.|.|||+|+|+.|++..-+.
T Consensus 62 ~~iiG~~~~~-----~~~i~~~~v~p~~~g~GiG~~Ll~~~~~~ 100 (147)
T PRK09831 62 AQPVGFITCI-----EHYIDMLFVDPEYTRRGVASALLKPLIKS 100 (147)
T ss_pred CEEEEEEEeh-----hceeeeEEECHHHcCCCHHHHHHHHHHHH
Confidence 4899997743 14678899999999999999998776443
No 37
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=89.54 E-value=0.26 Score=44.14 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=29.1
Q ss_pred ceeeEEEecCccccccccchhhhhhhhhhhhcCC
Q psy8112 242 NNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 275 (687)
Q Consensus 242 ~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~ 275 (687)
..++.++|.|.|||+|+|+.|++...+-.+.+|.
T Consensus 73 ~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~ 106 (127)
T PF13527_consen 73 AYIGDVAVDPEYRGRGLGRQLMRALLERARERGV 106 (127)
T ss_dssp EEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 5689999999999999999999999998887665
No 38
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=89.17 E-value=0.29 Score=47.95 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=31.3
Q ss_pred EEEEeecccccCCCCceeEEEEecCCcccccccceeeecch
Q psy8112 524 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSY 564 (687)
Q Consensus 524 h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY 564 (687)
.++||..=........++.-|.|.|.||+||||+-|++.-=
T Consensus 109 ~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~ 149 (191)
T TIGR02382 109 DPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTAL 149 (191)
T ss_pred eEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 69998765433333467888999999999999998877543
No 39
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=89.12 E-value=0.44 Score=55.67 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=40.9
Q ss_pred EEEEEEEcCCCcEEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhcC
Q psy8112 215 FYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 215 FYvl~~~d~~g~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
|||+.+ | .+++||-.=...+....-+..|.|.|.|||+|+|+.|++..-+.++..|
T Consensus 505 ~~Va~~-~---g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g 560 (614)
T PRK12308 505 FAVAEH-H---GEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMA 560 (614)
T ss_pred EEEEEE-C---CEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 566543 2 3799997643332222358899999999999999999999888887654
No 40
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=89.09 E-value=0.97 Score=38.27 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchh---HHHHHHhcCcEEEeC
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTD---IISTLQAMNMVKYWK 638 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~D---ii~tL~~l~~~~~~~ 638 (687)
..|+++|....+..+|..|||+++||+... ++.+|+..|+|....
T Consensus 9 ~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~ 56 (68)
T smart00550 9 EKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQG 56 (68)
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 578899988755469999999999999755 567888999998754
No 41
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=88.87 E-value=0.78 Score=47.72 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=39.5
Q ss_pred cceEEEEEEEcCCCcEEEEeecccccCCC-CceeeEEEecCccccccccchhhhhhhhhhhhc
Q psy8112 212 PFLFYILCVIDKYGAHLVGYFSKEKESPD-GNNVACILTLPPYQRQGYGKFLISFSYELSKVE 273 (687)
Q Consensus 212 ~FlFYvl~~~d~~g~h~vGyFSKEk~s~~-~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~e 273 (687)
...|+|+.. +..+||+-+=+..... ...+.-+.|.|.|||+|+|+.|++..=+..+..
T Consensus 157 ~~~~~v~~~----~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~ 215 (266)
T TIGR03827 157 NVVYFGVED----GGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEK 215 (266)
T ss_pred CcEEEEEEE----CCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC
Confidence 344555543 2379999875322221 234777899999999999999999886655543
No 42
>PHA01807 hypothetical protein
Probab=88.77 E-value=0.27 Score=47.96 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=34.5
Q ss_pred cEEEEeecccccC----CCCceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 523 AHLVGYFSKEKES----PDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 523 ~h~vGyFSKEK~s----~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
..+|||.+=.-.. ..-..|..|.|+|.|||+|+|+.||+.--...|..|
T Consensus 62 g~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G 114 (153)
T PHA01807 62 GKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGN 114 (153)
T ss_pred CEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 3788886642111 111234568999999999999999999888777543
No 43
>PTZ00330 acetyltransferase; Provisional
Probab=88.73 E-value=0.87 Score=41.57 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=32.0
Q ss_pred cEEEEeecccccCC---CCce---eeEEEecCccccccccchhhhhhhhhhhhc
Q psy8112 226 AHLVGYFSKEKESP---DGNN---VACILTLPPYQRQGYGKFLISFSYELSKVE 273 (687)
Q Consensus 226 ~h~vGyFSKEk~s~---~~~N---LaCIl~lP~yQrkGyG~lLI~fSY~Ls~~e 273 (687)
..+|||-+=-.... .+.+ +.=+.|.|.|||+|+|+.|+...-+.++..
T Consensus 61 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~ 114 (147)
T PTZ00330 61 QRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSS 114 (147)
T ss_pred CEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC
Confidence 37899975211111 1112 222899999999999999999877766643
No 44
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=88.56 E-value=0.62 Score=37.06 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=32.5
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEE
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKY 636 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~ 636 (687)
.|+++|.... ..+|+.|||++||+.. .-++.||.+.|++..
T Consensus 7 ~iL~~l~~~~-~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 7 RILEALAESG-GPLTLSEIARALGLPKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHCHHCTB-SCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeec
Confidence 4666676654 4589999999999985 788999999999975
No 45
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=88.52 E-value=0.68 Score=34.38 Aligned_cols=46 Identities=24% Similarity=0.439 Sum_probs=33.6
Q ss_pred cEEEEeecccccC--CCCceeeEEEecCccccccccchhhhhhhhhhh
Q psy8112 226 AHLVGYFSKEKES--PDGNNVACILTLPPYQRQGYGKFLISFSYELSK 271 (687)
Q Consensus 226 ~h~vGyFSKEk~s--~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~ 271 (687)
.+++||++=-... ...-.+.-+.|.|+||++|+|+.|+...=+..+
T Consensus 8 ~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~ 55 (65)
T cd04301 8 GEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEAR 55 (65)
T ss_pred CEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHH
Confidence 4789998844333 223456678999999999999999987655544
No 46
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=87.99 E-value=0.32 Score=31.62 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.5
Q ss_pred eEecchhhccCCHHHHHHHhcc
Q psy8112 138 WICEFCLKYMTMERTYRYHKSE 159 (687)
Q Consensus 138 yiCe~Cl~y~~~~~~~~~H~~~ 159 (687)
|.|+.|.+-|.+...|++|+..
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 7899999999999999999864
No 47
>PLN02825 amino-acid N-acetyltransferase
Probab=87.82 E-value=0.7 Score=53.36 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=41.8
Q ss_pred eEEEEEEEcCCCcEEEEeecccccC-CCCceeeEEEecCccccccccchhhhhhhhhhhhcCC
Q psy8112 214 LFYILCVIDKYGAHLVGYFSKEKES-PDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 275 (687)
Q Consensus 214 lFYvl~~~d~~g~h~vGyFSKEk~s-~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~ 275 (687)
.|||+ +.|. .++|+..-.... ...-.++|+.|.|.|||+|+|+.|++..-+.++..|.
T Consensus 408 ~f~V~-e~Dg---~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~ 466 (515)
T PLN02825 408 SFVVV-EREG---SIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGL 466 (515)
T ss_pred cEEEE-EECC---EEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 36665 4442 688876532211 1224699999999999999999999999888886654
No 48
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=87.72 E-value=0.39 Score=47.04 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=33.3
Q ss_pred EEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhccc
Q psy8112 524 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSK 568 (687)
Q Consensus 524 h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr 568 (687)
.+||+.+=.........+..+.|.|.||++|+|+.|+...=..++
T Consensus 112 ~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~ 156 (194)
T PRK10975 112 QIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQ 156 (194)
T ss_pred CEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHH
Confidence 588987654433334568888899999999999998877655544
No 49
>PRK10514 putative acetyltransferase; Provisional
Probab=87.49 E-value=0.38 Score=44.07 Aligned_cols=37 Identities=16% Similarity=0.396 Sum_probs=30.0
Q ss_pred EEEEeecccccCCCCceeEEEEecCCcccccccceeeecchh
Q psy8112 524 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYE 565 (687)
Q Consensus 524 h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~ 565 (687)
.++|+.+=.. ..+..+.|.|.||+||+|+.|+++...
T Consensus 60 ~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~ 96 (145)
T PRK10514 60 QPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALS 96 (145)
T ss_pred cEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHH
Confidence 8899887422 336689999999999999999988775
No 50
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=87.49 E-value=0.47 Score=41.78 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=33.6
Q ss_pred cEEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhccc
Q psy8112 523 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSK 568 (687)
Q Consensus 523 ~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr 568 (687)
..+|||..-.... ....+..+.|.|.||++|+|+.|+...-+..+
T Consensus 40 ~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~ 84 (131)
T TIGR01575 40 GKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAK 84 (131)
T ss_pred CeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 3689998744332 34568889999999999999998876554444
No 51
>PRK09831 putative acyltransferase; Provisional
Probab=87.02 E-value=0.42 Score=44.55 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=29.6
Q ss_pred cEEEEeecccccCCCCceeEEEEecCCcccccccceeeecch
Q psy8112 523 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSY 564 (687)
Q Consensus 523 ~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY 564 (687)
-+++|+.+=. ...+.-+.|.|.||++|+|+.|++..-
T Consensus 62 ~~iiG~~~~~-----~~~i~~~~v~p~~~g~GiG~~Ll~~~~ 98 (147)
T PRK09831 62 AQPVGFITCI-----EHYIDMLFVDPEYTRRGVASALLKPLI 98 (147)
T ss_pred CEEEEEEEeh-----hceeeeEEECHHHcCCCHHHHHHHHHH
Confidence 4899997643 246888999999999999999976543
No 52
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=86.48 E-value=1.1 Score=41.24 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=29.0
Q ss_pred cEEEEeecccccC-CC-C--ceeeEEEecCccccccccchhhhhhhhhh
Q psy8112 226 AHLVGYFSKEKES-PD-G--NNVACILTLPPYQRQGYGKFLISFSYELS 270 (687)
Q Consensus 226 ~h~vGyFSKEk~s-~~-~--~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls 270 (687)
.+++|+.+=-... +. . ..++ |.|.|.|||+|+|+.|++.-=..+
T Consensus 60 ~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~ 107 (162)
T PRK10140 60 GDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMC 107 (162)
T ss_pred CEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHH
Confidence 3799996632111 11 1 2344 789999999999999997653333
No 53
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=86.45 E-value=0.37 Score=42.24 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.0
Q ss_pred ceeeEEEecCccccccccchhhh
Q psy8112 242 NNVACILTLPPYQRQGYGKFLIS 264 (687)
Q Consensus 242 ~NLaCIl~lP~yQrkGyG~lLI~ 264 (687)
-.+..+.|+|.|||||||+.|+.
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~ 44 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVA 44 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHH
T ss_pred cEEEEEEECHHHcCCCHHHHHHH
Confidence 56999999999999999999884
No 54
>PRK07922 N-acetylglutamate synthase; Validated
Probab=86.42 E-value=1.2 Score=43.28 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=36.2
Q ss_pred cEEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhcC
Q psy8112 226 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
..++||-+-.....+.--+..+.|-|.||++|+|+.|++..=+.++..|
T Consensus 55 ~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g 103 (169)
T PRK07922 55 GEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELG 103 (169)
T ss_pred CcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3689985533322223457789999999999999999999877777554
No 55
>PRK03624 putative acetyltransferase; Provisional
Probab=86.24 E-value=1.3 Score=39.33 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=30.8
Q ss_pred EEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhh
Q psy8112 227 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKV 272 (687)
Q Consensus 227 h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~ 272 (687)
.+||+-.=.- ..+..-+.-+.|.|.|||+|+|+.|++..=+..+.
T Consensus 55 ~~vG~~~~~~-~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~ 99 (140)
T PRK03624 55 EVVGTVMGGY-DGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIA 99 (140)
T ss_pred cEEEEEEeec-cCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHH
Confidence 6888854211 11113355577899999999999999987665554
No 56
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=85.98 E-value=0.49 Score=37.12 Aligned_cols=29 Identities=28% Similarity=0.628 Sum_probs=24.7
Q ss_pred EEecCccccccccchhhhhhhhhhhhcCC
Q psy8112 247 ILTLPPYQRQGYGKFLISFSYELSKVEGL 275 (687)
Q Consensus 247 Il~lP~yQrkGyG~lLI~fSY~Ls~~eg~ 275 (687)
+.|.|.||++|+|+.|++...+.++..|.
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~ 115 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGI 115 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCc
Confidence 99999999999999999977777776443
No 57
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=85.85 E-value=1.6 Score=40.28 Aligned_cols=44 Identities=25% Similarity=0.500 Sum_probs=31.7
Q ss_pred cEEEEeecccccCCCCce--eeEEEecCccccccccchhhhhhhhhh
Q psy8112 226 AHLVGYFSKEKESPDGNN--VACILTLPPYQRQGYGKFLISFSYELS 270 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~~~N--LaCIl~lP~yQrkGyG~lLI~fSY~Ls 270 (687)
..++||.+=....+.+.+ ++ +++.|.||++|+|+.|+++.-..+
T Consensus 60 g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~a 105 (155)
T PF13420_consen 60 GKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYA 105 (155)
T ss_dssp TEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHh
Confidence 469999875544433222 33 446699999999999999887766
No 58
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=85.77 E-value=0.47 Score=55.47 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=39.9
Q ss_pred EEEEEEecCCCcEEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 512 FYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 512 FYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
|||+.+. -++|||..=........-+..|.|.|.|||+|+|+.|++..-..++..|
T Consensus 505 ~~Va~~~----g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g 560 (614)
T PRK12308 505 FAVAEHH----GEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMA 560 (614)
T ss_pred EEEEEEC----CEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 5665542 3799997644333222458899999999999999999998776665443
No 59
>KOG3216|consensus
Probab=85.47 E-value=0.47 Score=47.01 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=42.9
Q ss_pred hhccccccccccccCcceEEEEEEEcCCCcEEEEee--cccccCCC---CceeeEEEecCccccccccchhhhhhhhhhh
Q psy8112 197 AKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYF--SKEKESPD---GNNVACILTLPPYQRQGYGKFLISFSYELSK 271 (687)
Q Consensus 197 aKlFLdhKtlyydv~~FlFYvl~~~d~~g~h~vGyF--SKEk~s~~---~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~ 271 (687)
.-+|+|++.- .++|+ +.+..|..++||= =---.+|. .-=|-=|-|-|+|||||+|+.||.+=|+.+.
T Consensus 43 ~~~F~d~~~~-------~~~v~-~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~ 114 (163)
T KOG3216|consen 43 RDGFIDPPFK-------HWLVA-AIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEAD 114 (163)
T ss_pred hhhccCCCcc-------EEEEE-EEecCCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHH
Confidence 3457776542 23333 3344477777751 11112222 1235568899999999999999999999887
Q ss_pred h
Q psy8112 272 V 272 (687)
Q Consensus 272 ~ 272 (687)
+
T Consensus 115 ~ 115 (163)
T KOG3216|consen 115 K 115 (163)
T ss_pred H
Confidence 4
No 60
>PRK05279 N-acetylglutamate synthase; Validated
Probab=85.28 E-value=1.1 Score=50.17 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=37.1
Q ss_pred EEEEeecccccCC-CCceeeEEEecCccccccccchhhhhhhhhhhhcC
Q psy8112 227 HLVGYFSKEKESP-DGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 227 h~vGyFSKEk~s~-~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
.++||.+-..... ...-+.++.|.|.|||+|+|+.|++..-+.++..|
T Consensus 344 ~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g 392 (441)
T PRK05279 344 LIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLG 392 (441)
T ss_pred EEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7899875433322 22458999999999999999999999888877654
No 61
>PRK13688 hypothetical protein; Provisional
Probab=85.18 E-value=0.94 Score=44.17 Aligned_cols=23 Identities=39% Similarity=0.840 Sum_probs=21.2
Q ss_pred eeeEEEecCccccccccchhhhh
Q psy8112 243 NVACILTLPPYQRQGYGKFLISF 265 (687)
Q Consensus 243 NLaCIl~lP~yQrkGyG~lLI~f 265 (687)
-|..+.|.|.|||+|+|+.|++.
T Consensus 81 ~L~~l~V~p~~rgkGiG~~Ll~~ 103 (156)
T PRK13688 81 ELWKLEVLPKYQNRGYGEMLVDF 103 (156)
T ss_pred EEEEEEECHHHcCCCHHHHHHHH
Confidence 48899999999999999999984
No 62
>KOG2696|consensus
Probab=84.41 E-value=1.6 Score=48.59 Aligned_cols=96 Identities=25% Similarity=0.383 Sum_probs=64.0
Q ss_pred hhhHhHhhhhhhccccccccccccC-cceEEEEEEEc-CCC---cEEEEeecccccC--CCC--ceeeEEEecCcccccc
Q psy8112 187 KLYCQNLCLLAKLFLDHKTLYFDVD-PFLFYILCVID-KYG---AHLVGYFSKEKES--PDG--NNVACILTLPPYQRQG 257 (687)
Q Consensus 187 k~yCqnLcLlaKlFLdhKtlyydv~-~FlFYvl~~~d-~~g---~h~vGyFSKEk~s--~~~--~NLaCIl~lP~yQrkG 257 (687)
..+=..|=-|+-||++-=+..+..+ ..+.|.+.|.- .+| +|++||.-==|-- .++ -=+|=|++|||||++|
T Consensus 154 ~~~~~Rlqt~~llFie~~~~id~tde~w~~~lv~EK~~~d~~~ly~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~G 233 (403)
T KOG2696|consen 154 RLFHERLQTFSLLFIEAASYIDNTDECWLIYLVYEKKEEDGDTLYAYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKG 233 (403)
T ss_pred HHHHHhHHHHHHHHHhhcchhccCCCceEEEEeeeecccCCceeEeeeeeEEEeehhhhhhhhhhhhheeEEeccccCCc
Confidence 4667788889999999888777654 56778888876 333 5788876522211 111 2278899999999999
Q ss_pred ccchhhhhhhhhhhhcCCC--CCCCCC
Q psy8112 258 YGKFLISFSYELSKVEGLI--GSPEKP 282 (687)
Q Consensus 258 yG~lLI~fSY~Ls~~eg~~--G~PEkP 282 (687)
.|.-|.+-=+.=...+..+ +|=|-|
T Consensus 234 lgs~l~E~i~r~~~~~p~v~DiTVEdP 260 (403)
T KOG2696|consen 234 LGSQLYEAIARDYLEEPTVLDITVEDP 260 (403)
T ss_pred hHHHHHHHHHHhhccCCceeEEEecCc
Confidence 9998887644333333332 455544
No 63
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=84.23 E-value=0.84 Score=42.22 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.0
Q ss_pred EEecCCcccccccceeeecchhcccc
Q psy8112 544 ILTLPPYQRQGYGKFLISFSYELSKV 569 (687)
Q Consensus 544 Il~lP~yQrkGyG~~LI~fSY~Lsr~ 569 (687)
|.|.|.||++|+|+.|+...-+.++.
T Consensus 91 i~V~~~~rg~GiG~~ll~~~~~~a~~ 116 (150)
T PLN02706 91 VVVDSAARGKGLGKKIIEALTEHARS 116 (150)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHH
Confidence 88999999999999998877666653
No 64
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=84.05 E-value=0.63 Score=34.55 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=31.7
Q ss_pred cEEEEeecccccC--CCCceeEEEEecCCcccccccceeeecchhc
Q psy8112 523 AHLVGYFSKEKES--PDGNNVACILTLPPYQRQGYGKFLISFSYEL 566 (687)
Q Consensus 523 ~h~vGyFSKEK~s--~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~L 566 (687)
-+++||++=-... ...-.+.-+.|.|.||++|+|+.|+...-..
T Consensus 8 ~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~ 53 (65)
T cd04301 8 GEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEE 53 (65)
T ss_pred CEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHH
Confidence 3788888754443 2345566789999999999999888764433
No 65
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=83.77 E-value=2.4 Score=33.99 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeC
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWK 638 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~ 638 (687)
..||.+|....+..+|+.||++.+++++ .-++..|++.|+|....
T Consensus 8 ~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 8 FRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 3567777777776799999999999996 56788889999987543
No 66
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=83.72 E-value=0.94 Score=47.11 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=36.4
Q ss_pred ceEEEEEEecCCCcEEEEeecccccCC-CCceeEEEEecCCcccccccceeeecchhccc
Q psy8112 510 FLFYILCVIDKYGAHLVGYFSKEKESP-DGNNVACILTLPPYQRQGYGKFLISFSYELSK 568 (687)
Q Consensus 510 FlFYVl~e~d~~g~h~vGyFSKEK~s~-~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr 568 (687)
..|+|+.. +..+||+.+=+.... ....+.-+.|.|.||++|+|+.|++..=...+
T Consensus 158 ~~~~v~~~----~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~ 213 (266)
T TIGR03827 158 VVYFGVED----GGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMK 213 (266)
T ss_pred cEEEEEEE----CCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 44555543 237999987532221 22347778999999999999999876544333
No 67
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=83.69 E-value=0.59 Score=37.60 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=24.5
Q ss_pred CcCHHHHHHhcCCcchhHHHHH-HhcCcE
Q psy8112 607 STTIKELSEMTSIAQTDIISTL-QAMNMV 634 (687)
Q Consensus 607 ~~si~~is~~Tgi~~~Dii~tL-~~l~~~ 634 (687)
.++|.|||++.|+.+.|||..| +.+|+.
T Consensus 3 ~i~V~elAk~l~v~~~~ii~~l~~~~Gi~ 31 (54)
T PF04760_consen 3 KIRVSELAKELGVPSKEIIKKLFKELGIM 31 (54)
T ss_dssp EE-TTHHHHHHSSSHHHHHHHH-HHHTS-
T ss_pred ceEHHHHHHHHCcCHHHHHHHHHHhCCcC
Confidence 5899999999999999999999 669997
No 68
>PRK10562 putative acetyltransferase; Provisional
Probab=83.67 E-value=1.3 Score=40.98 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=31.6
Q ss_pred EEEEEEEcCCCcEEEEeecccccCCCCceeeEEEecCccccccccchhhhhh
Q psy8112 215 FYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFS 266 (687)
Q Consensus 215 FYvl~~~d~~g~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fS 266 (687)
++|++.. | .++||.+=-. ...+.-+.|.|.||++|||+.|++..
T Consensus 50 ~~v~~~~---~-~~iG~~~~~~----~~~i~~~~v~~~~rg~G~g~~ll~~~ 93 (145)
T PRK10562 50 TWVWEED---G-KLLGFVSVLE----GRFVGALFVAPKAVRRGIGKALMQHV 93 (145)
T ss_pred EEEEEEC---C-EEEEEEEEee----ccEEEEEEECHHHcCCCHHHHHHHHH
Confidence 5666542 2 6889875311 13466689999999999999999866
No 69
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=83.58 E-value=2 Score=40.36 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=35.4
Q ss_pred EEEEeecccccCCC-----CceeeEEEecCccccccccchhhhhhhhhhhhcC
Q psy8112 227 HLVGYFSKEKESPD-----GNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 227 h~vGyFSKEk~s~~-----~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
.++||-.-...-.. .--+..|-|-|.|||+|+|+.|++..-+..+..+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~ 124 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERG 124 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcC
Confidence 58888766421111 2469999999999999999999998776665443
No 70
>PLN02825 amino-acid N-acetyltransferase
Probab=83.41 E-value=0.75 Score=53.15 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=38.8
Q ss_pred EEEEEEecCCCcEEEEeeccccc-CCCCceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 512 FYILCVIDKYGAHLVGYFSKEKE-SPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 512 FYVl~e~d~~g~h~vGyFSKEK~-s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
|||+ +.|. .++||.+-... ....-.++||.|.|.||++|+|+.|++..-..++..|
T Consensus 409 f~V~-e~Dg---~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G 465 (515)
T PLN02825 409 FVVV-EREG---SIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLG 465 (515)
T ss_pred EEEE-EECC---EEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 6665 4443 67777653221 1123569999999999999999999988776665443
No 71
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=83.30 E-value=0.33 Score=43.46 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=28.7
Q ss_pred ceeEEEEecCCcccccccceeeecchhcccccCC
Q psy8112 539 NNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 572 (687)
Q Consensus 539 ~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~~ 572 (687)
..++.++|.|.|||+|+|+.|++...+-.+.+|.
T Consensus 73 ~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~ 106 (127)
T PF13527_consen 73 AYIGDVAVDPEYRGRGLGRQLMRALLERARERGV 106 (127)
T ss_dssp EEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 5688999999999999999999999888877654
No 72
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=83.18 E-value=2 Score=44.43 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=31.5
Q ss_pred cEEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhh
Q psy8112 226 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYE 268 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~ 268 (687)
.++|||-.--.......-+.-|.|.|.|||+|+|+.|++..=+
T Consensus 55 ~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~ 97 (292)
T TIGR03448 55 DPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLA 97 (292)
T ss_pred CEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHH
Confidence 3799997633222222347789999999999999999998743
No 73
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=83.12 E-value=1.8 Score=34.51 Aligned_cols=38 Identities=21% Similarity=0.546 Sum_probs=31.8
Q ss_pred EEEEeeecCCCCe--eEEEEEecCccccccccccccccccc
Q psy8112 3 EIIQNRYNELENC--FEYYVHYDGFNRRLDEWVQKHRIMNS 41 (687)
Q Consensus 3 EILsiR~~~~~G~--~eYYVHYvgfNKRLDEWVt~dRLdLs 41 (687)
+||+.|..+ ++. .+|.|+|.|+...-+.|++.+.|...
T Consensus 5 ~Il~~r~~~-~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~ 44 (55)
T PF00385_consen 5 RILDHRVVK-GGNKVYEYLVKWKGYPYSENTWEPEENLKNC 44 (55)
T ss_dssp EEEEEEEET-TEESEEEEEEEETTSSGGGEEEEEGGGCSSH
T ss_pred EEEEEEEeC-CCcccEEEEEEECCCCCCCCeEeeHHHHhHh
Confidence 689999764 333 59999999999999999999988754
No 74
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=82.86 E-value=2.9 Score=32.37 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchh---HHHHHHhcCcEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTD---IISTLQAMNMVK 635 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~D---ii~tL~~l~~~~ 635 (687)
..|+.+|.+.. .+|..|||+.+||+..= .+.-|+..|+|+
T Consensus 6 ~~Il~~l~~~~--~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 6 RKILNYLRENP--RITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHCT--TS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcC--CCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 46778887743 49999999999999654 455555666653
No 75
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=82.74 E-value=1.1 Score=41.26 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=26.0
Q ss_pred cEEEEeecccccC-C---CCceeEEEEecCCcccccccceeeec
Q psy8112 523 AHLVGYFSKEKES-P---DGNNVACILTLPPYQRQGYGKFLISF 562 (687)
Q Consensus 523 ~h~vGyFSKEK~s-~---~~~NLsCIl~lP~yQrkGyG~~LI~f 562 (687)
..+||+.+=-... + ....++ |.|.|.||++|+|+.|++.
T Consensus 60 ~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~ 102 (162)
T PRK10140 60 GDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMRE 102 (162)
T ss_pred CEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHH
Confidence 3799996532211 1 112344 7899999999999987753
No 76
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=82.68 E-value=1.9 Score=44.50 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=31.3
Q ss_pred cEEEEeecccccC--CCCceeeEEEecCccccccccchhhhhhhhhhhh
Q psy8112 226 AHLVGYFSKEKES--PDGNNVACILTLPPYQRQGYGKFLISFSYELSKV 272 (687)
Q Consensus 226 ~h~vGyFSKEk~s--~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~ 272 (687)
..+|||..-.... .....+..+.|.|.|||+|+|+.|+...=...+.
T Consensus 209 ~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~ 257 (292)
T TIGR03448 209 GELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAA 257 (292)
T ss_pred CcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHH
Confidence 3699986322111 1123456678999999999999999865554443
No 77
>PTZ00330 acetyltransferase; Provisional
Probab=82.66 E-value=1.1 Score=41.02 Aligned_cols=45 Identities=33% Similarity=0.448 Sum_probs=29.1
Q ss_pred EEEEeecccccCC---CCceeE---EEEecCCcccccccceeeecchhccc
Q psy8112 524 HLVGYFSKEKESP---DGNNVA---CILTLPPYQRQGYGKFLISFSYELSK 568 (687)
Q Consensus 524 h~vGyFSKEK~s~---~~~NLs---CIl~lP~yQrkGyG~~LI~fSY~Lsr 568 (687)
.+|||-+=-.... .+.+.+ =+.|.|.|||+|+|+.|+...-..++
T Consensus 62 ~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~ 112 (147)
T PTZ00330 62 RIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIAR 112 (147)
T ss_pred EEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 7899975321111 112222 28999999999999999876555444
No 78
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=82.62 E-value=0.42 Score=41.85 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.0
Q ss_pred ceeEEEEecCCcccccccceee
Q psy8112 539 NNVACILTLPPYQRQGYGKFLI 560 (687)
Q Consensus 539 ~NLsCIl~lP~yQrkGyG~~LI 560 (687)
-.+..+.|+|.|||||||+.|+
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv 43 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALV 43 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHH
T ss_pred cEEEEEEECHHHcCCCHHHHHH
Confidence 6799999999999999998765
No 79
>PRK13239 alkylmercury lyase; Provisional
Probab=82.49 E-value=2.3 Score=43.96 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCcEEEeCC
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMVKYWKG 639 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~~~~~~g 639 (687)
.|++.|. .|..+|+++|++.||.+.+.|-.+|++|..+.|...
T Consensus 26 ~llr~la--~G~pvt~~~lA~~~~~~~~~v~~~L~~l~~~~~d~~ 68 (206)
T PRK13239 26 PLLRLLA--KGRPVSVTTLAAALGWPVEEVEAVLEAMPDTEYDED 68 (206)
T ss_pred HHHHHHH--cCCCCCHHHHHHHhCCCHHHHHHHHHhCCCeEECCC
Confidence 4555565 688999999999999999999999999999887654
No 80
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=82.44 E-value=2.1 Score=38.93 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcC
Q psy8112 593 SWVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMN 632 (687)
Q Consensus 593 ~~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~ 632 (687)
+..|+.+|.+.-++..++.|||..||+.+..|+-+|.-+|
T Consensus 11 R~~vl~~L~~~yp~~~~~~eIar~v~~~~snV~GaL~G~g 50 (90)
T PF07381_consen 11 RKKVLEYLCSIYPEPAYPSEIARSVGSDYSNVLGALRGDG 50 (90)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHCCCHHHHHHHHhcCC
Confidence 4578999998878889999999999999999999988766
No 81
>PRK13688 hypothetical protein; Provisional
Probab=82.03 E-value=0.94 Score=44.17 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=20.6
Q ss_pred ceeEEEEecCCcccccccceeee
Q psy8112 539 NNVACILTLPPYQRQGYGKFLIS 561 (687)
Q Consensus 539 ~NLsCIl~lP~yQrkGyG~~LI~ 561 (687)
.-|..+.|.|.|||+|+|+.|++
T Consensus 80 ~~L~~l~V~p~~rgkGiG~~Ll~ 102 (156)
T PRK13688 80 LELWKLEVLPKYQNRGYGEMLVD 102 (156)
T ss_pred EEEEEEEECHHHcCCCHHHHHHH
Confidence 35889999999999999999875
No 82
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=82.01 E-value=3.5 Score=35.32 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhc---CC-----cchhHHHHHHhcCcEEEeCCe
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMT---SI-----AQTDIISTLQAMNMVKYWKGQ 640 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~T---gi-----~~~Dii~tL~~l~~~~~~~g~ 640 (687)
..+++.+...+...+++.++|+.. ++ ...||+..|+++|++.-.+.+
T Consensus 11 ~~fi~~~~~~~~~~i~l~~ia~~l~~~~~k~~~RRlYDI~NVLealgli~K~~k~ 65 (71)
T PF02319_consen 11 QRFIQLFESSPDKSISLNEIADKLISENVKTQRRRLYDIINVLEALGLIEKQSKN 65 (71)
T ss_dssp HHHHHHHHHCCCTEEEHHHHHHHCHHHCCHHHCHHHHHHHHHHHHCTSEEEEETT
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHcccccccccchhhHHHHHHHHhCceeecCCC
Confidence 345566665556789999999999 99 469999999999999874443
No 83
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=81.91 E-value=2.3 Score=49.40 Aligned_cols=60 Identities=18% Similarity=0.381 Sum_probs=40.2
Q ss_pred ceEEEEEEEcCCCcEEEEeeccc--cc---CCC-CceeeEEEecCccccccccchhhhhhhhhhhhcC
Q psy8112 213 FLFYILCVIDKYGAHLVGYFSKE--KE---SPD-GNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 213 FlFYvl~~~d~~g~h~vGyFSKE--k~---s~~-~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
..++|. + ++.+..+|||.+-. .. ... .--+-||.|.|.|||+|+|+.|++..=+..+..|
T Consensus 123 ~~~~vA-~-~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G 188 (547)
T TIGR03103 123 ITYLVA-E-DEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRG 188 (547)
T ss_pred ceEEEE-E-ECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 444444 3 22345799997621 11 111 1237889999999999999999999888777654
No 84
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=81.79 E-value=1 Score=30.94 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.7
Q ss_pred EeEecchhhccCCHHHHHHHhc
Q psy8112 137 LWICEFCLKYMTMERTYRYHKS 158 (687)
Q Consensus 137 lyiCe~Cl~y~~~~~~~~~H~~ 158 (687)
+|.|+.|.+-|.+...|.+|++
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKR 22 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHC
T ss_pred CCCCCccCCccCChhHHHHHhH
Confidence 5899999999999999999995
No 85
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=81.78 E-value=3.1 Score=31.41 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=29.6
Q ss_pred CcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEEE
Q psy8112 607 STTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHVI 643 (687)
Q Consensus 607 ~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~i 643 (687)
.+|..|||+++|++...| +..|++.|++...+|.+.|
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLISREGGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 478999999999997655 7788889999877665443
No 86
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=81.52 E-value=2 Score=48.08 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=37.8
Q ss_pred EEEEeecccccCCC-CceeeEEEecCccccccccchhhhhhhhhhhhcCC
Q psy8112 227 HLVGYFSKEKESPD-GNNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 275 (687)
Q Consensus 227 h~vGyFSKEk~s~~-~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~ 275 (687)
.++||.+-.....+ .--+.++.|.|.||++|+|+.|++..-+.++..|.
T Consensus 332 ~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~ 381 (429)
T TIGR01890 332 NIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGI 381 (429)
T ss_pred EEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 79999765443222 24588999999999999999999988888776543
No 87
>PRK10314 putative acyltransferase; Provisional
Probab=81.38 E-value=1.7 Score=41.69 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=33.6
Q ss_pred cEEEEeecccccCCC--CceeeEEEecCccccccccchhhhhhhhhhh
Q psy8112 226 AHLVGYFSKEKESPD--GNNVACILTLPPYQRQGYGKFLISFSYELSK 271 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~--~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~ 271 (687)
..+|||-+--..... ..-|.=+.|.|.|||+|+|+.|++..-+..+
T Consensus 57 ~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~ 104 (153)
T PRK10314 57 DELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCT 104 (153)
T ss_pred CEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 368999774332211 2348889999999999999999996655544
No 88
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=81.15 E-value=4.9 Score=34.50 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCeEEEEeCHHHHHH
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQHVICVTPKIVEE 652 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~~~i~~~~~~~~~ 652 (687)
.|++.|....+ .+|+.||++.+||+. .-.+.+|.+.|+|..........+....++-
T Consensus 9 ~Il~~l~~~~~-~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~~ 68 (91)
T smart00346 9 AVLRALAEEPG-GLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLEL 68 (91)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHHHHH
Confidence 46677765433 699999999999996 5567888899999875333234456665543
No 89
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=80.78 E-value=5.1 Score=33.36 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=36.2
Q ss_pred CcCHHHHHHhcCCcch---hHHHHHHhcCcEEEeCCeEEEEeCHHHHHH
Q psy8112 607 STTIKELSEMTSIAQT---DIISTLQAMNMVKYWKGQHVICVTPKIVEE 652 (687)
Q Consensus 607 ~~si~~is~~Tgi~~~---Dii~tL~~l~~~~~~~g~~~i~~~~~~~~~ 652 (687)
.+|.++||..+|++.+ -++..|++.|+|...++ .++..|.+.+++
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~-~i~I~d~~~L~~ 75 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKRG-KIIILDPERLEE 75 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT-EEEESSHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCC-EEEECCHHHHhc
Confidence 4789999999999964 56677788899996555 777788888765
No 90
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=80.70 E-value=3.7 Score=35.57 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCC-CcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCC---eEEEEeC
Q psy8112 595 VLLGILRNSKGN-STTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKG---QHVICVT 646 (687)
Q Consensus 595 ~il~~l~~~~~~-~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g---~~~i~~~ 646 (687)
.++-+|....+. .+|++|||+.+++++ ..|+..|+..|+|.-.+| ++.+..+
T Consensus 12 ~~l~~la~~~~~~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~ 70 (83)
T PF02082_consen 12 RILLYLARHPDGKPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLARP 70 (83)
T ss_dssp HHHHHHHCTTTSC-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecCC
Confidence 345556555444 499999999999996 788999999999998854 4555433
No 91
>PRK03624 putative acetyltransferase; Provisional
Probab=80.62 E-value=1.3 Score=39.41 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=28.6
Q ss_pred EEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhccc
Q psy8112 524 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSK 568 (687)
Q Consensus 524 h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr 568 (687)
.+||+..=.- ......+.-+.|.|.|||+|+|+.|++..=...+
T Consensus 55 ~~vG~~~~~~-~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~ 98 (140)
T PRK03624 55 EVVGTVMGGY-DGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLI 98 (140)
T ss_pred cEEEEEEeec-cCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 5888754221 1122345557789999999999998876544333
No 92
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=80.62 E-value=1.6 Score=40.32 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=29.5
Q ss_pred cEEEEeecccccCCCCceeEE-EEecCCcccccccceeeecchhcc
Q psy8112 523 AHLVGYFSKEKESPDGNNVAC-ILTLPPYQRQGYGKFLISFSYELS 567 (687)
Q Consensus 523 ~h~vGyFSKEK~s~~~~NLsC-Il~lP~yQrkGyG~~LI~fSY~Ls 567 (687)
-.++||.+=....+.+.+.-+ +++.|.||++|+|+.|+++.-..+
T Consensus 60 g~iiG~~~~~~~~~~~~~~~~~~~v~~~~~~~gig~~l~~~l~~~a 105 (155)
T PF13420_consen 60 GKIIGYVSLRDIDPYNHTAELSIYVSPDYRGKGIGRKLLDELIEYA 105 (155)
T ss_dssp TEEEEEEEEEESSSGTTEEEEEEEEEGGGTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEeeeccCCEEEEeeEEChhHCCCcHHHHHHHHHHHHh
Confidence 369999876644443233222 346699999999998887654433
No 93
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=80.32 E-value=2.3 Score=46.52 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=40.4
Q ss_pred cccccCcceEEEEEEEcCCCcEEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhc
Q psy8112 206 LYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 273 (687)
Q Consensus 206 lyydv~~FlFYvl~~~d~~g~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~e 273 (687)
|-.|-+.-.++|+.+ | ..+||+=|-. +|-|-||.|.|.||++|+|+.||+--=+.++..
T Consensus 24 l~~d~~~d~~vv~~~-~---~~lVg~g~l~-----g~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~ 82 (332)
T TIGR00124 24 LSLDAPLEIFIAVYE-D---EEIIGCGGIA-----GNVIKCVAIDESLRGEGLALQLMTELENLAYEL 82 (332)
T ss_pred CcccCCCCEEEEEEE-C---CEEEEEEEEe-----cCEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHc
Confidence 344555555666543 2 2799886642 356999999999999999999987554444433
No 94
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=80.16 E-value=8.9 Score=29.62 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=40.1
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCc---chhHHHHHHhcCcEEEeC-C-eEEEEeCHHHHHHHHH
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIA---QTDIISTLQAMNMVKYWK-G-QHVICVTPKIVEEHIQ 655 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~---~~Dii~tL~~l~~~~~~~-g-~~~i~~~~~~~~~~~~ 655 (687)
|++.|. .+.+|+.+|++.+|++ ..+++..|.+.|++.... + .....++.+.+.+.+.
T Consensus 2 il~~l~---~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 63 (66)
T smart00418 2 ILKLLA---EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSLTDEKVADLLE 63 (66)
T ss_pred HHHHhh---cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEEchHHHHHHHH
Confidence 455555 3468999999999996 467788889999997544 3 2455677765555443
No 95
>PRK07922 N-acetylglutamate synthase; Validated
Probab=79.91 E-value=1.3 Score=43.10 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=34.5
Q ss_pred cEEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhccccc
Q psy8112 523 AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 570 (687)
Q Consensus 523 ~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e 570 (687)
-.++||-+-.....+.-.+..+.|-|.||++|+|+.|++..-+.++..
T Consensus 55 ~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~ 102 (169)
T PRK07922 55 GEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVAREL 102 (169)
T ss_pred CcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHc
Confidence 368888554333333345778999999999999999998776655543
No 96
>PRK10314 putative acyltransferase; Provisional
Probab=79.88 E-value=1.9 Score=41.32 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=32.6
Q ss_pred cEEEEeecccccCC--CCceeEEEEecCCcccccccceeeecchhcc
Q psy8112 523 AHLVGYFSKEKESP--DGNNVACILTLPPYQRQGYGKFLISFSYELS 567 (687)
Q Consensus 523 ~h~vGyFSKEK~s~--~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Ls 567 (687)
..+|||.+--.... ...-|.-+.|.|.|||+|+|+.||...-+..
T Consensus 57 ~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~ 103 (153)
T PRK10314 57 DELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESC 103 (153)
T ss_pred CEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHH
Confidence 36899877543221 1245899999999999999999998654433
No 97
>PRK10562 putative acetyltransferase; Provisional
Probab=79.81 E-value=1.3 Score=41.01 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=31.4
Q ss_pred eEEEEEEecCCCcEEEEeecccccCCCCceeEEEEecCCcccccccceeeecc
Q psy8112 511 LFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFS 563 (687)
Q Consensus 511 lFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fS 563 (687)
.++|+++. | .+|||.+=-. ...+.-+.|.|.||++|||+.|++..
T Consensus 49 ~~~v~~~~---~-~~iG~~~~~~----~~~i~~~~v~~~~rg~G~g~~ll~~~ 93 (145)
T PRK10562 49 QTWVWEED---G-KLLGFVSVLE----GRFVGALFVAPKAVRRGIGKALMQHV 93 (145)
T ss_pred cEEEEEEC---C-EEEEEEEEee----ccEEEEEEECHHHcCCCHHHHHHHHH
Confidence 35666542 2 6889875311 13466689999999999999888754
No 98
>PRK05279 N-acetylglutamate synthase; Validated
Probab=79.79 E-value=1.2 Score=49.92 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=35.3
Q ss_pred EEEEeecccccCC-CCceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 524 HLVGYFSKEKESP-DGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 524 h~vGyFSKEK~s~-~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
.+|||.+-..... ...-+.++.|.|.||++|+|+.|++..-...+..|
T Consensus 344 ~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g 392 (441)
T PRK05279 344 LIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLG 392 (441)
T ss_pred EEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7888875443322 23468999999999999999999987766665443
No 99
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=78.91 E-value=3.7 Score=39.24 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=30.3
Q ss_pred EEEEeecccccCCCCce---eeEEEecCccccccccchhhhhhhhhhhh
Q psy8112 227 HLVGYFSKEKESPDGNN---VACILTLPPYQRQGYGKFLISFSYELSKV 272 (687)
Q Consensus 227 h~vGyFSKEk~s~~~~N---LaCIl~lP~yQrkGyG~lLI~fSY~Ls~~ 272 (687)
.+|||-+=-. .....+ +.=|.|.|.||++|+|+.|++.--+.++.
T Consensus 50 ~ivG~~~~~~-~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~ 97 (157)
T TIGR02406 50 EIVGFVSGYL-RPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVAC 97 (157)
T ss_pred eEEEEEEEEe-cCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHh
Confidence 5899864211 111122 23355899999999999999988777654
No 100
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=77.94 E-value=3.2 Score=44.76 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=34.3
Q ss_pred EEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhcC
Q psy8112 227 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 227 h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
.++|+-+-.. +-+.++.|.|.||++|+|+.|++.-=+.++.+|
T Consensus 16 ~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g 58 (297)
T cd02169 16 ELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEG 58 (297)
T ss_pred EEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 7888876532 348999999999999999999987766666554
No 101
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=77.71 E-value=0.9 Score=31.68 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=19.9
Q ss_pred eEecchhhccCCHHHHHHHhc
Q psy8112 138 WICEFCLKYMTMERTYRYHKS 158 (687)
Q Consensus 138 yiCe~Cl~y~~~~~~~~~H~~ 158 (687)
|.|+.|-+.|.++..|.+|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 789999999999999999986
No 102
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=77.23 E-value=8.8 Score=30.91 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeC-CeEE
Q psy8112 606 NSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWK-GQHV 642 (687)
Q Consensus 606 ~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~-g~~~ 642 (687)
..+|+.|||+.+|++..-| +..|++.|+|.... |.+.
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~~~~~~ 64 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISRRGRGKYR 64 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEE
Confidence 4689999999999997655 67788899998766 5443
No 103
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=77.09 E-value=2 Score=40.38 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=33.8
Q ss_pred EEEEeecccccCCC-----CceeEEEEecCCcccccccceeeecchhcccc
Q psy8112 524 HLVGYFSKEKESPD-----GNNVACILTLPPYQRQGYGKFLISFSYELSKV 569 (687)
Q Consensus 524 h~vGyFSKEK~s~~-----~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~ 569 (687)
.++||..-...-.. .--+..|-|-|.|||+|+|+.|++..-+..+.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~ 122 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRE 122 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHh
Confidence 58888776422211 45699999999999999999999876554443
No 104
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=77.00 E-value=3.8 Score=34.81 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=33.5
Q ss_pred HHHHHHHc---CCCCCcCHHHHHHhcCCc----chhHHHHHHhcCcEEEeCCe
Q psy8112 595 VLLGILRN---SKGNSTTIKELSEMTSIA----QTDIISTLQAMNMVKYWKGQ 640 (687)
Q Consensus 595 ~il~~l~~---~~~~~~si~~is~~Tgi~----~~Dii~tL~~l~~~~~~~g~ 640 (687)
.|++++.+ ..|-.-|+.||++.+|+. +.+-+.+|+..|+|+..+|.
T Consensus 10 ~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r~~~~ 62 (65)
T PF01726_consen 10 EVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRRDPGK 62 (65)
T ss_dssp HHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEEGCCS
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccCCCCC
Confidence 45555533 346678999999999998 67889999999999987654
No 105
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=76.56 E-value=3.9 Score=36.77 Aligned_cols=55 Identities=13% Similarity=0.376 Sum_probs=36.1
Q ss_pred ceEEEEEEEcCCCcEEEEeeccccc--CCCCceeeEEEecCccccccccchhhhhhhhhh
Q psy8112 213 FLFYILCVIDKYGAHLVGYFSKEKE--SPDGNNVACILTLPPYQRQGYGKFLISFSYELS 270 (687)
Q Consensus 213 FlFYvl~~~d~~g~h~vGyFSKEk~--s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls 270 (687)
+.+|+++..+ +..++|+.+=... .....+++ +.+.|.||++|||+-++..--...
T Consensus 56 ~~~~~i~~~~--~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~ 112 (142)
T PF13302_consen 56 YYYFAIEDKD--DGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWA 112 (142)
T ss_dssp EEEEEEEETT--TTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEecc--CCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHH
Confidence 4455555443 3457887775222 33347788 789999999999998877654333
No 106
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=76.19 E-value=0.69 Score=36.28 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=21.9
Q ss_pred EEecCCcccccccceeeecchhcccc
Q psy8112 544 ILTLPPYQRQGYGKFLISFSYELSKV 569 (687)
Q Consensus 544 Il~lP~yQrkGyG~~LI~fSY~Lsr~ 569 (687)
+.|.|.||++|+|+.|++......+.
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~ 112 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARK 112 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999865555554
No 107
>KOG3216|consensus
Probab=75.97 E-value=0.72 Score=45.76 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=29.0
Q ss_pred ceeEEEEecCCcccccccceeeecchhcccccCCCCCC
Q psy8112 539 NNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSP 576 (687)
Q Consensus 539 ~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~~~G~P 576 (687)
-=|.=|-|.|+|||||+|+.||.+=|+.+. +.|+|
T Consensus 85 iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~---~~G~~ 119 (163)
T KOG3216|consen 85 IYLEDLYVREQYRGKGIGSKLLKFVAEEAD---KLGTP 119 (163)
T ss_pred EEEEeeEecchhcccChHHHHHHHHHHHHH---HcCCC
Confidence 346678899999999999999999888876 46665
No 108
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=75.43 E-value=9 Score=31.33 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHVI 643 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~i 643 (687)
..|+++|... ..+|++|||+.+|+++.-| +..|+..|+++...|+..+
T Consensus 3 ~~Il~~l~~~--~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i~r~~GG~~~ 53 (57)
T PF08220_consen 3 QQILELLKEK--GKVSVKELAEEFGVSEMTIRRDLNKLEKQGLIKRTHGGAVL 53 (57)
T ss_pred HHHHHHHHHc--CCEEHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCEEEe
Confidence 4678888764 4699999999999998655 4578888999888887654
No 109
>KOG2696|consensus
Probab=75.24 E-value=2.6 Score=46.98 Aligned_cols=164 Identities=19% Similarity=0.268 Sum_probs=92.1
Q ss_pred chhhhhhhhhhhhcccccccccccC-CceEEEEEEec-CCC---cEEEEeecccccC--CC--CceeEEEEecCCccccc
Q psy8112 484 KLYCQNLCLLAKLFLDHKTLYFDVD-PFLFYILCVID-KYG---AHLVGYFSKEKES--PD--GNNVACILTLPPYQRQG 554 (687)
Q Consensus 484 k~ycqnLcLlaKlFLdhKtl~ydv~-~FlFYVl~e~d-~~g---~h~vGyFSKEK~s--~~--~~NLsCIl~lP~yQrkG 554 (687)
..+=..|--|+-||++--+..+..+ ..+.|.+.|.- .+| +|.+||.-==|-- .+ .--+|=||+|||||++|
T Consensus 154 ~~~~~Rlqt~~llFie~~~~id~tde~w~~~lv~EK~~~d~~~ly~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~G 233 (403)
T KOG2696|consen 154 RLFHERLQTFSLLFIEAASYIDNTDECWLIYLVYEKKEEDGDTLYAYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKG 233 (403)
T ss_pred HHHHHhHHHHHHHHHhhcchhccCCCceEEEEeeeecccCCceeEeeeeeEEEeehhhhhhhhhhhhheeEEeccccCCc
Confidence 5666788889999999888777665 56677777765 223 6777775422211 11 13478899999999999
Q ss_pred ccceeeecch--hcccccCCCCCCCCcCChhhhhHHHhhhHHHHHHHHHc---CCCC----CcC---HHHHHHhcCCcch
Q psy8112 555 YGKFLISFSY--ELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRN---SKGN----STT---IKELSEMTSIAQT 622 (687)
Q Consensus 555 yG~~LI~fSY--~Lsr~e~~~G~PEkPLSdlG~~sY~sYW~~~il~~l~~---~~~~----~~s---i~~is~~Tgi~~~ 622 (687)
.|.-|.+-=+ .+.--+-.=+|=|-|== +|.+-=..+...-+.. ...+ ..| +.++-++|-|++.
T Consensus 234 lgs~l~E~i~r~~~~~p~v~DiTVEdPse-----~F~~LRD~vd~~r~~sl~~fS~~~~h~~~s~~~~~~a~e~lKLn~~ 308 (403)
T KOG2696|consen 234 LGSQLYEAIARDYLEEPTVLDITVEDPSE-----AFDSLRDRVDIVRLRSLDVFSPESIHPGFSDEMIEKAREALKLNKR 308 (403)
T ss_pred hHHHHHHHHHHhhccCCceeEEEecCchH-----HHHHHHHHHHHHHhcccccCChhhhccchhHHHHHHHHHHhccCHH
Confidence 9988877532 22222222344454421 2222112222222221 1111 112 5666777888877
Q ss_pred hHHHHHHhcCcEEEe------CCeEEEEeCHHHHHH
Q psy8112 623 DIISTLQAMNMVKYW------KGQHVICVTPKIVEE 652 (687)
Q Consensus 623 Dii~tL~~l~~~~~~------~g~~~i~~~~~~~~~ 652 (687)
.+...++=|-++.-- .+.+.+-+.+.++..
T Consensus 309 Q~~r~~EIl~l~~~~~~d~~e~~s~rl~ik~Rl~~~ 344 (403)
T KOG2696|consen 309 QFRRVYEILRLLATDKKDKEEYKSFRLDIKRRLYAP 344 (403)
T ss_pred HHHHHHHHHHHHhcccchhhcccceeecchhhhhhh
Confidence 776666655544322 234455555555443
No 110
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=74.88 E-value=8.5 Score=31.26 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCC-----eEEEEeCH
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKG-----QHVICVTP 647 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g-----~~~i~~~~ 647 (687)
+.||..+. .....+|+.+|++.++|.. ..+|..|..+|+|....+ ...+.+++
T Consensus 6 ~~vL~~l~-~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~ 66 (68)
T PF13463_consen 6 WQVLRALA-HSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTP 66 (68)
T ss_dssp HHHHHHHT---TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-H
T ss_pred HHHHHHHH-ccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCC
Confidence 34566666 3455789999999999984 677888899999965422 24555554
No 111
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=74.69 E-value=3.3 Score=34.34 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCeE
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQH 641 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~~ 641 (687)
++..|... ...|++|||+.+||.. .+++..|...|+|...+|+.
T Consensus 13 vy~~Ll~~--~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~~~ 59 (68)
T PF01978_consen 13 VYLALLKN--GPATAEEIAEELGISRSTVYRALKSLEEKGLVEREEGRP 59 (68)
T ss_dssp HHHHHHHH--CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCce
Confidence 44444432 3589999999999995 67788888999998877653
No 112
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=74.58 E-value=2.1 Score=46.92 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=42.4
Q ss_pred cccccccccccCCceEEEEEEecCCCcEEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhccccc
Q psy8112 497 FLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 570 (687)
Q Consensus 497 FLdhKtl~ydv~~FlFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e 570 (687)
||.+--+-.|-+.-.++|+.+ | ..+||+=|-. +|-|-||.|.|.||++|+|+.||.--=..++.+
T Consensus 18 fL~~~~l~~d~~~d~~vv~~~-~---~~lVg~g~l~-----g~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~ 82 (332)
T TIGR00124 18 FLHQNELSLDAPLEIFIAVYE-D---EEIIGCGGIA-----GNVIKCVAIDESLRGEGLALQLMTELENLAYEL 82 (332)
T ss_pred HHHhcCCcccCCCCEEEEEEE-C---CEEEEEEEEe-----cCEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHc
Confidence 344333444544455666553 2 2799986652 356999999999999999998876544434433
No 113
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=74.26 E-value=2 Score=47.96 Aligned_cols=48 Identities=23% Similarity=0.417 Sum_probs=35.6
Q ss_pred EEEEeecccccCC-CCceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 524 HLVGYFSKEKESP-DGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 524 h~vGyFSKEK~s~-~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
.++||.+-..... ..--+.++.|.|.||++|+|+.|++..-..++..|
T Consensus 332 ~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G 380 (429)
T TIGR01890 332 NIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMG 380 (429)
T ss_pred EEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7899976554322 22468899999999999999999887666555443
No 114
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=72.95 E-value=21 Score=28.18 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCe--EEEEeC--HHHHH
Q psy8112 590 SYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQ--HVICVT--PKIVE 651 (687)
Q Consensus 590 sYW~~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~--~~i~~~--~~~~~ 651 (687)
+.|...|+..+.... ++..||++.+|++...| +..|.+.|++....+. ....++ .+..+
T Consensus 6 ~~~~~~il~~l~~~~---~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~g~~~~~ 71 (78)
T cd00090 6 DPTRLRILRLLLEGP---LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTDAERLLA 71 (78)
T ss_pred ChHHHHHHHHHHHCC---cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCCchHHHH
Confidence 457778888877632 89999999999997655 5666778888765433 445566 44443
No 115
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=72.94 E-value=7.4 Score=40.06 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCeEE
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQHV 642 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~~~ 642 (687)
.||+.|... ...+|+.|||+.+||.+ .-++.||++.|++....+.|.
T Consensus 13 ~IL~~l~~~-~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~~~~Y~ 62 (248)
T TIGR02431 13 AVIEAFGAE-RPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSDGRLFW 62 (248)
T ss_pred HHHHHHhcC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEE
Confidence 356666543 35699999999999985 788999999999987666554
No 116
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=72.90 E-value=7.6 Score=36.14 Aligned_cols=68 Identities=16% Similarity=0.327 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeC---CeEEEEeCHH--HHHHHHHhh
Q psy8112 590 SYWSWVLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWK---GQHVICVTPK--IVEEHIQST 657 (687)
Q Consensus 590 sYW~~~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~---g~~~i~~~~~--~~~~~~~~~ 657 (687)
.-+.-.++.+|....+..+|+.|||+.+|+++ ..++.+|++.|+|.-.+ |.+.+..+++ .+.+.++..
T Consensus 8 ~~yal~~l~~la~~~~~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g~~ggy~l~~~~~~it~~~v~~~l 83 (130)
T TIGR02944 8 TDYATLVLTTLAQNDSQPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRGVEGGYTLARAPRDITVADIVKAV 83 (130)
T ss_pred HhHHHHHHHHHHhCCCCCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCCCCCChhhcCCccccCHHHHHHHH
Confidence 33555667777766567899999999999995 78899999999998764 4555544432 244444443
No 117
>PHA02768 hypothetical protein; Provisional
Probab=71.89 E-value=2 Score=35.81 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=21.0
Q ss_pred eEecchhhccCCHHHHHHHhcc
Q psy8112 138 WICEFCLKYMTMERTYRYHKSE 159 (687)
Q Consensus 138 yiCe~Cl~y~~~~~~~~~H~~~ 159 (687)
|.|+.|.+.|.....|.+|+++
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~ 27 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRK 27 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHh
Confidence 7899999999999999999986
No 118
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=71.80 E-value=3 Score=48.47 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=37.5
Q ss_pred ceEEEEEEecCCCcEEEEeecccc----cC-C-CCceeEEEEecCCcccccccceeeecchhccccc
Q psy8112 510 FLFYILCVIDKYGAHLVGYFSKEK----ES-P-DGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 570 (687)
Q Consensus 510 FlFYVl~e~d~~g~h~vGyFSKEK----~s-~-~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e 570 (687)
..++|. +. +.+-.+|||.+-.. .. . ..--+-||.|.|.||++|+|+.|++..-+..+..
T Consensus 123 ~~~~vA-~~-~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~ 187 (547)
T TIGR03103 123 ITYLVA-ED-EASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSR 187 (547)
T ss_pred ceEEEE-EE-CCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC
Confidence 444444 32 23457999976211 01 1 1123778999999999999999998865555443
No 119
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=71.71 E-value=11 Score=35.71 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=45.7
Q ss_pred HHHHHHHHcC-CCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEe---CCeEEEEeCHHHH--HHHHHhh
Q psy8112 594 WVLLGILRNS-KGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYW---KGQHVICVTPKIV--EEHIQST 657 (687)
Q Consensus 594 ~~il~~l~~~-~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~---~g~~~i~~~~~~~--~~~~~~~ 657 (687)
-.++-+|..+ .+..+|+++||+.++|.+ +.|+..|...|+|.-. +|++.+..+++.| .+.++..
T Consensus 11 l~~l~~La~~~~~~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~~~Itl~dv~~a~ 83 (135)
T TIGR02010 11 VTAMLDLALNAETGPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPAEDISVADIIDAV 83 (135)
T ss_pred HHHHHHHHhCCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCHHHCcHHHHHHHh
Confidence 3445555543 345799999999999995 7889999999999765 3568887777644 3444443
No 120
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=71.42 E-value=10 Score=39.85 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeC
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWK 638 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~ 638 (687)
.||+.|... +..+|+.|||++|||.+ ..++.||.+.|++....
T Consensus 29 ~IL~~~~~~-~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~ 74 (271)
T PRK10163 29 AILQYLEKS-GGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDS 74 (271)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 577777654 34699999999999985 78899999999998753
No 121
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=70.77 E-value=3.6 Score=27.69 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.8
Q ss_pred eEecchhhccCCHHHHHHHhc
Q psy8112 138 WICEFCLKYMTMERTYRYHKS 158 (687)
Q Consensus 138 yiCe~Cl~y~~~~~~~~~H~~ 158 (687)
|.|+-|-+-|.++.+|+.|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 789999999999999999985
No 122
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=70.77 E-value=8 Score=35.74 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=44.4
Q ss_pred HHHHHHHcCCC-CCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeC---CeEEEEeCHHHH--HHHHHhh
Q psy8112 595 VLLGILRNSKG-NSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWK---GQHVICVTPKIV--EEHIQST 657 (687)
Q Consensus 595 ~il~~l~~~~~-~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~---g~~~i~~~~~~~--~~~~~~~ 657 (687)
.++-+|....+ ..+|+++||+.+++++ .+|+.+|...|+|.... |.+.+..+++.| .+.++..
T Consensus 12 ~~l~~la~~~~~~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy~l~~~~~~itl~~I~~~~ 83 (132)
T TIGR00738 12 RALLDLALNPDEGPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGYRLARPPEEITVGDVVRAV 83 (132)
T ss_pred HHHHHHHhCCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCccCCCCHHHCCHHHHHHHH
Confidence 44555554433 3799999999999995 78999999999998753 456776666643 3444443
No 123
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=69.69 E-value=7.3 Score=37.92 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCcEE
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMVK 635 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~~~ 635 (687)
.|-++|+.+.+...|+.+||++||++++.|..-+.+=.+..
T Consensus 34 kV~~yLr~~p~~~ati~eV~e~tgVs~~~I~~~IreGRL~~ 74 (137)
T TIGR03826 34 KVYKFLRKHENRQATVSEIVEETGVSEKLILKFIREGRLQL 74 (137)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCcCHHHHHHHHHcCCeec
Confidence 56788998877778999999999999999999888766643
No 124
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=69.23 E-value=7.7 Score=30.68 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHH---HHhcC
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDIIST---LQAMN 632 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~t---L~~l~ 632 (687)
..|+..|.+..+. +|+++||+.+|++..-|... |+..+
T Consensus 3 ~~il~~L~~~~~~-it~~eLa~~l~vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 3 KQILKLLLESKEP-ITAKELAEELGVSRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHHTTTS-BEHHHHHHHCTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCC-cCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 3577888666554 99999999999997666544 44555
No 125
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=68.80 E-value=4.3 Score=36.50 Aligned_cols=49 Identities=14% Similarity=0.402 Sum_probs=32.8
Q ss_pred ceEEEEEEecCCCcEEEEeeccccc--CCCCceeEEEEecCCcccccccceeee
Q psy8112 510 FLFYILCVIDKYGAHLVGYFSKEKE--SPDGNNVACILTLPPYQRQGYGKFLIS 561 (687)
Q Consensus 510 FlFYVl~e~d~~g~h~vGyFSKEK~--s~~~~NLsCIl~lP~yQrkGyG~~LI~ 561 (687)
+.+|+++..+ +..++|+.+=... .....+++ +.+.|.||++|||+-++.
T Consensus 56 ~~~~~i~~~~--~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~ 106 (142)
T PF13302_consen 56 YYYFAIEDKD--DGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALK 106 (142)
T ss_dssp EEEEEEEETT--TTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHH
T ss_pred ceEEEEEecc--CCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHH
Confidence 4555555443 3457887766322 34457888 789999999999976543
No 126
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=68.29 E-value=6.4 Score=35.30 Aligned_cols=42 Identities=10% Similarity=0.261 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHc-CC-CCCcCHHHHHHhcCCcchhHHHHHHhc
Q psy8112 590 SYWSWVLLGILRN-SK-GNSTTIKELSEMTSIAQTDIISTLQAM 631 (687)
Q Consensus 590 sYW~~~il~~l~~-~~-~~~~si~~is~~Tgi~~~Dii~tL~~l 631 (687)
+=+...|+++|+. .. .+.++|.+|++.++|+.+||..+|+.|
T Consensus 46 ~~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~~~~v~~al~~L 89 (102)
T PF08784_consen 46 SPLQDKVLNFIKQQPNSEEGVHVDEIAQQLGMSENEVRKALDFL 89 (102)
T ss_dssp -HHHHHHHHHHHC----TTTEEHHHHHHHSTS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHhCcCHHHHHHHHHHH
Confidence 3478899999987 22 346999999999999999988877765
No 127
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=67.95 E-value=9.2 Score=37.25 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=42.2
Q ss_pred HHHHHcCCCC-CcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCC---eEEEEeCHHHH
Q psy8112 597 LGILRNSKGN-STTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKG---QHVICVTPKIV 650 (687)
Q Consensus 597 l~~l~~~~~~-~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g---~~~i~~~~~~~ 650 (687)
+-+|....++ .+|+++||+..||++ +-|+..|...|+|+-.+| ++.+.-+++.|
T Consensus 14 L~~LA~~~~~~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~~~~I 74 (150)
T COG1959 14 LLYLALLPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYRLARPPEEI 74 (150)
T ss_pred HHHHHhCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCccCCCChHHC
Confidence 4445544444 689999999999997 789999999999998765 67777777654
No 128
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=67.55 E-value=21 Score=32.70 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHcCCCCCcCHHHHHHhcCCc---chhHHHHHHhcCcEE-Ee-------CCeEEEE----eCHHHHHHHH
Q psy8112 590 SYWSWVLLGILRNSKGNSTTIKELSEMTSIA---QTDIISTLQAMNMVK-YW-------KGQHVIC----VTPKIVEEHI 654 (687)
Q Consensus 590 sYW~~~il~~l~~~~~~~~si~~is~~Tgi~---~~Dii~tL~~l~~~~-~~-------~g~~~i~----~~~~~~~~~~ 654 (687)
+|-+..-+.+|.+.. .. |+.+|.++|||. ..|+|.+|..+|+.- +. .|-|.|. +|++-|.+++
T Consensus 6 sF~Rrlyla~li~~~-~~-nvp~L~~~TGmPrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~~GyY~i~~WG~id~~wi~~~~ 83 (90)
T PF09904_consen 6 SFYRRLYLAYLIDSG-ER-NVPALMEATGMPRRTIQDTIKALPELGIECEFVQDGERNNAGYYRISDWGPIDRKWIADHL 83 (90)
T ss_dssp HHHHHHHHHHHHHHS--B--HHHHHHHH---HHHHHHHHHGGGGGT-EEEEE--TTS-S--EEEEEE-TTB-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-Cc-cHHHHHHHhCCCHhHHHHHHHHhhcCCeEEEEEecCccCCCCcEEeeecCCCCHHHHHHHH
Confidence 444555555565543 34 999999999997 699999999999953 33 2334553 5666666666
Q ss_pred Hh
Q psy8112 655 QS 656 (687)
Q Consensus 655 ~~ 656 (687)
+.
T Consensus 84 ~~ 85 (90)
T PF09904_consen 84 QE 85 (90)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 129
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=67.45 E-value=11 Score=29.39 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKY 636 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~ 636 (687)
..|+..|.+ .+.++.|||+.+|+++.-| +..|+.+|+|.+
T Consensus 5 ~~Il~~L~~---~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 5 LRILKLLSE---GPLTVSELAEELGLSQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHTT---SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHh---CCCchhhHHHhccccchHHHHHHHHHHHCcCeeC
Confidence 356666665 4589999999999998776 456777788753
No 130
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=67.24 E-value=3.6 Score=44.42 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=33.8
Q ss_pred EEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 524 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 524 h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
.+||+-+-.. +-+.++.|.|.||++|+|+.|++.-=+..+.+|
T Consensus 16 ~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g 58 (297)
T cd02169 16 ELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEG 58 (297)
T ss_pred EEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 7888876542 458999999999999999999987655555544
No 131
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=66.53 E-value=3 Score=29.14 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.0
Q ss_pred EeEecchhhccCCHHHHHHHhccCC
Q psy8112 137 LWICEFCLKYMTMERTYRYHKSECT 161 (687)
Q Consensus 137 lyiCe~Cl~y~~~~~~~~~H~~~C~ 161 (687)
+-.|..|.+-| ....+.+|++.|.
T Consensus 2 l~~C~~CgR~F-~~~~l~~H~~~C~ 25 (25)
T PF13913_consen 2 LVPCPICGRKF-NPDRLEKHEKICK 25 (25)
T ss_pred CCcCCCCCCEE-CHHHHHHHHHhcC
Confidence 45799999999 8889999999985
No 132
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=65.52 E-value=15 Score=38.29 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeC
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWK 638 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~ 638 (687)
.||+.|... +..+|+.||++.+|+.+ .-++.||++.|++....
T Consensus 15 ~iL~~l~~~-~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~ 60 (263)
T PRK09834 15 MVLRALNRL-DGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSA 60 (263)
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 456666654 33599999999999985 77899999999998753
No 133
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=65.08 E-value=15 Score=38.34 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCe
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQ 640 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~ 640 (687)
.||++|.. .+..+++.|||+.+|+.+ .-++.||+++|++.+....
T Consensus 8 ~iL~~l~~-~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~~ 55 (246)
T COG1414 8 AILDLLAE-GPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPED 55 (246)
T ss_pred HHHHHHHh-CCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCCC
Confidence 46777877 344489999999999986 6678999999999998743
No 134
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=64.57 E-value=15 Score=38.03 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeC--CeEE
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWK--GQHV 642 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~--g~~~ 642 (687)
.||+.|... ..+|+.|||+.|||.+ .-++.||.+.|++.... |.|.
T Consensus 18 ~IL~~l~~~--~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~~~~Y~ 68 (257)
T PRK15090 18 GILQALGEE--REIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYS 68 (257)
T ss_pred HHHHHhhcC--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEE
Confidence 467777653 3699999999999985 77899999999998753 4453
No 135
>PHA02943 hypothetical protein; Provisional
Probab=64.46 E-value=28 Score=34.89 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCc---chhHHHHHHhcCcEEEeC-Ce-EEEEeCHHHHHH
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIA---QTDIISTLQAMNMVKYWK-GQ-HVICVTPKIVEE 652 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~---~~Dii~tL~~l~~~~~~~-g~-~~i~~~~~~~~~ 652 (687)
..|+++| ..| ..|..+|++++|++ ...++..|+..|+|+.++ |. .+.+++++.-.+
T Consensus 14 ~eILE~L--k~G-~~TtseIAkaLGlS~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~day~~ 74 (165)
T PHA02943 14 IKTLRLL--ADG-CKTTSRIANKLGVSHSMARNALYQLAKEGMVLKVEIGRAAIWCLDEDAYTN 74 (165)
T ss_pred HHHHHHH--hcC-CccHHHHHHHHCCCHHHHHHHHHHHHHcCceEEEeecceEEEEEChHHHHH
Confidence 3566777 233 46899999999999 467889999999998775 43 456777765433
No 136
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=64.31 E-value=5.4 Score=38.14 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=27.3
Q ss_pred EEEEeecccccCCCCce---eEEEEecCCcccccccceeeecchhcc
Q psy8112 524 HLVGYFSKEKESPDGNN---VACILTLPPYQRQGYGKFLISFSYELS 567 (687)
Q Consensus 524 h~vGyFSKEK~s~~~~N---LsCIl~lP~yQrkGyG~~LI~fSY~Ls 567 (687)
.+|||.+=-. .....+ +.=|.|.|.||++|+|+.|++.--..+
T Consensus 50 ~ivG~~~~~~-~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a 95 (157)
T TIGR02406 50 EIVGFVSGYL-RPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERV 95 (157)
T ss_pred eEEEEEEEEe-cCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHH
Confidence 5899864211 111222 233558999999999999887655443
No 137
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=63.95 E-value=13 Score=33.38 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCCcCHHHHHHhcCCcch---hHHHHHHhcCcEEEeCCeEEEEeCHH
Q psy8112 605 GNSTTIKELSEMTSIAQT---DIISTLQAMNMVKYWKGQHVICVTPK 648 (687)
Q Consensus 605 ~~~~si~~is~~Tgi~~~---Dii~tL~~l~~~~~~~g~~~i~~~~~ 648 (687)
...+|..|||+.+|++.+ .++..|+..|+|....|.-.|.+|.+
T Consensus 45 ~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n~~ 91 (95)
T TIGR01610 45 QDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGMMGIVGVNTP 91 (95)
T ss_pred CCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecCCceeecCCC
Confidence 457899999999999965 56778889999998776666666644
No 138
>PRK01346 hypothetical protein; Provisional
Probab=63.73 E-value=7.7 Score=42.56 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=36.5
Q ss_pred EEEEeeccccc--------CCCCceeeEEEecCccccccccchhhhhhhhhhhhcCC
Q psy8112 227 HLVGYFSKEKE--------SPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 275 (687)
Q Consensus 227 h~vGyFSKEk~--------s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~ 275 (687)
.+||+..---. .....-+..+.|.|.|||+|+|+.|++..-+.++..|.
T Consensus 57 ~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~ 113 (411)
T PRK01346 57 EVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGE 113 (411)
T ss_pred EEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 68998763211 11224578899999999999999999999888876544
No 139
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=63.50 E-value=12 Score=37.30 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=38.8
Q ss_pred HHHHHHHHc---CCCCCcCHHHHHHhcCCc-c---hhHHHHHHhcCcEEEeCCeE
Q psy8112 594 WVLLGILRN---SKGNSTTIKELSEMTSIA-Q---TDIISTLQAMNMVKYWKGQH 641 (687)
Q Consensus 594 ~~il~~l~~---~~~~~~si~~is~~Tgi~-~---~Dii~tL~~l~~~~~~~g~~ 641 (687)
..||+.|.+ ..+...|++|||+++|++ + ...+.+|+..|+|....|..
T Consensus 9 ~~iL~~l~~~~~~~~~~~~~~ela~~~~~~s~~tv~~~l~~L~~~g~i~~~~~~~ 63 (199)
T TIGR00498 9 QEVLDLIRAHIESTGYPPSIREIARAVGLRSPSAAEEHLKALERKGYIERDPGKP 63 (199)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhCCCChHHHHHHHHHHHHCCCEecCCCCC
Confidence 457777763 346678999999999998 5 78899999999999887763
No 140
>smart00355 ZnF_C2H2 zinc finger.
Probab=63.06 E-value=4.1 Score=26.39 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.5
Q ss_pred eEecchhhccCCHHHHHHHhc
Q psy8112 138 WICEFCLKYMTMERTYRYHKS 158 (687)
Q Consensus 138 yiCe~Cl~y~~~~~~~~~H~~ 158 (687)
|.|+.|-+-|.+...+.+|+.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 579999999999999999986
No 141
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=62.98 E-value=19 Score=35.88 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=39.9
Q ss_pred CCCcCChhhhhHHHhhhHH-HHHHHHHcCCCCCcCHHHHHHhc--CCcchhH---HHHHHhcCcEEEeCC
Q psy8112 576 PEKPLSDLGKLSYRSYWSW-VLLGILRNSKGNSTTIKELSEMT--SIAQTDI---ISTLQAMNMVKYWKG 639 (687)
Q Consensus 576 PEkPLSdlG~~sY~sYW~~-~il~~l~~~~~~~~si~~is~~T--gi~~~Di---i~tL~~l~~~~~~~g 639 (687)
+.+.|..=-..-|.+ |.. +|.+.+.-..+ .-++.+||+++ +|+.++| +..|..+|+|+-..+
T Consensus 9 ~~~~l~~~~~~~~~~-W~~~~ir~l~~l~~~-~~d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~~ 76 (171)
T PF14394_consen 9 KVRVLDEDEFEYYSS-WYHPAIRELLPLMPF-APDPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDGD 76 (171)
T ss_pred ceeeccHHHHHHHhh-hHHHHHHHHhhcCCC-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECCC
Confidence 334444433333444 555 55554444333 34999999999 9997655 667789999987665
No 142
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=62.53 E-value=8.7 Score=34.98 Aligned_cols=36 Identities=17% Similarity=0.513 Sum_probs=28.8
Q ss_pred cEEEEeeecCCCCeeEEEEEecCccccccccccccccccccc
Q psy8112 2 AEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRF 43 (687)
Q Consensus 2 AEILsiR~~~~~G~~eYYVHYvgfNKRLDEWVt~dRLdLs~~ 43 (687)
|+|+++. | ...-|||+|.+.+-|.|+..+.-++-..
T Consensus 48 AtV~~v~-----g-~~l~v~~dg~~~~~D~W~~~~S~~I~Pv 83 (96)
T smart00561 48 ATVVEVK-----G-YRLLLHFDGWDDKYDFWCDADSPDIHPV 83 (96)
T ss_pred EEEEEEE-----C-CEEEEEEccCCCcCCEEEECCCCCcccC
Confidence 5565554 2 4899999999999999999998877544
No 143
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=61.97 E-value=26 Score=29.17 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=29.5
Q ss_pred CCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCe
Q psy8112 604 KGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQ 640 (687)
Q Consensus 604 ~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~ 640 (687)
.+..++..+||+..|+++ .+.+.-|+..|++.+.+.+
T Consensus 19 ~~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~~~~y~ 58 (60)
T PF01325_consen 19 EGGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVEYEPYK 58 (60)
T ss_dssp CTSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCC
Confidence 567899999999999996 5667777888999887654
No 144
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=61.15 E-value=18 Score=28.13 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=29.1
Q ss_pred CCCCc-CHHHHHHhcCCcch---hHHHHHHhcCcEEEeCCeE
Q psy8112 604 KGNST-TIKELSEMTSIAQT---DIISTLQAMNMVKYWKGQH 641 (687)
Q Consensus 604 ~~~~~-si~~is~~Tgi~~~---Dii~tL~~l~~~~~~~g~~ 641 (687)
.+..+ |+++||+..|++.. ..+..|+..|+|...+|..
T Consensus 16 ~~~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~~~g 57 (60)
T smart00345 16 PGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSG 57 (60)
T ss_pred CCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCe
Confidence 35567 99999999999864 5567778889987666553
No 145
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=61.00 E-value=42 Score=34.19 Aligned_cols=57 Identities=11% Similarity=0.258 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCCC-cCHHHHHHhcCCcchhHHHHHHhc---------Cc-EEEeCCeEEEEeCHHHHH
Q psy8112 595 VLLGILRNSKGNS-TTIKELSEMTSIAQTDIISTLQAM---------NM-VKYWKGQHVICVTPKIVE 651 (687)
Q Consensus 595 ~il~~l~~~~~~~-~si~~is~~Tgi~~~Dii~tL~~l---------~~-~~~~~g~~~i~~~~~~~~ 651 (687)
.+++.+.=..|++ +|+++|++.+++.+++|..+|+.| |+ |.-..|.|.+.+.++.-+
T Consensus 7 ~~iEA~LF~sg~pgls~~~La~~l~~~~~~v~~~l~~L~~~y~~~~~gi~i~~~~~~y~l~tk~e~~~ 74 (188)
T PRK00135 7 SIIEALLFVSGEEGLSLEQLAEILELEPTEVQQLLEELQEKYEGDDRGLKLIEFNDVYKLVTKEENAD 74 (188)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHH
Confidence 4455554446776 999999999999998888888877 33 556688899988887643
No 146
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=60.93 E-value=24 Score=26.67 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCe
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQ 640 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~ 640 (687)
.|+++|.+. ..+|+.+|++..++++.-| +..|+..|+|....++
T Consensus 4 ~il~~l~~~--~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~~~ 50 (53)
T smart00420 4 QILELLAQQ--GKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGG 50 (53)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 467777654 3489999999999997554 6667777888765443
No 147
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=60.77 E-value=13 Score=39.94 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=41.3
Q ss_pred EEEEEEEcCC-CcEEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhcC
Q psy8112 215 FYILCVIDKY-GAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274 (687)
Q Consensus 215 FYvl~~~d~~-g~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg 274 (687)
.+++...|.. +..+|||..=.... +.--+.=+++.|.+||+|+|+.|++.--+.++..|
T Consensus 231 ~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G 290 (320)
T TIGR01686 231 IVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLG 290 (320)
T ss_pred EEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcC
Confidence 4445544543 35699998643221 11236778999999999999999998888777654
No 148
>PRK11569 transcriptional repressor IclR; Provisional
Probab=60.40 E-value=21 Score=37.51 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeC
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWK 638 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~ 638 (687)
.||++|.+. ...+|+.|||+.+|+.+ .-++.||.+.|++....
T Consensus 32 ~IL~~l~~~-~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~ 77 (274)
T PRK11569 32 KLLEWIAES-NGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVG 77 (274)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 567777654 34699999999999985 67799999999998753
No 149
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=59.77 E-value=4.7 Score=37.13 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.3
Q ss_pred EEecCccccccccchhhhhhhhhhhh
Q psy8112 247 ILTLPPYQRQGYGKFLISFSYELSKV 272 (687)
Q Consensus 247 Il~lP~yQrkGyG~lLI~fSY~Ls~~ 272 (687)
|.|.|.|||+|+|+.|++.-.+.++.
T Consensus 69 i~v~~~~rg~G~g~~ll~~~~~~~~~ 94 (146)
T PRK09491 69 IAVDPDYQRQGLGRALLEHLIDELEK 94 (146)
T ss_pred EEECHHHccCCHHHHHHHHHHHHHHH
Confidence 56899999999999999988776653
No 150
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=59.05 E-value=21 Score=35.44 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=41.8
Q ss_pred CCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEe---CCeEEEEeCHHHH--HHHHHhh
Q psy8112 604 KGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYW---KGQHVICVTPKIV--EEHIQST 657 (687)
Q Consensus 604 ~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~---~g~~~i~~~~~~~--~~~~~~~ 657 (687)
.+..+|+++||+.++|.+ +.|+..|...|+|.-. +|++.+..+++.| .+.++..
T Consensus 22 ~~~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p~~Itl~dIl~ai 83 (164)
T PRK10857 22 EAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAV 83 (164)
T ss_pred CCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCHHHCCHHHHHHHH
Confidence 345799999999999995 8999999999999865 3568887776644 3444443
No 151
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=58.95 E-value=25 Score=34.32 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCC---eEEEEeCHHHH--HHHHHhh
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKG---QHVICVTPKIV--EEHIQST 657 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g---~~~i~~~~~~~--~~~~~~~ 657 (687)
.++-+|....+..+|+++||+..+|++ .-|+..|..-|+|.-.+| ++.+..+++.| .+.++..
T Consensus 12 r~L~~LA~~~~~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p~eItl~dIi~av 82 (153)
T PRK11920 12 RMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVRLGRPAADISLFDVVRVT 82 (153)
T ss_pred HHHHHHHhCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeeecCCHHHCcHHHHHHHH
Confidence 344456555566789999999999996 788889999999987765 67777777644 3445544
No 152
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=58.55 E-value=42 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=29.0
Q ss_pred CCCc-CHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCeEE
Q psy8112 605 GNST-TIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQHV 642 (687)
Q Consensus 605 ~~~~-si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~~~ 642 (687)
+..+ |+++||+.+|++. ...+..|++.|+|....+...
T Consensus 22 ~~~~~~~~~la~~~~is~~~v~~~l~~L~~~G~i~~~~~~~~ 63 (66)
T cd07377 22 GDRLPSERELAEELGVSRTTVREALRELEAEGLVERRPGRGT 63 (66)
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeE
Confidence 3344 5999999999996 566778888899987666543
No 153
>PRK00215 LexA repressor; Validated
Probab=58.51 E-value=18 Score=36.18 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=38.2
Q ss_pred HHHHHHH---cCCCCCcCHHHHHHhcCC-cc---hhHHHHHHhcCcEEEeCCe-EEEEe
Q psy8112 595 VLLGILR---NSKGNSTTIKELSEMTSI-AQ---TDIISTLQAMNMVKYWKGQ-HVICV 645 (687)
Q Consensus 595 ~il~~l~---~~~~~~~si~~is~~Tgi-~~---~Dii~tL~~l~~~~~~~g~-~~i~~ 645 (687)
.++++|. ...+..+|+.|||+++|+ ++ ..++.+|+..|+|....+. ..+.+
T Consensus 8 ~il~~i~~~~~~~~~~~s~~ela~~~~~~~~~tv~~~l~~L~~~g~i~~~~~~~r~~~l 66 (205)
T PRK00215 8 EILDFIRDHIEETGYPPSRREIADALGLRSPSAVHEHLKALERKGFIRRDPGRSRAIEV 66 (205)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCCCEEeCCCCcceEEe
Confidence 4555554 234667899999999999 54 8999999999999876544 34444
No 154
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=58.47 E-value=7.9 Score=33.33 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHHHHHcCCC--CCcCHHHHHHhcCCcchhHHHHHHhcCc
Q psy8112 595 VLLGILRNSKG--NSTTIKELSEMTSIAQTDIISTLQAMNM 633 (687)
Q Consensus 595 ~il~~l~~~~~--~~~si~~is~~Tgi~~~Dii~tL~~l~~ 633 (687)
.|++++.++.. ...||.|||+.+|+++.=|+...+.||+
T Consensus 20 ~Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~ 60 (77)
T PF01418_consen 20 KIADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGF 60 (77)
T ss_dssp HHHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTT
T ss_pred HHHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 46666654322 3589999999999999999999999997
No 155
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=57.87 E-value=11 Score=35.97 Aligned_cols=51 Identities=27% Similarity=0.567 Sum_probs=32.5
Q ss_pred EEEEEEEcCCC-cEEEEeec---------ccccC-CCCceeeEEE---ecCccccccccchhhhh
Q psy8112 215 FYILCVIDKYG-AHLVGYFS---------KEKES-PDGNNVACIL---TLPPYQRQGYGKFLISF 265 (687)
Q Consensus 215 FYvl~~~d~~g-~h~vGyFS---------KEk~s-~~~~NLaCIl---~lP~yQrkGyG~lLI~f 265 (687)
-|||.+....| ..++|+-- .+... .+-..+-||| |-+..||+|+|+.|.+.
T Consensus 6 ~Yll~d~~~~~~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ 70 (120)
T PF05301_consen 6 LYLLKDSEAGGKGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDH 70 (120)
T ss_pred EEEEEecCCCCCceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHH
Confidence 48888876633 45777653 11111 1113456876 66899999999999874
No 156
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=57.18 E-value=9.9 Score=32.10 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=25.9
Q ss_pred HHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCc
Q psy8112 600 LRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNM 633 (687)
Q Consensus 600 l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~ 633 (687)
|....|..-|.+|||+.+||++++|-.+|+..+-
T Consensus 13 L~~~lgr~Pt~eEiA~~lgis~~~v~~~l~~~~~ 46 (78)
T PF04539_consen 13 LEQELGREPTDEEIAEELGISVEEVRELLQASRR 46 (78)
T ss_dssp HHHHHSS--BHHHHHHHHTS-HHHHHHHHHHHSC
T ss_pred HHHHhCCCCCHHHHHHHHcccHHHHHHHHHhCCC
Confidence 4445577889999999999999999999987654
No 157
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=56.91 E-value=8.6 Score=27.69 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred EeEecchhhccCCHHHHHHHhc
Q psy8112 137 LWICEFCLKYMTMERTYRYHKS 158 (687)
Q Consensus 137 lyiCe~Cl~y~~~~~~~~~H~~ 158 (687)
.|.|+.|-++|.+...+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 3789999999999999999985
No 158
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=56.89 E-value=18 Score=33.47 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=27.8
Q ss_pred EEEEeecccc----cCCC--CceeeEEEecCccccccccchhhhhh
Q psy8112 227 HLVGYFSKEK----ESPD--GNNVACILTLPPYQRQGYGKFLISFS 266 (687)
Q Consensus 227 h~vGyFSKEk----~s~~--~~NLaCIl~lP~yQrkGyG~lLI~fS 266 (687)
+++|||--.. ...+ ...+--+++-|.|+++|+|+.++...
T Consensus 58 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~ 103 (152)
T PF13523_consen 58 EPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRAL 103 (152)
T ss_dssp EEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHH
T ss_pred EEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHH
Confidence 8999986421 1112 24577778889999999999888754
No 159
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=56.13 E-value=22 Score=29.84 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHH---HHHhcCcEEEeC
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDIIS---TLQAMNMVKYWK 638 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~---tL~~l~~~~~~~ 638 (687)
..|.+.|.+. | ..|+.+|++.|++++..|-. +|-+.|++.|+.
T Consensus 16 ~~V~~~Ll~~-G-~ltl~~i~~~t~l~~~~Vk~~L~~LiQh~~v~y~~ 61 (62)
T PF08221_consen 16 AKVGEVLLSR-G-RLTLREIVRRTGLSPKQVKKALVVLIQHNLVQYFE 61 (62)
T ss_dssp HHHHHHHHHC---SEEHHHHHHHHT--HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-C-CcCHHHHHHHhCCCHHHHHHHHHHHHHcCCeeeec
Confidence 3556667654 3 57999999999999887754 567889998874
No 160
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=55.92 E-value=22 Score=36.01 Aligned_cols=46 Identities=7% Similarity=0.207 Sum_probs=36.9
Q ss_pred CcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEEEEeCHHHHHH
Q psy8112 607 STTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHVICVTPKIVEE 652 (687)
Q Consensus 607 ~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~i~~~~~~~~~ 652 (687)
.+|.++||...|++++-| +..|++.|+|.+-.++++...|.+.+++
T Consensus 179 ~lt~~~IA~~lGisretlsR~L~~L~~~GlI~~~~~~~i~I~D~~~L~~ 227 (230)
T PRK09391 179 PMSRRDIADYLGLTIETVSRALSQLQDRGLIGLSGARQIELRNRQALRN 227 (230)
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCceEEEcCHHHHHH
Confidence 367899999999998876 4567778999876667888889887764
No 161
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=55.83 E-value=27 Score=33.14 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=38.4
Q ss_pred CCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCC---eEEEEeCHHHH
Q psy8112 603 SKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKG---QHVICVTPKIV 650 (687)
Q Consensus 603 ~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g---~~~i~~~~~~~ 650 (687)
..|..+|+++||+..||++ ..|+..|+..|+|...+| ++.+..+++.+
T Consensus 21 ~~g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~~~i 74 (141)
T PRK11014 21 PEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASTI 74 (141)
T ss_pred CCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCHHHC
Confidence 3466789999999999995 788888999999988876 46666666644
No 162
>PF12728 HTH_17: Helix-turn-helix domain
Probab=55.28 E-value=34 Score=26.65 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=35.3
Q ss_pred cCHHHHHHhcCCcchhHHHHHHhcCcEEEeCCeEEEEeCHHHHHHHHHh
Q psy8112 608 TTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVICVTPKIVEEHIQS 656 (687)
Q Consensus 608 ~si~~is~~Tgi~~~Dii~tL~~l~~~~~~~g~~~i~~~~~~~~~~~~~ 656 (687)
+|++|+|+..||+..-|-..+++-++ ...+-+..+.++.+.+++++++
T Consensus 2 lt~~e~a~~l~is~~tv~~~~~~g~i-~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTVYRWIRQGKI-PPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcCCC-CeEEeCCEEEEeHHHHHHHHHh
Confidence 68999999999999887776665544 3333323367888899988875
No 163
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=54.61 E-value=53 Score=33.12 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=42.8
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCC--------eEEEEeCHHHHHHHHH
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKG--------QHVICVTPKIVEEHIQ 655 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g--------~~~i~~~~~~~~~~~~ 655 (687)
.|+..|..+ | .+|-+|||+.+||+..+| +..|...|++.+.+. .+.+.++.+.+.+.++
T Consensus 26 ~Vl~~L~~~-g-~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~w~l~~~~i~d~ik 95 (178)
T PRK06266 26 EVLKALIKK-G-EVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYTWKPELEKLPEIIK 95 (178)
T ss_pred HHHHHHHHc-C-CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEEEEeCHHHHHHHHH
Confidence 466666653 3 589999999999998775 667778899986531 2466788877766554
No 164
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=53.93 E-value=25 Score=32.11 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeE
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQH 641 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~ 641 (687)
.||..|.....+ ...-||..|+|..++| +..|++||+|..++|..
T Consensus 11 ~IL~hl~~~~~D--y~k~ia~~l~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 11 KILQHLKKAGPD--YAKSIARRLKIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred HHHHHHHHHCCC--cHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 567777665443 7889999999997665 56678999999998873
No 165
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=53.84 E-value=20 Score=34.25 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=25.5
Q ss_pred EEEEeecccccCCCC-ceeeEEEecCccccccccchhhh
Q psy8112 227 HLVGYFSKEKESPDG-NNVACILTLPPYQRQGYGKFLIS 264 (687)
Q Consensus 227 h~vGyFSKEk~s~~~-~NLaCIl~lP~yQrkGyG~lLI~ 264 (687)
.++|+.+=.....++ .-.-.+.+.|.||++|||+.++.
T Consensus 77 ~~iG~~~l~~~~~~~~~~~ig~~i~~~~~g~G~~tea~~ 115 (179)
T PRK10151 77 ELIGVLSFNRIEPLNKTAYIGYWLDESHQGQGIISQALQ 115 (179)
T ss_pred EEEEEEEEEeeccCCCceEEEEEEChhhcCCcHHHHHHH
Confidence 688887743333322 12335678999999999997664
No 166
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=52.62 E-value=7 Score=40.12 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=17.8
Q ss_pred EEecCccccccccchhhhhhhhh
Q psy8112 247 ILTLPPYQRQGYGKFLISFSYEL 269 (687)
Q Consensus 247 Il~lP~yQrkGyG~lLI~fSY~L 269 (687)
|-|-|.+||+|||+-|+++-.+-
T Consensus 96 IAvhP~~q~~G~Gs~lL~~l~~~ 118 (196)
T PF13718_consen 96 IAVHPDLQRMGYGSRLLQQLEQY 118 (196)
T ss_dssp EEE-CCC-SSSHHHHHHHHHHHT
T ss_pred EEEChhhhcCCHHHHHHHHHHHH
Confidence 88999999999999999875443
No 167
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=52.04 E-value=56 Score=32.45 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=39.1
Q ss_pred CCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCe--EEEEeCHHHHHHHH
Q psy8112 603 SKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQ--HVICVTPKIVEEHI 654 (687)
Q Consensus 603 ~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~--~~i~~~~~~~~~~~ 654 (687)
..|..++-.+||+..|++. -+.+..|+..|+|...+|. .+..++.+.+++..
T Consensus 30 ~pG~~L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~ei~ 86 (212)
T TIGR03338 30 PPGAKLNESDIAARLGVSRGPVREAFRALEEAGLVRNEKNRGVFVREISLAEADEIY 86 (212)
T ss_pred CCCCEecHHHHHHHhCCChHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHHHHHH
Confidence 3588899999999999995 5667778888999876553 45557776665543
No 168
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=51.97 E-value=24 Score=28.06 Aligned_cols=41 Identities=32% Similarity=0.403 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEe
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYW 637 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~ 637 (687)
.+|..|.+..+ +|+.+||+.+++++ ..++.-|+..|+|...
T Consensus 7 ~iL~~l~~~~~--~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 7 RILRILYENGG--ITQSELAEKLGISRSTVTRIIKRLEKKGLIERE 50 (59)
T ss_dssp HHHHHHHHHSS--EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCC--CCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 56677776544 89999999999996 5677788888998754
No 169
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=51.81 E-value=32 Score=33.44 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=37.5
Q ss_pred CcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEEEEeCHHHHHHHHH
Q psy8112 607 STTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHVICVTPKIVEEHIQ 655 (687)
Q Consensus 607 ~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~i~~~~~~~~~~~~ 655 (687)
.+|-++||...|++++-| +..|+.-|+|. ..++++...|.+.+++...
T Consensus 149 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~-~~~~~i~I~d~~~L~~~~~ 199 (202)
T PRK13918 149 YATHDELAAAVGSVRETVTKVIGELSREGYIR-SGYGKIQLLDLKGLEELAE 199 (202)
T ss_pred cCCHHHHHHHhCccHHHHHHHHHHHHHCCCEE-cCCCEEEEECHHHHHHHHh
Confidence 468899999999998765 55667779998 4556788889988876543
No 170
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=51.80 E-value=39 Score=25.18 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=33.2
Q ss_pred cCHHHHHHhcCCcchhHHHHHHhcCcEEEeCCeEEEEeCHHHHHHHHH
Q psy8112 608 TTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVICVTPKIVEEHIQ 655 (687)
Q Consensus 608 ~si~~is~~Tgi~~~Dii~tL~~l~~~~~~~g~~~i~~~~~~~~~~~~ 655 (687)
+|++|+|+.+||+..-|-.-+++-.+-....|+ ...++.+.++++++
T Consensus 2 lt~~e~a~~lgis~~ti~~~~~~g~i~~~~~g~-~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTVYRLIHEGELPAYRVGR-HYRIPREDVDEYLE 48 (49)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHcCCCCeEEeCC-eEEEeHHHHHHHHh
Confidence 689999999999998777766554332222354 45678888888764
No 171
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=51.35 E-value=12 Score=34.51 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=26.4
Q ss_pred EEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhcc
Q psy8112 524 HLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELS 567 (687)
Q Consensus 524 h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Ls 567 (687)
.+|||-.=... .+...+.=|.|.|.||++|+|+.|++.-....
T Consensus 50 ~~vG~~~~~~~-~~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~ 92 (146)
T PRK09491 50 QMAAFAITQVV-LDEATLFNIAVDPDYQRQGLGRALLEHLIDEL 92 (146)
T ss_pred eEEEEEEEEee-cCceEEEEEEECHHHccCCHHHHHHHHHHHHH
Confidence 67777332211 11122333668999999999998887655433
No 172
>PRK10870 transcriptional repressor MprA; Provisional
Probab=51.10 E-value=52 Score=32.63 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHcCCCCCcCHHHHHHhcCCcchh---HHHHHHhcCcEEEeCC-----eEEEEeCHHH
Q psy8112 591 YWSWVLLGILRNSKGNSTTIKELSEMTSIAQTD---IISTLQAMNMVKYWKG-----QHVICVTPKI 649 (687)
Q Consensus 591 YW~~~il~~l~~~~~~~~si~~is~~Tgi~~~D---ii~tL~~l~~~~~~~g-----~~~i~~~~~~ 649 (687)
.+...+|..|....+..+|..|||+.+|+++.- ++..|+..|+|..... ...|.++++-
T Consensus 55 ~~q~~iL~~L~~~~~~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G 121 (176)
T PRK10870 55 ETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKG 121 (176)
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHH
Confidence 355566666765445679999999999999755 5788999999987533 3577787754
No 173
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=50.41 E-value=24 Score=27.52 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhc
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAM 631 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l 631 (687)
.|++.|... ...|..+||++.|+++.-|..-++.|
T Consensus 7 ~Il~~Lq~d--~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 7 KILRLLQED--GRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHH---TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHc--CCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 577777664 45899999999999999999888765
No 174
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=49.90 E-value=19 Score=30.29 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcch---hHHHHHHhcCcEEEe
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQT---DIISTLQAMNMVKYW 637 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~---Dii~tL~~l~~~~~~ 637 (687)
.|.++|++. ..+|+.|||+..+++++ +++..|..+|.|+-.
T Consensus 4 ~i~~~l~~~--~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 4 EIRDYLRER--GRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHHS---SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 356667653 46999999999999975 556667777777643
No 175
>PRK01346 hypothetical protein; Provisional
Probab=49.85 E-value=12 Score=41.16 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=33.2
Q ss_pred EEEEeeccccc--------CCCCceeEEEEecCCcccccccceeeecchhccccc
Q psy8112 524 HLVGYFSKEKE--------SPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 570 (687)
Q Consensus 524 h~vGyFSKEK~--------s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e 570 (687)
.+||+..---. .....-+..+.|.|.|||+|+|+.||+..-+..+..
T Consensus 57 ~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~ 111 (411)
T PRK01346 57 EVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRER 111 (411)
T ss_pred EEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHC
Confidence 58888663211 112345788999999999999999998865555544
No 176
>PHA00673 acetyltransferase domain containing protein
Probab=49.47 E-value=41 Score=33.38 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=45.4
Q ss_pred cEEEEeeccc---ccCCCC-c--eeeEEEecCccccccccchhhhhhhhhhhhcCC-----CCCCCCCCChh
Q psy8112 226 AHLVGYFSKE---KESPDG-N--NVACILTLPPYQRQGYGKFLISFSYELSKVEGL-----IGSPEKPLSDL 286 (687)
Q Consensus 226 ~h~vGyFSKE---k~s~~~-~--NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~-----~G~PEkPLSdl 286 (687)
..+|||..=. -.+..+ - -+.=+.|-|.+|++|+|+-|++..=+.+|..|- .++|++-.=|+
T Consensus 64 g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~f 135 (154)
T PHA00673 64 EELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQL 135 (154)
T ss_pred CEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHH
Confidence 3699976532 222222 1 367788999999999999999999999998876 58898866554
No 177
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=49.14 E-value=12 Score=32.45 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=27.7
Q ss_pred ceeeEEEecCccccccccchhhhhhhhhhhhcCC
Q psy8112 242 NNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 275 (687)
Q Consensus 242 ~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~ 275 (687)
-.+-=..|-|.+|++|+|+.|++..-+.++.+|.
T Consensus 23 ~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~ 56 (78)
T PF14542_consen 23 IVITHTEVPPELRGQGIAKKLVEAALDYARENGL 56 (78)
T ss_dssp EEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-
T ss_pred EEEEEEEECccccCCcHHHHHHHHHHHHHHHCCC
Confidence 4566678889999999999999999888888765
No 178
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=48.95 E-value=41 Score=32.33 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=35.0
Q ss_pred CcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEEEEeCHHHHHH
Q psy8112 607 STTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHVICVTPKIVEE 652 (687)
Q Consensus 607 ~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~i~~~~~~~~~ 652 (687)
.+|-+|||+..|++.+-| +..|+..|+|..-+ ++++..|.+.+.+
T Consensus 143 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~-~~i~I~d~~~L~~ 190 (193)
T TIGR03697 143 RLSHQAIAEAIGSTRVTITRLLGDLRKKKLISIHK-KKITVHDPIALGQ 190 (193)
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC-CEEEEeCHHHHHH
Confidence 478899999999998766 55667778898755 4677788877765
No 179
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=48.53 E-value=69 Score=31.58 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=40.0
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCC-----e---EEEEeCHHHHHHHHH
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKG-----Q---HVICVTPKIVEEHIQ 655 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g-----~---~~i~~~~~~~~~~~~ 655 (687)
|+..|..+ + .+|.+|||+.+||+..+| +..|...|++.|.+. + +...++.+.+.+.++
T Consensus 19 Vl~aL~~~-~-~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik 87 (158)
T TIGR00373 19 VLFSLGIK-G-EFTDEEISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLK 87 (158)
T ss_pred HHHHHhcc-C-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHH
Confidence 45555533 2 589999999999998765 666778899976541 1 344578776665554
No 180
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=48.43 E-value=13 Score=39.96 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=40.4
Q ss_pred EEEEEEecCC-CcEEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhcccccC
Q psy8112 512 FYILCVIDKY-GAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 512 FYVl~e~d~~-g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
.+++...|.. +..+|||..=.... +.--+.=+++.|.+|++|+|+.|++.--..++..|
T Consensus 231 ~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G 290 (320)
T TIGR01686 231 IVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLG 290 (320)
T ss_pred EEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcC
Confidence 3444444543 35689998654322 22347778999999999999999988777666544
No 181
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=48.10 E-value=7.8 Score=25.51 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=20.3
Q ss_pred eehhhhhhhcchhHHHHHHhcc
Q psy8112 335 WICEFCLKYMTMERTYRYHKSE 356 (687)
Q Consensus 335 ~iCe~CLKYMk~~~t~~~h~~~ 356 (687)
|.|+.|-+-.+....|.+|+..
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 7899999999999999999864
No 182
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=47.99 E-value=19 Score=33.35 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=52.2
Q ss_pred eEEEEEEEcCCCcEEEEeecccccCCCCceeeEEEecCccccccccchhhhhhhhhhhhcCCCCCCCCC
Q psy8112 214 LFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKP 282 (687)
Q Consensus 214 lFYvl~~~d~~g~h~vGyFSKEk~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~~G~PEkP 282 (687)
.||+++.. | ..+|++..=+...+--|+.|-.|=|.+|++|+|+-|++..=+-+|++|.-=.|-=|
T Consensus 16 ~~y~~~~~---G-~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 16 GRYVLTDE---G-EVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred eEEEEecC---C-cEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcccch
Confidence 35666542 3 26788888777777789999999999999999999999999999999985555444
No 183
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=47.97 E-value=43 Score=35.97 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=39.1
Q ss_pred CCCCcCChhhhhHHHhhhHHHHHHHHHcCCCCCcCHHHHHHhcC--Ccch---hHHHHHHhcCcEEEe
Q psy8112 575 SPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTS--IAQT---DIISTLQAMNMVKYW 637 (687)
Q Consensus 575 ~PEkPLSdlG~~sY~sYW~~~il~~l~~~~~~~~si~~is~~Tg--i~~~---Dii~tL~~l~~~~~~ 637 (687)
.+.+.|.+=-. .|-+=|...++..|....+..-++.+||++.+ |+.+ |.+..|.++|+|+-.
T Consensus 106 ~~~~~L~~~~~-~y~~~W~~~virel~~~~~~~~~~~~ia~~l~p~is~~ev~~sL~~L~~~glikk~ 172 (271)
T TIGR02147 106 PRLRVLAADQF-EYYRHWYNSVIRELLGVMPFADDPEELAKRCFPKISAEQVKESLDLLERLGLIKKN 172 (271)
T ss_pred chheeccHHHH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHCCCeeEC
Confidence 34455544333 34444555444444443333457899999999 8866 677788899999864
No 184
>PRK07921 RNA polymerase sigma factor SigB; Reviewed
Probab=46.74 E-value=35 Score=37.34 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.3
Q ss_pred CCCcCHHHHHHhcCCcchhHHHHHHhc
Q psy8112 605 GNSTTIKELSEMTSIAQTDIISTLQAM 631 (687)
Q Consensus 605 ~~~~si~~is~~Tgi~~~Dii~tL~~l 631 (687)
|...|++|||+.+||+.++|...+...
T Consensus 187 gr~pt~~EiA~~lgi~~~~v~~~~~~~ 213 (324)
T PRK07921 187 GREATDEELAEESGIPEEKIADLLEHS 213 (324)
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHc
Confidence 566789999999999999999887654
No 185
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=46.68 E-value=28 Score=35.44 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCcCHHHHHHhcCCcchhHHHHHHhcCcEEEe-----CCeEEEE-eCHHHH
Q psy8112 606 NSTTIKELSEMTSIAQTDIISTLQAMNMVKYW-----KGQHVIC-VTPKIV 650 (687)
Q Consensus 606 ~~~si~~is~~Tgi~~~Dii~tL~~l~~~~~~-----~g~~~i~-~~~~~~ 650 (687)
.++|..||++.+|+++..|+.+|..+|+|+-. .|..++. ++++..
T Consensus 103 qPiTr~eI~~irGv~~~~ii~~L~~~gLI~e~gr~~~~Grp~ly~tT~~F~ 153 (188)
T PRK00135 103 QPITRIEIDEIRGVNSDGALQTLLAKGLIKEVGRKEVPGRPILYGTTDEFL 153 (188)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHCCCeEEcCcCCCCCCCeeeehhHHHH
Confidence 36999999999999999999999999999742 3444443 555544
No 186
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=46.37 E-value=93 Score=28.23 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=39.6
Q ss_pred HHHHHH--cCCCCCcCHHHHHHhcCCcch---hHHHHHHhcCcEEEeCC-----eEEEEeCHHHHH
Q psy8112 596 LLGILR--NSKGNSTTIKELSEMTSIAQT---DIISTLQAMNMVKYWKG-----QHVICVTPKIVE 651 (687)
Q Consensus 596 il~~l~--~~~~~~~si~~is~~Tgi~~~---Dii~tL~~l~~~~~~~g-----~~~i~~~~~~~~ 651 (687)
+|..|. ...+..+|+.+||+.+++.+. =+|..|+..|+|...+. ...|.++++-.+
T Consensus 30 vL~~l~~~~~~~~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~ 95 (109)
T TIGR01889 30 ILYYLGKLENNEGKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRS 95 (109)
T ss_pred HHHHHHhhhccCCcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHH
Confidence 455555 344557999999999999964 56778889999985432 346677776543
No 187
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=45.44 E-value=24 Score=33.67 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=27.7
Q ss_pred EEEEEEecCCCcEEEEeecccccCCC--CceeEEEEecCCcccccccceee
Q psy8112 512 FYILCVIDKYGAHLVGYFSKEKESPD--GNNVACILTLPPYQRQGYGKFLI 560 (687)
Q Consensus 512 FYVl~e~d~~g~h~vGyFSKEK~s~~--~~NLsCIl~lP~yQrkGyG~~LI 560 (687)
+|++.. + ..++|+.+=....+. .-++ .+.+.|.||++|||+.++
T Consensus 69 ~~~i~~-~---~~~iG~~~l~~~~~~~~~~~i-g~~i~~~~~g~G~~tea~ 114 (179)
T PRK10151 69 MFMIFK-E---DELIGVLSFNRIEPLNKTAYI-GYWLDESHQGQGIISQAL 114 (179)
T ss_pred EEEEEE-C---CEEEEEEEEEeeccCCCceEE-EEEEChhhcCCcHHHHHH
Confidence 455543 2 268888764333222 1234 567899999999998554
No 188
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=45.22 E-value=53 Score=28.36 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCeEEEE
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQHVIC 644 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~~~i~ 644 (687)
+|.++|..-.....+..+|+..++++. ...+..|++.|+|+.-++.+.|+
T Consensus 7 Ii~~IL~~l~~~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI~~~~~~Y~lT 59 (77)
T PF14947_consen 7 IIFDILKILSKGGAKKTEIMYKANLNYSTLKKYLKELEEKGLIKKKDGKYRLT 59 (77)
T ss_dssp HHHHHHHHH-TT-B-HHHHHTTST--HHHHHHHHHHHHHTTSEEEETTEEEE-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCeeCCCCEEEEC
Confidence 445555443244678999999999995 67788899999998766666544
No 189
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=44.51 E-value=7 Score=35.55 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=13.1
Q ss_pred ecCccccccccchhh
Q psy8112 249 TLPPYQRQGYGKFLI 263 (687)
Q Consensus 249 ~lP~yQrkGyG~lLI 263 (687)
|||.|||||+.+.++
T Consensus 27 TlPeyR~~G~~~~v~ 41 (89)
T PF08444_consen 27 TLPEYRGQGLMSQVM 41 (89)
T ss_pred cCHhHhcCCHHHHHH
Confidence 899999999877665
No 190
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=43.34 E-value=51 Score=32.75 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=38.3
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCc----------EEEeCCeEEEEeCHHHHH
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNM----------VKYWKGQHVICVTPKIVE 651 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~----------~~~~~g~~~i~~~~~~~~ 651 (687)
+++.+.=..|+++|+++|++.++ .+++|...|+.|.- |....|++.+...++.-+
T Consensus 2 ~iEAlLF~s~~pvs~~~La~~l~-~~~~v~~~l~~L~~~y~~~~~gl~l~~~~~~y~l~tk~~~~~ 66 (159)
T PF04079_consen 2 IIEALLFASGEPVSIEELAEILG-SEDEVEEALEELQEEYNEEDRGLELVEVGGGYRLQTKPEYAE 66 (159)
T ss_dssp HHHHHHHH-SS-B-HHHHHHHCT--HHHHHHHHHHHHHHHHHCT-SEEEEEETTEEEEEE-GGGHH
T ss_pred hhHhhHHHcCCCCCHHHHHHHhC-CHHHHHHHHHHHHHHhccCCCCEEEEEECCEEEEEEhHHHHH
Confidence 45554444577899999999999 99999998887753 566788898888776643
No 191
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=43.25 E-value=22 Score=32.99 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=26.2
Q ss_pred EEEEeecccc----c--CCCCceeEEEEecCCcccccccceeee
Q psy8112 524 HLVGYFSKEK----E--SPDGNNVACILTLPPYQRQGYGKFLIS 561 (687)
Q Consensus 524 h~vGyFSKEK----~--s~~~~NLsCIl~lP~yQrkGyG~~LI~ 561 (687)
+++|||--.. . ......+.-+++-|.|+++|+|+.++.
T Consensus 58 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~ 101 (152)
T PF13523_consen 58 EPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLR 101 (152)
T ss_dssp EEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHH
T ss_pred EEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHH
Confidence 8888885432 1 112345777788899999999987654
No 192
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=43.03 E-value=29 Score=35.55 Aligned_cols=67 Identities=12% Similarity=0.242 Sum_probs=26.9
Q ss_pred HHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhc---CcEEE--eCCeEEEEeCHHHHHHHHHhhccCCCceee
Q psy8112 597 LGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAM---NMVKY--WKGQHVICVTPKIVEEHIQSTQYKRPRLQV 666 (687)
Q Consensus 597 l~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l---~~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~~~~~i 666 (687)
++++..+ .-+.|+|||...||+++|||.-+++| |.|.- .+.+-.|.|+++.++....- -..++++.|
T Consensus 105 i~yIK~~--Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~eE~~~va~f-i~~rGRvsi 176 (188)
T PF09756_consen 105 INYIKEH--KVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEEEMEAVAKF-IKQRGRVSI 176 (188)
T ss_dssp HHHHHH---SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE----------------------
T ss_pred HHHHHHc--ceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHHHHHHHHHH-HHHcCCccH
Confidence 3555553 45889999999999999998766554 55432 23346678888877654332 223455443
No 193
>PHA00616 hypothetical protein
Probab=43.02 E-value=11 Score=30.23 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.8
Q ss_pred EeEecchhhccCCHHHHHHHhcc
Q psy8112 137 LWICEFCLKYMTMERTYRYHKSE 159 (687)
Q Consensus 137 lyiCe~Cl~y~~~~~~~~~H~~~ 159 (687)
.|.|..|.+-|..+++|.+|+.+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHH
Confidence 37899999999999999999854
No 194
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=42.78 E-value=39 Score=31.44 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCcEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMVK 635 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~~~ 635 (687)
+.|.+.+.+. ..+|+.||++..||++.-|...|+.||+..
T Consensus 60 ~~L~~~v~~~--pd~tl~Ela~~l~Vs~~ti~~~Lkrlg~t~ 99 (119)
T PF01710_consen 60 DELKALVEEN--PDATLRELAERLGVSPSTIWRALKRLGITR 99 (119)
T ss_pred HHHHHHHHHC--CCcCHHHHHHHcCCCHHHHHHHHHHcCchh
Confidence 3455555553 358999999999999999999999999974
No 195
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=41.81 E-value=25 Score=28.66 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEe
Q psy8112 593 SWVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYW 637 (687)
Q Consensus 593 ~~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~ 637 (687)
+..|+..|.. +...|+.+|++.+|+++.-+ +..|+..|+|+-.
T Consensus 12 R~~Il~~L~~--~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 12 RLRILRLLAS--NGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHHHHHHH--CSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhc--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEe
Confidence 4567777733 35689999999999998777 4566777888643
No 196
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=41.69 E-value=44 Score=28.65 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=17.4
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCcch
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIAQT 622 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~~~ 622 (687)
+.++|++. +..+|++||.+.|++...
T Consensus 10 ~VeymK~r-~~Plt~~eI~d~l~~d~~ 35 (65)
T PF02186_consen 10 AVEYMKKR-DHPLTLEEILDYLSLDIG 35 (65)
T ss_dssp HHHHHHHH--S-B-HHHHHHHHTSSS-
T ss_pred HHHHHHhc-CCCcCHHHHHHHHcCCCC
Confidence 45677765 678999999999997654
No 197
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=40.66 E-value=90 Score=31.41 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=37.9
Q ss_pred CCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCe--EEEEeCHHHHHHHH
Q psy8112 603 SKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQ--HVICVTPKIVEEHI 654 (687)
Q Consensus 603 ~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~--~~i~~~~~~~~~~~ 654 (687)
..|..++.++||++.|++. -+.+..|+..|+|...++. .+..++.+.+.+..
T Consensus 26 ~pG~~L~e~eLae~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~ei~ 82 (224)
T PRK11534 26 QPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQKGYRVASMSEQELLDIF 82 (224)
T ss_pred CCCCcCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEEeCCCceEeCCCCHHHHHHHH
Confidence 3588899999999999995 5556667788999876554 44456666655543
No 198
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=40.46 E-value=47 Score=37.30 Aligned_cols=55 Identities=20% Similarity=0.418 Sum_probs=41.9
Q ss_pred HHHHHH--cCCCCCcCHHHHHHhcCCcch---hHHHHHHhcCcEEEeC-CeEEEEeCHHHH
Q psy8112 596 LLGILR--NSKGNSTTIKELSEMTSIAQT---DIISTLQAMNMVKYWK-GQHVICVTPKIV 650 (687)
Q Consensus 596 il~~l~--~~~~~~~si~~is~~Tgi~~~---Dii~tL~~l~~~~~~~-g~~~i~~~~~~~ 650 (687)
++..+. ...|+.+|.++|++++++.++ |++..|++.|++..-. |.+.+..+.+.+
T Consensus 297 iL~~l~~~~~~g~~~t~~~La~~l~~~~~~v~~iL~~L~~agLI~~~~~g~~~l~rd~~~i 357 (412)
T PRK04214 297 LLGRLDQARKHGKALDVDEIRRLEPMGYDELGELLCELARIGLLRRGERGQWVLARDLDSV 357 (412)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCeEecCCCceEecCCHHhC
Confidence 444443 345678999999999999875 8999999999997554 457777777654
No 199
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=40.32 E-value=22 Score=28.09 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=27.2
Q ss_pred CcEEEEeeecCCCCeeEEEEEecCcccccccccccccccccc
Q psy8112 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSR 42 (687)
Q Consensus 1 ~AEILsiR~~~~~G~~eYYVHYvgfNKRLDEWVt~dRLdLs~ 42 (687)
.|.|+++..+ ..|.|+|+|+..+ +||+.+.|....
T Consensus 20 ra~I~~~~~~-----~~~~V~f~D~G~~--~~v~~~~l~~l~ 54 (57)
T smart00333 20 RARIIKVDGE-----QLYEVFFIDYGNE--EVVPPSDLRPLP 54 (57)
T ss_pred EEEEEEECCC-----CEEEEEEECCCcc--EEEeHHHeecCC
Confidence 3778887642 5799999998776 799999987643
No 200
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=40.24 E-value=42 Score=29.63 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhc---CcEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAM---NMVK 635 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l---~~~~ 635 (687)
..|+..+... -+|++||.+.|||+...+..+|..| |+|.
T Consensus 8 ~~IL~~ls~~---c~TLeeL~ekTgi~k~~LlV~LsrL~k~GiI~ 49 (72)
T PF05584_consen 8 QKILIILSKR---CCTLEELEEKTGISKNTLLVYLSRLAKRGIIE 49 (72)
T ss_pred HHHHHHHHhc---cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 3556666543 6899999999999999998777655 6664
No 201
>KOG2488|consensus
Probab=40.19 E-value=17 Score=37.54 Aligned_cols=49 Identities=24% Similarity=0.353 Sum_probs=32.0
Q ss_pred eEEEEEEecCCCcEEEEeecccccCCCCceeEEEE-----ecCCcccccccceeeecc
Q psy8112 511 LFYILCVIDKYGAHLVGYFSKEKESPDGNNVACIL-----TLPPYQRQGYGKFLISFS 563 (687)
Q Consensus 511 lFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl-----~lP~yQrkGyG~~LI~fS 563 (687)
+=||++-.. .+ ..|||-|=+=.- +.++-|+- +-|.|||+|+|++|++--
T Consensus 92 ~~Yi~a~~~-~~-~~vgf~~Frf~v--d~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l 145 (202)
T KOG2488|consen 92 LRYICAWNN-KS-KLVGFTMFRFTV--DTGDPVLYCYEVQVASAYRGKGIGKFLLDTL 145 (202)
T ss_pred ceEEEEEcC-CC-ceeeEEEEEEEc--ccCCeEEEEEEEeehhhhhccChHHHHHHHH
Confidence 446665533 33 788886655433 24455543 568899999999999853
No 202
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=39.68 E-value=85 Score=29.94 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=45.2
Q ss_pred hHHHhhhHHHHHHH--HHcC------CCCCcCHHHHHHhcCCcchhHHHH---HHhcCcEEEeCCeEEEEeCHH
Q psy8112 586 LSYRSYWSWVLLGI--LRNS------KGNSTTIKELSEMTSIAQTDIIST---LQAMNMVKYWKGQHVICVTPK 648 (687)
Q Consensus 586 ~sY~sYW~~~il~~--l~~~------~~~~~si~~is~~Tgi~~~Dii~t---L~~l~~~~~~~g~~~i~~~~~ 648 (687)
.+|.-.|-..++.. +... ..-+.|.++||..|+-.+++|-.| |+.+|||....++.+...+.+
T Consensus 24 d~~~~i~lkLlllsgk~n~~G~L~~~~~ipy~~e~LA~~~~~~~~~V~~AL~~f~k~glIe~~ed~~i~i~~~~ 97 (121)
T PF09681_consen 24 DTYTVIWLKLLLLSGKLNDEGKLYLSGNIPYTAEMLALEFDRPVDTVRLALAVFQKLGLIEIDEDGVIYIPNWE 97 (121)
T ss_pred ceeHHHHHHHHHHhcccCCCCEEEECCCCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCeEEeecHH
Confidence 57788888877766 4321 123679999999999999998655 578999998866555545443
No 203
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=39.30 E-value=1.2e+02 Score=30.62 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=41.7
Q ss_pred HHHHHHHHcCC---CCCcCHHHHHHhcCCcchhHHH---HHHhcCcEEEeCCeEEEEeCHHHHHHHHH
Q psy8112 594 WVLLGILRNSK---GNSTTIKELSEMTSIAQTDIIS---TLQAMNMVKYWKGQHVICVTPKIVEEHIQ 655 (687)
Q Consensus 594 ~~il~~l~~~~---~~~~si~~is~~Tgi~~~Dii~---tL~~l~~~~~~~g~~~i~~~~~~~~~~~~ 655 (687)
.+|+.+|.... .-..|-+|||+..|++++=|-. .|+..|+|..-++ ++...|.+.+++...
T Consensus 153 ~Rla~~L~~~~~~~~~~~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~~-~i~I~d~~~L~~~~~ 219 (226)
T PRK10402 153 NRLAAFILLTQEGDLYHEKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSKR-GYLIKNRKQLSGLAL 219 (226)
T ss_pred HHHHHHHHhcccCCcccchHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeCC-EEEEeCHHHHHHHHH
Confidence 45555554321 1235789999999999877655 5566799988554 566678888876544
No 204
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=39.25 E-value=9.1 Score=39.30 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=18.0
Q ss_pred eeEEEEecCCcccccccceeeecc
Q psy8112 540 NVACILTLPPYQRQGYGKFLISFS 563 (687)
Q Consensus 540 NLsCIl~lP~yQrkGyG~~LI~fS 563 (687)
-+.=|-|-|.+||+|||+-|+++=
T Consensus 92 RIvRIAvhP~~q~~G~Gs~lL~~l 115 (196)
T PF13718_consen 92 RIVRIAVHPDLQRMGYGSRLLQQL 115 (196)
T ss_dssp EEEEEEE-CCC-SSSHHHHHHHHH
T ss_pred eEEEEEEChhhhcCCHHHHHHHHH
Confidence 355789999999999999887753
No 205
>KOG3138|consensus
Probab=38.89 E-value=10 Score=38.70 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=18.0
Q ss_pred EEecCccccccccchhhhhh
Q psy8112 247 ILTLPPYQRQGYGKFLISFS 266 (687)
Q Consensus 247 Il~lP~yQrkGyG~lLI~fS 266 (687)
+-|||+||++|+|+.||++-
T Consensus 95 Lgvl~~yR~~gIGs~Ll~~~ 114 (187)
T KOG3138|consen 95 LGVLPRYRNKGIGSKLLEFV 114 (187)
T ss_pred ecccHHHHhcchHHHHHHHH
Confidence 45899999999999999975
No 206
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=38.81 E-value=18 Score=24.28 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.5
Q ss_pred eehhhhhhhcchhHHHHHHhc
Q psy8112 335 WICEFCLKYMTMERTYRYHKS 355 (687)
Q Consensus 335 ~iCe~CLKYMk~~~t~~~h~~ 355 (687)
|.|+.|-+-+.+..+|+.|+.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 679999999999999999985
No 207
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=38.04 E-value=1.2e+02 Score=27.49 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=37.6
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeC-----CeEEEEeCHHH
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWK-----GQHVICVTPKI 649 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~-----g~~~i~~~~~~ 649 (687)
|+..|... ..+|+.+||+.+|+.+..| +..|+..|+|...+ ....+.++++-
T Consensus 33 iL~~l~~~--~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G 92 (118)
T TIGR02337 33 ILRILAEQ--GSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKG 92 (118)
T ss_pred HHHHHHHc--CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhH
Confidence 56666553 3589999999999987654 56677889998653 33577788754
No 208
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=37.38 E-value=32 Score=29.07 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=22.9
Q ss_pred cEEEEeeecCCCCeeEEEEEecCcc------ccccccccccccccccc
Q psy8112 2 AEIIQNRYNELENCFEYYVHYDGFN------RRLDEWVQKHRIMNSRF 43 (687)
Q Consensus 2 AEILsiR~~~~~G~~eYYVHYvgfN------KRLDEWVt~dRLdLs~~ 43 (687)
|.|++...+ ..|+|-|.++- .+|-|||+..+|+...+
T Consensus 23 a~V~~~~~~-----~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP 65 (68)
T PF05641_consen 23 ATVLKENGD-----DKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPP 65 (68)
T ss_dssp EEEEEEETT------EEEEEETT-SS--------EEEEEGGGEEE---
T ss_pred EEEEEeCCC-----cEEEEEECCcccccccccccEEEechheEECcCc
Confidence 666665543 29999996554 44999999999886543
No 209
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=37.07 E-value=7.2 Score=35.49 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=12.7
Q ss_pred ecCCcccccccceee
Q psy8112 546 TLPPYQRQGYGKFLI 560 (687)
Q Consensus 546 ~lP~yQrkGyG~~LI 560 (687)
|||.|||||+.+.++
T Consensus 27 TlPeyR~~G~~~~v~ 41 (89)
T PF08444_consen 27 TLPEYRGQGLMSQVM 41 (89)
T ss_pred cCHhHhcCCHHHHHH
Confidence 899999999987543
No 210
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=37.06 E-value=73 Score=23.47 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=29.9
Q ss_pred cCHHHHHHhcCCcchhHHHHHHhcCcEEE-eCCeEEEEeCHHHHHHHH
Q psy8112 608 TTIKELSEMTSIAQTDIISTLQAMNMVKY-WKGQHVICVTPKIVEEHI 654 (687)
Q Consensus 608 ~si~~is~~Tgi~~~Dii~tL~~l~~~~~-~~g~~~i~~~~~~~~~~~ 654 (687)
+|+.|+|+.+||++.-|-.-.++ |.+.. ..++....++.+.|.+.+
T Consensus 1 ~s~~e~a~~lgvs~~tl~~~~~~-g~~~~~~~~~~~~~~~~~ei~~~~ 47 (49)
T cd04762 1 LTTKEAAELLGVSPSTLRRWVKE-GKLKAIRTPGGHRRFPEEDLERLL 47 (49)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHc-CCCCceeCCCCceecCHHHHHHHH
Confidence 47899999999999888766555 44432 222233456777666543
No 211
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=36.96 E-value=17 Score=36.14 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=25.0
Q ss_pred ceeeEEEecCccccccccchhhhhhhhhhh
Q psy8112 242 NNVACILTLPPYQRQGYGKFLISFSYELSK 271 (687)
Q Consensus 242 ~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~ 271 (687)
-=++|+.|-|.||++|.|.-|++-.=.-+|
T Consensus 66 gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar 95 (153)
T COG1246 66 GELRSLAVHPDYRGSGRGERLLERLLADAR 95 (153)
T ss_pred eeEEEEEECHHhcCCCcHHHHHHHHHHHHH
Confidence 459999999999999999999886544444
No 212
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=36.94 E-value=53 Score=31.89 Aligned_cols=40 Identities=10% Similarity=-0.004 Sum_probs=25.7
Q ss_pred cEEEEeecccccCCCC---ceeeEEEecCccccccccchhhhhh
Q psy8112 226 AHLVGYFSKEKESPDG---NNVACILTLPPYQRQGYGKFLISFS 266 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~~---~NLaCIl~lP~yQrkGyG~lLI~fS 266 (687)
..++|+.+=-...... ..+. +.+-|+|||+|||+.++...
T Consensus 86 ~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~l 128 (194)
T PRK10809 86 KEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAA 128 (194)
T ss_pred CeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHH
Confidence 3688887732221111 2233 45789999999999888654
No 213
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=36.68 E-value=1.2e+02 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=28.4
Q ss_pred CCCCc-CHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCe
Q psy8112 604 KGNST-TIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQ 640 (687)
Q Consensus 604 ~~~~~-si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~ 640 (687)
.|+.+ |..+||+..|++. .+.+..|++.|+|...++.
T Consensus 20 ~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~~ 60 (64)
T PF00392_consen 20 PGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRPGR 60 (64)
T ss_dssp TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECCc
Confidence 47788 9999999999995 5667778888999877654
No 214
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=36.34 E-value=74 Score=32.04 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeC
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWK 638 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~ 638 (687)
..|+..|.++ + .+|+.|||+.+|+++ .-.+..|++.|++...+
T Consensus 146 ~~IL~~l~~~-g-~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~ 191 (203)
T TIGR01884 146 LKVLEVLKAE-G-EKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKG 191 (203)
T ss_pred HHHHHHHHHc-C-CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 3677877654 2 489999999999996 45567788889998775
No 215
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=35.98 E-value=33 Score=28.18 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=28.9
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcC
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMN 632 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~ 632 (687)
.|+++|.. .+.+|++|||+.+|++..-|..-+..++
T Consensus 9 ~Ll~~L~~--~~~~~~~ela~~l~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 9 KLLELLLK--NKWITLKELAKKLNISERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHH--HTSBBHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCcHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57888877 3569999999999999988877777776
No 216
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=35.89 E-value=30 Score=29.45 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEe
Q psy8112 593 SWVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYW 637 (687)
Q Consensus 593 ~~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~ 637 (687)
++.|+++|.... .++|-.|||+++||+..-+ +..|+.-|.|+..
T Consensus 2 ke~Il~~i~~~~-~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 2 KEKILEYIKEQN-GPLKTREIADALGLSIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp HHCHHHHHHHHT-S-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEE
T ss_pred cHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 456888888743 3589999999999997554 6677777888754
No 217
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=35.75 E-value=73 Score=33.48 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHV 642 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~ 642 (687)
..|+++|.+. ..++++||++..+++.+-| +..|++.|+++...|+-+
T Consensus 8 ~~Il~~l~~~--~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~r~~GGa~ 57 (252)
T PRK10906 8 DAIIELVKQQ--GYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAA 57 (252)
T ss_pred HHHHHHHHHc--CCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCEE
Confidence 4688888653 3699999999999998766 558999999988877764
No 218
>KOG2488|consensus
Probab=35.05 E-value=13 Score=38.40 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=29.1
Q ss_pred EEEEEEcCCCcEEEEeecccccCCCCceeeEE-----EecCccccccccchhhhhhhhh
Q psy8112 216 YILCVIDKYGAHLVGYFSKEKESPDGNNVACI-----LTLPPYQRQGYGKFLISFSYEL 269 (687)
Q Consensus 216 Yvl~~~d~~g~h~vGyFSKEk~s~~~~NLaCI-----l~lP~yQrkGyG~lLI~fSY~L 269 (687)
||++-.. .+ .+|||-|=+-.- | .++-|+ =+-|.|||+|+|++|++--=.+
T Consensus 94 Yi~a~~~-~~-~~vgf~~Frf~v-d-~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~ 148 (202)
T KOG2488|consen 94 YICAWNN-KS-KLVGFTMFRFTV-D-TGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKL 148 (202)
T ss_pred EEEEEcC-CC-ceeeEEEEEEEc-c-cCCeEEEEEEEeehhhhhccChHHHHHHHHHHH
Confidence 4544432 23 677775533211 1 333343 3568899999999999865333
No 219
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=34.96 E-value=52 Score=29.34 Aligned_cols=50 Identities=10% Similarity=0.198 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhcCcEEEeCCeEEEEeCHHHHHHHHHh
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVICVTPKIVEEHIQS 656 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l~~~~~~~g~~~i~~~~~~~~~~~~~ 656 (687)
..|+++|.. ..+||.|||+.+|++..=|-..|..- .. .++++..+..++.
T Consensus 9 ~~I~e~l~~---~~~ti~dvA~~~gvS~~TVsr~L~~~-------~~---~Vs~~Tr~rV~~a 58 (80)
T TIGR02844 9 LEIGKYIVE---TKATVRETAKVFGVSKSTVHKDVTER-------LP---EINPELAEEVKEV 58 (80)
T ss_pred HHHHHHHHH---CCCCHHHHHHHhCCCHHHHHHHhcCC-------CC---CCCHHHHHHHHHH
Confidence 357777876 35899999999999999998877431 01 2566666555544
No 220
>TIGR00281 segregation and condensation protein B. Shown to be required for chromosome segregation and condensation in B. subtilis.
Probab=34.94 E-value=1.9e+02 Score=29.58 Aligned_cols=57 Identities=11% Similarity=0.262 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCCC-cCHHHHHHhcCCcch-hHHHHHHhc---------Cc-EEEeCCeEEEEeCHHHHH
Q psy8112 595 VLLGILRNSKGNS-TTIKELSEMTSIAQT-DIISTLQAM---------NM-VKYWKGQHVICVTPKIVE 651 (687)
Q Consensus 595 ~il~~l~~~~~~~-~si~~is~~Tgi~~~-Dii~tL~~l---------~~-~~~~~g~~~i~~~~~~~~ 651 (687)
.+++.+.=..|++ +|+++||+.+++... ++-..++.+ |+ |.-..|.+.+.++++.-.
T Consensus 4 ~~iEAlLF~sg~pgls~~~La~il~~~~~~~~~~~l~~l~~~~~~~~~gl~l~~~~~~y~l~tk~e~~~ 72 (186)
T TIGR00281 4 AIIEALLFVSGEPGVTLAELVRILGKEKAEKLNAIMELLEDYLSRDTAGIEIIKFGQSYSLVTKPAFAD 72 (186)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCCCEEEEEECCEEEEEEhHHHHH
Confidence 3455554445777 999999999999854 333344433 23 456678888888876643
No 221
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=34.88 E-value=92 Score=32.94 Aligned_cols=65 Identities=29% Similarity=0.463 Sum_probs=46.6
Q ss_pred CChhhhhHHHhhhHHHHHHHHHcCCCCCcCHHHHHHhcCCc---chhHHHHHHhcCcEEEeCCeEEE--EeCHHHH
Q psy8112 580 LSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIA---QTDIISTLQAMNMVKYWKGQHVI--CVTPKIV 650 (687)
Q Consensus 580 LSdlG~~sY~sYW~~~il~~l~~~~~~~~si~~is~~Tgi~---~~Dii~tL~~l~~~~~~~g~~~i--~~~~~~~ 650 (687)
|.+||.-.|-+ .+-+..|.. | +.|-.|||+.+||. .-||+..|+..|++.-..|.+.. .++++.+
T Consensus 9 L~~lGlt~yEa---~vY~aLl~~--g-~~tA~eis~~sgvP~~kvY~vl~sLe~kG~v~~~~g~P~~y~av~p~~~ 78 (247)
T COG1378 9 LQKLGLTEYEA---KVYLALLCL--G-EATAKEISEASGVPRPKVYDVLRSLEKKGLVEVIEGRPKKYRAVPPEEL 78 (247)
T ss_pred HHHcCCCHHHH---HHHHHHHHh--C-CccHHHHHHHcCCCchhHHHHHHHHHHCCCEEeeCCCCceEEeCCHHHH
Confidence 56777766642 222333322 2 57999999999998 58999999999999988887533 4677654
No 222
>PHA00673 acetyltransferase domain containing protein
Probab=34.62 E-value=39 Score=33.55 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=44.8
Q ss_pred EEEEeecccccC---CCC---ceeEEEEecCCcccccccceeeecchhcccccCC-----CCCCCCcCChh
Q psy8112 524 HLVGYFSKEKES---PDG---NNVACILTLPPYQRQGYGKFLISFSYELSKVEGL-----IGSPEKPLSDL 583 (687)
Q Consensus 524 h~vGyFSKEK~s---~~~---~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~~-----~G~PEkPLSdl 583 (687)
.+|||..=.-.. ..+ --+.=+.|-|.+|++|+|+-|++..=+.+|..|- .++|++-.=|+
T Consensus 65 ~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~f 135 (154)
T PHA00673 65 ELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQL 135 (154)
T ss_pred EEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHH
Confidence 589976543222 111 1367788999999999999999999988988874 67899876554
No 223
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=34.34 E-value=38 Score=32.53 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=25.2
Q ss_pred cEEEEeecccccCCCC--ceeeEEEecCccccccccchhhh
Q psy8112 226 AHLVGYFSKEKESPDG--NNVACILTLPPYQRQGYGKFLIS 264 (687)
Q Consensus 226 ~h~vGyFSKEk~s~~~--~NLaCIl~lP~yQrkGyG~lLI~ 264 (687)
..++|+.+=-.....+ ..+ -+.+.|.||++|+|+.++.
T Consensus 66 g~~iG~~~~~~~~~~~~~~~~-~~~v~~~~~g~G~g~~l~~ 105 (186)
T PRK15130 66 GEKAGLVELVEINHVHRRAEF-QIIISPEYQGKGLATRAAK 105 (186)
T ss_pred CEEEEEEEEEeecCCCCeEEE-EEEECHHHcCCCHHHHHHH
Confidence 4688887532111111 223 4899999999999998765
No 224
>PHA00738 putative HTH transcription regulator
Probab=34.26 E-value=1.2e+02 Score=28.79 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEE-eCCeEEE
Q psy8112 593 SWVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKY-WKGQHVI 643 (687)
Q Consensus 593 ~~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~-~~g~~~i 643 (687)
+..|++.|.. ++..++.||++.++|+..-| +..|++.|+|.- ..|+++.
T Consensus 14 Rr~IL~lL~~--~e~~~V~eLae~l~lSQptVS~HLKvLreAGLV~srK~Gr~vy 66 (108)
T PHA00738 14 RRKILELIAE--NYILSASLISHTLLLSYTTVLRHLKILNEQGYIELYKEGRTLY 66 (108)
T ss_pred HHHHHHHHHH--cCCccHHHHHHhhCCCHHHHHHHHHHHHHCCceEEEEECCEEE
Confidence 4567888865 44589999999999998777 567888899974 4566554
No 225
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=33.39 E-value=17 Score=33.56 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=52.3
Q ss_pred eEEEEEEecCCCcEEEEeecccccCCCCceeEEEEecCCcccccccceeeecchhcccccCCCCCCCCc
Q psy8112 511 LFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKP 579 (687)
Q Consensus 511 lFYVl~e~d~~g~h~vGyFSKEK~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~~~G~PEkP 579 (687)
.||+++.. |- .+|++..=+...+.-|+.|-.|=|.+|++|+|+-|+...=+-+|++|+-=.|-=|
T Consensus 16 ~~y~~~~~---G~-~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 16 GRYVLTDE---GE-VIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred eEEEEecC---Cc-EEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcccch
Confidence 45666542 32 6788888888877899999999999999999999999999999999875555444
No 226
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=33.24 E-value=46 Score=28.69 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=24.5
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHh
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQA 630 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~ 630 (687)
|-++|.+ ...+|+.+|+++||++.+|+..++--
T Consensus 13 Vw~~L~~--~~~~s~~el~k~~~l~~~~~~~AiGW 45 (65)
T PF10771_consen 13 VWQLLNE--NGEWSVSELKKATGLSDKEVYLAIGW 45 (65)
T ss_dssp HHHHHCC--SSSEEHHHHHHHCT-SCHHHHHHHHH
T ss_pred HHHHHhh--CCCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 4455554 34699999999999999999887643
No 227
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=33.22 E-value=83 Score=33.37 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHV 642 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~ 642 (687)
..|+++|.... .+|+.|||+++|++..=| +..|++.|+++...|..+
T Consensus 20 ~~Il~~L~~~~--~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~r~~GGa~ 69 (269)
T PRK09802 20 EQIIQRLRQQG--SVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGAL 69 (269)
T ss_pred HHHHHHHHHcC--CEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeEEEeCCEE
Confidence 35677776642 499999999999997544 346889999987767654
No 228
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=33.10 E-value=91 Score=31.19 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=35.2
Q ss_pred CcCHHHHHHhcCCcchhHHH---HHHhcCcEEEeCCeEEEEeCHHHHHHH
Q psy8112 607 STTIKELSEMTSIAQTDIIS---TLQAMNMVKYWKGQHVICVTPKIVEEH 653 (687)
Q Consensus 607 ~~si~~is~~Tgi~~~Dii~---tL~~l~~~~~~~g~~~i~~~~~~~~~~ 653 (687)
.+|.++||...|++.+-|-. .|+.-|+|+.-+ +.+...|.+.+++.
T Consensus 184 ~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~~~~-~~i~i~d~~~L~~~ 232 (235)
T PRK11161 184 TMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKG-KYITIENNDALAQL 232 (235)
T ss_pred cccHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC-CEEEEcCHHHHHHH
Confidence 47889999999999887655 567778998654 46777788777653
No 229
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=32.75 E-value=28 Score=23.32 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=15.0
Q ss_pred eEecchhhccCCHHHHHHHhc
Q psy8112 138 WICEFCLKYMTMERTYRYHKS 158 (687)
Q Consensus 138 yiCe~Cl~y~~~~~~~~~H~~ 158 (687)
|.|+.|---.. +..|.+|++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~ 20 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLK 20 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHH
Confidence 78999995454 999999986
No 230
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=32.62 E-value=2e+02 Score=29.20 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeC-----CeEEEEeCHHHH
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWK-----GQHVICVTPKIV 650 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~-----g~~~i~~~~~~~ 650 (687)
+|..|... ..+|+.|||+.+++.+ .-++..|+..|+|.... ....|.++++-.
T Consensus 50 iL~~L~~~--~~itq~eLa~~l~l~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~ 110 (185)
T PRK13777 50 ILWIAYHL--KGASISEIAKFGVMHVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGE 110 (185)
T ss_pred HHHHHHhC--CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHH
Confidence 44555543 3589999999999985 45677899999998763 346778887543
No 231
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=32.41 E-value=65 Score=37.75 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.2
Q ss_pred cCccccccccchhhhhhhhhhhhcCC
Q psy8112 250 LPPYQRQGYGKFLISFSYELSKVEGL 275 (687)
Q Consensus 250 lP~yQrkGyG~lLI~fSY~Ls~~eg~ 275 (687)
-|.||++|||+.|++..-++++.+|.
T Consensus 466 ~~~~rg~GiG~~Ll~~ae~~Ar~~G~ 491 (522)
T TIGR01211 466 DDEWQHRGYGRRLLEEAERIAAEEGS 491 (522)
T ss_pred ChhHhCcCHHHHHHHHHHHHHHHCCC
Confidence 48999999999999999999987754
No 232
>COG1386 scpB Chromosome segregation and condensation protein B [DNA replication, recombination and repair]
Probab=32.38 E-value=83 Score=32.08 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=36.7
Q ss_pred CcCHHHHHHhcCCcchhHHHHHHhcCcEEEe-----CCeEEEE-eCHHHHH
Q psy8112 607 STTIKELSEMTSIAQTDIISTLQAMNMVKYW-----KGQHVIC-VTPKIVE 651 (687)
Q Consensus 607 ~~si~~is~~Tgi~~~Dii~tL~~l~~~~~~-----~g~~~i~-~~~~~~~ 651 (687)
+||-.||.+.-|+..+.+|.+|+.+|+|+-. +|..++. ++++-++
T Consensus 106 PiTR~eI~~iRGv~~~~~i~~L~e~glI~~~g~~~~~Grp~ly~tT~~Fl~ 156 (184)
T COG1386 106 PVTRSEIEEIRGVAVSQVISTLLERGLIREVGRRDTPGRPYLYGTTEKFLD 156 (184)
T ss_pred CccHHHHHHHhCccHHHHHHHHHHCCCeEecCCCCCCCCceeeeccHHHHH
Confidence 5999999999999999999999999999876 4655554 5555543
No 233
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=32.37 E-value=1.4e+02 Score=28.23 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=34.4
Q ss_pred CCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCC-----eEEEEeCHHHH
Q psy8112 606 NSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKG-----QHVICVTPKIV 650 (687)
Q Consensus 606 ~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g-----~~~i~~~~~~~ 650 (687)
..+|..|||+.+||++ .-++..|+..|+|....+ ...|.++++-.
T Consensus 53 ~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~ 105 (144)
T PRK11512 53 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGA 105 (144)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHH
Confidence 3599999999999996 456778888999987643 35677777543
No 234
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=31.92 E-value=1.5e+02 Score=28.13 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=30.8
Q ss_pred CCcCHHHHHHhcCCcchhHH---HHHHhcCcEEEeCCeEEEEeCHH
Q psy8112 606 NSTTIKELSEMTSIAQTDII---STLQAMNMVKYWKGQHVICVTPK 648 (687)
Q Consensus 606 ~~~si~~is~~Tgi~~~Dii---~tL~~l~~~~~~~g~~~i~~~~~ 648 (687)
..+++++||+..++++.-|. ..|+..|+|.+.+.. .|.++++
T Consensus 21 ~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~~~~-~i~LT~~ 65 (142)
T PRK03902 21 GYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYR-GLVLTPK 65 (142)
T ss_pred CCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEecCc-eEEECHH
Confidence 45799999999999876554 556888999876543 3556654
No 235
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=31.78 E-value=1e+02 Score=30.47 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=32.8
Q ss_pred CCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEEE
Q psy8112 604 KGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHVI 643 (687)
Q Consensus 604 ~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~i 643 (687)
.+..+...|||+..++++.=| +.-|+.+|++.|.+...+.
T Consensus 21 ~~~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~~y~gi~ 63 (154)
T COG1321 21 EKGFARTKDIAERLKVSPPSVTEMLKRLERLGLVEYEPYGGVT 63 (154)
T ss_pred ccCcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeEEecCCCeE
Confidence 345689999999999998777 8888899999997665543
No 236
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=31.66 E-value=54 Score=27.99 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=27.5
Q ss_pred cEEEEeeecCCCCeeEEEEEecCccccccccccccccccccc
Q psy8112 2 AEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRF 43 (687)
Q Consensus 2 AEILsiR~~~~~G~~eYYVHYvgfNKRLDEWVt~dRLdLs~~ 43 (687)
|.|+++. |. ..-|||+|.+.+-|.|+..+.-++-..
T Consensus 17 AtV~~v~-----g~-~l~v~~dg~~~~~d~w~~~~S~~i~Pv 52 (73)
T PF02820_consen 17 ATVVKVC-----GG-RLLVRYDGWDDDYDFWCHIDSPRIFPV 52 (73)
T ss_dssp EEEEEEE-----TT-EEEEEETTSTGGGEEEEETTSTTEEET
T ss_pred EEEEEEe-----CC-EEEEEEcCCCCCccEEEECCCCCeeec
Confidence 5565554 22 399999999999999999988776544
No 237
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=31.56 E-value=59 Score=30.03 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=31.2
Q ss_pred HHHHHHHc-----CCCCCcCHHHHHHhcCCcchhHHHH---HHhcCcEEEe
Q psy8112 595 VLLGILRN-----SKGNSTTIKELSEMTSIAQTDIIST---LQAMNMVKYW 637 (687)
Q Consensus 595 ~il~~l~~-----~~~~~~si~~is~~Tgi~~~Dii~t---L~~l~~~~~~ 637 (687)
+++.+.+. .+.+.||...|+++||+++..|..+ |..+|||..-
T Consensus 37 i~~ai~RkTyG~nKk~d~Is~sq~~e~tg~~~~~V~~al~~Li~~~vI~~~ 87 (100)
T PF04492_consen 37 ILLAIIRKTYGWNKKMDRISNSQIAEMTGLSRDHVSKALNELIRRGVIIRD 87 (100)
T ss_pred HHHHHHHHccCCCCccceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 44445543 3567899999999999998887665 4567888543
No 238
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=31.18 E-value=87 Score=32.90 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHV 642 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~ 642 (687)
..|++.|.+. ..++++|||+.+|++.+=| +..|++.|+|+...|+-+
T Consensus 8 ~~Il~~L~~~--~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l~r~~Gga~ 57 (256)
T PRK10434 8 AAILEYLQKQ--GKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVV 57 (256)
T ss_pred HHHHHHHHHc--CCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEE
Confidence 4678888764 3599999999999996433 345888999887777654
No 239
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=31.11 E-value=89 Score=29.32 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEe
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYW 637 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~ 637 (687)
..||+.|.... .+|+.+||++.|+++..| +..|+..|+++-+
T Consensus 11 ~~IL~~L~~d~--r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 11 RRILRLLQEDA--RISNAELAERVGLSPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeE
Confidence 36778887532 489999999999998665 6678888998754
No 240
>PRK03837 transcriptional regulator NanR; Provisional
Probab=30.95 E-value=1.3e+02 Score=30.44 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=32.9
Q ss_pred CCCCCc-CHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCeEE
Q psy8112 603 SKGNST-TIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQHV 642 (687)
Q Consensus 603 ~~~~~~-si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~~~ 642 (687)
..|+.+ +..+||++.|++. -+.+..|++.|+|...+|.-.
T Consensus 32 ~pG~~Lp~E~~Lae~~gVSRt~VREAL~~L~~eGlv~~~~~~G~ 75 (241)
T PRK03837 32 GPGDQLPSERELMAFFGVGRPAVREALQALKRKGLVQISHGERA 75 (241)
T ss_pred CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCce
Confidence 357888 9999999999994 677888899999988766543
No 241
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=30.72 E-value=43 Score=34.76 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCC--CcCHHHHHHhcCCcchhHHHHHHhcCcE
Q psy8112 594 WVLLGILRNSKGN--STTIKELSEMTSIAQTDIISTLQAMNMV 634 (687)
Q Consensus 594 ~~il~~l~~~~~~--~~si~~is~~Tgi~~~Dii~tL~~l~~~ 634 (687)
..|++++.++..+ .+||.+||+++|+++.=|+...+.||.=
T Consensus 19 ~~Ia~yil~n~~~v~~~si~~lA~~~~vS~aTv~Rf~kklG~~ 61 (284)
T PRK11302 19 RKVAEVILASPQTAIHSSIATLAKMANVSEPTVNRFCRSLDTK 61 (284)
T ss_pred HHHHHHHHhCHHHHHhcCHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 3677777765433 4799999999999999999999999983
No 242
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=30.67 E-value=89 Score=30.81 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCC
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKG 639 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g 639 (687)
.|++.+... +..||+|+|+.+|=.+..| ++||..+|+|.+.++
T Consensus 68 eLl~~Ia~~--~P~Si~ElAe~vgRdv~nvhr~Ls~l~~~GlI~fe~~ 113 (144)
T COG4190 68 ELLELIAQE--EPASINELAELVGRDVKNVHRTLSTLADLGLIFFEED 113 (144)
T ss_pred HHHHHHHhc--CcccHHHHHHHhCcchHHHHHHHHHHHhcCeEEEecC
Confidence 345555543 4579999999999987666 677888999988763
No 243
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=30.60 E-value=66 Score=29.51 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=27.3
Q ss_pred eEEEEEEEcCCCcEEEEeecccccCCCC--ceeeEEEecCccccccccchhhhhh
Q psy8112 214 LFYILCVIDKYGAHLVGYFSKEKESPDG--NNVACILTLPPYQRQGYGKFLISFS 266 (687)
Q Consensus 214 lFYvl~~~d~~g~h~vGyFSKEk~s~~~--~NLaCIl~lP~yQrkGyG~lLI~fS 266 (687)
.++|+.+ +..+||+-+=....... ..+... +.|.+| +|||+.++..-
T Consensus 52 ~~~~~~~----~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~ 100 (156)
T TIGR03585 52 RYWIVCQ----ESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAA 100 (156)
T ss_pred eEEEEEE----CCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHH
Confidence 3555543 23688876654333221 234433 667777 99999887643
No 244
>PF13730 HTH_36: Helix-turn-helix domain
Probab=30.18 E-value=64 Score=25.41 Aligned_cols=24 Identities=4% Similarity=0.243 Sum_probs=20.3
Q ss_pred cCHHHHHHhcCCcchhHHHHHHhc
Q psy8112 608 TTIKELSEMTSIAQTDIISTLQAM 631 (687)
Q Consensus 608 ~si~~is~~Tgi~~~Dii~tL~~l 631 (687)
.|++.||+.+|++..-|..+++.|
T Consensus 26 pS~~~la~~~g~s~~Tv~~~i~~L 49 (55)
T PF13730_consen 26 PSQETLAKDLGVSRRTVQRAIKEL 49 (55)
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 499999999999988887776654
No 245
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=29.58 E-value=66 Score=26.99 Aligned_cols=27 Identities=11% Similarity=0.331 Sum_probs=17.6
Q ss_pred CCcCHHHHHHhcCCcchhHHHHHHhcCc
Q psy8112 606 NSTTIKELSEMTSIAQTDIISTLQAMNM 633 (687)
Q Consensus 606 ~~~si~~is~~Tgi~~~Dii~tL~~l~~ 633 (687)
..+||+|+|+.|.|.+ +.|.+|+.-++
T Consensus 9 ~glsl~~va~~t~I~~-~~l~aiE~~~~ 35 (62)
T PF13413_consen 9 KGLSLEDVAEETKISV-SYLEAIENGDF 35 (62)
T ss_dssp TT--HHHHHHHCS--H-HHHHHHHCT-G
T ss_pred cCCCHHHHHHHhCCCH-HHHHHHHCcCh
Confidence 4589999999999976 56778887654
No 246
>KOG3396|consensus
Probab=29.29 E-value=87 Score=31.10 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=39.8
Q ss_pred EEEEEEEcCCCcEEEEeecc--cccC----CCCceeeEEEecCccccccccchhhhhhhhhhh
Q psy8112 215 FYILCVIDKYGAHLVGYFSK--EKES----PDGNNVACILTLPPYQRQGYGKFLISFSYELSK 271 (687)
Q Consensus 215 FYvl~~~d~~g~h~vGyFSK--Ek~s----~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~ 271 (687)
|||+...|..-.+++|==|= |+.- ...--+-=++|=+.|||||+|++||+.-=.|++
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k 115 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAK 115 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHH
Confidence 89999999888888884331 1110 001224447899999999999999998666655
No 247
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=29.19 E-value=45 Score=34.00 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=25.5
Q ss_pred CCCCcCHHHHHHhcCCcchhHH---HHHHhcCcEEE
Q psy8112 604 KGNSTTIKELSEMTSIAQTDII---STLQAMNMVKY 636 (687)
Q Consensus 604 ~~~~~si~~is~~Tgi~~~Dii---~tL~~l~~~~~ 636 (687)
+.+++|+.||+++|||+..-|- .-|+..|+++.
T Consensus 38 s~~Pmtl~Ei~E~lg~Sks~vS~~lkkL~~~~lV~~ 73 (177)
T COG1510 38 SRKPLTLDEIAEALGMSKSNVSMGLKKLQDWNLVKK 73 (177)
T ss_pred cCCCccHHHHHHHHCCCcchHHHHHHHHHhcchHHh
Confidence 3568999999999999976664 55667777653
No 248
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=28.93 E-value=40 Score=25.76 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=23.2
Q ss_pred CcEEEEeeecCCCCeeEEEEEecCccccccccccccccc
Q psy8112 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIM 39 (687)
Q Consensus 1 ~AEILsiR~~~~~G~~eYYVHYvgfNKRLDEWVt~dRLd 39 (687)
.|.|+++..+ ..+.|+|+|+... |.|+.++|.
T Consensus 16 ra~V~~~~~~-----~~~~V~f~DyG~~--~~v~~~~l~ 47 (48)
T cd04508 16 RAKITSILSD-----GKVEVFFVDYGNT--EVVPLSDLR 47 (48)
T ss_pred EEEEEEECCC-----CcEEEEEEcCCCc--EEEeHHHcC
Confidence 3788887642 5799999998874 667766654
No 249
>TIGR01714 phage_rep_org_N phage replisome organizer, putative, N-terminal region. This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region.
Probab=28.67 E-value=1.3e+02 Score=28.90 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=43.0
Q ss_pred hHHHhhhHHHHHHHHHcCCC-------CCcCHHHHHHhcCCcchhHHH---HHHhcCcEEEeCCeEEEEeC
Q psy8112 586 LSYRSYWSWVLLGILRNSKG-------NSTTIKELSEMTSIAQTDIIS---TLQAMNMVKYWKGQHVICVT 646 (687)
Q Consensus 586 ~sY~sYW~~~il~~l~~~~~-------~~~si~~is~~Tgi~~~Dii~---tL~~l~~~~~~~g~~~i~~~ 646 (687)
..|.-.|-.-++..+. ..| -+-+.+.||..|+-..++|-. +|+++|||....++.+...+
T Consensus 24 d~~~~I~lkLll~s~n-~~G~L~~~~~ipy~~e~LA~~~~~~~~~V~~Al~~f~k~glIe~~d~g~i~i~~ 93 (119)
T TIGR01714 24 DTHTIIWLKLLLLSLN-DGGCIYLNELAPYNAEMLATMFNRNVGDIRITLQTLESLGLIEKKNNGDIFLEN 93 (119)
T ss_pred cEeHHHHHHHHHHHhc-CCCEEEEcCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCcEEehh
Confidence 4677778887777743 222 256899999999999999865 56789999988655433333
No 250
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=28.63 E-value=72 Score=28.38 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=30.8
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEE
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVK 635 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~ 635 (687)
.|+..|... ..+|..+||+.+|+++.-| +..|+..|+++
T Consensus 7 ~il~~L~~~--~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 7 KILEELQKD--ARISLAELAKKVGLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 567777653 3589999999999998766 56677788887
No 251
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=28.63 E-value=16 Score=31.77 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=28.5
Q ss_pred CceeEEEEecCCcccccccceeeecchhcccccCC
Q psy8112 538 GNNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 572 (687)
Q Consensus 538 ~~NLsCIl~lP~yQrkGyG~~LI~fSY~Lsr~e~~ 572 (687)
.-.+-=..|-|.+|++|+|+-|++..-..++.+|.
T Consensus 22 ~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~ 56 (78)
T PF14542_consen 22 VIVITHTEVPPELRGQGIAKKLVEAALDYARENGL 56 (78)
T ss_dssp EEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-
T ss_pred EEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCC
Confidence 35566678889999999999999999988888875
No 252
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=28.47 E-value=25 Score=30.49 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=20.9
Q ss_pred CHHHHHHhcCCcchhHHHHHHhcCcE
Q psy8112 609 TIKELSEMTSIAQTDIISTLQAMNMV 634 (687)
Q Consensus 609 si~~is~~Tgi~~~Dii~tL~~l~~~ 634 (687)
...+.+..|..++.||..+|+.||+-
T Consensus 49 ~~a~~agR~~~~~~Dv~~Al~~~gi~ 74 (77)
T smart00576 49 SYAELAGRTEPNLGDVVLALENLGIS 74 (77)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCcc
Confidence 34556667888999999999999973
No 253
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=28.19 E-value=1e+02 Score=32.37 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHH---HHHhcCcEEEeCCeEEEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDIIS---TLQAMNMVKYWKGQHVIC 644 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~---tL~~l~~~~~~~g~~~i~ 644 (687)
..|+++|.+. ..++++|||+.+|++++=|-. .|++-|+++...|+-++.
T Consensus 8 ~~Il~~l~~~--g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~R~hGGa~~~ 59 (253)
T COG1349 8 QKILELLKEK--GKVSVEELAELFGVSEMTIRRDLNELEEQGLLLRVHGGAVLP 59 (253)
T ss_pred HHHHHHHHHc--CcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEEEEeCCEecC
Confidence 4688888763 369999999999999877754 899999999877776543
No 254
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=28.09 E-value=82 Score=29.45 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHhc-Cc
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAM-NM 633 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~l-~~ 633 (687)
..+++++..+-.+.+|+++||+.+||++.-+-..++.. |+
T Consensus 12 ~~~~~~I~~~~~~~~sl~~lA~~~g~S~~~l~r~Fk~~~G~ 52 (127)
T PRK11511 12 HSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGH 52 (127)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 46777787776678999999999888887776666644 44
No 255
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=27.53 E-value=48 Score=28.85 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=28.4
Q ss_pred HHhcCCcchhHHHHHHhcCcEE-EeCCeEEEEeCHH
Q psy8112 614 SEMTSIAQTDIISTLQAMNMVK-YWKGQHVICVTPK 648 (687)
Q Consensus 614 s~~Tgi~~~Dii~tL~~l~~~~-~~~g~~~i~~~~~ 648 (687)
|+.-.|+..||+.+|+.+|+.. ..+|.|.+...++
T Consensus 2 s~lp~~~~ke~ik~Le~~Gf~~vrqkGSH~q~kHp~ 37 (66)
T COG1724 2 SKLPRMKAKEVIKALEKDGFQLVRQKGSHRQYKHPD 37 (66)
T ss_pred CcCCcCCHHHHHHHHHhCCcEEEEeecceeEEEcCC
Confidence 5667889999999999999964 6688888776654
No 256
>TIGR02885 spore_sigF RNA polymerase sigma-F factor. Members of this protein family are the RNA polymerase sigma factor F. Sigma-F is specifically and universally a component of the Firmicutes lineage endospore formation program, and is expressed in the forespore to turn on expression of dozens of genes. It is closely homologous to sigma-G, which is also expressed in the forespore.
Probab=27.50 E-value=1.2e+02 Score=30.81 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=23.2
Q ss_pred CCCcCHHHHHHhcCCcchhHHHHHHhc
Q psy8112 605 GNSTTIKELSEMTSIAQTDIISTLQAM 631 (687)
Q Consensus 605 ~~~~si~~is~~Tgi~~~Dii~tL~~l 631 (687)
|...|++|||+.+|+++++|...+...
T Consensus 111 ~r~pt~~ela~~l~~~~~~v~~~~~~~ 137 (231)
T TIGR02885 111 GREPTINELAEALGVSPEEIVMALESA 137 (231)
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 456789999999999999999887754
No 257
>COG3888 Predicted transcriptional regulator [Transcription]
Probab=27.12 E-value=1.1e+02 Score=33.53 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcCCCCCcCHHHHHHhcCCcch---hHHHHHHhcCcEEEeC
Q psy8112 592 WSWVLLGILRNSKGNSTTIKELSEMTSIAQT---DIISTLQAMNMVKYWK 638 (687)
Q Consensus 592 W~~~il~~l~~~~~~~~si~~is~~Tgi~~~---Dii~tL~~l~~~~~~~ 638 (687)
-+++|++.|++..+..|.--||.+.+|++.. .+++.|+.-|+++..+
T Consensus 5 ~reklir~Lk~a~~~GI~Q~eIeel~GlSKStvSEaLs~LE~~giv~Rrk 54 (321)
T COG3888 5 LREKLIRELKRAGPEGIDQTEIEELMGLSKSTVSEALSELEKQGIVKRRK 54 (321)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHhCcchhHHHHHHHHHHhcCeeeeee
Confidence 4678999999988888999999999999864 5566677778887653
No 258
>KOG3138|consensus
Probab=27.08 E-value=12 Score=38.19 Aligned_cols=19 Identities=37% Similarity=0.763 Sum_probs=16.7
Q ss_pred EEecCCcccccccceeeec
Q psy8112 544 ILTLPPYQRQGYGKFLISF 562 (687)
Q Consensus 544 Il~lP~yQrkGyG~~LI~f 562 (687)
+-|||+||++|.|+.||++
T Consensus 95 Lgvl~~yR~~gIGs~Ll~~ 113 (187)
T KOG3138|consen 95 LGVLPRYRNKGIGSKLLEF 113 (187)
T ss_pred ecccHHHHhcchHHHHHHH
Confidence 4589999999999999876
No 259
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=27.01 E-value=87 Score=28.30 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=29.9
Q ss_pred CCcCHHHHHHhcCCcchhHHHHHHhcCcEEEe
Q psy8112 606 NSTTIKELSEMTSIAQTDIISTLQAMNMVKYW 637 (687)
Q Consensus 606 ~~~si~~is~~Tgi~~~Dii~tL~~l~~~~~~ 637 (687)
..+||.++|+..||.+.+...-|...|++..-
T Consensus 23 ~~~ti~~~AK~L~i~~~~l~~~Lr~~g~l~~~ 54 (111)
T PF03374_consen 23 GLYTIREAAKLLGIGRNKLFQWLREKGWLYRR 54 (111)
T ss_pred CCccHHHHHHHhCCCHHHHHHHHHhCCceEEC
Confidence 56999999999999999999999999999873
No 260
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=27.00 E-value=32 Score=33.01 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=19.0
Q ss_pred ceeEEEE---ecCCcccccccceeeec
Q psy8112 539 NNVACIL---TLPPYQRQGYGKFLISF 562 (687)
Q Consensus 539 ~NLsCIl---~lP~yQrkGyG~~LI~f 562 (687)
..+-||| |-+..||+|+|+-|.+.
T Consensus 44 ~~~~cvLDFyVhes~QR~G~Gk~LF~~ 70 (120)
T PF05301_consen 44 EPLLCVLDFYVHESRQRRGYGKRLFDH 70 (120)
T ss_pred cccceeeeEEEEeceeccCchHHHHHH
Confidence 3456776 66899999999998774
No 261
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=26.92 E-value=58 Score=31.58 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=24.0
Q ss_pred cEEEEeecccccCCC---CceeEEEEecCCcccccccceeee
Q psy8112 523 AHLVGYFSKEKESPD---GNNVACILTLPPYQRQGYGKFLIS 561 (687)
Q Consensus 523 ~h~vGyFSKEK~s~~---~~NLsCIl~lP~yQrkGyG~~LI~ 561 (687)
..++|+.+=-..... ...+. +.+-|+||++|||+.++.
T Consensus 86 ~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~ 126 (194)
T PRK10809 86 KEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQ 126 (194)
T ss_pred CeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHH
Confidence 368988774322211 12333 456899999999987653
No 262
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=26.90 E-value=2.2e+02 Score=26.71 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=37.1
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCC-----eEEEEeCHHH
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKG-----QHVICVTPKI 649 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g-----~~~i~~~~~~ 649 (687)
+|..|... +..+|..|||+.+|+++ .-++..|+..|+|...++ ...|.++++-
T Consensus 36 vL~~l~~~-~~~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G 96 (144)
T PRK03573 36 TLHNIHQL-PPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKA 96 (144)
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHH
Confidence 34444432 34579999999999996 556777888999987643 2466777653
No 263
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=26.86 E-value=99 Score=27.57 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhHH---HHHHhcCc-EEEeCC-eEEEEeCHH
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDII---STLQAMNM-VKYWKG-QHVICVTPK 648 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Dii---~tL~~l~~-~~~~~g-~~~i~~~~~ 648 (687)
.++..|....+..+|=++|++++||+...|. .+|++-|+ |.-.++ .|.+.-.++
T Consensus 7 ~~~~ll~~~~~~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ 65 (79)
T COG1654 7 MLLLLLLLLTGNFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPD 65 (79)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccc
Confidence 3445555566778999999999999988885 55666666 444444 454443333
No 264
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=26.75 E-value=55 Score=34.36 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCC--CcCHHHHHHhcCCcchhHHHHHHhcCc
Q psy8112 594 WVLLGILRNSKGN--STTIKELSEMTSIAQTDIISTLQAMNM 633 (687)
Q Consensus 594 ~~il~~l~~~~~~--~~si~~is~~Tgi~~~Dii~tL~~l~~ 633 (687)
..|++++.++.+. .+||.+||+++|+++.=|+...+.||.
T Consensus 31 ~~Ia~yil~~~~~v~~~si~~lA~~~~vS~aTi~Rf~kkLGf 72 (292)
T PRK11337 31 SRVVEWLLKPGDLSEATALKDIAEALAVSEAMIVKVAKKLGF 72 (292)
T ss_pred HHHHHHHHhCHHHHHhcCHHHHHHHhCCChHHHHHHHHHcCC
Confidence 3677777655432 479999999999999999999999998
No 265
>PRK07122 RNA polymerase sigma factor SigF; Reviewed
Probab=26.68 E-value=1.2e+02 Score=32.06 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCCcCHHHHHHhcCCcchhHHHHHHh
Q psy8112 605 GNSTTIKELSEMTSIAQTDIISTLQA 630 (687)
Q Consensus 605 ~~~~si~~is~~Tgi~~~Dii~tL~~ 630 (687)
|...|++|||+.+||++++|...+..
T Consensus 141 g~~pt~~eiA~~lg~~~~~v~~~~~~ 166 (264)
T PRK07122 141 GRAPTASELAAELGMDREEVVEGLVA 166 (264)
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 55678999999999999999998864
No 266
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=26.54 E-value=80 Score=31.78 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEe
Q psy8112 593 SWVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYW 637 (687)
Q Consensus 593 ~~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~ 637 (687)
+..|+..|... + .+|+.+|++.+||++.=| +..|++.|+|...
T Consensus 3 r~~IL~~L~~~-~-~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~ 48 (203)
T TIGR02702 3 KEDILSYLLKQ-G-QATAAALAEALAISPQAVRRHLKDLETEGLIEYE 48 (203)
T ss_pred HHHHHHHHHHc-C-CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEe
Confidence 35678888764 3 389999999999997655 4556667999765
No 267
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=26.39 E-value=1.9e+02 Score=29.65 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCCCc-CHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCeEE
Q psy8112 603 SKGNST-TIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQHV 642 (687)
Q Consensus 603 ~~~~~~-si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~~~ 642 (687)
..|+.+ |-.+||+..|++. -+.+..|+..|+|...+|.-.
T Consensus 29 ~pG~~LpsE~eLa~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~ 72 (254)
T PRK09464 29 RPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGT 72 (254)
T ss_pred CCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCcee
Confidence 357788 8999999999995 566777788899987766543
No 268
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=26.07 E-value=2.5e+02 Score=26.68 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEe-CCeEE-EEeCHH
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYW-KGQHV-ICVTPK 648 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~-~g~~~-i~~~~~ 648 (687)
.|+..|.+ +.+.++.||++.+||++.-| +..|++.|+|.-. .|... ..++++
T Consensus 20 ~IL~~L~~--~~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~ 76 (117)
T PRK10141 20 GIVLLLRE--SGELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSPH 76 (117)
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEECch
Confidence 56666654 23589999999999998877 5677888998644 45543 346654
No 269
>PRK12427 flagellar biosynthesis sigma factor; Provisional
Probab=25.86 E-value=1.2e+02 Score=31.18 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCCcCHHHHHHhcCCcchhHHHHHHh
Q psy8112 605 GNSTTIKELSEMTSIAQTDIISTLQA 630 (687)
Q Consensus 605 ~~~~si~~is~~Tgi~~~Dii~tL~~ 630 (687)
|...|++|||+.+||+.++|...+..
T Consensus 115 g~~pt~~eiA~~lg~~~~~v~~~~~~ 140 (231)
T PRK12427 115 GHEPNFEEISAELNLTAEEYQEYLLL 140 (231)
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 66779999999999999999888764
No 270
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=25.49 E-value=63 Score=33.61 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCC--CcCHHHHHHhcCCcchhHHHHHHhcCc
Q psy8112 594 WVLLGILRNSKGN--STTIKELSEMTSIAQTDIISTLQAMNM 633 (687)
Q Consensus 594 ~~il~~l~~~~~~--~~si~~is~~Tgi~~~Dii~tL~~l~~ 633 (687)
..|++++.++..+ .+||.|||+++|+++.=|+...+.||.
T Consensus 15 ~~ia~yil~n~~~v~~~si~elA~~~~vS~aTv~Rf~kklG~ 56 (278)
T PRK11557 15 RKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGY 56 (278)
T ss_pred HHHHHHHHhCHHHHHhcCHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 3577777665433 489999999999999999999999998
No 271
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=25.35 E-value=1e+02 Score=27.26 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHH
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQ 629 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~ 629 (687)
..|+..|....| .||.+|+++||-.+.-|-.+|.
T Consensus 13 a~li~mL~rp~G--ATi~ei~~atGWq~HTvRgals 46 (72)
T PF11994_consen 13 AQLIAMLRRPEG--ATIAEICEATGWQPHTVRGALS 46 (72)
T ss_pred HHHHHHHcCCCC--CCHHHHHHhhCCchhhHHHHHH
Confidence 467788877655 6999999999999999855553
No 272
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=25.35 E-value=63 Score=29.16 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeC------C--eEEEEeCHHHHHHHHH
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWK------G--QHVICVTPKIVEEHIQ 655 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~------g--~~~i~~~~~~~~~~~~ 655 (687)
.|++.|... | .++=+|||+.|||.+.+| +..|...|++.+.+ | .+...++.+.+.+.++
T Consensus 17 ~Il~~L~~~-~-~l~de~la~~~~l~~~~vRkiL~~L~~~~lv~~~~~~d~~~~~~~~yw~i~~~~~~~~ik 86 (105)
T PF02002_consen 17 RILDALLRK-G-ELTDEDLAKKLGLKPKEVRKILYKLYEDGLVSYRRRKDDERGWTRYYWYIDYDQIIDVIK 86 (105)
T ss_dssp HHHHHHHHH----B-HHHHHHTT-S-HHHHHHHHHHHHHHSS-EEEEE--------EEEEE-THHHH-----
T ss_pred HHHHHHHHc-C-CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEEEcCCCcEEEEEEEEcHHHHHHHHH
Confidence 567777653 3 489999999999998876 55667778987763 1 1456788887777664
No 273
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=25.30 E-value=46 Score=28.47 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.6
Q ss_pred EeEecchhhccCCHHHHHHHhccCC
Q psy8112 137 LWICEFCLKYMTMERTYRYHKSECT 161 (687)
Q Consensus 137 lyiCe~Cl~y~~~~~~~~~H~~~C~ 161 (687)
-+.|..|.+-|.+...|+.|+..=.
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCcc
Confidence 6999999999999999999998543
No 274
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=25.30 E-value=1.8e+02 Score=23.73 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHhcCCcchhH----HHHHHhcCcEEEeCCeE
Q psy8112 593 SWVLLGILRNSKGNSTTIKELSEMTSIAQTDI----ISTLQAMNMVKYWKGQH 641 (687)
Q Consensus 593 ~~~il~~l~~~~~~~~si~~is~~Tgi~~~Di----i~tL~~l~~~~~~~g~~ 641 (687)
...|+.-|+-. ..+++.++.+.+|....+. +..|++.|++...++.-
T Consensus 8 ~e~i~~~LR~~--~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll~~~~~~l 58 (66)
T PF06969_consen 8 REYIMLGLRCN--EGIDLSEFEQRFGIDFAEEFQKELEELQEDGLLEIDGGRL 58 (66)
T ss_dssp HHHHHHHHHHH--SEEEHHHHHHHTT--THHH-HHHHHHHHHTTSEEE-SSEE
T ss_pred HHHHHHHHHhH--CCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 34455555543 3599999999999976444 78888999998765543
No 275
>PRK15482 transcriptional regulator MurR; Provisional
Probab=25.28 E-value=63 Score=33.91 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCCC--CcCHHHHHHhcCCcchhHHHHHHhcCc
Q psy8112 594 WVLLGILRNSKGN--STTIKELSEMTSIAQTDIISTLQAMNM 633 (687)
Q Consensus 594 ~~il~~l~~~~~~--~~si~~is~~Tgi~~~Dii~tL~~l~~ 633 (687)
..|++++.++..+ .+||.|||+++|+++.=|+..-+.||+
T Consensus 19 ~~Ia~yIl~n~~~v~~~si~elA~~~~vS~aTv~Rf~kkLGf 60 (285)
T PRK15482 19 QKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGA 60 (285)
T ss_pred HHHHHHHHhCHHHHHhcCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 3577777665432 579999999999999999999999998
No 276
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=25.23 E-value=60 Score=29.77 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=25.6
Q ss_pred eEEEEEEecCCCcEEEEeecccccCC--CCceeEEEEecCCcccccccceeee
Q psy8112 511 LFYILCVIDKYGAHLVGYFSKEKESP--DGNNVACILTLPPYQRQGYGKFLIS 561 (687)
Q Consensus 511 lFYVl~e~d~~g~h~vGyFSKEK~s~--~~~NLsCIl~lP~yQrkGyG~~LI~ 561 (687)
.++|+.+ +-.+||+-+=..... ....+.. .+.|.+| +|||+.++.
T Consensus 52 ~~~~~~~----~g~~vG~~~~~~~~~~~~~~~~g~-~~~~~~~-~G~g~~~~~ 98 (156)
T TIGR03585 52 RYWIVCQ----ESRPIGVISFTDINLVHKSAFWGI-YANPFCK-PGVGSVLEE 98 (156)
T ss_pred eEEEEEE----CCEEEEEEEEEecChhhCeEEEEE-EeChhhh-cCchHHHHH
Confidence 3556543 236788766544332 1233443 3667777 999987653
No 277
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=24.79 E-value=61 Score=31.12 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=23.6
Q ss_pred cEEEEeecccccCCC--CceeEEEEecCCcccccccceee
Q psy8112 523 AHLVGYFSKEKESPD--GNNVACILTLPPYQRQGYGKFLI 560 (687)
Q Consensus 523 ~h~vGyFSKEK~s~~--~~NLsCIl~lP~yQrkGyG~~LI 560 (687)
..++|+.+=-..... ...+ -+.+.|.||++|+|+.++
T Consensus 66 g~~iG~~~~~~~~~~~~~~~~-~~~v~~~~~g~G~g~~l~ 104 (186)
T PRK15130 66 GEKAGLVELVEINHVHRRAEF-QIIISPEYQGKGLATRAA 104 (186)
T ss_pred CEEEEEEEEEeecCCCCeEEE-EEEECHHHcCCCHHHHHH
Confidence 368888753221111 1233 489999999999998543
No 278
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=24.42 E-value=55 Score=33.05 Aligned_cols=50 Identities=28% Similarity=0.349 Sum_probs=36.4
Q ss_pred cEEEEe--ecccccCCC---CceeeEEEecCccccccccchhhhhhhhhhhhcCC
Q psy8112 226 AHLVGY--FSKEKESPD---GNNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 275 (687)
Q Consensus 226 ~h~vGy--FSKEk~s~~---~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~eg~ 275 (687)
.++||. ||.=....+ ..=|+=.-|.|.||++|+|+-||...=+-.+..|-
T Consensus 55 g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~ 109 (171)
T COG3153 55 GEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGA 109 (171)
T ss_pred CEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCC
Confidence 567776 565433312 24477778999999999999999999887777654
No 279
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=24.24 E-value=89 Score=23.54 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=18.0
Q ss_pred CCCCCcCHHHHHHhcCCcchhHHHHHHh
Q psy8112 603 SKGNSTTIKELSEMTSIAQTDIISTLQA 630 (687)
Q Consensus 603 ~~~~~~si~~is~~Tgi~~~Dii~tL~~ 630 (687)
+-...+||+|||...|+++.=.....+.
T Consensus 4 ~~~~~~~l~~iA~~~g~S~~~f~r~Fk~ 31 (42)
T PF00165_consen 4 NLQQKLTLEDIAEQAGFSPSYFSRLFKK 31 (42)
T ss_dssp TT-SS--HHHHHHHHTS-HHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3345699999999999987766666554
No 280
>PRK07405 RNA polymerase sigma factor SigD; Validated
Probab=24.05 E-value=1.4e+02 Score=32.46 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCCcCHHHHHHhcCCcchhHHHHHHhc
Q psy8112 604 KGNSTTIKELSEMTSIAQTDIISTLQAM 631 (687)
Q Consensus 604 ~~~~~si~~is~~Tgi~~~Dii~tL~~l 631 (687)
.|...|+++||+.+||++++|...++..
T Consensus 181 ~gr~pt~~eiA~~~~~~~~~v~~~~~~~ 208 (317)
T PRK07405 181 LGRAATIGELAEELELTPKQVREYLERA 208 (317)
T ss_pred hCCCCCHHHHHHHhCcCHHHHHHHHHHc
Confidence 3567799999999999999999998754
No 281
>KOG2748|consensus
Probab=23.88 E-value=27 Score=38.92 Aligned_cols=38 Identities=24% Similarity=0.705 Sum_probs=32.4
Q ss_pred EEEeeecCCCCeeEEEEEecCccccccccccccccccccc
Q psy8112 4 IIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRF 43 (687)
Q Consensus 4 ILsiR~~~~~G~~eYYVHYvgfNKRLDEWVt~dRLdLs~~ 43 (687)
||+.|.. .|+.+|||-|.|.|.+-.-|=+.+.|...+.
T Consensus 16 IlkkRir--KGrvEYlVKWkGWs~kyNTWEPEENILDpRL 53 (369)
T KOG2748|consen 16 ILKKRIR--KGRVEYLVKWKGWSQKYNTWEPEENILDPRL 53 (369)
T ss_pred HHHHHhh--ccceEEEEEecccccccCccCccccccCHHH
Confidence 5666765 4999999999999999999999999976544
No 282
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=23.84 E-value=1.4e+02 Score=32.01 Aligned_cols=46 Identities=15% Similarity=0.336 Sum_probs=34.8
Q ss_pred CcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeC-C---eEEEEeCHHHHHH
Q psy8112 607 STTIKELSEMTSIAQTDI---ISTLQAMNMVKYWK-G---QHVICVTPKIVEE 652 (687)
Q Consensus 607 ~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~-g---~~~i~~~~~~~~~ 652 (687)
.++-.+||++.|++..=| +..|++.|+|.... | .++-.+++.++++
T Consensus 198 rlse~eLAerlGVSRs~ireAlrkLE~aGvIe~r~LG~kGt~V~~l~~~~~~e 250 (251)
T TIGR02787 198 LLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNDKLIEE 250 (251)
T ss_pred cccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCccEeCCCChhhhhc
Confidence 689999999999997655 56678889998777 4 3554567666653
No 283
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=23.58 E-value=1.4e+02 Score=30.53 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=23.9
Q ss_pred CCCCcCHHHHHHhcCCcchhHHHHHHhc
Q psy8112 604 KGNSTTIKELSEMTSIAQTDIISTLQAM 631 (687)
Q Consensus 604 ~~~~~si~~is~~Tgi~~~Dii~tL~~l 631 (687)
.|...|++|||+.+||++++|...+...
T Consensus 100 ~g~~pt~~eia~~l~~~~~~v~~~~~~~ 127 (238)
T TIGR02393 100 LGREPTDEELAERMGMPAEKVREIKKIA 127 (238)
T ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 4677899999999999999999877644
No 284
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=23.49 E-value=2.3e+02 Score=29.02 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCCCCc-CHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCe
Q psy8112 603 SKGNST-TIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQ 640 (687)
Q Consensus 603 ~~~~~~-si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~ 640 (687)
..|+.+ |-.+||+..|++. -+.+..|+..|+|...+|.
T Consensus 26 ~pG~~LPsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~~~~~ 67 (251)
T PRK09990 26 KVGQALPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGR 67 (251)
T ss_pred CCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 357889 8999999999995 5667778888999877654
No 285
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=23.45 E-value=35 Score=29.31 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.6
Q ss_pred HHHHHHhcCCcchhHHHHHHhcCc
Q psy8112 610 IKELSEMTSIAQTDIISTLQAMNM 633 (687)
Q Consensus 610 i~~is~~Tgi~~~Dii~tL~~l~~ 633 (687)
..+.+..|..++.||..+|++||+
T Consensus 50 ~ae~~gRt~~~~~Dv~~al~~~gi 73 (77)
T PF07524_consen 50 YAEHAGRTEPNLQDVEQALEEMGI 73 (77)
T ss_pred HHHHcCCCCCCHHHHHHHHHHhCC
Confidence 356677788999999999999997
No 286
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=23.35 E-value=61 Score=24.32 Aligned_cols=24 Identities=8% Similarity=0.313 Sum_probs=17.7
Q ss_pred cCHHHHHHhcCCcchhHHHHHHhc
Q psy8112 608 TTIKELSEMTSIAQTDIISTLQAM 631 (687)
Q Consensus 608 ~si~~is~~Tgi~~~Dii~tL~~l 631 (687)
+|-+|||+.+|.++|-|-.+|..+
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l 26 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKL 26 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHH
Confidence 678999999999999887776654
No 287
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.25 E-value=2.2e+02 Score=27.77 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHH---HHHHhcCcEEEeCCeEEEEeCHHHHHHHHHhhccCCCceeecCCC
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDII---STLQAMNMVKYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTY 670 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii---~tL~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~idp~~ 670 (687)
..|++..+++ | .+|++|++.+||.+..-|- .-|-+-|-|.- .|..-|..++....+|.++.+ + .+||.
T Consensus 15 ~rIvElVRe~-G-RiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~-~G~~GvF~seqA~~dw~~~~~--~---~~~~~- 85 (127)
T PF06163_consen 15 ARIVELVREH-G-RITIKQLVAKTGASRNTVKRYLRELVARGDLYR-HGRSGVFPSEQARKDWDKARK--K---LVDPD- 85 (127)
T ss_pred HHHHHHHHHc-C-CccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEe-CCCccccccHHHHHHHHHhHH--h---hccch-
Confidence 4566766654 3 5899999999999965554 44444555543 566678888888888765532 1 37775
Q ss_pred ceEeCCCCC
Q psy8112 671 LRWTPPPKR 679 (687)
Q Consensus 671 L~W~P~~~~ 679 (687)
|.|+-++..
T Consensus 86 ~~~~~pdg~ 94 (127)
T PF06163_consen 86 LIWKLPDGE 94 (127)
T ss_pred hhhhCCCcc
Confidence 567655433
No 288
>PRK07670 RNA polymerase sigma factor SigD; Validated
Probab=23.22 E-value=1.4e+02 Score=30.76 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.6
Q ss_pred CCCcCHHHHHHhcCCcchhHHHHHH
Q psy8112 605 GNSTTIKELSEMTSIAQTDIISTLQ 629 (687)
Q Consensus 605 ~~~~si~~is~~Tgi~~~Dii~tL~ 629 (687)
|...++++||..+||+.++|..++.
T Consensus 123 ~~~~~~~eia~~l~~~~~~v~~~~~ 147 (251)
T PRK07670 123 MRNVTPKEVAAELGMTEEEVEATMN 147 (251)
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 5677899999999999999999886
No 289
>KOG3235|consensus
Probab=23.20 E-value=85 Score=31.96 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=31.5
Q ss_pred CCCcEEEEeecccccC-CC----CceeeEEEecCccccccccchhhhhh
Q psy8112 223 KYGAHLVGYFSKEKES-PD----GNNVACILTLPPYQRQGYGKFLISFS 266 (687)
Q Consensus 223 ~~g~h~vGyFSKEk~s-~~----~~NLaCIl~lP~yQrkGyG~lLI~fS 266 (687)
+.+..||||----.+. ++ .--+--|.|.-.|||.|+|+-||+.|
T Consensus 48 D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa 96 (193)
T KOG3235|consen 48 DENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQA 96 (193)
T ss_pred cCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHH
Confidence 4455899996532221 11 13367799999999999999999985
No 290
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=23.17 E-value=57 Score=38.20 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.0
Q ss_pred cCCcccccccceeeecchhcccccC
Q psy8112 547 LPPYQRQGYGKFLISFSYELSKVEG 571 (687)
Q Consensus 547 lP~yQrkGyG~~LI~fSY~Lsr~e~ 571 (687)
-|.||++|||+.||+..-.+++.+|
T Consensus 466 ~~~~rg~GiG~~Ll~~ae~~Ar~~G 490 (522)
T TIGR01211 466 DDEWQHRGYGRRLLEEAERIAAEEG 490 (522)
T ss_pred ChhHhCcCHHHHHHHHHHHHHHHCC
Confidence 4899999999999999888888765
No 291
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=23.15 E-value=1.4e+02 Score=31.54 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=41.0
Q ss_pred CCCCCCcCChhhhhHHHhhhHH-HHHHHHHcCCCCCcCHHHHHHhcCCcchhHHHHHHh
Q psy8112 573 IGSPEKPLSDLGKLSYRSYWSW-VLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQA 630 (687)
Q Consensus 573 ~G~PEkPLSdlG~~sY~sYW~~-~il~~l~~~~~~~~si~~is~~Tgi~~~Dii~tL~~ 630 (687)
.|.|.|=|| |.. .-+++|.....+..|+..||+...|+++=|-..|++
T Consensus 4 ~~~p~k~Ls----------~~~~~~ir~L~~~~p~~~t~~~Lae~F~vspe~irrILks 52 (225)
T PF06413_consen 4 PGNPPKKLS----------REAMEQIRYLHKEDPEEWTVERLAESFKVSPEAIRRILKS 52 (225)
T ss_pred CCCCCCCCC----------HHHHHHHHHHHHhCccccCHHHHHhhCCCCHHHHHHHHhc
Confidence 688999998 554 346788888788899999999999999999998886
No 292
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=22.78 E-value=1.1e+02 Score=31.28 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=31.7
Q ss_pred HHHHHHhcCCcchhHHHHHHhcCcEEEeC-CeEEEEeCHHHH
Q psy8112 610 IKELSEMTSIAQTDIISTLQAMNMVKYWK-GQHVICVTPKIV 650 (687)
Q Consensus 610 i~~is~~Tgi~~~Dii~tL~~l~~~~~~~-g~~~i~~~~~~~ 650 (687)
|.-+|-.||+.|+||+.-+...|++.... |...+..+++..
T Consensus 145 i~~~s~~~g~~p~evie~~~e~Gll~~~E~~k~~L~~~~~~a 186 (190)
T PF09840_consen 145 IAAVSYATGLDPEEVIEELLEKGLLEEGEDGKIELRKDWEQA 186 (190)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCcccccCCCceEEEecCHHHH
Confidence 35567889999999999999999998844 446666666543
No 293
>PRK07406 RNA polymerase sigma factor RpoD; Validated
Probab=22.69 E-value=1.5e+02 Score=33.29 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCCcCHHHHHHhcCCcchhHHHHHHhc
Q psy8112 605 GNSTTIKELSEMTSIAQTDIISTLQAM 631 (687)
Q Consensus 605 ~~~~si~~is~~Tgi~~~Dii~tL~~l 631 (687)
|...|+++||+.+||++++|...+...
T Consensus 237 gr~Pt~~EIA~~lg~~~e~v~~~~~~~ 263 (373)
T PRK07406 237 GRKPTEEEIAESMEMTIEKLRFIAKSA 263 (373)
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhc
Confidence 566789999999999999998876643
No 294
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.65 E-value=1.3e+02 Score=27.44 Aligned_cols=41 Identities=24% Similarity=0.431 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHhcCCc---chhHHHHHHhcCcE
Q psy8112 593 SWVLLGILRNSKGNSTTIKELSEMTSIA---QTDIISTLQAMNMV 634 (687)
Q Consensus 593 ~~~il~~l~~~~~~~~si~~is~~Tgi~---~~Dii~tL~~l~~~ 634 (687)
+..-+.+|.+ +++..++-+|-.+||+. ..|||.+|..+|++
T Consensus 9 RRLYla~Li~-S~e~~nVP~lm~~TGwPRRT~QDvikAlpglgi~ 52 (95)
T COG4519 9 RRLYLAYLID-SGETANVPELMAATGWPRRTAQDVIKALPGLGIV 52 (95)
T ss_pred HHHHHHHHHh-ccccCChHHHHHHcCCchhHHHHHHHhCcCCCeE
Confidence 3333455554 46678999999999996 68999999999995
No 295
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=22.57 E-value=66 Score=30.58 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=27.8
Q ss_pred CCCcccCCCCcEeEecchhhccCCHHHHHHHhccCCc
Q psy8112 126 PYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTY 162 (687)
Q Consensus 126 PyP~e~~~~~~lyiCe~Cl~y~~~~~~~~~H~~~C~~ 162 (687)
||-+++--...-| |=.|-+||-++..|..|.+--.+
T Consensus 45 p~Dp~lPGlGqhY-CieCaryf~t~~aL~~HkkgkvH 80 (126)
T COG5112 45 PYDPELPGLGQHY-CIECARYFITEKALMEHKKGKVH 80 (126)
T ss_pred CCCCCCCCCceee-eehhHHHHHHHHHHHHHhccchh
Confidence 7777776666666 55699999999999999864443
No 296
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=22.56 E-value=27 Score=34.74 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.2
Q ss_pred CceeEEEEecCCcccccccceeeec
Q psy8112 538 GNNVACILTLPPYQRQGYGKFLISF 562 (687)
Q Consensus 538 ~~NLsCIl~lP~yQrkGyG~~LI~f 562 (687)
--=++|+.|-|.||++|.|.-|+.-
T Consensus 65 ~gE~~~laV~pd~r~~G~G~~Ll~~ 89 (153)
T COG1246 65 LGELRSLAVHPDYRGSGRGERLLER 89 (153)
T ss_pred eeeEEEEEECHHhcCCCcHHHHHHH
Confidence 3569999999999999999876654
No 297
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=22.41 E-value=2.6e+02 Score=28.82 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=31.5
Q ss_pred CCCCCc-CHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCeEE
Q psy8112 603 SKGNST-TIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQHV 642 (687)
Q Consensus 603 ~~~~~~-si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~~~ 642 (687)
..|+.+ |-.|||+..|++. -+.+..|+..|+|...+|.-.
T Consensus 21 ~pG~~LpsE~eLae~~gVSRtpVREAL~~Le~~GlV~~~~~~G~ 64 (253)
T PRK10421 21 EAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRGGGT 64 (253)
T ss_pred CCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCCeE
Confidence 357788 7999999999995 566777888899987766533
No 298
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=22.36 E-value=82 Score=25.78 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=20.1
Q ss_pred HHHHHHcCCCCCcCHHHHHHhcCCcchhHH
Q psy8112 596 LLGILRNSKGNSTTIKELSEMTSIAQTDII 625 (687)
Q Consensus 596 il~~l~~~~~~~~si~~is~~Tgi~~~Dii 625 (687)
+|+.|....-+.||-.+||+++|+++.-|-
T Consensus 17 ~L~~l~~~G~~~vSS~~La~~~gi~~~qVR 46 (50)
T PF06971_consen 17 YLEQLKEEGVERVSSQELAEALGITPAQVR 46 (50)
T ss_dssp HHHHHHHTT-SEE-HHHHHHHHTS-HHHHH
T ss_pred HHHHHHHcCCeeECHHHHHHHHCCCHHHhc
Confidence 344455544567999999999999987764
No 299
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=22.18 E-value=2.5e+02 Score=28.94 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=31.8
Q ss_pred CCCCCc-CHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCeE
Q psy8112 603 SKGNST-TIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQH 641 (687)
Q Consensus 603 ~~~~~~-si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~~ 641 (687)
..|+.+ |-.+||++.||+. -+.+..|++.|+|...+|.-
T Consensus 28 ~pG~~LpsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~~~~~G 70 (257)
T PRK10225 28 NPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRGAG 70 (257)
T ss_pred CCCCcCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCE
Confidence 357888 7999999999994 67778888999998776553
No 300
>TIGR02366 DHAK_reg probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.
Probab=22.05 E-value=95 Score=29.62 Aligned_cols=34 Identities=3% Similarity=0.200 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCc----------chhHHHHH
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIA----------QTDIISTL 628 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~----------~~Dii~tL 628 (687)
++++.|.+..-+.|||+||+++.||+ ++|++..+
T Consensus 11 a~~~Ll~~k~~~~ITV~~I~~~AgvsR~TFY~hF~dK~dLl~~~ 54 (176)
T TIGR02366 11 AFKDLMEVQAFSKISVSDIMSTAQIRRQTFYNHFQDKYELLTWI 54 (176)
T ss_pred HHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHH
Confidence 44555666666789999999999998 47777664
No 301
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=22.00 E-value=2.1e+02 Score=28.89 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=34.3
Q ss_pred EEEEEEEcCCCcEEEEeecccc----cCCCCceeeEEEecCccccccccchhhhhhhhhhhhc
Q psy8112 215 FYILCVIDKYGAHLVGYFSKEK----ESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 273 (687)
Q Consensus 215 FYvl~~~d~~g~h~vGyFSKEk----~s~~~~NLaCIl~lP~yQrkGyG~lLI~fSY~Ls~~e 273 (687)
|+|+...+++ ..++||=|-.. .....---.-|-+.|..|+||+|+.|.+--=..++..
T Consensus 52 ~p~~V~~~~~-g~v~G~a~~~~fr~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~ 113 (169)
T COG1247 52 YPVVVAEEED-GKVLGYASAGPFRERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARAL 113 (169)
T ss_pred ceEEEEEcCC-CeEEEEEEeeeccCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhC
Confidence 3444333332 35666655332 2222233567899999999999999887554444443
No 302
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=21.86 E-value=97 Score=25.80 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=24.7
Q ss_pred CCCcCHHHHHHhcCCcchhHHHHHHhcC
Q psy8112 605 GNSTTIKELSEMTSIAQTDIISTLQAMN 632 (687)
Q Consensus 605 ~~~~si~~is~~Tgi~~~Dii~tL~~l~ 632 (687)
|...||++.+++-|+.++.|+..|+++.
T Consensus 29 gG~~~L~eA~~~~~ld~~~vl~~L~~lq 56 (56)
T PF04405_consen 29 GGNRSLEEACEEKGLDPEEVLEELNALQ 56 (56)
T ss_pred CCCchHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4458999999999999999999998763
No 303
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=21.73 E-value=50 Score=25.21 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=20.9
Q ss_pred cCCCCCcccCCCCcEeEecchhhccCCH----HHHHHHh-ccC
Q psy8112 123 YFSPYPDECKKKPKLWICEFCLKYMTME----RTYRYHK-SEC 160 (687)
Q Consensus 123 Y~SPyP~e~~~~~~lyiCe~Cl~y~~~~----~~~~~H~-~~C 160 (687)
||.+.+ .....-.|-+|.+-++.. +.|.+|+ .+|
T Consensus 6 ~F~~~~----~~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 6 HFTKIP----GDKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp CCEE------GCSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred cEEEcc----CCcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 455444 346788999999977765 7999999 555
No 304
>PHA00732 hypothetical protein
Probab=21.42 E-value=52 Score=29.13 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=19.8
Q ss_pred eEecchhhccCCHHHHHHHhc
Q psy8112 138 WICEFCLKYMTMERTYRYHKS 158 (687)
Q Consensus 138 yiCe~Cl~y~~~~~~~~~H~~ 158 (687)
|.|+.|.+-|.+...|++|+.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r 22 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHAR 22 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhh
Confidence 779999999999999999986
No 305
>KOG2462|consensus
Probab=21.36 E-value=43 Score=36.30 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.8
Q ss_pred CCcEeEecchhhccCCHHHHHHHhcc
Q psy8112 134 KPKLWICEFCLKYMTMERTYRYHKSE 159 (687)
Q Consensus 134 ~~~lyiCe~Cl~y~~~~~~~~~H~~~ 159 (687)
.++.|.|..|-|-|.++..|+.||+.
T Consensus 212 GEKPF~C~hC~kAFADRSNLRAHmQT 237 (279)
T KOG2462|consen 212 GEKPFSCPHCGKAFADRSNLRAHMQT 237 (279)
T ss_pred CCCCccCCcccchhcchHHHHHHHHh
Confidence 47899999999999999999999963
No 306
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=21.30 E-value=40 Score=29.46 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=19.7
Q ss_pred eeEEEecCccccccccchhhhhh
Q psy8112 244 VACILTLPPYQRQGYGKFLISFS 266 (687)
Q Consensus 244 LaCIl~lP~yQrkGyG~lLI~fS 266 (687)
++=|-|.|.+||+|+++-|+|..
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~a 30 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAA 30 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHH
Confidence 34488999999999999999964
No 307
>PRK07408 RNA polymerase sigma factor SigF; Reviewed
Probab=21.26 E-value=1.7e+02 Score=30.53 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.4
Q ss_pred CCCcCHHHHHHhcCCcchhHHHHHH
Q psy8112 605 GNSTTIKELSEMTSIAQTDIISTLQ 629 (687)
Q Consensus 605 ~~~~si~~is~~Tgi~~~Dii~tL~ 629 (687)
|...|++|||+.+||++++|...+.
T Consensus 127 gr~pt~~elA~~lgi~~~~v~~~~~ 151 (256)
T PRK07408 127 GRQPTDQEIAQALDISLEEWQEIKL 151 (256)
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHH
Confidence 5667899999999999999887654
No 308
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=21.23 E-value=1.5e+02 Score=23.92 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=26.7
Q ss_pred cCHHHHHHhcCCc-chhHHHHHHhcCcEEEeC
Q psy8112 608 TTIKELSEMTSIA-QTDIISTLQAMNMVKYWK 638 (687)
Q Consensus 608 ~si~~is~~Tgi~-~~Dii~tL~~l~~~~~~~ 638 (687)
+|-+||.+.||.. +...+..|+.+|+-...+
T Consensus 3 LT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~~ 34 (47)
T PF13986_consen 3 LTDEELQELTGYKRPSKQIRWLRRNGIPFVVR 34 (47)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCeeEEC
Confidence 6889999999987 678899999999976653
No 309
>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription]
Probab=21.17 E-value=1.1e+02 Score=32.72 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=25.9
Q ss_pred CCCCcCHHHHHHhcCCcchhHHHHHHhcC
Q psy8112 604 KGNSTTIKELSEMTSIAQTDIISTLQAMN 632 (687)
Q Consensus 604 ~~~~~si~~is~~Tgi~~~Dii~tL~~l~ 632 (687)
.|...|.+|||+..||..++++.+|...+
T Consensus 123 l~r~pt~~EIA~~L~i~~ee~~~~~~~~~ 151 (247)
T COG1191 123 LGREPTDEEIAEELGIDKEEYIEALLAIN 151 (247)
T ss_pred hCCCCcHHHHHHHhCCCHHHHHHHHHHhc
Confidence 35678999999999999999999999885
No 310
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=21.16 E-value=1.3e+02 Score=25.78 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHH---HHHHhcCcEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDII---STLQAMNMVK 635 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii---~tL~~l~~~~ 635 (687)
..+|+.+.......++-.||++.+|+.+..|- ..|+.+|+|.
T Consensus 5 ~~~Le~I~rsR~~Gi~q~~L~~~~~~D~r~i~~~~k~L~~~gLI~ 49 (75)
T PF04182_consen 5 YCLLERIARSRYNGITQSDLSKLLGIDPRSIFYRLKKLEKKGLIV 49 (75)
T ss_pred HHHHHHHHhcCCCCEehhHHHHHhCCCchHHHHHHHHHHHCCCEE
Confidence 35778887777778999999999999987764 5667777775
No 311
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=21.13 E-value=1.6e+02 Score=30.90 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQHV 642 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~~ 642 (687)
..|+++|.+. ..++++||++.+|++..=| +..|++.|++....|+-+
T Consensus 8 ~~Il~~l~~~--~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~r~~gga~ 57 (251)
T PRK13509 8 QILLELLAQL--GFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGAE 57 (251)
T ss_pred HHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCcc
Confidence 4577888753 4699999999999996533 556788899988777654
No 312
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=21.02 E-value=1.5e+02 Score=30.43 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCcEEEeCCeE
Q psy8112 593 SWVLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNMVKYWKGQH 641 (687)
Q Consensus 593 ~~~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~~~~~~g~~ 641 (687)
...|+.+|+.. |..+|-.+||++.||....| +..|+..++|.-.++.+
T Consensus 6 ~~~i~~~l~~~-~~~~~a~~i~k~l~i~k~~vNr~LY~L~~~~~v~~~~~~p 56 (183)
T PHA02701 6 ASLILTLLSSS-GDKLPAKRIAKELGISKHEANRCLYRLLESDAVSCEDGCP 56 (183)
T ss_pred HHHHHHHHHhc-CCCCcHHHHHHHhCccHHHHHHHHHHHhhcCcEecCCCCC
Confidence 35788888854 54499999999999998776 66788889987766653
No 313
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=20.94 E-value=3e+02 Score=27.62 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCCe--EEEEeCHHHHHHHH
Q psy8112 603 SKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKGQ--HVICVTPKIVEEHI 654 (687)
Q Consensus 603 ~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g~--~~i~~~~~~~~~~~ 654 (687)
..|..++-++||+..|++. -+.+..|+..|+|...++. .+..++.+.+.+..
T Consensus 30 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGLV~~~~~~g~~v~~~~~~~~~ei~ 86 (221)
T PRK11414 30 KPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVAPAQAFTVPEVSKRQLDEIN 86 (221)
T ss_pred CCCCccCHHHHHHHHCCCchhHHHHHHHHHHCCCEEecCCCceeecCCCHHHHHHHH
Confidence 3578899999999999995 5666777788999876554 33345666555544
No 314
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=20.87 E-value=1.2e+02 Score=29.22 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHhcCCcchhHH---HHHHhcCcEEE
Q psy8112 594 WVLLGILRNSKGNSTTIKELSEMTSIAQTDII---STLQAMNMVKY 636 (687)
Q Consensus 594 ~~il~~l~~~~~~~~si~~is~~Tgi~~~Dii---~tL~~l~~~~~ 636 (687)
..|++.|... ..+|..+||+++|+++..|. ..|++-|+|+-
T Consensus 12 ~~Il~~Lq~d--~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 12 RGILEALMEN--ARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 4677888653 46899999999999998875 56777799873
No 315
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=20.60 E-value=49 Score=28.18 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=24.5
Q ss_pred CCcEeEecchhhccCCHHHHHHHhccCC
Q psy8112 134 KPKLWICEFCLKYMTMERTYRYHKSECT 161 (687)
Q Consensus 134 ~~~lyiCe~Cl~y~~~~~~~~~H~~~C~ 161 (687)
.+.++-|..|...|..+.+|.||..+--
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 4678999999999999999999987643
No 316
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=20.47 E-value=1.5e+02 Score=25.01 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcc---hhHHHHHHhcCcEEEeCC-----eEEEEeCHHH
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQ---TDIISTLQAMNMVKYWKG-----QHVICVTPKI 649 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~---~Dii~tL~~l~~~~~~~g-----~~~i~~~~~~ 649 (687)
.|+..|.... .+|..+|++.+++++ ...+..|++.|+|....+ ...+.++++-
T Consensus 14 ~il~~l~~~~--~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g 74 (101)
T smart00347 14 LVLRILYEEG--PLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEG 74 (101)
T ss_pred HHHHHHHHcC--CcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhH
Confidence 5666666532 589999999999986 455777888899986643 2345666653
No 317
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=20.45 E-value=46 Score=35.73 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=16.3
Q ss_pred ceeeE--EEecCccccccccchhh
Q psy8112 242 NNVAC--ILTLPPYQRQGYGKFLI 263 (687)
Q Consensus 242 ~NLaC--Il~lP~yQrkGyG~lLI 263 (687)
.|-++ |-|.|.|||||+++.+-
T Consensus 187 ~~~~EI~I~T~~~yR~kGLA~~~a 210 (265)
T PF12746_consen 187 ENGIEIDIETHPEYRGKGLATAVA 210 (265)
T ss_dssp TTEEEEEEEE-CCCTTSSHHHHHH
T ss_pred CCEEEEEEEECHHhhcCCHHHHHH
Confidence 34567 89999999999877653
No 318
>PF09497 Med12: Transcription mediator complex subunit Med12; InterPro: IPR019035 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med12 is a component of the evolutionarily conserved Mediator complex []. The Med12 subunit may specifically regulate transcription of targets of the Wnt signaling pathway and SHH signaling pathway. Med12 is a negative regulator of the Gli3-dependent sonic hedgehog signaling pathway via its interaction with Gli3 within the Mediator. A complex is formed between Med12, Med13, CDK8 and CycC which is responsible for suppression of transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.30 E-value=59 Score=28.00 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCCCCCCChhhhhHHHhhhHHHHHHHhhcCCC
Q psy8112 276 IGSPEKPLSDLGKLSYRSYWSWVLLGILRNSNF 308 (687)
Q Consensus 276 ~G~PEkPLSdlG~~sY~sYW~~~i~~~L~~~~~ 308 (687)
.++|..||+.|++..=.-+.++.|++.|.++++
T Consensus 22 La~~~~pL~~Lsk~iPhg~k~~~ll~~l~~~~V 54 (64)
T PF09497_consen 22 LANPNVPLRKLSKKIPHGIKKEELLEQLCEYNV 54 (64)
T ss_pred HcCCCCCHHHHHHHCCCcccHHHHHHHHHHcCC
Confidence 589999999999998888999999999988664
No 319
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=20.28 E-value=2.3e+02 Score=30.52 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCCCcCHHHHHHhcCCcchhH---HHHHHhcCc-EEEeCC-eEE-----EEeCHHHHH
Q psy8112 595 VLLGILRNSKGNSTTIKELSEMTSIAQTDI---ISTLQAMNM-VKYWKG-QHV-----ICVTPKIVE 651 (687)
Q Consensus 595 ~il~~l~~~~~~~~si~~is~~Tgi~~~Di---i~tL~~l~~-~~~~~g-~~~-----i~~~~~~~~ 651 (687)
.|++.|.. +..+|.++||++.||+..-| +.+|++.|+ +...+| .+. ..+++..+.
T Consensus 8 ~il~~L~~--~~~~s~~~LA~~lgvsr~tV~~~l~~L~~~G~~i~~~~~~Gy~L~~~~~~l~~~~l~ 72 (319)
T PRK11886 8 QLLSLLAD--GDFHSGEQLGEELGISRAAIWKHIQTLEEWGLDIFSVKGKGYRLAEPLDLLDPERIS 72 (319)
T ss_pred HHHHHHHc--CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCceEEecCCeEEecCccccCCHHHHH
Confidence 56777764 45689999999999998777 888889999 655454 343 334555554
Done!