RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8112
(687 letters)
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 408 bits (1051), Expect = e-136
Identities = 165/312 (52%), Positives = 207/312 (66%), Gaps = 18/312 (5%)
Query: 1 PAEIIQNRYNELE--NCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAI 58
P ++I+ R N +EYYVHY FNRRLDEWV+ + D+ E
Sbjct: 72 PVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKL-----EQLDLDTVETVGDEK--- 123
Query: 59 DLLDQSDRKITRNQKRRHDEINHVQKTYEEMDPTTAALEKEHEAITKVKYIDKIMIGKCE 118
+ K+TR+QKR+ DE + + +EE+D A +EHE TKVK I I +G+ E
Sbjct: 124 VEDKVASLKMTRHQKRKIDETHVEEG-HEELDA---ASLREHEEFTKVKNIATIELGRYE 179
Query: 119 IDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCG---- 174
IDTWYFSP+P E KL+ CEFCLK+M + + H +C HPPG EIYR
Sbjct: 180 IDTWYFSPFPPEYNDCSKLYFCEFCLKFMKRKEQLQRHMKKCDLKHPPGDEIYRHPTRQE 239
Query: 175 NISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSK 234
+S++EVDG +K+YCQNLC LAKLFLDHKTLY+DVD FLFY+LC D G H+VGYFSK
Sbjct: 240 GLSMFEVDGKKNKVYCQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSK 299
Query: 235 EKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSY 294
EK S + N+ACILTLPPYQR+GYGKFLI+FSYELSK EG +G+PE+PLSDLG +SYR Y
Sbjct: 300 EKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREGKVGTPERPLSDLGLVSYRGY 359
Query: 295 WSWVLLGILRNS 306
W+ VLL IL+
Sbjct: 360 WTRVLLEILKKH 371
Score = 368 bits (946), Expect = e-121
Identities = 141/228 (61%), Positives = 176/228 (77%), Gaps = 7/228 (3%)
Query: 454 KSECTYCHPPGKEIYRCG----NISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDP 509
+C HPPG EIYR +S++EVDG +K+YCQNLC LAKLFLDHKTLY+DVD
Sbjct: 218 MKKCDLKHPPGDEIYRHPTRQEGLSMFEVDGKKNKVYCQNLCYLAKLFLDHKTLYYDVDL 277
Query: 510 FLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKV 569
FLFY+LC D G H+VGYFSKEK S + N+ACILTLPPYQR+GYGKFLI+FSYELSK
Sbjct: 278 FLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKR 337
Query: 570 EGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQ 629
EG +G+PE+PLSDLG +SYR YW+ VLL IL+ KGN +IKELS+MT+I DI+STLQ
Sbjct: 338 EGKVGTPERPLSDLGLVSYRGYWTRVLLEILKKHKGN-ISIKELSDMTAIKAEDIVSTLQ 396
Query: 630 AMNMVKYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRWTPPP 677
++N+++Y KGQHVIC PK++EEH+++ R L+VDP+ L WTP
Sbjct: 397 SLNLIQYRKGQHVICADPKVLEEHLKA--AGRGGLEVDPSKLIWTPYK 442
Score = 165 bits (419), Expect = 2e-44
Identities = 65/139 (46%), Positives = 80/139 (57%), Gaps = 27/139 (19%)
Query: 324 FPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCG----NISIYEVD 379
FP E KL+ CEFCLK+M + + H +C HPPG EIYR +S++EVD
Sbjct: 188 FPPEYNDCSKLYFCEFCLKFMKRKEQLQRHMKKCDLKHPPGDEIYRHPTRQEGLSMFEVD 247
Query: 380 GSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYFDVDPFLFYILC 439
G +K+YCQNLC LAKLFLDHKTLY+DVD FLFY+LC D D
Sbjct: 248 GKKNKVYCQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECD--DR---------------- 289
Query: 440 VIDKYGAHLVGYFSKSECT 458
G H+VGYFSK + +
Sbjct: 290 -----GCHMVGYFSKEKHS 303
>gnl|CDD|216741 pfam01853, MOZ_SAS, MOZ/SAS family. This region of these proteins
has been suggested to be homologous to
acetyltransferases.
Length = 189
Score = 332 bits (854), Expect = e-111
Identities = 135/188 (71%), Positives = 153/188 (81%), Gaps = 1/188 (0%)
Query: 460 CHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVID 519
HPPG EIYR GNIS++EVDG KLYCQNLCLLAKLFLDHKTLY+DVDPFLFYIL D
Sbjct: 2 RHPPGNEIYRKGNISVFEVDGRKQKLYCQNLCLLAKLFLDHKTLYYDVDPFLFYILTETD 61
Query: 520 KYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKP 579
+ G H+VGYFSKEKES + N+ACILTLPPYQR+GYGK LI FSYELS+ EG IGSPEKP
Sbjct: 62 ETGCHIVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRKEGKIGSPEKP 121
Query: 580 LSDLGKLSYRSYWSWVLLGILRNSKGNST-TIKELSEMTSIAQTDIISTLQAMNMVKYWK 638
LSDLG LSYRSYWS LL +L + TIKELS+MT I DIISTLQ++NM+KY+K
Sbjct: 122 LSDLGLLSYRSYWSQTLLELLLEHRDEHKITIKELSKMTGITVEDIISTLQSLNMIKYYK 181
Query: 639 GQHVICVT 646
GQH+IC+
Sbjct: 182 GQHIICLQ 189
Score = 277 bits (711), Expect = 9e-90
Identities = 109/142 (76%), Positives = 119/142 (83%)
Query: 163 CHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVID 222
HPPG EIYR GNIS++EVDG KLYCQNLCLLAKLFLDHKTLY+DVDPFLFYIL D
Sbjct: 2 RHPPGNEIYRKGNISVFEVDGRKQKLYCQNLCLLAKLFLDHKTLYYDVDPFLFYILTETD 61
Query: 223 KYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKP 282
+ G H+VGYFSKEKES + N+ACILTLPPYQR+GYGK LI FSYELS+ EG IGSPEKP
Sbjct: 62 ETGCHIVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRKEGKIGSPEKP 121
Query: 283 LSDLGKLSYRSYWSWVLLGILR 304
LSDLG LSYRSYWS LL +L
Sbjct: 122 LSDLGLLSYRSYWSQTLLELLL 143
Score = 132 bits (333), Expect = 2e-35
Identities = 56/97 (57%), Positives = 62/97 (63%), Gaps = 23/97 (23%)
Query: 360 CHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVID 419
HPPG EIYR GNIS++EVDG KLYCQNLCLLAKLFL
Sbjct: 2 RHPPGNEIYRKGNISVFEVDGRKQKLYCQNLCLLAKLFL--------------------- 40
Query: 420 KYDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSE 456
DHKTLY+DVDPFLFYIL D+ G H+VGYFSK +
Sbjct: 41 --DHKTLYYDVDPFLFYILTETDETGCHIVGYFSKEK 75
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 326 bits (838), Expect = e-107
Identities = 136/219 (62%), Positives = 171/219 (78%), Gaps = 3/219 (1%)
Query: 90 DPTTAALEKEHEAITKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTM 149
DP A LE+EHE TKVK I+ I +GK E+DTWY+SPYP+ KL+ICE+CLKYM
Sbjct: 1 DPVLAELEREHEETTKVKNIEMIELGKYEMDTWYYSPYPEPYASCTKLYICEYCLKYMRK 60
Query: 150 ERTYRYHKSECTYCHPPGKEIYRC---GNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTL 206
+++ H ++C PPG IY G +S++EVDG K+YCQNLCLLAKLFLDHKTL
Sbjct: 61 KKSLLRHLAKCDIRQPPGGGIYGAVTEGPLSVFEVDGKKAKVYCQNLCLLAKLFLDHKTL 120
Query: 207 YFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFS 266
Y+DVDPFLFY++ +D +G+H+VGYFSKEK S + N+ACILTLPPYQR+GYGKFLISF+
Sbjct: 121 YYDVDPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFA 180
Query: 267 YELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRN 305
YELSK EG +G+PE+PLSDLGK+S+RSYW+ VLL LR+
Sbjct: 181 YELSKREGKVGTPERPLSDLGKVSFRSYWTRVLLEQLRD 219
Score = 311 bits (799), Expect = e-101
Identities = 133/227 (58%), Positives = 174/227 (76%), Gaps = 7/227 (3%)
Query: 454 KSECTYCHPPGKEIYRC---GNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPF 510
++C PPG IY G +S++EVDG K+YCQNLCLLAKLFLDHKTLY+DVDPF
Sbjct: 68 LAKCDIRQPPGGGIYGAVTEGPLSVFEVDGKKAKVYCQNLCLLAKLFLDHKTLYYDVDPF 127
Query: 511 LFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 570
LFY++ +D +G+H+VGYFSKEK S + N+ACILTLPPYQR+GYGKFLISF+YELSK E
Sbjct: 128 LFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKRE 187
Query: 571 GLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQA 630
G +G+PE+PLSDLGK+S+RSYW+ VLL LR+ KG+ +IK+LS T I DI+STLQ+
Sbjct: 188 GKVGTPERPLSDLGKVSFRSYWTRVLLEQLRDVKGD-VSIKDLSLATGIRGEDIVSTLQS 246
Query: 631 MNMVKYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRWTPPP 677
+N++KYWKGQHVI V ++++EH ++R ++VD + W P P
Sbjct: 247 LNLIKYWKGQHVIHVDQRVLDEHWAKFAHQRV-IEVDCLH--WQPLP 290
Score = 147 bits (373), Expect = 8e-40
Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 26/134 (19%)
Query: 324 FPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRC---GNISIYEVDG 380
+P KL+ICE+CLKYM +++ H ++C PPG IY G +S++EVDG
Sbjct: 38 YPEPYASCTKLYICEYCLKYMRKKKSLLRHLAKCDIRQPPGGGIYGAVTEGPLSVFEVDG 97
Query: 381 SFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYFDVDPFLFYILCV 440
K+YCQNLCLLAKLFL DHKTLY+DVDPFLFY++
Sbjct: 98 KKAKVYCQNLCLLAKLFL-----------------------DHKTLYYDVDPFLFYVMTE 134
Query: 441 IDKYGAHLVGYFSK 454
+D +G+H+VGYFSK
Sbjct: 135 VDDHGSHIVGYFSK 148
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 326 bits (837), Expect = e-105
Identities = 147/308 (47%), Positives = 193/308 (62%), Gaps = 10/308 (3%)
Query: 2 AEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMS-----EQHWKNKENQ 56
AEI++ + ++YVHY NRRLDEW+ I N +S +Q K K+ +
Sbjct: 23 AEILEINTRKSR--IKFYVHYVELNRRLDEWITADLI-NLGAAISIPKRKKQTEKGKKEK 79
Query: 57 AIDLLDQSDRKITRNQKRRHDEINHVQKTYEEMDPTTAALEKEHEAITKVKYIDKIMIGK 116
+ D+ D Q I++ ++ + + A +VK I++I +G
Sbjct: 80 KPKVSDRMDLDNENVQLEMLYSISNEREIRQLRFGGSKVQNPHEGA--RVKNINEIKLGN 137
Query: 117 CEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNI 176
EI+ WYFSPYP+E ++ICEFCLKY + + H+ +C+ HPPG EIYR I
Sbjct: 138 YEIEPWYFSPYPEEFSDLDIVYICEFCLKYYGSQTSLVRHRKKCSLQHPPGNEIYRDKYI 197
Query: 177 SIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEK 236
S +E+DG +LYC+NLCLL+KLFLDHKTLY+DVDPFLFY+L G HLVGYFSKEK
Sbjct: 198 SFFEIDGRKQRLYCRNLCLLSKLFLDHKTLYYDVDPFLFYVLTERGDTGCHLVGYFSKEK 257
Query: 237 ESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWS 296
ES N+ACILTLPPYQR+GYGK LI FSY LS+ EG +GSPEKPLSDLG LSYR+YWS
Sbjct: 258 ESEQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQKEGKVGSPEKPLSDLGLLSYRAYWS 317
Query: 297 WVLLGILR 304
++ +L
Sbjct: 318 EIVAKLLL 325
Score = 287 bits (735), Expect = 2e-90
Identities = 123/253 (48%), Positives = 163/253 (64%), Gaps = 10/253 (3%)
Query: 421 YDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSECTYCHPPGKEIYRCGNISIYEVDG 480
D +Y + F H + +C+ HPPG EIYR IS +E+DG
Sbjct: 153 SDLDIVY--ICEFCLKYYGSQTSLVRH------RKKCSLQHPPGNEIYRDKYISFFEIDG 204
Query: 481 SFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNN 540
+LYC+NLCLL+KLFLDHKTLY+DVDPFLFY+L G HLVGYFSKEKES N
Sbjct: 205 RKQRLYCRNLCLLSKLFLDHKTLYYDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYN 264
Query: 541 VACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGIL 600
+ACILTLPPYQR+GYGK LI FSY LS+ EG +GSPEKPLSDLG LSYR+YWS ++ +L
Sbjct: 265 LACILTLPPYQRRGYGKLLIDFSYLLSQKEGKVGSPEKPLSDLGLLSYRAYWSEIVAKLL 324
Query: 601 RNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVICVTPKIVEEHIQSTQYK 660
T I E+S+ T ++ D+I TL+A+N+++ +KGQ++I + + +++ K
Sbjct: 325 LKMDKEITDINEISKETGMSTDDVIHTLEALNILREYKGQYIISLNSDKLHNYLRLWSKK 384
Query: 661 RPRLQVDPTYLRW 673
R R ++P L W
Sbjct: 385 RRR--INPDLLLW 395
Score = 143 bits (363), Expect = 2e-37
Identities = 61/131 (46%), Positives = 76/131 (58%), Gaps = 23/131 (17%)
Query: 324 FPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFH 383
+P E ++ICEFCLKY + + H+ +C+ HPPG EIYR IS +E+DG
Sbjct: 148 YPEEFSDLDIVYICEFCLKYYGSQTSLVRHRKKCSLQHPPGNEIYRDKYISFFEIDGRKQ 207
Query: 384 KLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYFDVDPFLFYILCVIDK 443
+LYC+NLCLL+KLFLDHKTLY+DVD PFLFY+L
Sbjct: 208 RLYCRNLCLLSKLFLDHKTLYYDVD-----------------------PFLFYVLTERGD 244
Query: 444 YGAHLVGYFSK 454
G HLVGYFSK
Sbjct: 245 TGCHLVGYFSK 255
>gnl|CDD|178777 PLN03239, PLN03239, histone acetyltransferase; Provisional.
Length = 351
Score = 269 bits (688), Expect = 3e-84
Identities = 138/295 (46%), Positives = 181/295 (61%), Gaps = 25/295 (8%)
Query: 18 YYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAIDLLDQSDRKITRNQKRRHD 77
YYVHY FNRR+DEW+ K + + H + + + D
Sbjct: 1 YYVHYKDFNRRMDEWISKDKSNEEILALPSDH--------LATHTVGEDVVATIAAPELD 52
Query: 78 EINHVQKTYEEMDPTTAALEKEHEAITKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPK- 136
E +E +D AAL KEHE +TKVK + + +G ++DTWYFSP P E K
Sbjct: 53 E-------HEGLD--DAAL-KEHEEVTKVKNVAFLELGPYQMDTWYFSPLPKELFKAGGF 102
Query: 137 ---LWICEFCLKYMTME-RTYRYHKSEC--TYCHPPGKEIYRCGNISIYEVDGSFHKLYC 190
L++CEF + + R+ E HPPG EIYRCG+++++EVDG ++YC
Sbjct: 103 IDVLYVCEFSFGFFARKSELLRFQAKELPKERRHPPGNEIYRCGDLAMFEVDGFEERIYC 162
Query: 191 QNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTL 250
QNLC +AKLFLDHKTLYFDVDPFLFY+LC +D+ G H VGY+SKEK S G N+ACILT
Sbjct: 163 QNLCYIAKLFLDHKTLYFDVDPFLFYVLCEVDERGFHPVGYYSKEKYSDVGYNLACILTF 222
Query: 251 PPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRN 305
P +QR+GYG+FLI+FSYELSK E +GSPEKP+SDLG+ +Y YW ++ L N
Sbjct: 223 PAHQRKGYGRFLIAFSYELSKKEEKVGSPEKPMSDLGQQAYIPYWGSTIVDFLLN 277
Score = 249 bits (638), Expect = 7e-77
Identities = 116/217 (53%), Positives = 155/217 (71%), Gaps = 4/217 (1%)
Query: 461 HPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDK 520
HPPG EIYRCG+++++EVDG ++YCQNLC +AKLFLDHKTLYFDVDPFLFY+LC +D+
Sbjct: 136 HPPGNEIYRCGDLAMFEVDGFEERIYCQNLCYIAKLFLDHKTLYFDVDPFLFYVLCEVDE 195
Query: 521 YGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPL 580
G H VGY+SKEK S G N+ACILT P +QR+GYG+FLI+FSYELSK E +GSPEKP+
Sbjct: 196 RGFHPVGYYSKEKYSDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEEKVGSPEKPM 255
Query: 581 SDLGKLSYRSYWSWVLLGILRNSKGNST--TIKELSEMTSIAQTDIISTLQAMNMVKYWK 638
SDLG+ +Y YW ++ L N GN + +I ++++ TSI DI+ L + ++K+
Sbjct: 256 SDLGQQAYIPYWGSTIVDFLLNHSGNDSSLSIMDIAKKTSIMAEDIVFALNQLGILKFIN 315
Query: 639 GQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRWTP 675
G + I ++EE + K PR VDP+ L WTP
Sbjct: 316 GIYFIAAEKGLLEELAEKHPVKEPR--VDPSKLHWTP 350
Score = 115 bits (289), Expect = 5e-28
Identities = 56/126 (44%), Positives = 74/126 (58%), Gaps = 26/126 (20%)
Query: 334 LWICEFCLKYMTME-RTYRYHKSEC--TYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNL 390
L++CEF + + R+ E HPPG EIYRCG+++++EVDG ++YCQNL
Sbjct: 106 LYVCEFSFGFFARKSELLRFQAKELPKERRHPPGNEIYRCGDLAMFEVDGFEERIYCQNL 165
Query: 391 CLLAKLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYFDVDPFLFYILCVIDKYGAHLVG 450
C +AKLFLDHKTLYF DVDPFLFY+LC +D+ G H VG
Sbjct: 166 CYIAKLFLDHKTLYF-----------------------DVDPFLFYVLCEVDERGFHPVG 202
Query: 451 YFSKSE 456
Y+SK +
Sbjct: 203 YYSKEK 208
>gnl|CDD|173359 PTZ00064, PTZ00064, histone acetyltransferase; Provisional.
Length = 552
Score = 273 bits (700), Expect = 2e-83
Identities = 133/301 (44%), Positives = 188/301 (62%), Gaps = 18/301 (5%)
Query: 10 NELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSE----------QHWKNKENQAID 59
++++ +E+YVH+ G NRRLD WV+ I S FD+ E Q K ++
Sbjct: 143 SQIKEDYEFYVHFRGLNRRLDRWVKGKDIKLS-FDVEELNDPNLIERFQKQGIKFISSLS 201
Query: 60 LLDQSDRKITRNQKRRHDEIN----HVQKTYEEMDPTTAALEKEHEAITKVKYIDKIMIG 115
+ + +++ +++KR ++ +E MD +A+ +HE T+++ I ++ IG
Sbjct: 202 VSNSANKSGNKSKKRNVGVLDISDGEDPDEHEGMD--HSAIL-DHEETTRLRTIGRVRIG 258
Query: 116 KCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGN 175
K +DTWYFSP PDE + L CE+CL + E H S C HPPG EIYR N
Sbjct: 259 KFILDTWYFSPLPDEYQNVDTLHFCEYCLDFFCFEDELIRHLSRCQLRHPPGNEIYRKDN 318
Query: 176 ISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYFSKE 235
IS++E+DG+ + Y +NLC LAKLFLDHKTL +DV+PFLFYI+ +D+ G H+VGYFSKE
Sbjct: 319 ISVFEIDGALTRGYAENLCYLAKLFLDHKTLQYDVEPFLFYIVTEVDEEGCHIVGYFSKE 378
Query: 236 KESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYW 295
K S N+ACILTLP YQR+GYGK L+ SY+LS EG G PE+PLSDLG+ Y ++W
Sbjct: 379 KVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEGKWGHPERPLSDLGRAIYNNWW 438
Query: 296 S 296
+
Sbjct: 439 A 439
Score = 206 bits (524), Expect = 2e-58
Identities = 107/250 (42%), Positives = 144/250 (57%), Gaps = 24/250 (9%)
Query: 455 SECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYI 514
S C HPPG EIYR NIS++E+DG+ + Y +NLC LAKLFLDHKTL +DV+PFLFYI
Sbjct: 301 SRCQLRHPPGNEIYRKDNISVFEIDGALTRGYAENLCYLAKLFLDHKTLQYDVEPFLFYI 360
Query: 515 LCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIG 574
+ +D+ G H+VGYFSKEK S N+ACILTLP YQR+GYGK L+ SY+LS EG G
Sbjct: 361 VTEVDEEGCHIVGYFSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEGKWG 420
Query: 575 SPEKPLSDLGKLSYRSYW----SWVLLGILRNSK--------------GNSTTIKELSEM 616
PE+PLSDLG+ Y ++W S LL + +K I +
Sbjct: 421 HPERPLSDLGRAIYNNWWAHRISEYLLEYFKQNKICERGGSKQPLQVSNYWKFIDNVVRS 480
Query: 617 TSIAQTDIISTLQAMNMVKYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRWTP- 675
T I + D+I L+ +++ K QH I + ++ ++ + RP + + Y W P
Sbjct: 481 TGIRREDVIRILEENGIMRNIKDQHYIFCNQEFLKGIVKRS--GRPGITLIDKYFNWVPF 538
Query: 676 ---PPKRVHS 682
PP V S
Sbjct: 539 SRAPPSEVES 548
Score = 121 bits (304), Expect = 7e-29
Identities = 58/138 (42%), Positives = 75/138 (54%), Gaps = 23/138 (16%)
Query: 324 FPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFH 383
P E + L CE+CL + E H S C HPPG EIYR NIS++E+DG+
Sbjct: 270 LPDEYQNVDTLHFCEYCLDFFCFEDELIRHLSRCQLRHPPGNEIYRKDNISVFEIDGALT 329
Query: 384 KLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYFDVDPFLFYILCVIDK 443
+ Y +NLC LAKLFL DHKTL +DV+PFLFYI+ +D+
Sbjct: 330 RGYAENLCYLAKLFL-----------------------DHKTLQYDVEPFLFYIVTEVDE 366
Query: 444 YGAHLVGYFSKSECTYCH 461
G H+VGYFSK + + H
Sbjct: 367 EGCHIVGYFSKEKVSLLH 384
>gnl|CDD|152153 pfam11717, Tudor-knot, RNA binding activity-knot of a
chromodomain. This is a novel knotted tudor domain
which is required for binding to RNA. The know
influences the loop conformation of the helical turn
Ht2 - residues 61-6 3- that is located at the side
opposite the knot in the tudor domain-chromodomain;
stabilisation of Ht2 is essential for RNA binding.
Length = 55
Score = 58.4 bits (142), Expect = 3e-11
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRI 38
AEI+ E +EYYVHY GFN+RLDEWV + RI
Sbjct: 18 EAEILS--IRPKEGKYEYYVHYVGFNKRLDEWVDRDRI 53
>gnl|CDD|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain
is a conserved region of around 50 amino acids found in
a variety of chromosomal proteins, which appear to play
a role in the functional organization of the eukaryotic
nucleus. Experimental evidence implicates the chromo
domain in the binding activity of these proteins to
methylated histone tails and maybe RNA. May occur as
single instance, in a tandem arrangement or followd by
a related "chromo shadow" domain.
Length = 55
Score = 33.8 bits (78), Expect = 0.017
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRI 38
+I+ +R + +EY V + G++ D W + +
Sbjct: 5 VEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENL 42
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 32.6 bits (75), Expect = 0.054
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 228 LVGY--FSKEKESPDGNNVACILTLPPYQRQGYGKFLISF 265
+VG+ S + D + + LP Y+ +G G L+
Sbjct: 10 IVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEA 49
Score = 32.6 bits (75), Expect = 0.054
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 525 LVGY--FSKEKESPDGNNVACILTLPPYQRQGYGKFLISF 562
+VG+ S + D + + LP Y+ +G G L+
Sbjct: 10 IVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEA 49
>gnl|CDD|214605 smart00298, CHROMO, Chromatin organization modifier domain.
Length = 55
Score = 32.2 bits (74), Expect = 0.078
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMN 40
+I+ +R+ + EY V + G++ D W + ++N
Sbjct: 4 VEKILDHRWKKKGE-LEYLVKWKGYSYSEDTWEPEENLLN 42
>gnl|CDD|218250 pfam04760, IF2_N, Translation initiation factor IF-2, N-terminal
region. This conserved feature at the N-terminus of
bacterial translation initiation factor IF2 has recently
had its structure solved. It shows structural similarity
to the tRNA anticodon Stem Contact Fold domains of the
methionyl-tRNA and glutaminyl-tRNA synthetases, and a
similar fold is also found in the B5 domain of the
phenylalanine-tRNA synthetase.
Length = 52
Score = 29.7 bits (68), Expect = 0.52
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 608 TTIKELSEMTSIAQTDIISTLQAMNMVK 635
+ EL++ ++ ++I L + ++K
Sbjct: 4 IRVYELAKELGVSSKELIKKLFKLGIMK 31
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 33.3 bits (76), Expect = 0.58
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 11/53 (20%)
Query: 606 NSTTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVICVTP-KIVEEHIQST 657
+ TI+ELS + I +T+II +L + KG I VT +I++ I S
Sbjct: 164 SPLTIQELSTLLCIPETEIIKSL-------FLKG---ISVTVNQIIDISIISQ 206
>gnl|CDD|235563 PRK05689, fliJ, flagellar biosynthesis chaperone; Validated.
Length = 147
Score = 31.1 bits (71), Expect = 1.0
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 19 YVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQA 57
+++Y F ++L++ + + R W K + A
Sbjct: 66 WINYQQFLQQLEKAITQQR-------QQLTQWTQKVDNA 97
>gnl|CDD|128778 smart00502, BBC, B-Box C-terminal domain. Coiled coil region
C-terminal to (some) B-Box domains.
Length = 127
Score = 30.3 bits (69), Expect = 1.2
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 5 IQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAIDLLDQS 64
++ ++E + +D L + K + + E + KEN+ L Q
Sbjct: 33 VEENAADVEAQIK--AAFD----ELRNALNKRKKQ-----LLEDLEEQKENKLKVLEQQ- 80
Query: 65 DRKITRNQKRRHDEINHVQKTYEEMDPTTAALEKEHEA 102
+T+ Q++ IN ++ DPT L K+
Sbjct: 81 LESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLII 118
>gnl|CDD|237470 PRK13688, PRK13688, hypothetical protein; Provisional.
Length = 156
Score = 30.4 bits (69), Expect = 1.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 250 LPPYQRQGYGKFLISF 265
LP YQ +GYG+ L+ F
Sbjct: 88 LPKYQNRGYGEMLVDF 103
Score = 30.4 bits (69), Expect = 1.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 547 LPPYQRQGYGKFLISF 562
LP YQ +GYG+ L+ F
Sbjct: 88 LPKYQNRGYGEMLVDF 103
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 30.9 bits (70), Expect = 2.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 22 YDGFNRRLDEWVQKHRIMNSRFDMS 46
Y + L + QK I+NSR +++
Sbjct: 181 YGAHDNFLSDQAQKGAILNSRVELN 205
>gnl|CDD|216007 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 28.4 bits (64), Expect = 2.7
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 222 DKYGAHLVGY--FSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIG 277
+ LVG+ S E + + + P Y+ +G G L+ E ++ GL
Sbjct: 1 AEEDGELVGFASLSIIDEEGNVAEIEGLAVDPEYRGKGIGTALLEALEEYARELGLKR 58
Score = 28.4 bits (64), Expect = 2.7
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 519 DKYGAHLVGY--FSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIG 574
+ LVG+ S E + + + P Y+ +G G L+ E ++ GL
Sbjct: 1 AEEDGELVGFASLSIIDEEGNVAEIEGLAVDPEYRGKGIGTALLEALEEYARELGLKR 58
>gnl|CDD|222340 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2. This domain
has N-acetyltransferase activity. It has a GCN5-related
N-acetyltransferase (GNAT) fold.
Length = 169
Score = 29.0 bits (66), Expect = 5.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 247 ILTLPPYQRQGYGKFLISFSYELSKVEGL 275
I P YQR GYG L+ + EG+
Sbjct: 94 IAVHPDYQRMGYGSRLLELLEQYYIPEGV 122
Score = 29.0 bits (66), Expect = 5.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 544 ILTLPPYQRQGYGKFLISFSYELSKVEGL 572
I P YQR GYG L+ + EG+
Sbjct: 94 IAVHPDYQRMGYGSRLLELLEQYYIPEGV 122
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 30.0 bits (67), Expect = 5.9
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 28 RLDEWVQKHRIMNSRFDMSEQHWKNKENQAIDLLDQ---------SDRKITRNQKRRHDE 78
L + Q M ++ K + +A ++ DQ S R+I ++ + D
Sbjct: 190 TLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDP 249
Query: 79 INHVQKTYEEMDPTTAALEKEHEAITKVK 107
+ + K E L+ E +A+ K
Sbjct: 250 LKNRLKEIEHNLSKIMKLDNEIKALKSRK 278
>gnl|CDD|222185 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 79
Score = 27.5 bits (62), Expect = 5.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 244 VACILTLPPYQRQGYGKFLISF 265
+ + P Y+ QGYG L+
Sbjct: 29 IGGVAVDPEYRGQGYGSKLLRH 50
Score = 27.5 bits (62), Expect = 5.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 541 VACILTLPPYQRQGYGKFLISF 562
+ + P Y+ QGYG L+
Sbjct: 29 IGGVAVDPEYRGQGYGSKLLRH 50
>gnl|CDD|188360 TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype
I-C/DVULG. The CRISPR-associated protein Cas1 is
virtually universal to CRISPR systems. CRISPR, an
acronym for Clustered Regularly Interspaced Short
Palindromic Repeats, is prokaryotic immunity system for
foreign DNA, mostly from phage. CRISPR systems belong to
different subtypes, distinguished by both nature of the
repeats, the makeup of the cohort of associated Cas
proteins, and by molecular phylogeny within the more
universal Cas proteins such as this one. This model is
of type EXCEPTION and provides more specific information
than the EQUIVALOG model TIGR00287. It describes the
Cas1 protein particular to the DVULG subtype of
CRISPR/Cas system.
Length = 340
Score = 29.5 bits (67), Expect = 6.7
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 42 RFDMSEQHWKNKENQAIDLLDQSDRK--ITRNQKRRHDEINH 81
R ++ + ++ +E A+ LL RK + Q+R+ +EI H
Sbjct: 264 RGQLTAKDFEVREGGAV-LLTDDARKTVLVAYQERKQEEILH 304
>gnl|CDD|187852 cd09721, Cas1_I-C, CRISPR/Cas system-associated protein Cas1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas1 is the most universal CRISPR system protein thought
to be involved in spacer integration; Cas1 is
metal-dependent deoxyribonuclease, also binds RNA; Shown
to possess a unique fold consisting of a N-terminal
beta-strand domain and a C-terminal alpha-helical
domain.
Length = 338
Score = 29.5 bits (67), Expect = 6.7
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 42 RFDMSEQHWKNKENQAIDLLDQSDRK--ITRNQKRRHDEINH 81
R ++ + ++ +E A+ LL RK + Q+R+ +EI H
Sbjct: 263 RGQLTAKDFEVREGGAV-LLTDDARKTVLVAYQERKQEEITH 303
>gnl|CDD|217951 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V)). This is
a family of eukaryotic ER membrane proteins that are
involved in the synthesis of
glycosylphosphatidylinositol (GPI), a glycolipid that
anchors many proteins to the eukaryotic cell surface.
Proteins in this family are involved in transferring the
second mannose in the biosynthetic pathway of GPI.
Length = 412
Score = 29.0 bits (65), Expect = 9.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 278 SPEKPLSDLGKLSYRSYWS--WVLLGILRNSNFFPF 311
KPL D + + YW ++LL L +NF P
Sbjct: 376 KMWKPLGDDKIVKFLIYWLAFYILLQTLLFANFLPP 411
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.457
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,554,618
Number of extensions: 3486147
Number of successful extensions: 2830
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2801
Number of HSP's successfully gapped: 52
Length of query: 687
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 583
Effective length of database: 6,324,786
Effective search space: 3687350238
Effective search space used: 3687350238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (27.6 bits)