RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8112
(687 letters)
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics,
structural genomics consortium, SGC; HET: COA; 1.45A
{Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A*
3tob_A*
Length = 278
Score = 312 bits (801), Expect = e-102
Identities = 166/223 (74%), Positives = 195/223 (87%), Gaps = 1/223 (0%)
Query: 454 KSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFY 513
+C + PPGKEIYR NIS++EVDG HK+YCQNLCLLAKLFLDH+TLYFDV+PF+FY
Sbjct: 56 LGQCQWRQPPGKEIYRKSNISVHEVDGKDHKIYCQNLCLLAKLFLDHRTLYFDVEPFVFY 115
Query: 514 ILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLI 573
IL +D+ GAH+VGYFSKEKESPDGNNVACILTLPPYQR+GYGKFLI+FSYELSK+E +
Sbjct: 116 ILTEVDRQGAHIVGYFSKEKESPDGNNVACILTLPPYQRRGYGKFLIAFSYELSKLESTV 175
Query: 574 GSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNM 633
GSPEKPLSDLGKLSYRSYWSWVLL LR+ +G + +IK+LS+MTSI Q DIISTLQ++NM
Sbjct: 176 GSPEKPLSDLGKLSYRSYWSWVLLENLRDFRG-TLSIKDLSQMTSITQNDIISTLQSLNM 234
Query: 634 VKYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRWTPP 676
VKYWKGQHVICVTPK+VEEH++S QYK+P + VD L+W PP
Sbjct: 235 VKYWKGQHVICVTPKLVEEHLKSAQYKKPPITVDSVCLKWAPP 277
Score = 296 bits (760), Expect = 5e-96
Identities = 152/202 (75%), Positives = 178/202 (88%)
Query: 104 TKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTYC 163
TKVKY+DKI IG EID WYFSP+P++ K+PKLW+CE+CLKYM E++YR+H +C +
Sbjct: 3 TKVKYVDKIHIGNYEIDAWYFSPFPEDYGKQPKLWLCEYCLKYMKYEKSYRFHLGQCQWR 62
Query: 164 HPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDK 223
PPGKEIYR NIS++EVDG HK+YCQNLCLLAKLFLDH+TLYFDV+PF+FYIL +D+
Sbjct: 63 QPPGKEIYRKSNISVHEVDGKDHKIYCQNLCLLAKLFLDHRTLYFDVEPFVFYILTEVDR 122
Query: 224 YGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPL 283
GAH+VGYFSKEKESPDGNNVACILTLPPYQR+GYGKFLI+FSYELSK+E +GSPEKPL
Sbjct: 123 QGAHIVGYFSKEKESPDGNNVACILTLPPYQRRGYGKFLIAFSYELSKLESTVGSPEKPL 182
Query: 284 SDLGKLSYRSYWSWVLLGILRN 305
SDLGKLSYRSYWSWVLL LR+
Sbjct: 183 SDLGKLSYRSYWSWVLLENLRD 204
Score = 147 bits (371), Expect = 6e-40
Identities = 67/106 (63%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 324 FPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFH 383
FP + K+PKLW+CE+CLKYM E++YR+H +C + PPGKEIYR NIS++EVDG H
Sbjct: 26 FPEDYGKQPKLWLCEYCLKYMKYEKSYRFHLGQCQWRQPPGKEIYRKSNISVHEVDGKDH 85
Query: 384 KLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKY-DHKTLYF 428
K+YCQNLCLLAKLFLDH+TLYFDV+PF+FYIL +D+ H YF
Sbjct: 86 KIYCQNLCLLAKLFLDHRTLYFDVEPFVFYILTEVDRQGAHIVGYF 131
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 307 bits (787), Expect = e-100
Identities = 122/223 (54%), Positives = 152/223 (68%)
Query: 454 KSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFY 513
+C + HPP EIYR NIS++EVDG+ +YCQNLCLLAKLFLDHKTLY+DV+PFLFY
Sbjct: 61 MKKCGWFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFY 120
Query: 514 ILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLI 573
+L D G HLVGYFSKEK NV+CI+ LP YQR+GYG+FLI FSY LSK EG
Sbjct: 121 VLTQNDVKGCHLVGYFSKEKHCQQKYNVSCIMILPQYQRKGYGRFLIDFSYLLSKREGQA 180
Query: 574 GSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNM 633
GSPEKPLSDLG+LSY +YW V+L L + +IK+LS++T I DI STL + M
Sbjct: 181 GSPEKPLSDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRM 240
Query: 634 VKYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRWTPP 676
+ + Q VI K++++H+ Q + VDP LRWTP
Sbjct: 241 LDFRSDQFVIIRREKLIQDHMAKLQLNLRPVDVDPECLRWTPV 283
Score = 288 bits (737), Expect = 1e-92
Identities = 123/204 (60%), Positives = 146/204 (71%)
Query: 104 TKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTYC 163
+V+ I GK EI TWY SPYP E + PKL++CEFCLKYM + H +C +
Sbjct: 8 PQVRCPSVIEFGKYEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWF 67
Query: 164 HPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDK 223
HPP EIYR NIS++EVDG+ +YCQNLCLLAKLFLDHKTLY+DV+PFLFY+L D
Sbjct: 68 HPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDV 127
Query: 224 YGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPL 283
G HLVGYFSKEK NV+CI+ LP YQR+GYG+FLI FSY LSK EG GSPEKPL
Sbjct: 128 KGCHLVGYFSKEKHCQQKYNVSCIMILPQYQRKGYGRFLIDFSYLLSKREGQAGSPEKPL 187
Query: 284 SDLGKLSYRSYWSWVLLGILRNSN 307
SDLG+LSY +YW V+L L + N
Sbjct: 188 SDLGRLSYMAYWKSVILECLYHQN 211
Score = 145 bits (368), Expect = 2e-39
Identities = 61/112 (54%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 321 STRFPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDG 380
S+ +P E + PKL++CEFCLKYM + H +C + HPP EIYR NIS++EVDG
Sbjct: 28 SSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWFHPPANEIYRKNNISVFEVDG 87
Query: 381 SFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKY-DHKTLYFDVD 431
+ +YCQNLCLLAKLFLDHKTLY+DV+PFLFY+L D H YF +
Sbjct: 88 NVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGCHLVGYFSKE 139
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 301 bits (773), Expect = 6e-98
Identities = 134/267 (50%), Positives = 173/267 (64%), Gaps = 10/267 (3%)
Query: 417 VIDKYDHKTLYFDVDPFLFYILCVID------KYGAHLVGYFS-KSECTYCHPPGKEIYR 469
++ KY+ + YF P I +Y Y + +CT HPPG EIYR
Sbjct: 12 IMGKYEIEPWYFSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHPPGNEIYR 71
Query: 470 CGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLVGYF 529
+S +E+DG + +C+NLCLL+KLFLDHKTLY+DVDPFLFY + D+ G HLVGYF
Sbjct: 72 DDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMTRRDELGHHLVGYF 131
Query: 530 SKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYR 589
SKEKES DG NVACILTLP YQR GYGK LI FSYELSK E +GSPEKPLSDLG LSYR
Sbjct: 132 SKEKESADGYNVACILTLPQYQRMGYGKLLIEFSYELSKKENKVGSPEKPLSDLGLLSYR 191
Query: 590 SYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIISTLQAMNMVKYWKGQHVICVTPKI 649
+YWS L+ +L + TI E+S MTS+ TDI+ T + +N+++Y+KGQH+I + I
Sbjct: 192 AYWSDTLITLLVEHQKE-ITIDEISSMTSMTTTDILHTAKTLNILRYYKGQHIIFLNEDI 250
Query: 650 VEEHIQSTQYKRPRLQVDPTYLRWTPP 676
++ + + + R +DP L W PP
Sbjct: 251 LDRYNRL--KAKKRRTIDPNRLIWKPP 275
Score = 296 bits (758), Expect = 8e-96
Identities = 119/205 (58%), Positives = 152/205 (74%)
Query: 103 ITKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTY 162
+ +V+ +++I++GK EI+ WYFSPYP E + ++I +F L+Y ++ Y ++ +CT
Sbjct: 2 VARVRNLNRIIMGKYEIEPWYFSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTL 61
Query: 163 CHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVID 222
HPPG EIYR +S +E+DG + +C+NLCLL+KLFLDHKTLY+DVDPFLFY + D
Sbjct: 62 RHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMTRRD 121
Query: 223 KYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKP 282
+ G HLVGYFSKEKES DG NVACILTLP YQR GYGK LI FSYELSK E +GSPEKP
Sbjct: 122 ELGHHLVGYFSKEKESADGYNVACILTLPQYQRMGYGKLLIEFSYELSKKENKVGSPEKP 181
Query: 283 LSDLGKLSYRSYWSWVLLGILRNSN 307
LSDLG LSYR+YWS L+ +L
Sbjct: 182 LSDLGLLSYRAYWSDTLITLLVEHQ 206
Score = 143 bits (362), Expect = 1e-38
Identities = 48/105 (45%), Positives = 71/105 (67%)
Query: 324 FPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFH 383
+PIE + ++I +F L+Y ++ Y ++ +CT HPPG EIYR +S +E+DG
Sbjct: 26 YPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHPPGNEIYRDDYVSFFEIDGRKQ 85
Query: 384 KLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYF 428
+ +C+NLCLL+KLFLDHKTLY+DVDPFLFY + D+ H + +
Sbjct: 86 RTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMTRRDELGHHLVGY 130
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 301 bits (771), Expect = 1e-97
Identities = 131/228 (57%), Positives = 164/228 (71%), Gaps = 7/228 (3%)
Query: 454 KSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFY 513
++C HPPG EIYR G IS +E+DG +K Y QNLCLLAK FLDHKTLY+D DPFLFY
Sbjct: 54 LTKCDLRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHKTLYYDTDPFLFY 113
Query: 514 ILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLI 573
++ D G H+VGYFSKEKES + NVACILTLPPYQR+GYGK LI FSYELSKVEG
Sbjct: 114 VMTEYDCKGFHIVGYFSKEKESTEDYNVACILTLPPYQRRGYGKLLIEFSYELSKVEGKT 173
Query: 574 GSPEKPLSDLGKLSYRSYWSWVLLGILRNSKG-----NSTTIKELSEMTSIAQTDIISTL 628
G+PEKPLSDLG LSYRSYWS +L IL K TI E+SE+TSI + D+ISTL
Sbjct: 174 GTPEKPLSDLGLLSYRSYWSQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTL 233
Query: 629 QAMNMVKYWKGQHVICVTPKIVEEHIQSTQYKRPRLQVDPTYLRWTPP 676
Q +N++ Y+KGQ+++ ++ IV+ H ++ + L++D L +TP
Sbjct: 234 QYLNLINYYKGQYILTLSEDIVDGHERA--MLKRLLRIDSKCLHFTPK 279
Score = 293 bits (751), Expect = 1e-94
Identities = 126/204 (61%), Positives = 149/204 (73%)
Query: 104 TKVKYIDKIMIGKCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTMERTYRYHKSECTYC 163
T++K I+ I +G+ + WYFSPYP E P L++CEFCLKY + + H ++C
Sbjct: 1 TRMKNIECIELGRHRLKPWYFSPYPQELTTLPVLYLCEFCLKYGRSLKCLQRHLTKCDLR 60
Query: 164 HPPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDK 223
HPPG EIYR G IS +E+DG +K Y QNLCLLAK FLDHKTLY+D DPFLFY++ D
Sbjct: 61 HPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHKTLYYDTDPFLFYVMTEYDC 120
Query: 224 YGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPL 283
G H+VGYFSKEKES + NVACILTLPPYQR+GYGK LI FSYELSKVEG G+PEKPL
Sbjct: 121 KGFHIVGYFSKEKESTEDYNVACILTLPPYQRRGYGKLLIEFSYELSKVEGKTGTPEKPL 180
Query: 284 SDLGKLSYRSYWSWVLLGILRNSN 307
SDLG LSYRSYWS +L IL
Sbjct: 181 SDLGLLSYRSYWSQTILEILMGLK 204
Score = 146 bits (370), Expect = 1e-39
Identities = 53/105 (50%), Positives = 68/105 (64%)
Query: 324 FPIECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFH 383
+P E P L++CEFCLKY + + H ++C HPPG EIYR G IS +E+DG +
Sbjct: 24 YPQELTTLPVLYLCEFCLKYGRSLKCLQRHLTKCDLRHPPGNEIYRKGTISFFEIDGRKN 83
Query: 384 KLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYDHKTLYF 428
K Y QNLCLLAK FLDHKTLY+D DPFLFY++ D + +
Sbjct: 84 KSYSQNLCLLAKCFLDHKTLYYDTDPFLFYVMTEYDCKGFHIVGY 128
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct
genomics, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.34.13.3
Length = 133
Score = 134 bits (337), Expect = 5e-37
Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAIDL 60
AE+IQ+R N+ E E+YVHY GFNRRLDEWV K+R+ ++ + + KN E +L
Sbjct: 30 SAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALTK-TVKDAVQKNSEKYLSEL 88
Query: 61 LDQSDRKITRNQKRRHDEINHVQKTYEEMDPTTAALEKEHE 101
+Q +RKITRNQKR+HDEINHVQKTY EMDPTTAALEKE
Sbjct: 89 AEQPERKITRNQKRKHDEINHVQKTYAEMDPTTAALEKESG 129
>2bud_A Males-absent on the first protein; transferase, MOF, HAT,
acetyl-transfer, dosage compensation complex, DCC,
royal family; NMR {Drosophila melanogaster} SCOP:
b.34.13.3
Length = 92
Score = 67.1 bits (163), Expect = 5e-14
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 1 PAEIIQNRYNELEN-CFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSE 47
+++Q+R E EYYVHY G NRRLD WV +HRI ++ D+
Sbjct: 32 RGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNADDLGG 79
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain,
RNA binding, activator, chromatin regulator,
transcription; NMR {Saccharomyces cerevisiae}
Length = 94
Score = 63.5 bits (154), Expect = 1e-12
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAID 59
AEI+ + ++YVHY +N+RLDEW+ RI + E + + D
Sbjct: 42 LAEILSIN--TRKAPPKFYVHYVNYNKRLDEWITTDRINLDK----EVLYPKLKATDED 94
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail,
chromatin organization modifier, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 87
Score = 63.1 bits (153), Expect = 1e-12
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKE 54
AEI+ + ++ +YVHY FNRRLDEWV R+ D+ + + KE
Sbjct: 31 LAEILSVK--DISGRKLFYVHYIDFNRRLDEWVTHERL-----DLKKIQFPKKE 77
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain,
RNA binding, activator, chromatin regulator,
transcription; NMR {Saccharomyces cerevisiae}
Length = 92
Score = 61.9 bits (150), Expect = 3e-12
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAID 59
AEI+ + ++YVHY +N+RLDEW+ RI + E + + D
Sbjct: 40 LAEILSIN--TRKAPPKFYVHYVNYNKRLDEWITTDRINLDK----EVLYPKLKATDED 92
>1bob_A HAT1, histone acetyltransferase; histone modification, acetyl
coenzyme A binding-protein; HET: ACO; 2.30A
{Saccharomyces cerevisiae} SCOP: d.108.1.1
Length = 320
Score = 60.4 bits (146), Expect = 5e-10
Identities = 31/193 (16%), Positives = 60/193 (31%), Gaps = 32/193 (16%)
Query: 165 PPGKEIY----RCGNISIYEVDGSFH--KLYCQNLCLLAKLFLDHKTLYFDVDP-FLFYI 217
+++ +Y+ + + + + + LF++ + DP + Y
Sbjct: 119 DVFEKVSEYSLNGEEFVVYKSSLVDDFARRMHRRVQIFSLLFIEAANYIDETDPSWQIYW 178
Query: 218 LCVIDKYGAHLVGY--------------FSKEKESPDGNNVACILTLPPYQRQGYGKFLI 263
L L+G+ F ++ + ++ L PPYQ +G+G L
Sbjct: 179 LLNKKTK--ELIGFVTTYKYWHYLGAKSFDEDIDKKFRAKISQFLIFPPYQNKGHGSCLY 236
Query: 264 SFSYELSKVEGLIG--SPEKPLSDLGKLSYRSYWSWVLLGILRNSNFFPFKPVVRTSSRS 321
+ + I + E P L R + LR + S S
Sbjct: 237 EAIIQSWLEDKSITEITVEDPNEAFDDL--RDR---NDIQRLR--KLGYDAVFQKHSDLS 289
Query: 322 TRFPIECKKKPKL 334
F +K KL
Sbjct: 290 DEFLESSRKSLKL 302
Score = 57.7 bits (139), Expect = 4e-09
Identities = 32/215 (14%), Positives = 67/215 (31%), Gaps = 35/215 (16%)
Query: 402 TLYFDVDPFLFYILCVIDKYDHKTLYFDVD-------PFLFYILCVIDKYGAHLVGYFSK 454
L FD F Y+ KY K ++ FL ++ + + +
Sbjct: 55 HLAFDSVTFKPYVNV---KYSAKLGDDNIVDVEKKLLSFLPKDDVIVRDEAKWVDCFAEE 111
Query: 455 SECTYCHPPGKEIY----RCGNISIYEVDGSFH--KLYCQNLCLLAKLFLDHKTLYFDVD 508
+ +++ +Y+ + + + + + LF++ + D
Sbjct: 112 RKTHNLSDVFEKVSEYSLNGEEFVVYKSSLVDDFARRMHRRVQIFSLLFIEAANYIDETD 171
Query: 509 P-FLFYILCVIDKYGAHLVGY--------------FSKEKESPDGNNVACILTLPPYQRQ 553
P + Y L L+G+ F ++ + ++ L PPYQ +
Sbjct: 172 PSWQIYWLLNKKTK--ELIGFVTTYKYWHYLGAKSFDEDIDKKFRAKISQFLIFPPYQNK 229
Query: 554 GYGKFLISFSYELSKVEGLIG--SPEKPLSDLGKL 586
G+G L + + I + E P L
Sbjct: 230 GHGSCLYEAIIQSWLEDKSITEITVEDPNEAFDDL 264
Score = 29.2 bits (65), Expect = 4.1
Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 362 PPGKEIY----RCGNISIYEVDGSFH--KLYCQNLCLLAKLFLDHKTLYFDVDP-FLFYI 414
+++ +Y+ + + + + + LF++ + DP + Y
Sbjct: 119 DVFEKVSEYSLNGEEFVVYKSSLVDDFARRMHRRVQIFSLLFIEAANYIDETDPSWQIYW 178
Query: 415 LCVIDKYD 422
L +
Sbjct: 179 LLNKKTKE 186
>2p0w_A Histone acetyltransferase type B catalytic subuni; HAT1, structural
genomics, structural genomics consortium, S transferase;
HET: ACO; 1.90A {Homo sapiens}
Length = 324
Score = 49.2 bits (117), Expect = 2e-06
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 178 IYEVDGSFH--KLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGA------HLV 229
IY+ D + + Y + L F++ + + DVD ++ V +KY V
Sbjct: 144 IYKADMTCRGFREYHERLQTFLMWFIETAS-FIDVDDERWHYFLVFEKYNKDGATLFATV 202
Query: 230 GYFSKEK--ESPDGNN--VACILTLPPYQRQGYGKFLISFSYELSK 271
GY + PD V+ +L L P+Q QG+G L+ +
Sbjct: 203 GYMTVYNYYVYPDKTRPRVSQMLILTPFQGQGHGAQLLETVHRYYT 248
Score = 49.2 bits (117), Expect = 2e-06
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 475 IYEVDGSFH--KLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYGA------HLV 526
IY+ D + + Y + L F++ + + DVD ++ V +KY V
Sbjct: 144 IYKADMTCRGFREYHERLQTFLMWFIETAS-FIDVDDERWHYFLVFEKYNKDGATLFATV 202
Query: 527 GYFSKEK--ESPDGNN--VACILTLPPYQRQGYGKFLISFSYELSK 568
GY + PD V+ +L L P+Q QG+G L+ +
Sbjct: 203 GYMTVYNYYVYPDKTRPRVSQMLILTPFQGQGHGAQLLETVHRYYT 248
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel
domain, RBBP1, transcription; NMR {Homo sapiens}
Length = 76
Score = 44.2 bits (104), Expect = 5e-06
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIM 39
A I ++ E Y VHY G+N R DEWV+ RI+
Sbjct: 26 EASIKSTEIDDGE--VLYLVHYYGWNVRYDEWVKADRII 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 8e-06
Identities = 92/660 (13%), Positives = 202/660 (30%), Gaps = 169/660 (25%)
Query: 36 HRIMNSRFDMSEQHWKNK------ENQAIDLLDQSD-RKITRN--QKRRHDEI----NHV 82
H M+ F+ E ++ K E+ +D D D + + ++ K D I + V
Sbjct: 4 HHHMD--FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 83 QKTYEEMDPTTAALEKEHEAITKVKYIDKIMIGKCEID-TWYFSPYPDECKKKP---KLW 138
T L + E + + K++++++ I+ + SP E ++ +++
Sbjct: 62 SGTLRLFW----TLLSKQEEMVQ-KFVEEVL----RINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 139 ICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRC-------GNISIYEVDGSFHKLYCQ 191
I + Y + +Y+ S P ++ + N+ I V G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLG------SG 162
Query: 192 NLCLLAKLFLDHKTLYFDVDPF-LFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTL 250
+ + L +K F +F++ + + + +
Sbjct: 163 KTWVALDVCLSYKVQ--CKMDFKIFWL----------NLKNCNSPETVLEMLQKLLYQID 210
Query: 251 PPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSNFFP 310
P + + I + E L L L + Y + LL +L N
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAE---------LRRL--LKSKPYEN-CLL-VLLN----- 252
Query: 311 FKPVVRTSSRSTRFPIECK-------KKPKLWICEFCLKYMTMERTYRYHKSECTYCHPP 363
V+ + F + CK K+ ++ +++++ T
Sbjct: 253 ----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD------HHSMTLTPDE 302
Query: 364 GKEIY-RCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKT-----LYFDVDPFLFYI--- 414
K + + + ++ + L ++A+ D + + D I
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 415 LCVIDKYDHKTLYFDVDPFLF----YI----LCVI----DKYGA-HLVGYFSKSECTYCH 461
L V++ +++ ++ + +F +I L +I K +V K
Sbjct: 363 LNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 462 PPGKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTL---Y-----FDVDPFLFY 513
P I +Y + L + H+++ Y FD D +
Sbjct: 421 PKESTIS-------------IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-- 465
Query: 514 ILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE--- 570
+D+Y +G+ K E P+ + + + F + K+
Sbjct: 466 -PPYLDQYFYSHIGHHLKNIEHPE-------------RMTLFRMVFLDFRFLEQKIRHDS 511
Query: 571 ---GLIGSPEKPLSDLGKLSYRSYWSWVLLGILRNSKGNSTTIKELSEMTSIAQTDIIST 627
GS L L Y+ Y I N + + + + ++I +
Sbjct: 512 TAWNASGSILNTLQQLKF--YKPY-------ICDNDPKYERLVNAILDFLPKIEENLICS 562
Score = 44.8 bits (105), Expect = 1e-04
Identities = 80/584 (13%), Positives = 162/584 (27%), Gaps = 179/584 (30%)
Query: 26 NRRLDEWV-QKHRIMNSR--FDMSEQHWKNKENQAIDLLDQSD------------RKITR 70
+D + K + + F + + ++ + + + R+ +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 71 NQKRRHDEINHVQKTYEEMDPTTAALEKEHEAITKVKYIDKI--------M--IGKCEID 120
+ ++ + + + + + + + + + + GK
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---- 163
Query: 121 TW----YFSPYPDECKKKPKL-WI----C---EFCLKYMTMERTYRYHKSECTYCHPPGK 168
TW Y +CK K+ W+ C E L+ M + Y+ + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSN 222
Query: 169 EIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDH----KTL-YFDVDPFLFYILC---- 219
R +I K Y CLL L + K F++ C
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYEN--CLL---VLLNVQNAKAWNAFNLS-------CKILL 270
Query: 220 ------VIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVE 273
V D A + S + S LT P + K+L +L + E
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMT-------LT-PDEVKSLLLKYLDCRPQDLPR-E 321
Query: 274 GLIGSPEKPLSDLGKL--SYRSYWS-WVLLGILRNSNFFPFKPVVRTS-----SRSTR-- 323
L +P + LS + + + W W ++ N ++ +S R
Sbjct: 322 VLTTNPRR-LSIIAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 324 ------FP----IECKKKPKLW----------ICEFCLKYMTMERTYRYHKSECTYCHPP 363
FP I +W + KY +E+ E T
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTI---- 426
Query: 364 GKEIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYILCVIDKYDH 423
S +Y + L + H+++ +D Y+
Sbjct: 427 -----------------SIPSIYLELKVKLENEYALHRSI--------------VDHYNI 455
Query: 424 KTLYFDVDPFLFYILCVIDKYGAHLVGYFSKSECTYCHPPGKEIYRCGNISIYEVDGSFH 483
+ D Y +D+Y +G+ H NI E F
Sbjct: 456 PKTFDSDDLIPPY----LDQYFYSHIGH---------H--------LKNIEHPERMTLFR 494
Query: 484 KLYCQNLCLL-AKLFLDHKTLYFDVDPFLFYILCVIDKYGAHLV 526
++ + L K + H + ++ + L + Y ++
Sbjct: 495 MVF-LDFRFLEQK--IRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Score = 41.4 bits (96), Expect = 0.001
Identities = 49/375 (13%), Positives = 99/375 (26%), Gaps = 101/375 (26%)
Query: 3 EIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQH----------WKN 52
E++Q +++ + + + +Q R S+ +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQNA 256
Query: 53 KENQAID-----LLDQSDRKITR---NQKRRHDEINHVQKTYEEMDPTTAALEKEHEAIT 104
K A + LL +++T H ++H T D + L K
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK----YL 311
Query: 105 KVKYID------KI------MIG---KCEIDTWYFSPYPDECKKKPKLWICEFCLKYMTM 149
+ D +I + + TW + + K + L+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 150 ERTYRY--------HKSECTYC--------HPPGKEIYRCGNISIYEVDG-----SFHKL 188
+ + H + + S+ E S +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 189 YCQNLCLLAKLFLDHKTL---Y-----FDVDPFLFYILCVIDKYGAHLVGYFSKEKESPD 240
Y + L + H+++ Y FD D + +D+Y +G+ K E P+
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI---PPYLDQYFYSHIGHHLKNIEHPE 488
Query: 241 GNNVACILTLPPYQRQGYGKFLISFSYELSKVE------GLIGSPEKPLSDLGKLSYRSY 294
+ + + F + K+ GS L L Y+ Y
Sbjct: 489 -------------RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YKPY 533
Query: 295 WSWVLLGILRNSNFF 309
I N +
Sbjct: 534 -------ICDNDPKY 541
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 39.0 bits (90), Expect = 5e-04
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAIDL 60
A+ ++ + + +Y++HY G+N+ DEWV + R++ N
Sbjct: 39 EAKCVKVAIKDKQ--VKYFIHYSGWNKNWDEWVPESRVL----------KYVDTNLQKQR 86
Query: 61 -LDQSDRKITRNQKRR 75
L +++++ K R
Sbjct: 87 ELQKANQEQYAEGKMR 102
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling,
chromo domain, transcription factor, transcription
regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A
3e9f_A*
Length = 130
Score = 39.3 bits (90), Expect = 7e-04
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 10 NELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAI--DLLDQSDRK 67
E+ N +++HY G+ DEWV RI N+EN A+ L +++
Sbjct: 69 EEIINGKCFFIHYQGWKSSWDEWVGYDRIR----------AYNEENIAMKKRLANEAKEA 118
Query: 68 ITRNQKRRHDE 78
+ H
Sbjct: 119 KKSLLEHHHHH 129
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 38.2 bits (87), Expect = 0.002
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 11 ELENCFEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAIDLLDQSDRKITR 70
E+ N +++HY G+ DEWV RI + + K N+A
Sbjct: 72 EIINGKSFFIHYQGWKSSWDEWVGYDRIRAYN-EENIAMKKRLANEAGSTGSAPATGGVX 130
Query: 71 NQKRR 75
R
Sbjct: 131 KPHRY 135
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4
tail, DNA backbone recognitio methyllysine recognition,
H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB:
3oa6_A* 3ob9_A*
Length = 110
Score = 36.0 bits (82), Expect = 0.006
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 16 FEYYVHYDGFNRRLDEWVQKHRIMNSRFDMSEQHWKNKENQAI--DLLDQSDRKITRNQK 73
EY +H++G+NR D W + ++ EN+ + L ++ ++ +
Sbjct: 59 PEYLIHFNGWNRSWDRWAAEDHVL----------RDTDENRRLQRKLARKAVARLRSTGR 108
Query: 74 RR 75
++
Sbjct: 109 KK 110
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics,
LID complex, transcription; NMR {Drosophila
melanogaster}
Length = 85
Score = 35.0 bits (80), Expect = 0.008
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 13 ENCFEYYVHYDGFNRRLDEWVQKHRIM 39
EYY+HY G+++ DEWV ++R++
Sbjct: 39 ATPVEYYIHYAGWSKNWDEWVPENRVL 65
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2jtf_A
Length = 88
Score = 35.0 bits (80), Expect = 0.010
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQ 34
P+ I + Y E + VH++ ++ R DEW+
Sbjct: 37 PSRIEKIDYEEGK----MLVHFERWSHRYDEWIY 66
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine
recognition, aromatic CAGE, complex, transcription
upregulation; 1.29A {Drosophila melanogaster}
Length = 101
Score = 34.6 bits (79), Expect = 0.015
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 3 EIIQNRYNELENCFEYYVHYDGFNRRLDEWVQKHRIM 39
+ + R +EY +H+ G+ D V+ ++
Sbjct: 46 NVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLL 82
>1on0_A YYCN protein; structural genomics, alpha-beta protein with
anti-parallel B strands, PSI, protein structure
initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Length = 158
Score = 35.9 bits (83), Expect = 0.015
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 218 LCVIDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 274
L + +VG+ E A I PY+ +GY K ++ + ++ G
Sbjct: 62 LWSLKLNEKDIVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAALDQAARSMG 121
Query: 275 L 275
+
Sbjct: 122 I 122
Score = 35.9 bits (83), Expect = 0.015
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 515 LCVIDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 571
L + +VG+ E A I PY+ +GY K ++ + ++ G
Sbjct: 62 LWSLKLNEKDIVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAALDQAARSMG 121
Query: 572 L 572
+
Sbjct: 122 I 122
>2ob0_A Human MAK3 homolog; acetyltransferase, structural genomics
consortium, SGC; HET: ACO; 1.80A {Homo sapiens} PDB:
2psw_A* 3tfy_A*
Length = 170
Score = 35.0 bits (81), Expect = 0.032
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 218 LCVIDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 274
L + + VG + I+TL PY+R G G +++ + + +G
Sbjct: 46 LAKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDG 105
Query: 275 LI 276
Sbjct: 106 TF 107
Score = 35.0 bits (81), Expect = 0.032
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 515 LCVIDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 571
L + + VG + I+TL PY+R G G +++ + + +G
Sbjct: 46 LAKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDG 105
Query: 572 LI 573
Sbjct: 106 TF 107
>1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural
genomics, PSI, protein structure initiative; 2.20A
{Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 180
Score = 34.1 bits (78), Expect = 0.070
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 218 LCVIDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 274
L + +VG+ E A I PY+ +GY K ++ + ++ G
Sbjct: 86 LWSLKLNEKDIVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAALDQAARSMG 145
Query: 275 L 275
+
Sbjct: 146 I 146
Score = 34.1 bits (78), Expect = 0.070
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 515 LCVIDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 571
L + +VG+ E A I PY+ +GY K ++ + ++ G
Sbjct: 86 LWSLKLNEKDIVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAALDQAARSMG 145
Query: 572 L 572
+
Sbjct: 146 I 146
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo
sapiens} PDB: 3q1j_A
Length = 69
Score = 31.7 bits (72), Expect = 0.095
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 1 PAEIIQNRYNELENCFEYYVHYDGFNRRLDEWVQ 34
PA I Y E + +H+ +N R DEW
Sbjct: 30 PAHIEDIDYEE----GKVLIHFKRWNHRYDEWFC 59
>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural
genomics, PSI, protein structure initiative; HET: COA;
3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 163
Score = 31.6 bits (72), Expect = 0.37
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 223 KYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274
G L G + K P + I Q++G+GK L+ + E +K G
Sbjct: 45 WAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLG 96
Score = 31.6 bits (72), Expect = 0.37
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 520 KYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571
G L G + K P + I Q++G+GK L+ + E +K G
Sbjct: 45 WAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLG 96
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac
biosynthesis, alpha/beta protein; HET: EPE; 1.50A
{Arabidopsis thaliana}
Length = 149
Score = 31.7 bits (72), Expect = 0.39
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 207 YFDVDPFLFYILCVIDKYGAHLVGYFS---KEKESPDGNNVACI---LTLPPYQRQGYGK 260
I + ++ + S ++K + I + ++ + GK
Sbjct: 43 EIRSYGDDHVICVIEEETSGKIAATGSVMIEKKFLRNCGKAGHIEDVVVDSRFRGKQLGK 102
Query: 261 FLISFSYELSKVEG 274
++ F + K G
Sbjct: 103 KVVEFLMDHCKSMG 116
Score = 31.7 bits (72), Expect = 0.39
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 504 YFDVDPFLFYILCVIDKYGAHLVGYFS---KEKESPDGNNVACI---LTLPPYQRQGYGK 557
I + ++ + S ++K + I + ++ + GK
Sbjct: 43 EIRSYGDDHVICVIEEETSGKIAATGSVMIEKKFLRNCGKAGHIEDVVVDSRFRGKQLGK 102
Query: 558 FLISFSYELSKVEG 571
++ F + K G
Sbjct: 103 KVVEFLMDHCKSMG 116
>1i12_A Glucosamine-phosphate N-acetyltransferase; GNAT, alpha/beta; HET:
ACO; 1.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1
PDB: 1i1d_A* 1i21_A
Length = 160
Score = 31.3 bits (71), Expect = 0.59
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 206 LYFDVDPFLFYILCVIDKYGAHLVGYFS---KEKESPDGNNVACI---LTLPPYQRQGYG 259
D + + ++DK + + + K + I YQ QG G
Sbjct: 54 DNEDKKIMQYNPMVIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLG 113
Query: 260 KFLISFSYELSKVEG 274
K LI + G
Sbjct: 114 KLLIDQLVTIGFDYG 128
Score = 31.3 bits (71), Expect = 0.59
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 503 LYFDVDPFLFYILCVIDKYGAHLVGYFS---KEKESPDGNNVACI---LTLPPYQRQGYG 556
D + + ++DK + + + K + I YQ QG G
Sbjct: 54 DNEDKKIMQYNPMVIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLG 113
Query: 557 KFLISFSYELSKVEG 571
K LI + G
Sbjct: 114 KLLIDQLVTIGFDYG 128
>3fnc_A Protein LIN0611, putative acetyltransferase; GNAT, RIMI, structural
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.75A {Listeria innocua}
Length = 163
Score = 31.1 bits (71), Expect = 0.70
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 225 GAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSK 271
++G+ + + + +A LP ++G G L+ L
Sbjct: 68 ADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEVGMTLFH 114
Score = 31.1 bits (71), Expect = 0.70
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 522 GAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSK 568
++G+ + + + +A LP ++G G L+ L
Sbjct: 68 ADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEVGMTLFH 114
>2kcw_A Uncharacterized acetyltransferase YJAB; GNAT fold, acyltransferase;
NMR {Escherichia coli}
Length = 147
Score = 30.9 bits (70), Expect = 0.72
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 240 DGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 275
G ++ + P + G G+ L+ + ++
Sbjct: 69 SGQHMDALFIDPDVRGCGVGRVLVEHALSMAPELTT 104
Score = 30.9 bits (70), Expect = 0.72
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 537 DGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGL 572
G ++ + P + G G+ L+ + ++
Sbjct: 69 SGQHMDALFIDPDVRGCGVGRVLVEHALSMAPELTT 104
>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG,
P structural genomics, protein structure initiative;
HET: ACO; 1.80A {Thermus thermophilus}
Length = 160
Score = 30.9 bits (70), Expect = 0.85
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 208 FDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNN--VACILTLPPYQRQGYGKFLI 263
+VDP L + VGY + P+ + ++ +L +Q +G G+ +
Sbjct: 56 LEVDPRRRAFLLFLG---QEPVGYLDAKLGYPEAEDATLSLLLIREDHQGRGLGRQAL 110
Score = 30.9 bits (70), Expect = 0.85
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 505 FDVDPFLFYILCVIDKYGAHLVGYFSKEKESPDGNN--VACILTLPPYQRQGYGKFLI 560
+VDP L + VGY + P+ + ++ +L +Q +G G+ +
Sbjct: 56 LEVDPRRRAFLLFLG---QEPVGYLDAKLGYPEAEDATLSLLLIREDHQGRGLGRQAL 110
>1y9k_A IAA acetyltransferase; structural genomics, midwest center for
structural genomics bacillus cereus ATCC 14579, PSI;
2.39A {Bacillus cereus atcc 14579} SCOP: d.108.1.1
Length = 157
Score = 30.4 bits (69), Expect = 0.93
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 223 KYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274
K G ++G + + P + I Q +G GK L+ + E +K G
Sbjct: 43 KQGGSVIGVYVLLETRPKTMEIMNIAVAEHLQGKGIGKKLLRHAVETAKGYG 94
Score = 30.4 bits (69), Expect = 0.93
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 520 KYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571
K G ++G + + P + I Q +G GK L+ + E +K G
Sbjct: 43 KQGGSVIGVYVLLETRPKTMEIMNIAVAEHLQGKGIGKKLLRHAVETAKGYG 94
>4ag7_A Glucosamine-6-phosphate N-acetyltransferase; HET: COA; 1.55A
{Caenorhabditis elegans} PDB: 4ag9_A*
Length = 165
Score = 30.6 bits (69), Expect = 1.0
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 207 YFDVDPFLFYILCVIDKYGAHLVGYFS---KEKESPDGNNVACIL---TLPPYQRQGYGK 260
++I+ + D +V S + K + + +RQ G
Sbjct: 60 AMRTSVPNYHIVVIEDSNSQKVVASASLVVEMKFIHGAGSRGRVEDVVVDTEMRRQKLGA 119
Query: 261 FLISFSYELSKVEG 274
L+ L K G
Sbjct: 120 VLLKTLVSLGKSLG 133
Score = 30.6 bits (69), Expect = 1.0
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 504 YFDVDPFLFYILCVIDKYGAHLVGYFS---KEKESPDGNNVACIL---TLPPYQRQGYGK 557
++I+ + D +V S + K + + +RQ G
Sbjct: 60 AMRTSVPNYHIVVIEDSNSQKVVASASLVVEMKFIHGAGSRGRVEDVVVDTEMRRQKLGA 119
Query: 558 FLISFSYELSKVEG 571
L+ L K G
Sbjct: 120 VLLKTLVSLGKSLG 133
>1p0h_A Hypothetical protein RV0819; GNAT fold, acetyltransferase, coenzyme
A complex, MSHD, TRAN; HET: COA ACO; 1.60A
{Mycobacterium tuberculosis} SCOP: d.108.1.1 PDB:
1ozp_A* 2c27_A*
Length = 318
Score = 31.3 bits (70), Expect = 1.0
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 211 DPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLIS 264
++L + G ++GY + G +A ++ P +R+G G +
Sbjct: 47 QQRTEHLLVAGSRPGGPIIGYLNLSPPRGAGGAMAELVVHPQSRRRGIGTAMAR 100
Score = 31.3 bits (70), Expect = 1.0
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 508 DPFLFYILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLIS 561
++L + G ++GY + G +A ++ P +R+G G +
Sbjct: 47 QQRTEHLLVAGSRPGGPIIGYLNLSPPRGAGGAMAELVVHPQSRRRGIGTAMAR 100
>1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic
resistance, coenzyme A; HET: COA; 1.80A {Enterococcus
faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A*
Length = 180
Score = 30.5 bits (68), Expect = 1.1
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 218 LCVIDKYGAHLVGYFS-KEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLI 276
+ V LVG+ + G + ++ ++ G L+++ + G I
Sbjct: 46 IAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGI 105
Query: 277 G 277
Sbjct: 106 T 106
Score = 30.5 bits (68), Expect = 1.1
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 515 LCVIDKYGAHLVGYFS-KEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLI 573
+ V LVG+ + G + ++ ++ G L+++ + G I
Sbjct: 46 IAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGI 105
Query: 574 G 574
Sbjct: 106 T 106
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 31.0 bits (71), Expect = 1.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 244 VACILTLPPYQRQGYGKFLISFSYELSKVEGL 275
+AC+ P Q GYG+ L++ + ++ G+
Sbjct: 374 IACLAVSPQAQDGGYGERLLAHIIDKARGIGI 405
Score = 31.0 bits (71), Expect = 1.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 541 VACILTLPPYQRQGYGKFLISFSYELSKVEGL 572
+AC+ P Q GYG+ L++ + ++ G+
Sbjct: 374 IACLAVSPQAQDGGYGERLLAHIIDKARGIGI 405
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus
epidermidis ATCC structural genomics, PSI-2, protein
structure initiative; HET: MES; 2.32A {Staphylococcus
epidermidis}
Length = 254
Score = 30.7 bits (69), Expect = 1.4
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 217 ILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLI 276
I ++ VG + + L +Q QG G + ++ ++ +I
Sbjct: 164 IERLVAYVNHQPVGIVDI-IMTDKTIEIDGFGVLEEFQHQGIGSEIQAYVGRMANERPVI 222
Score = 30.7 bits (69), Expect = 1.4
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 514 ILCVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLI 573
I ++ VG + + L +Q QG G + ++ ++ +I
Sbjct: 164 IERLVAYVNHQPVGIVDI-IMTDKTIEIDGFGVLEEFQHQGIGSEIQAYVGRMANERPVI 222
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics,
structural genomics consortium, SGC; HET: 16G COA; 1.80A
{Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Length = 184
Score = 30.3 bits (68), Expect = 1.5
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 215 FYILCVIDKYGAHLVGYFSKEKESPDGNNVAC------ILTLPPYQRQGYGKFLISFSYE 268
+Y+ V D +V + E ++ A ++ + + GK L+S
Sbjct: 84 YYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLSTLTL 143
Query: 269 LSKVEG 274
LSK
Sbjct: 144 LSKKLN 149
Score = 30.3 bits (68), Expect = 1.5
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 512 FYILCVIDKYGAHLVGYFSKEKESPDGNNVAC------ILTLPPYQRQGYGKFLISFSYE 565
+Y+ V D +V + E ++ A ++ + + GK L+S
Sbjct: 84 YYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLSTLTL 143
Query: 566 LSKVEG 571
LSK
Sbjct: 144 LSKKLN 149
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.9
Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 50 WKNKENQAIDLLD-QSDRKITRNQKRRHDEINHVQKTYEEMDPTTAALEKEHEA 102
W+ ++ + + LD S +++ ++ + E +EK
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ------VEKNKIN 137
Score = 29.4 bits (65), Expect = 2.8
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 18/67 (26%)
Query: 57 AIDLLDQSDRKITRNQKRRHDEINHVQKTYEEMDPTTAALEKEHEAITKVKYIDKIMIGK 116
D L Q I + ++ + + +E+D A K E + K K
Sbjct: 76 QADRLTQEPESIRKWREEQRKRL-------QELD----AASKVMEQEWREK-------AK 117
Query: 117 CEIDTWY 123
+++ W
Sbjct: 118 KDLEEWN 124
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI
1; alpha-beta protein, structural genomics, PSI; HET:
COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Length = 180
Score = 29.7 bits (67), Expect = 2.1
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 223 KYGAHLVGYFS-------KEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274
+ + GY E+ + + I +Q+ G GK L++ + E++
Sbjct: 65 YFDHEIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERN 123
Score = 29.7 bits (67), Expect = 2.1
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 520 KYGAHLVGYFS-------KEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571
+ + GY E+ + + I +Q+ G GK L++ + E++
Sbjct: 65 YFDHEIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERN 123
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 2.2
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 22/82 (26%)
Query: 20 VHYD-------GFNRRLDEWVQKHRIMNSRFDMSEQHWKNK----------ENQAIDL-- 60
V+Y + + RI+ S ++S+ K K EN AI+L
Sbjct: 122 VNYSSEVKENSVDSDDKAKVPPLIRIV-SGLELSDTKQKGKKFLVIAYEPFENIAIELPP 180
Query: 61 --LDQSDRKITRNQKRRHDEIN 80
+ S+ N DE+N
Sbjct: 181 NEILFSENNDMDNNNDGVDELN 202
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 30.2 bits (69), Expect = 2.7
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 9/57 (15%)
Query: 75 RHDEINHVQKTYEEMDPTTAALEKEHEAITKVKYIDKIMIGKCEIDTWYFSPYPDEC 131
R D H++ T E+ + + I + + + +
Sbjct: 184 RFDAAKHMRDTIEQNVRFW------KYFL---SDLKGIFLAEIWAEARMVDEHGRIF 231
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 30.1 bits (68), Expect = 2.9
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 79 INHVQKTYEE-------MDPTT--AALEKEHEAITKVKYIDKIMIGKCEIDTWY 123
I +++ + + MD T A EK ++ Y D I+ +++ Y
Sbjct: 390 IAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEY 443
>3s6f_A Hypothetical acetyltransferase; acyl-COA N-acyltransferases,
structural genomics, joint CENT structural genomics,
JCSG; HET: MSE COA; 1.19A {Deinococcus radiodurans}
Length = 145
Score = 29.1 bits (65), Expect = 3.0
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 239 PDGNNVACILTL---PPYQRQGYGKFLI 263
DG A I L ++ G G L+
Sbjct: 68 SDGILAASIPLLEVQAGWRSLGLGSELM 95
Score = 29.1 bits (65), Expect = 3.0
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 536 PDGNNVACILTL---PPYQRQGYGKFLI 560
DG A I L ++ G G L+
Sbjct: 68 SDGILAASIPLLEVQAGWRSLGLGSELM 95
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 29.7 bits (67), Expect = 3.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 135 PKLWICEFCLKYM--TMERTYRYHKSECTYCHP 165
P + +CE CL+ + +R YRY CT C P
Sbjct: 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGP 141
Score = 29.7 bits (67), Expect = 3.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 332 PKLWICEFCLKYM--TMERTYRYHKSECTYCHP 362
P + +CE CL+ + +R YRY CT C P
Sbjct: 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGP 141
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, structural genomics, NPPSFA; NMR {Mus musculus}
SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Length = 143
Score = 28.5 bits (63), Expect = 3.7
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 16/76 (21%)
Query: 326 IECKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKL 385
+C + C C + +R Y H C C KE + FH L
Sbjct: 75 EDCSTLFGEYYCSICHLFDKDKRQY--HCESCGICRIGPKEDF-------------FHCL 119
Query: 386 YCQNLCLLAKLFLDHK 401
C NLCL L HK
Sbjct: 120 KC-NLCLTTNLRGKHK 134
Score = 28.1 bits (62), Expect = 6.1
Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 131 CKKKPKLWICEFCLKYMTMERTYRYHKSECTYCHPPGKEIYRCGNISIYEVDGSFHKLYC 190
C + C C + +R Y H C C KE + FH L C
Sbjct: 77 CSTLFGEYYCSICHLFDKDKRQY--HCESCGICRIGPKEDF-------------FHCLKC 121
Query: 191 QNLCLLAKLFLDHK 204
NLCL L HK
Sbjct: 122 -NLCLTTNLRGKHK 134
>3e0k_A Amino-acid acetyltransferase; N-acetylglutamate synthase, structu
genomics, PSI-2, protein structure initiative; HET: MSE;
2.52A {Vibrio parahaemolyticus}
Length = 150
Score = 28.6 bits (64), Expect = 3.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 243 NVACILTLPPYQRQGYGKFLISFSYELSKVEGL 275
+AC+ P Y+ G L+++ SK E +
Sbjct: 70 EMACVAIHPDYRDGNRGLLLLNYMKHRSKSENI 102
Score = 28.6 bits (64), Expect = 3.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 540 NVACILTLPPYQRQGYGKFLISFSYELSKVEGL 572
+AC+ P Y+ G L+++ SK E +
Sbjct: 70 EMACVAIHPDYRDGNRGLLLLNYMKHRSKSENI 102
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 29.6 bits (66), Expect = 4.4
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 247 ILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRN 305
I P QR+G G+ LI+ + + ++ + +L + R + V +G R
Sbjct: 461 IAVHPARQREGTGRQLIAGALQYTQDLDYLSVSFGYTGELWRFWQRCGFVLVRMGNHRE 519
Score = 29.6 bits (66), Expect = 4.4
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 544 ILTLPPYQRQGYGKFLISFSYELSKVEGLIGSPEKPLSDLGKLSYRSYWSWVLLGILRN 602
I P QR+G G+ LI+ + + ++ + +L + R + V +G R
Sbjct: 461 IAVHPARQREGTGRQLIAGALQYTQDLDYLSVSFGYTGELWRFWQRCGFVLVRMGNHRE 519
>2gan_A 182AA long hypothetical protein; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 2.10A
{Pyrococcus horikoshii} SCOP: d.108.1.1
Length = 190
Score = 28.5 bits (63), Expect = 5.2
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 11/117 (9%)
Query: 169 EIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYIL--------CV 220
IYR N ++ K + +++ + Y +
Sbjct: 23 RIYRSTNGKYPALEWVKRKPNPNDFNGFREVYEPFLKFRLSQEFDELYTYQKDNRIIGTI 82
Query: 221 IDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 274
Y E V I P +Q +G G L+ F+ + + G
Sbjct: 83 ALVYKRIKEKGIWWVPEELMNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLG 139
Score = 28.5 bits (63), Expect = 5.2
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 11/117 (9%)
Query: 466 EIYRCGNISIYEVDGSFHKLYCQNLCLLAKLFLDHKTLYFDVDPFLFYIL--------CV 517
IYR N ++ K + +++ + Y +
Sbjct: 23 RIYRSTNGKYPALEWVKRKPNPNDFNGFREVYEPFLKFRLSQEFDELYTYQKDNRIIGTI 82
Query: 518 IDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 571
Y E V I P +Q +G G L+ F+ + + G
Sbjct: 83 ALVYKRIKEKGIWWVPEELMNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLG 139
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2,
protein structure initiative, midwest center for STR
genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB:
3f0a_A* 3k9u_A* 3ne7_A*
Length = 183
Score = 28.5 bits (64), Expect = 5.3
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 228 LVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 274
L+G+ + + + + P Y + GK L+ + ++ K +G
Sbjct: 98 LIGFIELKIIANKAE-LLRLYLKPEYTHKKIGKTLLLEAEKIMKKKG 143
Score = 28.5 bits (64), Expect = 5.3
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 525 LVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEG 571
L+G+ + + + + P Y + GK L+ + ++ K +G
Sbjct: 98 LIGFIELKIIANKAE-LLRLYLKPEYTHKKIGKTLLLEAEKIMKKKG 143
>2pr1_A Uncharacterized N-acetyltransferase YLBP; YIBP protein, coenzyme A,
structural GE PSI-2, protein structure initiative; HET:
SUC COA; 3.20A {Bacillus subtilis}
Length = 163
Score = 28.1 bits (62), Expect = 5.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 250 LPPYQRQGYGKFLISFS 266
LP YQ +GYG+ L+ F+
Sbjct: 91 LPGYQNRGYGRALVEFA 107
Score = 28.1 bits (62), Expect = 5.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 547 LPPYQRQGYGKFLISFS 563
LP YQ +GYG+ L+ F+
Sbjct: 91 LPGYQNRGYGRALVEFA 107
>2fl4_A Spermine/spermidine acetyltransferase; structural genomics, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP:
d.108.1.1
Length = 149
Score = 28.1 bits (63), Expect = 5.7
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 223 KYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLI 263
G L+GY + + L +Q QGYGK
Sbjct: 52 YDGNQLIGYAMYGRWQDGRVWLDRFLIDQRFQGQGYGKAAC 92
Score = 28.1 bits (63), Expect = 5.7
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 520 KYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLI 560
G L+GY + + L +Q QGYGK
Sbjct: 52 YDGNQLIGYAMYGRWQDGRVWLDRFLIDQRFQGQGYGKAAC 92
>1y7r_A Hypothetical protein SA2161; structural genomics, protein structure
initiative, PSI, midwest center for structural genomics;
1.70A {Staphylococcus aureus} SCOP: d.108.1.1
Length = 133
Score = 27.9 bits (62), Expect = 6.5
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 213 FLFYILCVIDKYG-AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSK 271
F + G ++G + D I L YQ Q YG ++ + K
Sbjct: 40 FTVTLYDKDRLIGMGRVIGDGGTVFQIVD------IAVLKSYQGQAYGSLIMEHIMKYIK 93
Query: 272 VEGL 275
+
Sbjct: 94 NVSV 97
Score = 27.9 bits (62), Expect = 6.5
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 510 FLFYILCVIDKYG-AHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSK 568
F + G ++G + D I L YQ Q YG ++ + K
Sbjct: 40 FTVTLYDKDRLIGMGRVIGDGGTVFQIVD------IAVLKSYQGQAYGSLIMEHIMKYIK 93
Query: 569 VEGL 572
+
Sbjct: 94 NVSV 97
>2cnt_A Modification of 30S ribosomal subunit protein S18; N-alpha
acetylation, GCN5-N-acetyltransferase, ribosomal Pro
acetyltransferase, GNAT; HET: COA; 2.4A {Salmonella
typhimurium} PDB: 2cnm_A* 2cns_A*
Length = 160
Score = 28.0 bits (63), Expect = 6.6
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 218 LCVIDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 274
L + + + + + + + P +QR+G G+ L+ + + G
Sbjct: 41 LNLKLTADDRMAAFAITQVVLDEAT----LFNIAVDPDFQRRGLGRMLLEHLIDELETRG 96
Score = 28.0 bits (63), Expect = 6.6
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 515 LCVIDKYGAHLVGYFSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKVEG 571
L + + + + + + + P +QR+G G+ L+ + + G
Sbjct: 41 LNLKLTADDRMAAFAITQVVLDEAT----LFNIAVDPDFQRRGLGRMLLEHLIDELETRG 96
>3bln_A Acetyltransferase GNAT family; NP_981174.1, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE MRD GOL; 1.31A {Bacillus
cereus}
Length = 143
Score = 27.7 bits (62), Expect = 6.8
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 219 CVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLI 276
CVI K + G+ + + D ++ I+ P +R+GY L+S+ S + +
Sbjct: 42 CVIVKEDNSISGFLTYDTNFFDCTFLSLIIVSPTKRRRGYASSLLSYMLSHSPTQKIF 99
Score = 27.7 bits (62), Expect = 6.8
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 516 CVIDKYGAHLVGYFSKEKESPDGNNVACILTLPPYQRQGYGKFLISFSYELSKVEGLI 573
CVI K + G+ + + D ++ I+ P +R+GY L+S+ S + +
Sbjct: 42 CVIVKEDNSISGFLTYDTNFFDCTFLSLIIVSPTKRRRGYASSLLSYMLSHSPTQKIF 99
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA
BIND protein; 2.50A {Tetrahymena thermophila}
Length = 172
Score = 28.1 bits (62), Expect = 7.5
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 12/80 (15%)
Query: 83 QKTYEEMDPTTAALEKEHEAITKVKYIDKIMIGKCEIDTWYFSPYP--DECKKK-----P 135
Q+ Y ++ + K Y+ ++ + Y Y K
Sbjct: 1 QRIYSSIEEIIQQAQASEIGQKKEFYVYGNLVSIQMKNKLY---YYRCTCQGKSVLKYHG 57
Query: 136 KLWICEFCLKYMTMERTYRY 155
+ CE C ++ +
Sbjct: 58 DSFFCESCQQF--INPQVHL 75
>1vkc_A Putative acetyl transferase; structural genomics, pyrococcus
furiosus southeast collaboratory for structural
genomics, secsg; 1.89A {Pyrococcus furiosus} SCOP:
d.108.1.1
Length = 158
Score = 27.4 bits (61), Expect = 9.2
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 218 LCVIDKYGAHLVGY--FSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKV 272
V + L+G+ ++ D +A I + + G G L+ + E +K
Sbjct: 63 FFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKE 122
Query: 273 EGL 275
G
Sbjct: 123 RGA 125
Score = 27.4 bits (61), Expect = 9.2
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 515 LCVIDKYGAHLVGY--FSKEKESPDGNNVACILTL---PPYQRQGYGKFLISFSYELSKV 569
V + L+G+ ++ D +A I + + G G L+ + E +K
Sbjct: 63 FFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKE 122
Query: 570 EGL 572
G
Sbjct: 123 RGA 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.457
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,012,677
Number of extensions: 669936
Number of successful extensions: 2090
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2059
Number of HSP's successfully gapped: 128
Length of query: 687
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 587
Effective length of database: 3,909,693
Effective search space: 2294989791
Effective search space used: 2294989791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.8 bits)