BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8114
         (111 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P85527|NEMS_APIME Myosuppressin OS=Apis mellifera PE=1 SV=1
          Length = 86

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 13 VTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVN 72
          + +F    LA  P QC PGF+D +P +IRK+CVALS IYEL + MESYI D  +     +
Sbjct: 1  MAIFCNNVLAALPTQCNPGFLDDLPPRIRKVCVALSRIYELGSEMESYIGDKENHITGFH 60

Query: 73 PEINQLMENGVKRQDMDHVFLRYGK 97
            I  L+++GVKRQD+DHVFLR+G+
Sbjct: 61 ESI-PLLDSGVKRQDVDHVFLRFGR 84


>sp|P61849|NEMS_DROME Dromyosuppressin OS=Drosophila melanogaster GN=Dms PE=1 SV=1
          Length = 100

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 7  LVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGS 66
          L + L+     + ++  PPL C  G V+++P  IRK+C AL    +L++A++SYI++  S
Sbjct: 12 LAIVLLAVSNTRAAVQGPPL-CQSGIVEEMPPHIRKVCQALENSDQLTSALKSYINNEAS 70

Query: 67 MDQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
              +    + L++N  KR D+DHVFLR+GK
Sbjct: 71 A---LVANSDDLLKNYNKRTDVDHVFLRFGK 98


>sp|Q9MUR9|CHLB_MESVI Light-independent protochlorophyllide reductase subunit B
           OS=Mesostigma viride GN=chlB PE=3 SV=1
          Length = 509

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 12/65 (18%)

Query: 11  LMVTLFMKKSLAMPPLQCTP-GFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQ 69
           LM  ++++K   MP +  TP G VD             S I E+ N + SY  D  S D+
Sbjct: 227 LMTAIYLEKEFKMPYVSTTPMGVVD-----------TGSCIKEIENIINSYTQDKISYDE 275

Query: 70  FVNPE 74
           +++ +
Sbjct: 276 YIDKQ 280


>sp|P51278|CHLB_PORPU Light-independent protochlorophyllide reductase subunit B
           OS=Porphyra purpurea GN=chlB PE=3 SV=1
          Length = 507

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 11  LMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDD 63
           LM  L++KK   MP +  TP  + Q    IR I   L+ +    N  E YID+
Sbjct: 226 LMTALYLKKEFNMPYIDITPMGIVQTATSIRSIQKILNALGATVN-YEKYIDE 277


>sp|A8FUH7|LFTR_SHESH Leucyl/phenylalanyl-tRNA--protein transferase OS=Shewanella
           sediminis (strain HAW-EB3) GN=aat PE=3 SV=1
          Length = 236

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 69  QFVNPEINQLMENGVKRQDMDHVFLRY--GKITSDGWV 104
           Q VNP +  L    +KR+D  ++  R+  GK+ S+ WV
Sbjct: 191 QVVNPHLESLGATALKRKDFINLLKRFRDGKVASNSWV 228


>sp|Q81BT0|Y3066_BACCR UPF0271 protein BC_3066 OS=Bacillus cereus (strain ATCC 14579 / DSM
           31) GN=BC_3066 PE=3 SV=1
          Length = 253

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 18/98 (18%)

Query: 30  PGFVDQIPFKIRKICVALSTIYEL----SNAMESYIDDNGSMDQFV------------NP 73
           PGF D I F  R + V+ S +Y+     + A+++++   G   Q V            NP
Sbjct: 64  PGFPDLIGFGRRNMNVSASEVYDYVLYQTGALDAFVKAAGGKMQHVKPHGALYNMAASNP 123

Query: 74  EINQLMENGVKRQDMDHVFLRYGKITSDGWVSPVHVYK 111
           EI   +   +    ++   L YG   S+ ++     YK
Sbjct: 124 EIADAIAKAIYH--INPSLLLYGLANSEAFIQAAEKYK 159


>sp|Q9HE11|UTP5_SCHPO U3 small nucleolar RNA-associated protein 5 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=utp5 PE=3 SV=2
          Length = 666

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 47  LSTIYELSN---AMESYIDDNGSMDQFVNPEINQLMENGVKRQDMDH 90
           LS  YE+ N    + + + ++G+++ F NP +++L +NG     + H
Sbjct: 265 LSIAYEIENPETGVLAALTNDGTIEMFENPWLSKLRQNGTNASSLSH 311


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,246,832
Number of Sequences: 539616
Number of extensions: 1440399
Number of successful extensions: 4715
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4707
Number of HSP's gapped (non-prelim): 11
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)