RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8114
         (111 letters)



>d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI,
           C-terminal (catalytic) domain {Flavobacterium
           okeanokoites [TaxId: 244]}
          Length = 193

 Score = 23.7 bits (51), Expect = 5.5
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 46  ALSTIYELSNA----MESYIDDNGSMDQFVNP 73
           A S  Y L       M+ Y+++N + ++ +NP
Sbjct: 84  AYSGGYNLPIGQADEMQRYVEENQTRNKHINP 115


>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG
           {Klebsiella pneumoniae [TaxId: 573]}
          Length = 108

 Score = 23.3 bits (50), Expect = 5.5
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 11/71 (15%)

Query: 42  KICVALSTIYELSNAMESYIDDNGSMDQFVNPEINQLMENGVKRQDMDHVFLRY------ 95
                +S +  L  A++ Y  DN        P   Q ++  V     +     Y      
Sbjct: 7   DRQKVVSDLVALEGALDMYKLDNSRY-----PTTEQGLQALVSAPSAEPHARNYPEGGYI 61

Query: 96  GKITSDGWVSP 106
            ++  D W S 
Sbjct: 62  RRLPQDPWGSD 72


>d1k8wa3 b.122.1.1 (A:251-312) Pseudouridine synthase II TruB,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 62

 Score = 22.4 bits (48), Expect = 8.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 89  DHVFLRYGKITSDGWVSP 106
           +  F+  G+I  +G V+P
Sbjct: 38  NGKFIGMGEIDDEGRVAP 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,947
Number of extensions: 18046
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 5
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)