BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8115
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62909|RS3_RAT 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=1 SV=1
Length = 243
Score = 194 bits (493), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/116 (80%), Positives = 107/116 (92%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P62908|RS3_MOUSE 40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1
Length = 243
Score = 194 bits (493), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/116 (80%), Positives = 107/116 (92%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|E2RH47|RS3_CANFA 40S ribosomal protein S3 OS=Canis familiaris GN=RPS3 PE=1 SV=1
Length = 243
Score = 194 bits (493), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/116 (80%), Positives = 107/116 (92%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q0Z8U2|RS3_PIG 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1
Length = 243
Score = 194 bits (493), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/116 (80%), Positives = 107/116 (92%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2
Length = 243
Score = 194 bits (493), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/116 (80%), Positives = 107/116 (92%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q3T169|RS3_BOVIN 40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1
Length = 243
Score = 194 bits (493), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/116 (80%), Positives = 107/116 (92%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P02350|RS31_XENLA 40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-a PE=2 SV=2
Length = 246
Score = 194 bits (492), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/116 (80%), Positives = 107/116 (92%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P79891|RS3_AMBME 40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1
Length = 253
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/116 (80%), Positives = 107/116 (92%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q5R465|RS3_PONAB 40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1
Length = 243
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/116 (79%), Positives = 107/116 (92%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F +G++ELYAE+VATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1
Length = 245
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/116 (79%), Positives = 106/116 (91%)
Query: 77 SLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGD 136
++ I +FV+DG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+
Sbjct: 2 AVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 61
Query: 137 KGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
KGRRIRELT+VVQKRF F G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 62 KGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P47835|RS32_XENLA 40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-b PE=2 SV=1
Length = 246
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 104/108 (96%)
Query: 85 QFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 144
+FVADG+F+AEL+EFLTRELAEDGYSGVE+R TP +TEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGRRIREL 69
Query: 145 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P48153|RS3_MANSE 40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1
Length = 243
Score = 188 bits (477), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/114 (80%), Positives = 103/114 (90%)
Query: 79 SICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKG 138
+I +FV DGVF+AEL+EFLTRELAEDGYSGVE+R TP R+EIIIMATRTQ+VLG+KG
Sbjct: 5 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKG 64
Query: 139 RRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
RRIRELTSVVQKRF + ++ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR
Sbjct: 65 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 118
>sp|Q06559|RS3_DROME 40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1
SV=1
Length = 246
Score = 188 bits (477), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/130 (71%), Positives = 108/130 (83%)
Query: 74 VSNSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNV 133
++ +L I +FV+DG+F+AEL+EFLTRELAEDGYSGVE+R TP+RTEIIIMAT+TQ V
Sbjct: 1 MNANLPISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQV 60
Query: 134 LGDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRY 193
LG+KGRRIRELT++VQKRF F G IELYAEKVA RGLCAIAQAESLRYKL GGLAVRR
Sbjct: 61 LGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRA 120
Query: 194 NSDVSLYCLN 203
V Y +
Sbjct: 121 CYGVLRYIME 130
>sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1
SV=1
Length = 248
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 99/108 (91%)
Query: 85 QFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 144
+FVADGVF AEL+E LTRELAEDGYSGVE+R TP RTEIII ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIREL 69
Query: 145 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
TS+VQKRFKF ++ELYAEKVA RGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q9SIP7|RS31_ARATH 40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=1
SV=1
Length = 250
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/108 (83%), Positives = 98/108 (90%)
Query: 85 QFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 144
+FVADGVF AEL+E LTRELAEDGYSGVE+R TP RTEIII ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIREL 69
Query: 145 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
TS+VQKRFKF ++ELYAEKV RGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q9M339|RS32_ARATH 40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1
SV=1
Length = 249
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/108 (83%), Positives = 98/108 (90%)
Query: 85 QFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 144
+FVADGVF AEL+E LTRELAEDGYSGVE+R TP RTEIII ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIREL 69
Query: 145 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
TS+VQKRFKF ++ELYAEKV RGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rps3 PE=1 SV=1
Length = 249
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 104/130 (80%)
Query: 74 VSNSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNV 133
+S + +I +FVADGVF AEL+EF TREL+E+GYSG E+R TP+R+EIII AT TQ+V
Sbjct: 1 MSAAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDV 60
Query: 134 LGDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRY 193
LG+KGRRIRELT++VQKRFKFA+ +ELYAEKV RGLCA+AQ ESLRYKL+ GLAVRR
Sbjct: 61 LGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRA 120
Query: 194 NSDVSLYCLN 203
V Y +
Sbjct: 121 AYGVLRYVME 130
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=3
SV=1
Length = 247
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/106 (76%), Positives = 96/106 (90%)
Query: 87 VADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTS 146
V G+F+AEL+ FL +ELAEDGYSGVE+R TPAR E+IIMATRTQNVLG++GRRI+ELTS
Sbjct: 14 VIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTS 73
Query: 147 VVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
VVQKRF F +G++ELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRR
Sbjct: 74 VVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRR 119
>sp|P05750|RS3_YEAST 40S ribosomal protein S3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS3 PE=1 SV=5
Length = 240
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 96/125 (76%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
I + VADGVF AEL+EF TRELAE+GYSGVE+R TP +TE+II ATRTQ+VLG+ GR
Sbjct: 5 ISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGR 64
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSL 199
RI ELT +VQKRFK+A G I LYAE+V RGL A+AQAES+++KL+ GLA+RR V
Sbjct: 65 RINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVR 124
Query: 200 YCLNC 204
Y +
Sbjct: 125 YVMES 129
>sp|P90526|RS3_DICDI 40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=1
SV=1
Length = 218
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
Query: 74 VSNSLSICVSLQFVADGVFRAELDEFLTRELAED-GYSGVEIRFTPARTEIIIMATRTQN 132
+++SL I +FVADGVF AEL+E TRE +D GYSGVE++ +P TEIII A++TQ
Sbjct: 1 MNSSLQISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQA 60
Query: 133 VLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
V+G RRI+EL S+VQKRF F +G + L+AEK+ RGLCA+AQAESL+ KL+ GL VR+
Sbjct: 61 VVGPNARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRK 120
>sp|Q8SQM3|RS3_ENCCU 40S ribosomal protein S3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS3 PE=1 SV=1
Length = 228
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%)
Query: 85 QFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 144
+F+ +G+ AEL EF + L +G+S +E+R +II+ + +G+K R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 145 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
+ +R + D ++E+ EKV +GLCA+ QA +R K++GG+ RR
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRR 128
>sp|C5A280|RS3_THEGJ 30S ribosomal protein S3 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rps3 PE=3 SV=1
Length = 209
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + F+ +GV +DE+L +EL GY G++I+ TP T++II A V+G GR
Sbjct: 1 MAIERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGR 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
RIRELT +++++F + IE+ E++ L A QA L L G+ RR
Sbjct: 61 RIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRR 111
>sp|Q5JDH5|RS3_PYRKO 30S ribosomal protein S3 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps3 PE=3 SV=1
Length = 209
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + F+ +GV +DEFL +EL GY G++I+ TP T++ I A V+G GR
Sbjct: 1 MAIERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGR 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
RIRELT +++K+F + IE+ E++ L A QA L L G+ RR
Sbjct: 61 RIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRR 111
>sp|B6YSL9|RS3_THEON 30S ribosomal protein S3 OS=Thermococcus onnurineus (strain NA1)
GN=rps3 PE=3 SV=1
Length = 208
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + F+ +GV +DE+L +EL GY G++I+ TP T++II A V+G GR
Sbjct: 1 MAIERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGR 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQA 177
RIRELT +++++F + IE+ E++ L A QA
Sbjct: 61 RIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQA 96
>sp|Q8U004|RS3_PYRFU 30S ribosomal protein S3 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps3 PE=1 SV=1
Length = 210
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + F+ + V +DEFL +EL GY G++I+ TP T++II A V+G GR
Sbjct: 1 MAIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGL 188
RIRELT +++K+F + IE+ E++ L A QA L L G+
Sbjct: 61 RIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGI 107
>sp|C6A165|RS3_THESM 30S ribosomal protein S3 OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=rps3 PE=3 SV=1
Length = 207
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + F+ +G+ +DE+L +EL GY G++I+ TP T+++I R V+G GR
Sbjct: 1 MAIERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGR 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESL 180
+IRELT ++++RF + IE+ E++ A QA L
Sbjct: 61 KIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRL 99
>sp|Q3IMY2|RS3_NATPD 30S ribosomal protein S3 OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=rps3 PE=3 SV=1
Length = 305
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%)
Query: 85 QFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 144
QF+ DG+ R ++DEF + EL+ GY G+E+ TP T+I++ A + V+G G+ IR++
Sbjct: 6 QFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKI 65
Query: 145 TSVVQKRFKFADGAIEL 161
T+ +++ F D +++
Sbjct: 66 TTTLEEEFGLEDPQVDV 82
>sp|O59424|RS3_PYRHO 30S ribosomal protein S3 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps3 PE=3 SV=1
Length = 210
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + F+ + V +DEFL +EL GY G++I+ TP T++II A V+G GR
Sbjct: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
RIRELT +++++F + I++ +++ L A QA + L G+ RR
Sbjct: 61 RIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRR 111
>sp|P54034|RS3_METJA 30S ribosomal protein S3 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps3 PE=3 SV=1
Length = 208
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 10/115 (8%)
Query: 86 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 145
FV + V R +DE+ +EL++ GYS +IR TP T+III A + V+G +G RIRELT
Sbjct: 6 FVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELT 65
Query: 146 SVVQKRFKFADGAI--------ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
+ K F I +L A+ VA + A + L ++ +G AVRR
Sbjct: 66 ETLAKEFGVEKPQIDVKPVENPDLDAQVVAQK--VAQSLERGLHFRRVGHTAVRR 118
>sp|P20281|RS3_HALMA 30S ribosomal protein S3 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps3 PE=3
SV=2
Length = 304
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 85 QFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 144
QF+ DG+ R ++DEF EL GY G+++ TP T+I++ A + V+G G+ IR++
Sbjct: 6 QFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKI 65
Query: 145 TSVVQKRFKFADGAIEL 161
T+ ++ RF D +++
Sbjct: 66 TTELEDRFNLDDPQVDV 82
>sp|P15009|RS3_HALSA 30S ribosomal protein S3 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rps3 PE=3 SV=3
Length = 302
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 51/82 (62%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ L+F+ G+ R+++DEF ELA GY G+E+ TP +I++ A + V+G G+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 140 RIRELTSVVQKRFKFADGAIEL 161
IR++T+ +++RF D I++
Sbjct: 61 NIRKITTQLEERFDLEDPQIDV 82
>sp|Q9V1U1|RS3_PYRAB 30S ribosomal protein S3 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps3 PE=3 SV=1
Length = 210
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + F+ + V +DEFL +EL GY G++I+ TP T++II A V+G GR
Sbjct: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
Query: 140 RIRELTSVVQKRFKFADGAIEL 161
RIRELT +++++F + I++
Sbjct: 61 RIRELTRILERQFGLENPQIDV 82
>sp|Q46GA1|RS3_METBF 30S ribosomal protein S3 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps3 PE=3 SV=1
Length = 311
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + +FV DG +A +DE+ +L GY G+E+ TP T+I+I + + V+G G+
Sbjct: 1 MAIERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGK 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSL 199
IR+LT V R+ + I+ A++V L A A L + G R+ +
Sbjct: 61 VIRKLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLR 118
Query: 200 YCLNC 204
+N
Sbjct: 119 AVMNA 123
>sp|Q18GF5|RS3_HALWD 30S ribosomal protein S3 OS=Haloquadratum walsbyi (strain DSM
16790) GN=rps3 PE=3 SV=1
Length = 323
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 85 QFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 144
QF+ +G+ R+++DEF EL GY G+++ TP T+I++ A + V+G G+ IR++
Sbjct: 6 QFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKV 65
Query: 145 TSVVQKRFKFADGAIEL 161
T ++ RF D I++
Sbjct: 66 TRELEDRFNLDDPQIDV 82
>sp|Q8TRU1|RS3_METAC 30S ribosomal protein S3 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps3 PE=3 SV=1
Length = 318
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + +FV DG +A +DE+ +L+ GY G+E+ TP T+I+I + + V+G G+
Sbjct: 1 MAIEKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGK 60
Query: 140 RIRELTSVVQKRFKFADGAI--------ELYAEKVATRGLCAIAQAESLR 181
IR+LT V ++ + I EL A+ +A+R +I + R
Sbjct: 61 VIRKLTRDVANKYSLENPQIDAQEVKRPELNAQMMASRLAASIERGWYFR 110
>sp|Q12ZU5|RS3_METBU 30S ribosomal protein S3 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps3 PE=3 SV=1
Length = 304
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ V +FV DG +A +DE+ ++L+ GY G++I TP T+I + A + V+G G+
Sbjct: 1 MAVEKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGK 60
Query: 140 RIRELTSVVQKRFKFADGAI--------ELYAEKVATR 169
IR+LT V + + + I EL A+ +A+R
Sbjct: 61 VIRKLTRDVDRLYDLDNPQIDAQEVKRPELNAQMMASR 98
>sp|Q8PV44|RS3_METMA 30S ribosomal protein S3 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps3 PE=3 SV=1
Length = 307
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + +FV DG +A +DE+ +L GY G+E+ TP T+III + + V+G G+
Sbjct: 1 MAIEKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGK 60
Query: 140 RIRELTSVVQKRFKFADGAI--------ELYAEKVATRGLCAI 174
IR+LT V ++ + I EL A+ +A+R +I
Sbjct: 61 VIRKLTRDVATKYNLENPQIDAQEVKKPELNAQMMASRLAASI 103
>sp|A2SPK9|RS3_METLZ 30S ribosomal protein S3 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps3 PE=3 SV=1
Length = 231
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + +FVADGV + ++++L +EL GY G++I TP T++ I A + V+G G+
Sbjct: 1 MTIEKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGK 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDV 197
+R+LT+ + + +E+ ++VA L A AE L L G R+ + V
Sbjct: 61 LVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSV 116
>sp|A5UL83|RS3_METS3 30S ribosomal protein S3 OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=rps3 PE=3 SV=1
Length = 250
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 81 CVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRR 140
+ FV +G+ R +DE+L +EL GY G++++ TP T +++ A R V+G G+
Sbjct: 1 MIEKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKN 60
Query: 141 IRELTSVVQKRFKFADGAIEL 161
+R +T+ ++ F + IE+
Sbjct: 61 VRAITNTLKNDFGLDNPQIEV 81
>sp|A0B9W4|RS3_METTP 30S ribosomal protein S3 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps3 PE=3 SV=1
Length = 276
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ V +FV +G +A +DE+L +EL GY G+ + TP T+I + A + V+G G+
Sbjct: 1 MAVEKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGK 60
Query: 140 RIRELTSVVQKRFKFADGAIEL 161
IR+LT +++RF+ + I++
Sbjct: 61 LIRKLTRDLERRFRLDNPQIDV 82
>sp|O26116|RS3_METTH 30S ribosomal protein S3 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps3 PE=3 SV=1
Length = 258
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 81 CVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRR 140
+ FV +G+ R +DE+L +EL GY G++++ TP T +++ A R V+G G+
Sbjct: 1 MIEKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKT 60
Query: 141 IRELTSVVQKRFKFADGAIEL 161
+R +T ++ +F + +E+
Sbjct: 61 VRAITQKLKNKFDLENPQVEV 81
>sp|A3CT03|RS3_METMJ 30S ribosomal protein S3 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps3 PE=3 SV=1
Length = 234
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + +F+ DGV +++FLT+EL GY G++I TP T++ I A + V+G G+
Sbjct: 1 MAIEKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGK 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNS 195
++R+LT + + +E+ ++V A AE L L G R+ S
Sbjct: 61 QVRQLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGS 114
>sp|Q0W1Y3|RS3_UNCMA 30S ribosomal protein S3 OS=Uncultured methanogenic archaeon RC-I
GN=rps3 PE=3 SV=1
Length = 279
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + +FV +G +A +DE+ +L GY G+EI TP T+I + A + ++G G+
Sbjct: 1 MAIEKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGK 60
Query: 140 RIRELTSVVQKRFKFADGAI--------ELYAEKVATR 169
IR T + RFK + I EL A+ +ATR
Sbjct: 61 SIRRYTKEMDMRFKMDNPQIDVQEVKKPELNAQMMATR 98
>sp|A7I5P5|RS3_METB6 30S ribosomal protein S3 OS=Methanoregula boonei (strain 6A8)
GN=rps3 PE=3 SV=1
Length = 231
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ V +F+A+G +A ++++LT+EL G+ G++I TP T++ I A + V+G G+
Sbjct: 1 MAVERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGK 60
Query: 140 RIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDV 197
+ +LT + + + IE+ ++V A AE L L G R+ S +
Sbjct: 61 LVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSI 116
>sp|Q2NFW2|RS3_METST 30S ribosomal protein S3 OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rps3 PE=3 SV=1
Length = 252
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 82 VSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRI 141
+ FV +G+ R +DE+L +L GY G++I+ TP T +I+ A + V+G G+ +
Sbjct: 2 IEKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTV 61
Query: 142 RELTSVVQKRFKFADGAIEL 161
R +T ++ F + +E+
Sbjct: 62 RAITKTLKNNFDLENPQVEV 81
>sp|Q6L1C1|RS3_PICTO 30S ribosomal protein S3 OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps3
PE=3 SV=1
Length = 217
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 85 QFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 144
+FV D + R + E+L +E G+ G+E++ TP T I + R V+G G +I+E+
Sbjct: 5 RFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEM 64
Query: 145 TSVVQKRFKFADGAIEL 161
T ++KRF IE+
Sbjct: 65 TETLEKRFAIESPQIEV 81
>sp|Q9UXA0|RS3_SULSO 30S ribosomal protein S3 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps3 PE=3 SV=1
Length = 229
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 86 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 145
F+ + + ++DE+L ++ Y+GVE+ TP T +II A R ++G GR I++L
Sbjct: 8 FLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLA 67
Query: 146 SVVQKRFKFADGAI--------ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
+ +K F + I EL A +A R AIA + ++ +++RR
Sbjct: 68 QIFEKVFGLENPQITITNVENPELNARVMAFR--LAIALEKGYHFRRAAFISMRR 120
>sp|A6UWU3|RS3_META3 30S ribosomal protein S3 OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rps3 PE=3 SV=1
Length = 208
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 86 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 145
F+ + V +DE+L +L GYS ++++ TP T I + A + V+G KG+ ++ELT
Sbjct: 6 FIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELT 65
Query: 146 SVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 192
+ ++ IE+ +++ + L A A+ + L G+ RR
Sbjct: 66 ETIATKYGVNKPQIEV--KQIESPDLDAGVVAQKIASSLERGMHFRR 110
>sp|Q4JB46|RS3_SULAC 30S ribosomal protein S3 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rps3 PE=3 SV=1
Length = 231
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGR 139
+ + F+ + +DE+L ++ Y+GVEI TP T +II A R ++G G+
Sbjct: 2 VLIKRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGK 61
Query: 140 RIRELTSVVQKRFKFADGAI--------ELYAEKVATRGLCAIAQAESLRYKLIGGLAVR 191
I++L V++K F + I EL A +A R AIA + ++ + +R
Sbjct: 62 TIKQLAQVLEKFFGLENPQITVTAAENPELNARVMAFR--LAIALEKGYHFRRAAFITIR 119
Query: 192 RYNSD 196
R S
Sbjct: 120 RIMSS 124
>sp|A6UQ49|RS3_METVS 30S ribosomal protein S3 OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rps3 PE=3 SV=1
Length = 211
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 86 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 145
F+A+ V +DE+ +L GYS +E++ TP T I + A + V+G KG+ ++ELT
Sbjct: 6 FIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELT 65
Query: 146 SVVQKRFKFADGAIEL 161
+ + +K + IE+
Sbjct: 66 DTLTEVYKVENPQIEV 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,646,493
Number of Sequences: 539616
Number of extensions: 3014212
Number of successful extensions: 7673
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 7562
Number of HSP's gapped (non-prelim): 142
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)