Query psy8115
Match_columns 218
No_of_seqs 113 out of 943
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:00:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_D RP13, YS3, 40S ribosoma 100.0 8.5E-39 2.9E-43 280.5 13.4 132 76-207 1-132 (240)
2 3iz6_B 40S ribosomal protein S 100.0 1.2E-39 4E-44 284.1 4.7 132 76-207 1-132 (227)
3 2zkq_c 40S ribosomal protein S 100.0 9.5E-39 3.2E-43 280.7 9.9 132 76-207 1-132 (243)
4 3j20_C 30S ribosomal protein S 100.0 5.3E-37 1.8E-41 264.8 12.9 126 80-207 1-126 (210)
5 2xzm_C KH domain containing pr 100.0 1.2E-36 4.1E-41 267.4 12.9 129 78-206 6-134 (243)
6 3r8n_C 30S ribosomal protein S 100.0 6.3E-36 2.2E-40 257.4 6.8 136 65-207 9-146 (206)
7 3i1m_C 30S ribosomal protein S 100.0 2.6E-35 8.7E-40 257.6 8.6 136 65-207 10-147 (233)
8 3bbn_C Ribosomal protein S3; s 100.0 3E-35 1E-39 254.7 5.4 139 65-207 10-158 (218)
9 2vqe_C 30S ribosomal protein S 100.0 1.5E-34 5.3E-39 253.5 9.9 136 65-207 10-147 (239)
10 1wh9_A 40S ribosomal protein S 99.9 6.5E-26 2.2E-30 173.0 8.1 87 88-174 4-90 (92)
11 2pt7_G HP1451, hypothetical pr 96.1 0.0079 2.7E-07 49.2 5.7 60 94-153 5-67 (152)
12 3gku_A Probable RNA-binding pr 94.0 0.12 4.2E-06 44.6 7.0 59 95-153 65-126 (225)
13 3iev_A GTP-binding protein ERA 87.6 1.2 4.1E-05 38.4 6.7 99 60-163 168-286 (308)
14 1ec6_A RNA-binding protein NOV 84.2 1.1 3.8E-05 32.1 4.0 74 120-194 4-82 (87)
15 1ega_A Protein (GTP-binding pr 84.2 3.4 0.00012 35.5 7.8 62 90-153 196-270 (301)
16 2cxc_A NUSA; transcription ter 73.1 3.4 0.00012 33.2 4.0 47 102-148 19-65 (144)
17 1dtj_A RNA-binding neurooncolo 72.9 1.3 4.3E-05 30.7 1.3 28 120-147 4-31 (76)
18 1zzk_A Heterogeneous nuclear r 72.2 1.7 5.8E-05 30.8 1.8 28 120-147 8-35 (82)
19 2opv_A KHSRP protein; KH domai 72.2 1 3.5E-05 32.2 0.7 29 120-148 15-43 (85)
20 2hh2_A KH-type splicing regula 71.1 2.2 7.5E-05 31.9 2.3 28 120-147 8-35 (107)
21 2jvf_A De novo protein M7; tet 71.1 14 0.00047 27.3 6.5 64 112-185 10-74 (96)
22 2axy_A Poly(RC)-binding protei 70.5 1 3.5E-05 31.4 0.3 29 119-147 5-33 (73)
23 1wf3_A GTP-binding protein; GT 70.2 6.5 0.00022 33.9 5.5 40 120-162 229-275 (301)
24 1wvn_A Poly(RC)-binding protei 69.9 1.5 5E-05 31.1 1.0 28 120-147 7-34 (82)
25 1x4m_A FAR upstream element bi 68.7 1.3 4.5E-05 32.4 0.6 30 120-149 16-45 (94)
26 2p2r_A Poly(RC)-binding protei 67.4 1.3 4.4E-05 30.9 0.3 28 120-147 6-33 (76)
27 1we8_A Tudor and KH domain con 67.0 3.1 0.00011 30.8 2.4 30 119-148 15-44 (104)
28 2cxc_A NUSA; transcription ter 66.9 4.4 0.00015 32.5 3.4 59 95-153 77-137 (144)
29 1vig_A Vigilin; RNA-binding pr 66.8 1.8 6.1E-05 30.0 1.0 28 120-147 6-33 (71)
30 2hh3_A KH-type splicing regula 66.6 5.8 0.0002 29.8 3.9 31 118-148 10-40 (106)
31 1x4n_A FAR upstream element bi 65.2 1.5 5.3E-05 31.8 0.4 30 118-147 14-43 (92)
32 3krm_A Insulin-like growth fac 63.9 2.2 7.4E-05 33.3 1.0 32 118-149 2-33 (163)
33 3af5_A Putative uncharacterize 63.3 4.4 0.00015 38.9 3.2 54 94-152 16-70 (651)
34 1j5k_A Heterogeneous nuclear r 62.6 1.8 6.2E-05 31.2 0.3 28 120-147 15-42 (89)
35 2dgr_A Ring finger and KH doma 59.4 1.8 6.3E-05 31.3 -0.1 27 121-147 12-38 (83)
36 2ctl_A Vigilin; K homology typ 55.9 3.4 0.00012 30.5 0.8 33 120-152 18-50 (97)
37 2cte_A Vigilin; K homology typ 54.5 3.1 0.00011 30.3 0.4 35 120-154 18-52 (94)
38 2cpq_A FragIle X mental retard 52.8 1.6 5.6E-05 32.6 -1.4 60 121-189 17-83 (91)
39 2ctk_A Vigilin; K homology typ 51.4 2.6 8.9E-05 31.6 -0.5 30 118-147 16-45 (104)
40 3h90_A Ferrous-iron efflux pum 50.5 43 0.0015 28.2 7.1 75 90-166 205-280 (283)
41 2ctm_A Vigilin; K homology typ 50.1 4 0.00014 30.0 0.4 30 120-149 18-47 (95)
42 2ycb_A Beta-CAsp RNAse, cleava 48.2 9.9 0.00034 36.3 2.9 54 94-152 7-61 (636)
43 2anr_A Neuro-oncological ventr 46.6 5.1 0.00017 31.7 0.5 30 120-149 7-36 (178)
44 2jvz_A KH type-splicing, FAR u 45.7 5.5 0.00019 30.7 0.6 27 121-147 4-30 (164)
45 2xr1_A Cleavage and polyadenyl 45.4 11 0.00038 36.1 2.7 75 95-182 79-154 (640)
46 2jzx_A Poly(RC)-binding protei 44.4 5.4 0.00018 30.9 0.3 30 120-149 6-35 (160)
47 2anr_A Neuro-oncological ventr 44.2 5.8 0.0002 31.3 0.5 29 119-147 104-132 (178)
48 2xr1_A Cleavage and polyadenyl 44.0 9.3 0.00032 36.6 2.0 54 94-152 11-65 (640)
49 2asb_A Transcription elongatio 43.4 26 0.00087 30.6 4.5 54 95-148 84-146 (251)
50 3gp2_B Calcium/calmodulin-depe 42.5 19 0.00064 20.6 2.3 20 187-206 2-21 (22)
51 1k0r_A NUSA; two component arr 42.4 25 0.00087 32.2 4.5 55 95-149 207-270 (366)
52 3krm_A Insulin-like growth fac 42.0 8.4 0.00029 29.9 1.2 29 120-148 86-114 (163)
53 1j4w_A FUSE binding protein; s 41.9 7.8 0.00027 30.5 1.0 28 120-147 105-132 (174)
54 2ycb_A Beta-CAsp RNAse, cleava 40.7 22 0.00076 33.9 4.0 75 95-182 75-150 (636)
55 3af5_A Putative uncharacterize 40.5 25 0.00087 33.6 4.4 75 95-182 84-159 (651)
56 1j4w_A FUSE binding protein; s 40.0 7.4 0.00025 30.7 0.5 29 120-148 4-32 (174)
57 1tua_A Hypothetical protein AP 39.9 14 0.00046 30.9 2.1 64 130-200 109-172 (191)
58 2jzx_A Poly(RC)-binding protei 38.9 7.2 0.00024 30.2 0.3 31 119-149 89-119 (160)
59 2jvz_A KH type-splicing, FAR u 36.1 7.1 0.00024 30.1 -0.2 27 121-147 93-119 (164)
60 2ctf_A Vigilin; K homology typ 33.8 10 0.00036 28.2 0.5 26 122-147 30-55 (102)
61 3elg_A Uncharacterized peripla 33.5 58 0.002 24.8 4.7 60 94-153 15-91 (128)
62 2qnd_A FMR1 protein; KH domain 32.9 14 0.00047 28.9 1.0 27 121-147 69-95 (144)
63 1jo0_A Hypothetical protein HI 32.0 57 0.002 24.3 4.3 52 126-184 16-70 (98)
64 4aid_A Polyribonucleotide nucl 31.9 12 0.00041 37.2 0.7 90 118-211 569-658 (726)
65 3byp_A CZRB protein; membrane 28.9 1.4E+02 0.0049 20.5 6.9 71 92-164 11-84 (94)
66 3abf_A 4-oxalocrotonate tautom 28.0 80 0.0027 20.0 4.1 29 140-168 20-48 (64)
67 3m20_A 4-oxalocrotonate tautom 27.9 40 0.0014 22.0 2.6 31 138-168 16-46 (62)
68 2asb_A Transcription elongatio 27.8 45 0.0015 29.1 3.5 50 96-145 160-210 (251)
69 1rq8_A Conserved hypothetical 27.7 85 0.0029 23.7 4.7 53 126-185 15-70 (104)
70 3n89_A Defective in GERM LINE 27.6 8.5 0.00029 35.4 -1.2 43 112-154 23-67 (376)
71 2aal_A Malonate semialdehyde d 26.9 59 0.002 24.2 3.7 51 116-168 62-112 (131)
72 3j1z_P YIIP, cation efflux fam 26.0 62 0.0021 27.9 4.1 109 53-167 178-290 (306)
73 3cdi_A Polynucleotide phosphor 25.5 26 0.00089 34.7 1.8 109 95-211 538-648 (723)
74 1hh2_P NUSA, N utilization sub 25.1 50 0.0017 29.9 3.4 51 95-145 278-329 (344)
75 1wju_A NEDD8 ultimate buster-1 24.5 1.4E+02 0.0049 22.1 5.4 50 102-161 8-62 (100)
76 3m21_A Probable tautomerase HP 24.4 70 0.0024 21.0 3.3 30 140-169 22-51 (67)
77 3c6v_A Probable tautomerase/de 23.3 88 0.003 24.9 4.2 54 115-168 77-131 (161)
78 2opa_A Probable tautomerase YW 22.8 94 0.0032 19.4 3.6 28 141-168 20-47 (61)
79 1iv3_A 2-C-methyl-D-erythritol 22.3 1.7E+02 0.0058 23.7 5.7 50 103-164 83-132 (152)
80 2ctj_A Vigilin; K homology typ 22.1 16 0.00053 26.9 -0.5 27 121-147 19-45 (95)
81 1otf_A 4-oxalocrotonate tautom 21.3 1.1E+02 0.0036 19.2 3.6 28 141-168 20-47 (62)
82 2pmp_A 2-C-methyl-D-erythritol 20.8 1.9E+02 0.0064 23.6 5.7 50 103-164 86-135 (160)
83 1t0a_A 2C-methyl-D-erythritol 20.8 1.9E+02 0.0064 23.6 5.7 50 103-164 85-134 (159)
84 3mb2_A 4-oxalocrotonate tautom 20.5 87 0.003 20.9 3.2 29 140-168 20-48 (72)
85 3ry0_A Putative tautomerase; o 20.4 96 0.0033 20.1 3.3 29 140-168 19-47 (65)
86 1gx1_A 2-C-methyl-D-erythritol 20.3 1.9E+02 0.0067 23.5 5.7 50 103-164 84-133 (160)
87 1k0r_A NUSA; two component arr 20.1 74 0.0025 29.1 3.5 60 96-162 283-343 (366)
88 3re3_A 2-C-methyl-D-erythritol 20.0 1.9E+02 0.0066 23.6 5.7 50 103-164 89-138 (162)
No 1
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=100.00 E-value=8.5e-39 Score=280.48 Aligned_cols=132 Identities=59% Similarity=0.882 Sum_probs=127.6
Q ss_pred cccchhhhhhHHhhhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCC
Q psy8115 76 NSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFA 155 (218)
Q Consensus 76 m~~~~~~ykkfV~d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~ 155 (218)
|+.+|+.+++|++|+.++++||+||.++|.++|||+|||+|++++++|+||+++||+|||++|++|++|++.|+|+|++.
T Consensus 1 ~~~~~~~~~k~vadg~~~~~ire~l~k~l~~agis~IeI~Rt~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~~~~~ 80 (240)
T 3u5c_D 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYA 80 (240)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSSCEEEEEEESCHHHHHTTTTCTHHHHHHHHHHHHTCC
T ss_pred CcccccccceEeecCchHHHHHHHHHHHHHhCCcceEEEEEcCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCCc
Q psy8115 156 DGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYTY 207 (218)
Q Consensus 156 ~kkI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA~ 207 (218)
+++|+|+++||++|++||+++|++||+|||+|++||||||++|+++|++||-
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRA~k~ai~~am~aGak 132 (240)
T 3u5c_D 81 PGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAK 132 (240)
T ss_dssp TTSSEEEEECCSCGGGCHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHTTCS
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCc
Confidence 8999999999999999999999999999999999999999999999999973
No 2
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-39 Score=284.13 Aligned_cols=132 Identities=69% Similarity=0.985 Sum_probs=119.0
Q ss_pred cccchhhhhhHHhhhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCC
Q psy8115 76 NSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFA 155 (218)
Q Consensus 76 m~~~~~~ykkfV~d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~ 155 (218)
|+.+|+.+++||+||+++++||+||.++|.+||||+|||+|++++++|+||+++||+|||++|+++++|++.|+|+|++.
T Consensus 1 ~~~~~~~~rkfv~dg~~~a~Ire~l~k~l~~agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~l~k~~~~~ 80 (227)
T 3iz6_B 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFL 80 (227)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTSSCSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHHHHHHHHCCC
T ss_pred CccchhhhhhhhhcCeehHHHHHHHHHHHHhCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCCc
Q psy8115 156 DGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYTY 207 (218)
Q Consensus 156 ~kkI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA~ 207 (218)
+++++|+++||++|++||+++||+||+|||+|++||||||+||+++|++||-
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRrA~k~ai~~~m~aGak 132 (227)
T 3iz6_B 81 ENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAK 132 (227)
T ss_dssp SCCCCCEEECCSSSTTSCSHHHHHHHTTTTTCCCHHHHHHHHHHTTTTTCCS
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCc
Confidence 8999999999999999999999999999999999999999999999999973
No 3
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.5e-39 Score=280.70 Aligned_cols=132 Identities=71% Similarity=1.056 Sum_probs=127.4
Q ss_pred cccchhhhhhHHhhhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCC
Q psy8115 76 NSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFA 155 (218)
Q Consensus 76 m~~~~~~ykkfV~d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~ 155 (218)
|+.+++.+++||+||+++.+||+||.++|.++|||+|||+|++++++|+||+++||+|||++|+++++|++.|+|+|++.
T Consensus 1 ~~~~~~~~rkfv~dgv~~~~IR~~l~k~l~~agis~IeIeRt~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~ 80 (243)
T 2zkq_c 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFP 80 (243)
T ss_dssp -CBCCCCTTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHSCTT
T ss_pred CCcchhhhhHHHhcChHHHHHHHHHHHHHHHCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchHHHHHHHHHHHHhCcC
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCCc
Q psy8115 156 DGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYTY 207 (218)
Q Consensus 156 ~kkI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA~ 207 (218)
+++++|++.||++|++||+++||+||+|||+|++||||||+||+++|++||-
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRa~k~ai~~am~aGak 132 (243)
T 2zkq_c 81 EGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAK 132 (243)
T ss_dssp TCCCCCEEEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCS
T ss_pred CceEEEEEEEecCcccCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCc
Confidence 8899999999999999999999999999999999999999999999999973
No 4
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.3e-37 Score=264.78 Aligned_cols=126 Identities=33% Similarity=0.471 Sum_probs=120.8
Q ss_pred hhhhhhHHhhhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcE
Q psy8115 80 ICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAI 159 (218)
Q Consensus 80 ~~~ykkfV~d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI 159 (218)
|..+++|++|++++.+||+||.++|.++|||+|||+|++++++|+||+++||+|||++|+++++|++.|+|+|++ +++
T Consensus 1 m~~~k~fv~~~~~d~~Ir~~l~k~l~~agis~ieI~r~~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~--~~v 78 (210)
T 3j20_C 1 MAIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGL--ENP 78 (210)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCSSCCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSC--SSC
T ss_pred CcchHHHHHhhhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCC--Cce
Confidence 357889999999999999999999999999999999999999999999999999999999999999999999986 458
Q ss_pred EEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCCc
Q psy8115 160 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYTY 207 (218)
Q Consensus 160 ~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA~ 207 (218)
.|++.||++|++||+++|++||+|||+|++||||||++|+++|++||-
T Consensus 79 ~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~Gak 126 (210)
T 3j20_C 79 QIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGAR 126 (210)
T ss_dssp EEEEEECSCTTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred EEEEEEecCCccCHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCc
Confidence 888999999999999999999999999999999999999999999873
No 5
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=100.00 E-value=1.2e-36 Score=267.36 Aligned_cols=129 Identities=41% Similarity=0.689 Sum_probs=125.5
Q ss_pred cchhhhhhHHhhhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCC
Q psy8115 78 LSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADG 157 (218)
Q Consensus 78 ~~~~~ykkfV~d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~k 157 (218)
.+++.+++|+.|++++.+||+||.++|.+||||+|||+|++++++|+||+++||+|||++|+++++|++.|+++|++.++
T Consensus 6 ~~~~~~kkfv~~~l~ed~Ir~~l~~~l~~agis~IeI~r~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~~~ 85 (243)
T 2xzm_C 6 RAINKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGYSDD 85 (243)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCEEEECCEECSSCEEEEEEESCHHHHHCSSSHHHHHHHHHHHHHHCCTTT
T ss_pred hhhhhHHHHHHhHhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEcCCCceEECCCchHHHHHHHHHHHHhCcCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCC
Q psy8115 158 AIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYT 206 (218)
Q Consensus 158 kI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA 206 (218)
+++|++.||++|++||+++|++||+|||+|++||||||+||+++|++||
T Consensus 86 ~v~I~i~eV~~p~l~A~lvAe~IA~qLe~Rv~FRRA~k~ai~~am~aGa 134 (243)
T 2xzm_C 86 QIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGA 134 (243)
T ss_dssp TSEEEEEECSCGGGCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEEecCcccCHHHHHHHHHHHHHccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999997
No 6
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=100.00 E-value=6.3e-36 Score=257.35 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=124.4
Q ss_pred HHHHhh-hhhcc-cccchhhhhhHHhhhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHH
Q psy8115 65 FRVLVN-TIGVS-NSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIR 142 (218)
Q Consensus 65 ~~~~~~-~~~~~-m~~~~~~ykkfV~d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik 142 (218)
||..++ .|.|. +|.. ++|++++.+|. +||+||.+++.++|||+|||+|+++.++|+||+++||+|||++|++++
T Consensus 9 fRlgi~~~w~S~W~a~~-k~y~~~l~eD~---~Ir~~l~k~l~~agis~ieI~r~~~~i~I~I~~~rpg~viGk~G~~i~ 84 (206)
T 3r8n_C 9 IRLGIVKPWNSTWFANT-KEFADNLDSDF---KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVE 84 (206)
T ss_dssp GGTTSSSCCSCCCCCCH-HHHHHHHHHHH---HHHHHHHHHSTTTTEEEEECCCCSSSBCCEEEESCHHHHHCSSSHHHH
T ss_pred eeecccCCceeEEcCCc-chhHHHHHHHH---HHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHH
Confidence 444443 45443 6654 69999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCCc
Q psy8115 143 ELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYTY 207 (218)
Q Consensus 143 ~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA~ 207 (218)
+|++.|+|+|+. ++.|++.||++|++||+++||+||+|||+|++||||||+||+++|++||-
T Consensus 85 ~L~~~l~k~~~~---~v~I~i~ev~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~gak 146 (206)
T 3r8n_C 85 KLRKVVADIAGV---PAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAK 146 (206)
T ss_dssp HHHHHHHHHHSS---CBCCBCCBCSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHCC---ceEEEEEecCCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHHHhhcCCC
Confidence 999999999984 48899999999999999999999999999999999999999999999973
No 7
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=100.00 E-value=2.6e-35 Score=257.64 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=124.2
Q ss_pred HHHHh-hhhhcc-cccchhhhhhHHhhhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHH
Q psy8115 65 FRVLV-NTIGVS-NSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIR 142 (218)
Q Consensus 65 ~~~~~-~~~~~~-m~~~~~~ykkfV~d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik 142 (218)
||..+ ..|.|. +|.. ++|++++.+|. +||+||.++|.++|||+|||+|+++.++|+||+++||+|||++|++++
T Consensus 10 fRlGi~~~w~S~W~a~~-k~y~~~l~eD~---kIr~~l~k~l~~agis~IeI~R~~~~i~I~I~t~rPg~vIGkkG~~I~ 85 (233)
T 3i1m_C 10 IRLGIVKPWNSTWFANT-KEFADNLDSDF---KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVE 85 (233)
T ss_dssp TTTTSSCCCSBCCCCCH-HHHHHHHHHHH---HHHHHHHHHTGGGTEEEEEBCCCSSCBCCEEEESCHHHHHCSTTHHHH
T ss_pred EeecccCCceeEEecCc-chhHHHHHHHH---HHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHH
Confidence 34444 346444 6654 69999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCCc
Q psy8115 143 ELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYTY 207 (218)
Q Consensus 143 ~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA~ 207 (218)
+|+..|+++|+. ++.|+++||++|++||+++||+||+|||+|++||||||+||+++|++||-
T Consensus 86 ~L~~~L~k~~~~---~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRramk~ai~~am~aGak 147 (233)
T 3i1m_C 86 KLRKVVADIAGV---PAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAK 147 (233)
T ss_dssp HHHHHHHHHHTS---CBCCEEEECSSGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHCC---ceEEEEEeecCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHhhhhcCCc
Confidence 999999999984 48899999999999999999999999999999999999999999999973
No 8
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3e-35 Score=254.74 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=127.0
Q ss_pred HHHHhh-hhhcc-cccchhhhhhHHhhhhHHHHHHHHHHhhhcc-----C---CeeeeEEEecCCeEEEEEEecccceEe
Q psy8115 65 FRVLVN-TIGVS-NSLSICVSLQFVADGVFRAELDEFLTRELAE-----D---GYSGVEIRFTPARTEIIIMATRTQNVL 134 (218)
Q Consensus 65 ~~~~~~-~~~~~-m~~~~~~ykkfV~d~iir~~IRefl~K~l~~-----A---GIs~IEI~Rt~~~I~IiI~aarPgiVI 134 (218)
||..++ .|.+. +|.. ++|++++.+|. +||+||.++|.+ | |||+|||+|+++.++|+||+++||+||
T Consensus 10 fRlgi~~~w~S~W~a~~-k~y~~~l~eD~---~IR~~i~~~l~~~~~~~a~~~gis~ieI~r~~~~i~I~I~~~rPg~vI 85 (218)
T 3bbn_C 10 FRLGTTQSHYSLWFSQP-KNYAEGLQEDQ---KIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLI 85 (218)
T ss_dssp SSTTTTSCCSBCCCCCT-TSSHHHHHHHH---HHHHHHHSCCSSSSCCTTTTTCEEEEEBCBSSSCBCCEEEESCTTTTS
T ss_pred eecCccCCcceEEeCCh-hHHHHHHHHHH---HHHHHHHHHHhhhcccccccCccceEEEEEcCCeEEEEEEecCCCcEe
Confidence 444444 56444 6643 69999999999 999999999997 8 999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHHHhCCCCCcEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCCc
Q psy8115 135 GDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYTY 207 (218)
Q Consensus 135 GrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA~ 207 (218)
|++|+++++|+..|++.|++.++++.|++.||++|++||.++||+||+|||+|++||||||+||+++|++||-
T Consensus 86 Gk~g~~i~~L~~~l~k~~~~~~~~v~i~i~ev~~p~l~A~lvAe~Ia~qLe~r~~fRra~k~ai~~~m~~gak 158 (218)
T 3bbn_C 86 ENRPQGVEDLKINVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTK 158 (218)
T ss_dssp CSSSCTTHHHHHHHHHHSCSSCCCCCCCEEECSCTTTSHHHHHHHSTTTTTTTCCHHHHHTHHHHHHHTTCCS
T ss_pred cCCcHHHHHHHHHHHHHhccCCceEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999997666889999999999999999999999999999999999999999999999973
No 9
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=100.00 E-value=1.5e-34 Score=253.48 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=124.5
Q ss_pred HHHHhh-hhhcc-cccchhhhhhHHhhhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHH
Q psy8115 65 FRVLVN-TIGVS-NSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIR 142 (218)
Q Consensus 65 ~~~~~~-~~~~~-m~~~~~~ykkfV~d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik 142 (218)
||..+| .|.+. +|.. ++|.+++.+|. +||+||.++|.++|||+|+|+|+++.++|+||+++||+|||++|++++
T Consensus 10 fRLgi~~~w~S~W~a~~-k~y~~~l~eD~---~IR~~l~k~l~~agis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~I~ 85 (239)
T 2vqe_C 10 FRLGITRDWESRWYAGK-KQYRHLLLEDQ---RIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIR 85 (239)
T ss_dssp TTTTSSCCCSBCCCCCT-TTHHHHHHHHH---HHHHHHHTTTTTTCEEEECBCBSSSCBCCEEEESCGGGTSCSSSSHHH
T ss_pred EecCccCCcceEEeCCH-hHHHHHHHHHH---HHHHHHHHHHHhcCCceEEEEECCCeEEEEEEeCCCcceecCCchHHH
Confidence 455444 46544 6654 69999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCCc
Q psy8115 143 ELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYTY 207 (218)
Q Consensus 143 ~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA~ 207 (218)
+|+..|+++++ +++.|++.||++|++||+++|++||+|||+|++||||||++|+++|++||-
T Consensus 86 ~L~~~L~k~~~---~~v~I~i~eVk~p~l~A~lvAe~Ia~qLe~rv~FRra~k~ai~~am~~gak 147 (239)
T 2vqe_C 86 VLREELAKLTG---KNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAK 147 (239)
T ss_dssp HHHHHHHHHST---TCCCCEEEECSCTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHhC---CeeEEEEEEecCCCcCHHHHHHHHHHHHHccchHHHHHHHHHHHHHHcCCC
Confidence 99999999996 578899999999999999999999999999999999999999999999973
No 10
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=99.92 E-value=6.5e-26 Score=173.00 Aligned_cols=87 Identities=76% Similarity=1.116 Sum_probs=84.5
Q ss_pred hhhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEEEec
Q psy8115 88 ADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVA 167 (218)
Q Consensus 88 ~d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~ 167 (218)
+||+++++||+||.++|.+||||+|||+|++++++|+|||+|||+|||++|++|++|+..|+|+|++.+++|+|+++||+
T Consensus 4 ~~gv~~~~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~ 83 (92)
T 1wh9_A 4 GSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA 83 (92)
T ss_dssp SSCSHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999987899999999999
Q ss_pred CCCcCHH
Q psy8115 168 TRGLCAI 174 (218)
Q Consensus 168 nP~l~A~ 174 (218)
+|++||+
T Consensus 84 ~P~ldA~ 90 (92)
T 1wh9_A 84 TRGSGPS 90 (92)
T ss_dssp CSCCCSC
T ss_pred CCCcCCC
Confidence 9999985
No 11
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=96.14 E-value=0.0079 Score=49.20 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhccCCee--eeEE-EecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhC
Q psy8115 94 AELDEFLTRELAEDGYS--GVEI-RFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 153 (218)
Q Consensus 94 ~~IRefl~K~l~~AGIs--~IEI-~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~ 153 (218)
.++.+||..-+...|+. .|++ ....+.+.|.|.....|++||+.|+.++.|+..++...+
T Consensus 5 ~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn 67 (152)
T 2pt7_G 5 HEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIH 67 (152)
T ss_dssp HHHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEecCCcceEECCCCcchHHHHHHHHHHhh
Confidence 36788999999999985 4677 345778999999999999999999999999999987665
No 12
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=94.05 E-value=0.12 Score=44.63 Aligned_cols=59 Identities=12% Similarity=0.281 Sum_probs=48.1
Q ss_pred HHHHHHHhhhccCCee-eeEEEec--CCeEEEEEEecccceEeccCcccHHHHHHHHHHHhC
Q psy8115 95 ELDEFLTRELAEDGYS-GVEIRFT--PARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 153 (218)
Q Consensus 95 ~IRefl~K~l~~AGIs-~IEI~Rt--~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~ 153 (218)
...+||..-|...|+. .|++.-. .+.+.|.|.....+++||++|+.++.|+..+...++
T Consensus 65 ~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 65 KAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 5668888888888884 3555432 478999999999999999999999999999888775
No 13
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=87.57 E-value=1.2 Score=38.39 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=55.3
Q ss_pred cchhhHHHHhhhhhc----ccccchh-hhhhHHhhhhHHHHHHHHHHhhhccCCeeeeEEE---ecC-----CeEEEEEE
Q psy8115 60 GFSVLFRVLVNTIGV----SNSLSIC-VSLQFVADGVFRAELDEFLTRELAEDGYSGVEIR---FTP-----ARTEIIIM 126 (218)
Q Consensus 60 ~~~~~~~~~~~~~~~----~m~~~~~-~ykkfV~d~iir~~IRefl~K~l~~AGIs~IEI~---Rt~-----~~I~IiI~ 126 (218)
|...+|..+++.+.. +...++. .-.++....+++.++.+.+..++..+ + .|+|+ ... ..|.-+|+
T Consensus 168 gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~-~-~v~i~~~~~~~~~~~~~~i~a~i~ 245 (308)
T 3iev_A 168 NLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTS-I-AVKINEIKPGDANPNMLVIKGEII 245 (308)
T ss_dssp SHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHH-C-EEEEEEEEECSSCTTSEEEEEEEE
T ss_pred CHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCe-e-EEEeEEEEEccCCCCeEEEEEEEE
Confidence 556677777665521 1111111 12233334445555555555555443 2 24442 222 36777999
Q ss_pred ecccc---eEeccCcccHHHH----HHHHHHHhCCCCCcEEEEE
Q psy8115 127 ATRTQ---NVLGDKGRRIREL----TSVVQKRFKFADGAIELYA 163 (218)
Q Consensus 127 aarPg---iVIGrkG~~Ik~L----~~~LqK~~~~~~kkI~I~I 163 (218)
+.|++ +|||++|+.|+++ +..|++.|+ .+|.+.+
T Consensus 246 ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~---~~v~l~l 286 (308)
T 3iev_A 246 VDRENLKPIIIGKKGQRLKEIGKRARQELELILG---RPVYLEL 286 (308)
T ss_dssp ESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SCEEEEE
T ss_pred EccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhC---CceEEEE
Confidence 98886 6999999999776 557777886 4554443
No 14
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=84.18 E-value=1.1 Score=32.09 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=43.1
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCC-----cEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADG-----AIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYN 194 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~k-----kI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAm 194 (218)
.+++.|-...-|.|||++|+.|++|++.=.-.....+. .-.-....|.-+ .++.-.|..+...+-.....||+-
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~~r~~ 82 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQGVRAS 82 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccccccc
Confidence 45677777888999999999999887743211111110 000001223332 356777887777776666666653
No 15
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=84.15 E-value=3.4 Score=35.49 Aligned_cols=62 Identities=29% Similarity=0.413 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHhhhccCCeeeeEEEec------CCeEEEEEEecccc---eEeccCcccHHHHH----HHHHHHhC
Q psy8115 90 GVFRAELDEFLTRELAEDGYSGVEIRFT------PARTEIIIMATRTQ---NVLGDKGRRIRELT----SVVQKRFK 153 (218)
Q Consensus 90 ~iir~~IRefl~K~l~~AGIs~IEI~Rt------~~~I~IiI~aarPg---iVIGrkG~~Ik~L~----~~LqK~~~ 153 (218)
..+|.++-+.+..++..+ ..|+|+.- ..++...|++.+.+ ++||++|+.++++. ..|++.|+
T Consensus 196 e~~re~l~~~l~~e~p~~--~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~ 270 (301)
T 1ega_A 196 EIIREKLMRFLGAELPYS--VTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFE 270 (301)
T ss_dssp HHHHHHHHHHHGGGCCTT--EEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCeE--EEEEEEEEEecCCCeEEEEEEEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHC
Confidence 344555556655555444 44667622 34677888886654 69999999997774 56777776
No 16
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=73.12 E-value=3.4 Score=33.19 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=39.2
Q ss_pred hhhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHH
Q psy8115 102 RELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVV 148 (218)
Q Consensus 102 K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~L 148 (218)
..+.++.+-++-+--..+++.+.+....-|..||.+|++++.+.+.|
T Consensus 19 e~~t~a~~~dcvid~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~el 65 (144)
T 2cxc_A 19 HSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREAL 65 (144)
T ss_dssp HHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhCCCeeeEEEeCCCCEEEEEEeCCCccccCccCchHHHHHHHHh
Confidence 35667888888776667999999988888999999999999988766
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=72.92 E-value=1.3 Score=30.71 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=23.0
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
..++.|-..+-|.|||++|+.|++|++.
T Consensus 4 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 31 (76)
T 1dtj_A 4 LVEMAVPENLVGAILGKGGKTLVEYQEL 31 (76)
T ss_dssp EEEEEEETTTHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEChHHcceEECCCchHHHHHHHH
Confidence 3566777788899999999999988774
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=72.22 E-value=1.7 Score=30.81 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=23.5
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
..++.|...+-+.|||++|+.|++|++.
T Consensus 8 ~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~ 35 (82)
T 1zzk_A 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHE 35 (82)
T ss_dssp EEEEEEETTTGGGGTCGGGHHHHHHHHH
T ss_pred EEEEEEChHhcCeeECCCchHHHHHHHH
Confidence 4567777888899999999999998875
No 19
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=72.16 E-value=1 Score=32.20 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=23.8
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVV 148 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~L 148 (218)
..+|.|-..+-|.|||++|+.|++|++.-
T Consensus 15 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 43 (85)
T 2opv_A 15 VQEIMIPAGKAGLVIGKGGETIKQLQERA 43 (85)
T ss_dssp EEEEEECTTTHHHHHTTTTHHHHHHHHHH
T ss_pred EEEEEeChhheeeeECCCCHHHHHHHHHH
Confidence 35677788889999999999999887753
No 20
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=71.08 E-value=2.2 Score=31.95 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=24.2
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
.+++.|-..+-+.|||++|+.|++|++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~ 35 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQ 35 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHH
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHH
Confidence 4677888899999999999999988764
No 21
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=71.05 E-value=14 Score=27.33 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=41.0
Q ss_pred eEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhC-CCCCcEEEEEEEecCCCcCHHHHHHHHHHHHH
Q psy8115 112 VEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK-FADGAIELYAEKVATRGLCAIAQAESLRYKLI 185 (218)
Q Consensus 112 IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~-~~~kkI~I~I~EV~nP~l~A~llAe~IA~QLE 185 (218)
|.|+|....|+|.|.+.- |++++.--..|+|.+. -..+++.|.+. ..-+-.|.-+-+.||.-|.
T Consensus 10 ikiqrdgqeieidirvst--------gkeleralqelekalaragarnvqitis--aendeqakelleliarllq 74 (96)
T 2jvf_A 10 IKIQRDGQEIEIDIRVST--------GKELERALQELEKALARAGARNVQITIS--AENDEQAKELLELIARLLQ 74 (96)
T ss_dssp EEEEETTEEEEEEEECCS--------SSHHHHHHHHHHHHHHHHTCSEEEEEEE--CSSHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCeEEEEEEEEcc--------cHHHHHHHHHHHHHHHhccccceEEEEE--ecChHHHHHHHHHHHHHHH
Confidence 788999999999988754 6666555555555431 12466776553 4445566667777776554
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=70.51 E-value=1 Score=31.42 Aligned_cols=29 Identities=10% Similarity=0.426 Sum_probs=24.2
Q ss_pred CeEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 119 ARTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 119 ~~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
..+++.|...+-|.|||++|+.|++|++.
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~ 33 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREE 33 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHH
Confidence 35667788888899999999999998874
No 23
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=70.22 E-value=6.5 Score=33.90 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=29.9
Q ss_pred eEEEEEEecccc---eEeccCcccHHHH----HHHHHHHhCCCCCcEEEE
Q psy8115 120 RTEIIIMATRTQ---NVLGDKGRRIREL----TSVVQKRFKFADGAIELY 162 (218)
Q Consensus 120 ~I~IiI~aarPg---iVIGrkG~~Ik~L----~~~LqK~~~~~~kkI~I~ 162 (218)
.+...|++.+++ +|||++|+.|+++ +..|++.|+ .+|.+.
T Consensus 229 ~i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~---~~v~l~ 275 (301)
T 1wf3_A 229 YIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLG---KKVYLD 275 (301)
T ss_dssp EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SEEEEE
T ss_pred EEEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHC---CceEEE
Confidence 566688998885 6999999999766 557777886 455443
No 24
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=69.87 E-value=1.5 Score=31.11 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=23.0
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
..++.|-..+-|.|||++|+.|++|++.
T Consensus 7 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 34 (82)
T 1wvn_A 7 THELTIPNNLIGCIIGRQGANINEIRQM 34 (82)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEchHhccceeCCCchhHHHHHHH
Confidence 3566777788889999999999988874
No 25
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=68.75 E-value=1.3 Score=32.35 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=24.3
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVVQ 149 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~Lq 149 (218)
..+|.|-..+-+.|||++|+.|++|++.-.
T Consensus 16 ~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tg 45 (94)
T 1x4m_A 16 VQEIMIPASKAGLVIGKGGETIKQLQERAG 45 (94)
T ss_dssp EEEEEECHHHHHHHSCSSSSHHHHHHHHHT
T ss_pred EEEEEEChhhcceEECCCCHHHHHHHHHHC
Confidence 456677778889999999999999887544
No 26
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=67.45 E-value=1.3 Score=30.86 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=22.8
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
..++.|-..+-|.|||++|+.|++|++.
T Consensus 6 ~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~ 33 (76)
T 2p2r_A 6 SHELTIPNDLIGCIIGRQGAKINEIRQM 33 (76)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChHHcceEECCCChHHHHHHHH
Confidence 3566677778889999999999988774
No 27
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=66.97 E-value=3.1 Score=30.81 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=24.8
Q ss_pred CeEEEEEEecccceEeccCcccHHHHHHHH
Q psy8115 119 ARTEIIIMATRTQNVLGDKGRRIRELTSVV 148 (218)
Q Consensus 119 ~~I~IiI~aarPgiVIGrkG~~Ik~L~~~L 148 (218)
...+|.|-..+-|.|||++|+.|++|++.-
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 44 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKAS 44 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHH
Confidence 356777888899999999999999888753
No 28
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=66.91 E-value=4.4 Score=32.54 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=43.4
Q ss_pred HHHHHHHhhhccCCeeeeEEEecCC--eEEEEEEecccceEeccCcccHHHHHHHHHHHhC
Q psy8115 95 ELDEFLTRELAEDGYSGVEIRFTPA--RTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 153 (218)
Q Consensus 95 ~IRefl~K~l~~AGIs~IEI~Rt~~--~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~ 153 (218)
...+|+.+.|.-|.+.+|.+.-... ...|.+.-..-+..||++|++++-........++
T Consensus 77 d~~~fI~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~id 137 (144)
T 2cxc_A 77 DLERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG 137 (144)
T ss_dssp SHHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeC
Confidence 3568888889999999999874333 3444444445567999999999888887776665
No 29
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=66.80 E-value=1.8 Score=30.04 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.3
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
..++.|...+-+.|||++|+.|++|++.
T Consensus 6 ~~~i~I~~~~ig~iIG~gG~~I~~I~e~ 33 (71)
T 1vig_A 6 YVEINIDHKFHRHLIGKSGANINRIKDQ 33 (71)
T ss_dssp EEEEEECSSHHHHHTCSSCCHHHHHHHH
T ss_pred EEEEEECHHHhhhhcCCCCccHHHHHHH
Confidence 4566777788889999999999998875
No 30
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=66.64 E-value=5.8 Score=29.79 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCeEEEEEEecccceEeccCcccHHHHHHHH
Q psy8115 118 PARTEIIIMATRTQNVLGDKGRRIRELTSVV 148 (218)
Q Consensus 118 ~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~L 148 (218)
+..++|.|...+-+.|||++|+.|++|++.-
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~T 40 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDA 40 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHH
Confidence 3457788888999999999999999987753
No 31
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=65.16 E-value=1.5 Score=31.82 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=23.9
Q ss_pred CCeEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 118 PARTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 118 ~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
....++.|-..+-+.|||++|+.|++|++.
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~ 43 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQE 43 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHH
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHH
Confidence 335667777788899999999999987764
No 32
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=63.87 E-value=2.2 Score=33.34 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=26.5
Q ss_pred CCeEEEEEEecccceEeccCcccHHHHHHHHH
Q psy8115 118 PARTEIIIMATRTQNVLGDKGRRIRELTSVVQ 149 (218)
Q Consensus 118 ~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~Lq 149 (218)
+..+++.|...+-|.|||++|+.|++|++.-.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg 33 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFAS 33 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHT
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHC
Confidence 34577888889999999999999999887544
No 33
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=63.26 E-value=4.4 Score=38.94 Aligned_cols=54 Identities=19% Similarity=0.448 Sum_probs=39.4
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHh
Q psy8115 94 AELDEFLTREL-AEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRF 152 (218)
Q Consensus 94 ~~IRefl~K~l-~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~ 152 (218)
.+|++-+.+.+ .++.+++||.+ +-+|.||+-.|..+.. ++.-+++|-+.|+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 70 (651)
T 3af5_A 16 RDIRAVVNQMVPKEAKITEIEFE----GPELVIYVKNPEAIMK-DGELIKDLAKVLKKRI 70 (651)
T ss_dssp HHHHHHHTTTSCTTSCEEEEEEC----SSSEEEEESSCC------CCSHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCeEEEEeCCHHHhhc-ccHHHHHHHHHhhceE
Confidence 47777777777 67899999885 5678999999999874 4567888888888754
No 34
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=62.62 E-value=1.8 Score=31.19 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=22.5
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
..++.|...+-+.|||++|+.|++|++.
T Consensus 15 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 42 (89)
T 1j5k_A 15 TTQVTIPKDLAGSIIGKGGQRIKQIRHE 42 (89)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChhhcceeECCCCHhHHHHHHH
Confidence 3456677778889999999999988774
No 35
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.37 E-value=1.8 Score=31.29 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=21.2
Q ss_pred EEEEEEecccceEeccCcccHHHHHHH
Q psy8115 121 TEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 121 I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
+++.|-..+-|.|||++|+.|++|++.
T Consensus 12 ~~i~VP~~~vG~IIGkgG~tIk~Iqe~ 38 (83)
T 2dgr_A 12 IQVRVPYRVVGLVVGPKGATIKRIQQR 38 (83)
T ss_dssp EEEECCHHHHHHHHTTTTSSHHHHHHH
T ss_pred EEEEeChHHeeeeECCCchHHHHHHHH
Confidence 445555566778999999999998875
No 36
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=55.88 E-value=3.4 Score=30.47 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=25.5
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHHHHHh
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVVQKRF 152 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~ 152 (218)
.+.+.|-..+-+.|||++|+.|++|++.-.-+.
T Consensus 18 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I 50 (97)
T 2ctl_A 18 KLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNI 50 (97)
T ss_dssp EEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEE
T ss_pred eEEEEECHHHhhhcCCCCchhHHHHHHHHCCEE
Confidence 566677777888999999999999887544333
No 37
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=54.45 E-value=3.1 Score=30.35 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=25.1
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHHHHHhCC
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKF 154 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~ 154 (218)
..++.|-..+-+.|||++|+.|++|++.-.-+..+
T Consensus 18 t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i 52 (94)
T 2cte_A 18 SATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQI 52 (94)
T ss_dssp EEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBC
T ss_pred EEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEe
Confidence 34555666777889999999999988754444433
No 38
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=52.78 E-value=1.6 Score=32.60 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=38.6
Q ss_pred EEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEE-EEEE------EecCCCcCHHHHHHHHHHHHHcChh
Q psy8115 121 TEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIE-LYAE------KVATRGLCAIAQAESLRYKLIGGLA 189 (218)
Q Consensus 121 I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~-I~I~------EV~nP~l~A~llAe~IA~QLEkRv~ 189 (218)
.++.|...+-+.+||++|+.|+++++. ++ +. |.+. .|.-++.+|.--|..+-+.+|..++
T Consensus 17 ~~i~I~~dkIg~vIG~gGk~Ik~I~e~----tG-----v~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie~~~~ 83 (91)
T 2cpq_A 17 EEFVVREDLMGLAIGTHGSNIQQARKV----PG-----VTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQ 83 (91)
T ss_dssp EEEECCHHHHHHHHTTTTHHHHHHHTS----TT-----EEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCCCCCC
T ss_pred EEEEEChHHhhhhcCCCcHHHHHHHHH----hC-----CeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhheEEe
Confidence 445555667788999999999988763 33 22 3334 2555666777667666666665543
No 39
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=51.37 E-value=2.6 Score=31.56 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCeEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 118 PARTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 118 ~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
|...++.|-..+-+.|||++|+.|++|++.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~ee 45 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDE 45 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHH
Confidence 445666777778889999999999988774
No 40
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=50.48 E-value=43 Score=28.23 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecccceE-eccCcccHHHHHHHHHHHhCCCCCcEEEEEEEe
Q psy8115 90 GVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNV-LGDKGRRIRELTSVVQKRFKFADGAIELYAEKV 166 (218)
Q Consensus 90 ~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiV-IGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV 166 (218)
.....+|++.+.+.-.-.++.++.+.+......+.+|..-|... +.+-.+-.+++++.|++.++ ...+.|.+++.
T Consensus 205 ~~~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~--~~~v~ih~ep~ 280 (283)
T 3h90_A 205 DEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP--GSDVIIHQDPC 280 (283)
T ss_dssp HHHHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHST--TCEEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCC--CCeEEEEeccC
Confidence 34455677777653122346667777777777888887766432 11112234677777777776 35677777654
No 41
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=50.08 E-value=4 Score=30.02 Aligned_cols=30 Identities=13% Similarity=0.395 Sum_probs=24.1
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVVQ 149 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~Lq 149 (218)
..++.|-..+-+.|||++|+.|++|++.-.
T Consensus 18 t~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg 47 (95)
T 2ctm_A 18 SEDVPLDHRVHARIIGARGKAIRKIMDEFK 47 (95)
T ss_dssp CEEEECCTTTHHHHHCSSSCHHHHHHHHHT
T ss_pred EEEEEECHHHccccCCCCcchHHHHHHHHC
Confidence 456667777888999999999999887544
No 42
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=48.21 E-value=9.9 Score=36.31 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=42.0
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHh
Q psy8115 94 AELDEFLTREL-AEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRF 152 (218)
Q Consensus 94 ~~IRefl~K~l-~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~ 152 (218)
.+|++-+.+.+ .++.+++||.+ +-+|.||+-.|..+. .++.-+++|-+.|+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 61 (636)
T 2ycb_A 7 EEIKRTIMQRLPERVQVAKVEFE----GPEVVIYTKNPEIIT-ENGNLIRDIAKDIRKRI 61 (636)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEEE----TTEEEEEESCTHHHH-SCTHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCEEEEEeCCHHHhh-cccHHHHHHHHHhhceE
Confidence 46777777777 67899999986 578999999999887 44566788888777754
No 43
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=46.64 E-value=5.1 Score=31.68 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=24.5
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVVQ 149 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~Lq 149 (218)
.+++.|...+-|.|||++|+.|++|++.-.
T Consensus 7 ~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg 36 (178)
T 2anr_A 7 FLKVLIPSYAAGSIIGKGGQTIVQLQKETG 36 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEChhHeeeeECCCcHHHHHHHHHhC
Confidence 356677778889999999999999887544
No 44
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=45.66 E-value=5.5 Score=30.75 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=22.1
Q ss_pred EEEEEEecccceEeccCcccHHHHHHH
Q psy8115 121 TEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 121 I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
.++.|-..+-|.|||++|+.|++|++.
T Consensus 4 ~~~~Vp~~~~g~iIGk~G~~Ik~i~~~ 30 (164)
T 2jvz_A 4 QEIMIPAGKAGLVIGKGGETIKQLQER 30 (164)
T ss_dssp EEEEECTTCHHHHTCTTTHHHHHHHHT
T ss_pred EEEEechhheeEEECCChHHHHHHHHH
Confidence 456667778889999999999988863
No 45
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=45.42 E-value=11 Score=36.13 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=46.4
Q ss_pred HHHHHHHhhh-ccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEEEecCCCcCH
Q psy8115 95 ELDEFLTREL-AEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCA 173 (218)
Q Consensus 95 ~IRefl~K~l-~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A 173 (218)
+-++++.+-. .+||+.+ |.-.++.-+|.|++.+|++++|+.|..++++.. ..+.. - ..+..|-...
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~----~~~~~---~----~~~~~p~~~~ 145 (640)
T 2xr1_A 79 DSISIIEEVVPKESVISS--YYFDPDSGEVIIEAEKPGLVIGKHGATLREITK----QIGWI---P----KVVRTPPIKS 145 (640)
T ss_dssp HHHHHHHHHSCGGGCEEE--EEECTTTSEEEEEESSHHHHHCSSSHHHHHHHH----HHCSE---E----EEEECCSSCC
T ss_pred HHHHHHHHhCCCccCccc--eeecCCCceEEEEeCCCCcccccchhhHHHHHh----ccCcc---c----ccccCCCcch
Confidence 3334444433 2688875 555677889999999999999999876666554 44431 1 1233565555
Q ss_pred HHHHHHHHH
Q psy8115 174 IAQAESLRY 182 (218)
Q Consensus 174 ~llAe~IA~ 182 (218)
..++...+.
T Consensus 146 ~~~~~i~~~ 154 (640)
T 2xr1_A 146 RTVKNIREF 154 (640)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555544443
No 46
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=44.41 E-value=5.4 Score=30.91 Aligned_cols=30 Identities=10% Similarity=0.403 Sum_probs=24.4
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVVQ 149 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~Lq 149 (218)
.+++.|...+-|.|||++|+.|++|++.-.
T Consensus 6 ~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg 35 (160)
T 2jzx_A 6 TIRLLMHGKEVGSIIGKKGESVKKMREESG 35 (160)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEchhheeeeECCCcHHHHHHHHHHC
Confidence 456777778889999999999999887543
No 47
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=44.25 E-value=5.8 Score=31.32 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=24.0
Q ss_pred CeEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 119 ARTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 119 ~~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
..+++.|...+-|.|||++|+.|++|++.
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 35677888888899999999999987753
No 48
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=44.04 E-value=9.3 Score=36.62 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=40.7
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHh
Q psy8115 94 AELDEFLTREL-AEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRF 152 (218)
Q Consensus 94 ~~IRefl~K~l-~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~ 152 (218)
.+|++-+.+.+ .++.|++||.+ +-+|.||+-.|..+.. ++.-+++|-+.|+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 65 (640)
T 2xr1_A 11 LDLKHKIEKNLPAGVTITDVEFE----GPQLVLYTEEPRKFAD-DGNIIRNLAKELRTRI 65 (640)
T ss_dssp HHHHHHHHHHSCTTCCCCCEEEE----TTEEEEEESCHHHHHH-CTHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCEEEEEeCCHHHhcc-ccHHHHHHHHHhhceE
Confidence 36667777777 67899999986 4689999999998863 4556777777777643
No 49
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=43.44 E-value=26 Score=30.64 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=36.0
Q ss_pred HHHHHHHhhhccCCeeeeEE---Eec-CCeEEEEEEecccce-----EeccCcccHHHHHHHH
Q psy8115 95 ELDEFLTRELAEDGYSGVEI---RFT-PARTEIIIMATRTQN-----VLGDKGRRIRELTSVV 148 (218)
Q Consensus 95 ~IRefl~K~l~~AGIs~IEI---~Rt-~~~I~IiI~aarPgi-----VIGrkG~~Ik~L~~~L 148 (218)
.++++|..+..+-.=+-||| -|- ..+.+|-+++.-|++ -||.+|.+++.+.+.|
T Consensus 84 lvk~Lfe~EVPEI~dG~veI~~iaRe~G~R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL 146 (251)
T 2asb_A 84 LVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSEL 146 (251)
T ss_dssp HHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcchHhhcCeEEEEEEecCCCceeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHh
Confidence 44455555554422222454 455 489999999988864 7999999998886544
No 50
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain; metal binding protein, ATP-binding, calmodulin- binding, nucleotide-binding; 1.46A {Homo sapiens}
Probab=42.48 E-value=19 Score=20.56 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=17.0
Q ss_pred ChhHHHHHHHHHHHHHHcCC
Q psy8115 187 GLAVRRYNSDVSLYCLNCYT 206 (218)
Q Consensus 187 Rv~FRRAmK~AIr~amkaGA 206 (218)
+..+||.+|.+|..+|-+.|
T Consensus 2 kFNaRRKLK~aIl~~~~~t~ 21 (22)
T 3gp2_B 2 SFNARRKLKGAILTTMLATA 21 (26)
T ss_pred cccHHHHHHHHHHHHHHHhc
Confidence 45789999999999988765
No 51
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=42.38 E-value=25 Score=32.23 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=36.9
Q ss_pred HHHHHHHhhhccCCeeeeEEE---ec-CCeEEEEEEecccc-----eEeccCcccHHHHHHHHH
Q psy8115 95 ELDEFLTRELAEDGYSGVEIR---FT-PARTEIIIMATRTQ-----NVLGDKGRRIRELTSVVQ 149 (218)
Q Consensus 95 ~IRefl~K~l~~AGIs~IEI~---Rt-~~~I~IiI~aarPg-----iVIGrkG~~Ik~L~~~Lq 149 (218)
.+++.|..+..+-.=+-|||. |- ..+.+|-+++.-|+ ..||.+|++++.+.+.|.
T Consensus 207 lv~~Lfe~EVPEI~dG~VeIk~iARepG~RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~ 270 (366)
T 1k0r_A 207 LVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELS 270 (366)
T ss_dssp HHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcchhhcCCeEEEEEEEecCCCeEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhC
Confidence 444555555444222235554 44 58999999997765 589999999998887763
No 52
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=42.05 E-value=8.4 Score=29.86 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=23.7
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVV 148 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~L 148 (218)
..++.|-...-|.|||++|+.|++|++.-
T Consensus 86 ~~~i~vp~~~~g~iIGkgG~~I~~i~~~t 114 (163)
T 3krm_A 86 ETHIRVPASAAGRVIGKGGKTVNELQNLT 114 (163)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEcChhheeeEEcCCChHHHHHHHHh
Confidence 34677777888999999999999987744
No 53
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=41.94 E-value=7.8 Score=30.52 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=23.5
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
.+++.|-..+-|.|||++|+.|++|++.
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 5677778888899999999999988764
No 54
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=40.67 E-value=22 Score=33.86 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=46.8
Q ss_pred HHHHHHHhhh-ccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEEEecCCCcCH
Q psy8115 95 ELDEFLTREL-AEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCA 173 (218)
Q Consensus 95 ~IRefl~K~l-~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A 173 (218)
+-++++.+-. .+||+.+| .-.++.-+|.|++.+||+++|+.|..++++.. ..+..+ ..+..|-...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~g~~~~~~~~i~~----~~~~~~-------~~~~~p~~~~ 141 (636)
T 2ycb_A 75 KAIRKIHEIVPEEAKITNI--SFDDVTCEVIIEARKPGLVIGKYGSTSREIVK----NTGWAP-------KILRTPPISS 141 (636)
T ss_dssp HHHHHHHHTSCSTTCEEEE--EEETTTTEEEEEESCTHHHHCTTSHHHHHHHH----HHCCEE-------EEEECCSSCC
T ss_pred HHHHHHHHhCCCccCccce--EecCCCceEEEEECCCCccccccchhHHHHhh----ccCCcc-------ceeecCCcch
Confidence 4445555444 26888765 44566788999999999999999876666544 555321 1233666665
Q ss_pred HHHHHHHHH
Q psy8115 174 IAQAESLRY 182 (218)
Q Consensus 174 ~llAe~IA~ 182 (218)
..+....+.
T Consensus 142 ~~~~~i~~~ 150 (636)
T 2ycb_A 142 EIIERIRRT 150 (636)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555544443
No 55
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=40.53 E-value=25 Score=33.62 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=46.2
Q ss_pred HHHHHHHhhh-ccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEEEecCCCcCH
Q psy8115 95 ELDEFLTREL-AEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCA 173 (218)
Q Consensus 95 ~IRefl~K~l-~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A 173 (218)
+-++++.+-. .+||+.+| .-.++.-+|.|++.+|++++|+.|..++++.. ..+.. - ..+..|-...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~----~~~~~---~----~~~~~p~~~~ 150 (651)
T 3af5_A 84 EAEKLIFEIVPKEAEITNI--AFDPSVGEVLIEAKKPGLVIGKNGETLRLITQ----KVKWA---P----KVVRTPPLQS 150 (651)
T ss_dssp HHHHHHHHHSCGGGCCCEE--EEETTTTEEEEEESSTTTTSCTTSHHHHHHHH----HHCSE---E----EEEECCSSCC
T ss_pred HHHHHHHHhCCCccCccce--eecCCCceEEEEECCCCccccccchhHHHHhh----ccCcc---c----ccccCCCCCc
Confidence 3344444433 26888764 44566788999999999999999876666554 44431 1 1233555555
Q ss_pred HHHHHHHHH
Q psy8115 174 IAQAESLRY 182 (218)
Q Consensus 174 ~llAe~IA~ 182 (218)
..++...+.
T Consensus 151 ~~~~~i~~~ 159 (651)
T 3af5_A 151 QTIYSIRQI 159 (651)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555554444
No 56
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=40.03 E-value=7.4 Score=30.66 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.9
Q ss_pred eEEEEEEecccceEeccCcccHHHHHHHH
Q psy8115 120 RTEIIIMATRTQNVLGDKGRRIRELTSVV 148 (218)
Q Consensus 120 ~I~IiI~aarPgiVIGrkG~~Ik~L~~~L 148 (218)
..++.|-..+-|.|||++|+.|++|++.-
T Consensus 4 ~~~~~vp~~~vg~iIGkgG~~Ik~i~~~t 32 (174)
T 1j4w_A 4 MIDVPIPRFAVGIVIGRNGEMIKKIQNDA 32 (174)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEChhheeeeecCCchHHHHHHHHh
Confidence 35667777888999999999999988754
No 57
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=39.91 E-value=14 Score=30.87 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=36.3
Q ss_pred cceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q psy8115 130 TQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDVSLY 200 (218)
Q Consensus 130 PgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~AIr~ 200 (218)
-|.+||++|+.++.|...-.-.....+..|.| +-.+ ++.-+|......|-.+.+. -.++..+++
T Consensus 109 ~GrIIGk~G~tik~iE~~Tg~~I~v~~~~v~i----~G~~--~~i~~Ar~~i~~li~g~~h-~~vy~~~~~ 172 (191)
T 1tua_A 109 KGRIIGEGGRARRTIEEMTDTYINVGEYEVAI----IGDY--ERAMAAKQAIEMLAEGRMH-STVYRHLER 172 (191)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECSSEEEE----EEEH--HHHHHHHHHHHHHHTTCCH-HHHHHHHHH
T ss_pred hhheeCCCccHHHHHHHHHCceEEEcCCEEEE----EeCh--HHHHHHHHHHHHHHcCCCc-hhHHHHHHH
Confidence 48899999999988776443333333343332 3332 4457777777777555433 333443443
No 58
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=38.91 E-value=7.2 Score=30.18 Aligned_cols=31 Identities=16% Similarity=0.423 Sum_probs=24.8
Q ss_pred CeEEEEEEecccceEeccCcccHHHHHHHHH
Q psy8115 119 ARTEIIIMATRTQNVLGDKGRRIRELTSVVQ 149 (218)
Q Consensus 119 ~~I~IiI~aarPgiVIGrkG~~Ik~L~~~Lq 149 (218)
...++.|-...-|.|||++|+.|++|++.-.
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tg 119 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTG 119 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHS
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhC
Confidence 3566777778888999999999998877543
No 59
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=36.14 E-value=7.1 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=22.6
Q ss_pred EEEEEEecccceEeccCcccHHHHHHH
Q psy8115 121 TEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 121 I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
+++.|....-|.|||++|+.|++|++.
T Consensus 93 ~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 93 IDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp BCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEChhhccccCCCCcHhHHHHHHH
Confidence 566777788899999999999988764
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=33.84 E-value=10 Score=28.17 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=19.7
Q ss_pred EEEEEecccceEeccCcccHHHHHHH
Q psy8115 122 EIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 122 ~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
+|.|-...-+.+||++|..|++|++.
T Consensus 30 ~i~vp~~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 30 SVAAPSWLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp EEECCSTTHHHHHTTTTCHHHHHHHH
T ss_pred EEEeCHHHHhhhcCCCCccHHHHHHH
Confidence 34444455568999999999999885
No 61
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=33.51 E-value=58 Score=24.81 Aligned_cols=60 Identities=5% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhccCCeeeeEEEec---CCeEEEEE------EecccceEeccCcc--cH------HHHHHHHHHHhC
Q psy8115 94 AELDEFLTRELAEDGYSGVEIRFT---PARTEIII------MATRTQNVLGDKGR--RI------RELTSVVQKRFK 153 (218)
Q Consensus 94 ~~IRefl~K~l~~AGIs~IEI~Rt---~~~I~IiI------~aarPgiVIGrkG~--~I------k~L~~~LqK~~~ 153 (218)
..+++|+.++|.++.+..++++|. ...-+|.+ +-..-|..+.-++. .| +.+++.+++.+.
T Consensus 15 ~~~~~fi~~~fp~~~i~~v~~e~~~~~~~~YeV~l~ng~el~Fd~~G~w~~id~~~~~ip~~~lP~~V~~~i~~~yp 91 (128)
T 3elg_A 15 VAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVKLADGIELEFNSKGEWLEIDCKNKSVPSTFIPQAISKYMKANYN 91 (128)
T ss_dssp HHHHHHHHHHCTTSCEEEEEEEECTTCCEEEEEEETTSCEEEECTTSCEEEEECTTSCCCGGGSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHCCCCceEEEEEEcccCcCceEEEEECCCcEEEEeCCCCEEEecCCCCcCchHHCCHHHHHHHHHHCC
Confidence 367889999999999999999997 22333332 22333444443321 21 557777777764
No 62
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=32.90 E-value=14 Score=28.86 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEEecccceEeccCcccHHHHHHH
Q psy8115 121 TEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 121 I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
.+|.+....-+.+||++|+.++.+.+.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 667777778889999999999887763
No 63
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=31.99 E-value=57 Score=24.28 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=35.9
Q ss_pred EecccceEeccCccc---HHHHHHHHHHHhCCCCCcEEEEEEEecCCCcCHHHHHHHHHHHH
Q psy8115 126 MATRTQNVLGDKGRR---IRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKL 184 (218)
Q Consensus 126 ~aarPgiVIGrkG~~---Ik~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A~llAe~IA~QL 184 (218)
|.-+|-+.||++|-. ++++.+.|++.=- |.| .=..+...+..-+|+.|+++.
T Consensus 16 h~l~pvv~IGk~GlT~~vi~ei~~aL~~~EL-----IKV--kvl~~~~~~~~e~a~~la~~t 70 (98)
T 1jo0_A 16 HHLNPVVMLGGNGLTEGVLAEIENALNHHEL-----IKV--KVAGADRETKQLIINAIVRET 70 (98)
T ss_dssp TTBCCSEEECTTCSCHHHHHHHHHHHHHHSE-----EEE--EETTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHCCe-----EEE--EEeCCCHHHHHHHHHHHHHHh
Confidence 446788999999874 6888888886431 333 325566677777788777765
No 64
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=31.89 E-value=12 Score=37.20 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=11.1
Q ss_pred CCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEEEecCCCcCHHHHHHHHHHHHHcChhHHHHHHHH
Q psy8115 118 PARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYNSDV 197 (218)
Q Consensus 118 ~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A~llAe~IA~QLEkRv~FRRAmK~A 197 (218)
|.-..+.|-..+-+.|||.+|+.|++|.+.---....++ -....|..++..+.--|......|-.....=......
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d----dG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~ 644 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND----DGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGK 644 (726)
T ss_dssp CC-----------------------------------------------CCSCHHHHHHHHHC-----------------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC----CceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEE
Confidence 556777788888899999999999998775433222211 0112456677777777767666666666666667777
Q ss_pred HHHHHHcCCccCCC
Q psy8115 198 SLYCLNCYTYADAP 211 (218)
Q Consensus 198 Ir~amkaGA~~~~~ 211 (218)
+..+++-||+++-.
T Consensus 645 V~~I~~fGaFVel~ 658 (726)
T 4aid_A 645 VVKVVDFGAFVNFF 658 (726)
T ss_dssp --------------
T ss_pred EEEEeccEEEEEEC
Confidence 88888999998754
No 65
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=28.95 E-value=1.4e+02 Score=20.49 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhh--hccCCeeeeEEEecCCeEEEEEEecccceEe-ccCcccHHHHHHHHHHHhCCCCCcEEEEEE
Q psy8115 92 FRAELDEFLTRE--LAEDGYSGVEIRFTPARTEIIIMATRTQNVL-GDKGRRIRELTSVVQKRFKFADGAIELYAE 164 (218)
Q Consensus 92 ir~~IRefl~K~--l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVI-GrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~ 164 (218)
...+|++.+... =.=.++-++.+.+....+-+.+|...|+.+- ...-+-.++++..|++.|+. -.+.|.++
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~--~~vtIh~e 84 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG--LQATIHVE 84 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT--EEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC--CEEEEEeC
Confidence 345677777543 1123466677777777788888887765431 22223457888888888863 25666665
No 66
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=27.99 E-value=80 Score=20.01 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHhCCCCCcEEEEEEEecC
Q psy8115 140 RIRELTSVVQKRFKFADGAIELYAEKVAT 168 (218)
Q Consensus 140 ~Ik~L~~~LqK~~~~~~kkI~I~I~EV~n 168 (218)
-+++|.+.|.+.++.....|.|.+.++..
T Consensus 20 l~~~lt~~l~~~lg~~~~~v~V~i~e~~~ 48 (64)
T 3abf_A 20 LVRRLTEMASRLLGEPYEEVRVILYEVRR 48 (64)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEEECG
T ss_pred HHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 36889999999999887889999998874
No 67
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=27.90 E-value=40 Score=22.01 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHhCCCCCcEEEEEEEecC
Q psy8115 138 GRRIRELTSVVQKRFKFADGAIELYAEKVAT 168 (218)
Q Consensus 138 G~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~n 168 (218)
.+-++.|.+.+.+.++.....|.|.+.|+..
T Consensus 16 ~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~ 46 (62)
T 3m20_A 16 REFVERLTSVAAEIYGMDRSAITILIHEPPA 46 (62)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCEEEEECCCG
T ss_pred HHHHHHHHHHHHHHhCcCcceEEEEEEEeCH
Confidence 3346889999999999887889999988853
No 68
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=27.81 E-value=45 Score=29.08 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=37.7
Q ss_pred HHHHHHhhhccCCeeeeEEEe-cCCeEEEEEEecccceEeccCcccHHHHH
Q psy8115 96 LDEFLTRELAEDGYSGVEIRF-TPARTEIIIMATRTQNVLGDKGRRIRELT 145 (218)
Q Consensus 96 IRefl~K~l~~AGIs~IEI~R-t~~~I~IiI~aarPgiVIGrkG~~Ik~L~ 145 (218)
..+|+.+.|.-|.+..|.|.- ......|.+--..-+.-||++|++++.-.
T Consensus 160 p~~fi~nalsPA~V~~V~i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~ 210 (251)
T 2asb_A 160 PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAA 210 (251)
T ss_dssp HHHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHH
T ss_pred HHHHHHhccCCcceEEEEEEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHH
Confidence 457888889999999998743 34466666666667789999999985443
No 69
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=27.71 E-value=85 Score=23.69 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=36.0
Q ss_pred EecccceEeccCccc---HHHHHHHHHHHhCCCCCcEEEEEEEecCCCcCHHHHHHHHHHHHH
Q psy8115 126 MATRTQNVLGDKGRR---IRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLI 185 (218)
Q Consensus 126 ~aarPgiVIGrkG~~---Ik~L~~~LqK~~~~~~kkI~I~I~EV~nP~l~A~llAe~IA~QLE 185 (218)
+.-+|-+.||++|-. ++++.+.|++.= =|.|.+ ..+...+..-+|+.|+.+..
T Consensus 15 h~Lkpvv~IGK~GlTe~vi~ei~~aL~~hE-----LIKVkv--l~~~~~d~~e~a~~la~~t~ 70 (104)
T 1rq8_A 15 HNIDPIFQIGKGGINENMIKQIDDTLENRE-----LIKVHV--LQNNFDDKKELAETLSEATR 70 (104)
T ss_dssp TSSCCSCEECSSSCCHHHHHHHHHHHHHSS-----EEEEEE--CCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHCC-----cEEEEE--eCCCHHHHHHHHHHHHHHhC
Confidence 446788999999874 688888887632 233333 55666777778888877653
No 70
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=27.59 E-value=8.5 Score=35.43 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=26.7
Q ss_pred eEEEecCCeEEEEEEecccceEeccCc--ccHHHHHHHHHHHhCC
Q psy8115 112 VEIRFTPARTEIIIMATRTQNVLGDKG--RRIRELTSVVQKRFKF 154 (218)
Q Consensus 112 IEI~Rt~~~I~IiI~aarPgiVIGrkG--~~Ik~L~~~LqK~~~~ 154 (218)
+|++++.-.+++.|-...-..|||++| .+|++|++.-.-...+
T Consensus 23 le~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~f 67 (376)
T 3n89_A 23 IEINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQL 67 (376)
T ss_dssp CCCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEEC
T ss_pred EEecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEEC
Confidence 344433333444444444567999999 9999999866544333
No 71
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=26.87 E-value=59 Score=24.18 Aligned_cols=51 Identities=8% Similarity=0.022 Sum_probs=34.1
Q ss_pred ecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEEEecC
Q psy8115 116 FTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVAT 168 (218)
Q Consensus 116 Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~n 168 (218)
|+...+.|.|. .+|.=...|.+-++.|.+.|.+.++.....+.|.+.|+..
T Consensus 62 ~~~~~~~I~i~--~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~~~ 112 (131)
T 2aal_A 62 RSSAVVLLTVI--SRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVENSD 112 (131)
T ss_dssp CCTTCEEEEEE--ESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCG
T ss_pred CCCCeEEEEEE--eCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCH
Confidence 44455566655 3332112233346889999999999888889999999874
No 72
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=26.05 E-value=62 Score=27.87 Aligned_cols=109 Identities=10% Similarity=0.032 Sum_probs=59.4
Q ss_pred eeecccccchhhHHHHhhhhhcccccchhhhhhHHh---hhhHHHHHHHHHHhhhccCCeeeeEEEecCCeEEEEEEecc
Q psy8115 53 TVRDSPLGFSVLFRVLVNTIGVSNSLSICVSLQFVA---DGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATR 129 (218)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~ykkfV~---d~iir~~IRefl~K~l~~AGIs~IEI~Rt~~~I~IiI~aar 129 (218)
..-|...|+...+-.+...|.. .+ .....++. ++....+|++.+.+.=.=.++.++.+.+....+-+.+|..-
T Consensus 178 ~~~Dpi~ai~Ia~~I~~~~~~l--~~--~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~G~~~~v~~hi~v 253 (306)
T 3j1z_P 178 WWADGLFAVLIACYIGQQAFDL--GY--RSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLEL 253 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH--HH--HHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEETTEEEEEECCEE
T ss_pred chhhhHHHHHHHHHHHHHHHHH--HH--HHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEECCcEEEEEEEEE
Confidence 3456555555555444444421 11 12222332 34445567776654322234566777777777778888766
Q ss_pred cceE-eccCcccHHHHHHHHHHHhCCCCCcEEEEEEEec
Q psy8115 130 TQNV-LGDKGRRIRELTSVVQKRFKFADGAIELYAEKVA 167 (218)
Q Consensus 130 PgiV-IGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~ 167 (218)
|+.+ +.+--.-.+++++.|++.|+. ..+.|.++++.
T Consensus 254 ~~~~sl~eah~i~~~ie~~l~~~~~~--~~v~IhveP~~ 290 (306)
T 3j1z_P 254 DGNLSLNEAHSITDTTGLRVKAAFED--AEVIIHQDPVQ 290 (306)
T ss_dssp CTTSBHHHHHHHHHHHHHHHHHHSTT--CEEEECCEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCC--CeEEEEeCCCC
Confidence 5432 111112247788888888863 46778777653
No 73
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=25.46 E-value=26 Score=34.69 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=5.7
Q ss_pred HHHHHHHhhhccCCeeeeEEEe-cCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCC-CCcEEEEEEEecCCCcC
Q psy8115 95 ELDEFLTRELAEDGYSGVEIRF-TPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFA-DGAIELYAEKVATRGLC 172 (218)
Q Consensus 95 ~IRefl~K~l~~AGIs~IEI~R-t~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~-~kkI~I~I~EV~nP~l~ 172 (218)
.|.+.+.+.+.+. +-++.- .|.-..+.|-..+-+.+||.+|+.|+++.+.+.-....+ +..+.| ..++..
T Consensus 538 ~I~~~m~~al~~~---~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I-----~~~~~~ 609 (723)
T 3cdi_A 538 HILGVMEQAINAP---RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI-----AATDGE 609 (723)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhc---chhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecCCccEEE-----ecCCHH
Confidence 4555555544332 112222 255666677778888999999999988877654322222 122222 222222
Q ss_pred HHHHHHHHHHHHHcChhHHHHHHHHHHHHHHcCCccCCC
Q psy8115 173 AIAQAESLRYKLIGGLAVRRYNSDVSLYCLNCYTYADAP 211 (218)
Q Consensus 173 A~llAe~IA~QLEkRv~FRRAmK~AIr~amkaGA~~~~~ 211 (218)
+.--|.....++-.....=......+.++++-||+++-.
T Consensus 610 ~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~ 648 (723)
T 3cdi_A 610 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG 648 (723)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeC
Confidence 222222222222222233334455666778889988764
No 74
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=25.07 E-value=50 Score=29.90 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=39.6
Q ss_pred HHHHHHHhhhccCCeeeeEEE-ecCCeEEEEEEecccceEeccCcccHHHHH
Q psy8115 95 ELDEFLTRELAEDGYSGVEIR-FTPARTEIIIMATRTQNVLGDKGRRIRELT 145 (218)
Q Consensus 95 ~IRefl~K~l~~AGIs~IEI~-Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~ 145 (218)
...+|+.+.|.-|-+.+|.|. -......|.+.-..-+.-||++|++++.-.
T Consensus 278 d~~~fi~nal~Pa~v~~v~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~ 329 (344)
T 1hh2_P 278 DPKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAA 329 (344)
T ss_dssp SHHHHHHHHTCSSCCSEEEEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHH
T ss_pred CHHHHHHHhcCccEEEEEEEEcCCCCEEEEEEChHHcchhhcCCCccHHHHH
Confidence 456788899999999999883 334567777777777889999999985433
No 75
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.48 E-value=1.4e+02 Score=22.09 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=34.7
Q ss_pred hhhccCCeeeeEEEecCC-----eEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEE
Q psy8115 102 RELAEDGYSGVEIRFTPA-----RTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIEL 161 (218)
Q Consensus 102 K~l~~AGIs~IEI~Rt~~-----~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I 161 (218)
++|.+.|++-+.|..... .+.|.+. ....+.+|++.|+..++.+..+..+
T Consensus 8 ~~f~~tg~ati~V~~~~~~~~~~~~~lev~----------~~~TV~~lK~kI~~k~gip~~qQrL 62 (100)
T 1wju_A 8 DNYRTTGIATIEVFLPPRLKKDRKNLLETR----------LHITGRELRSKIAETFGLQENYIKI 62 (100)
T ss_dssp CSSSCCCEEEEEEECCTTTCCSSSEEEEEE----------SSSBHHHHHHHHHHHTTCCSTTCEE
T ss_pred hhhhhcceEEEEEEecCCCCCCcEEEEEeC----------CcCHHHHHHHHHHHHHCcCHHHeEE
Confidence 578889999999965431 3444432 2467899999999999986444333
No 76
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=24.37 E-value=70 Score=21.00 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHhCCCCCcEEEEEEEecCC
Q psy8115 140 RIRELTSVVQKRFKFADGAIELYAEKVATR 169 (218)
Q Consensus 140 ~Ik~L~~~LqK~~~~~~kkI~I~I~EV~nP 169 (218)
-++.|.+.+.+.++.....+.|.+.|+..-
T Consensus 22 l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~ 51 (67)
T 3m21_A 22 LIEGVSDLMVKVLNKNKASIVVIIDEVDSN 51 (67)
T ss_dssp HHHHHHHHHHHHHCCCGGGCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHCcCcccEEEEEEEeCHH
Confidence 368888999999998777899999998643
No 77
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=23.31 E-value=88 Score=24.89 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=35.4
Q ss_pred EecCCeEEEEE-EecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEEEecC
Q psy8115 115 RFTPARTEIII-MATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVAT 168 (218)
Q Consensus 115 ~Rt~~~I~IiI-~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~EV~n 168 (218)
+|..+.+.|.| ++++.|.=...|.+-.+.|.+.|+..++.....|.|++.|...
T Consensus 77 ~~~~~~v~I~I~~~a~~gRt~eqK~~l~~~l~~~L~~~~gi~~~dv~I~I~E~~~ 131 (161)
T 3c6v_A 77 EQHPNFVALTIYHLARTMTSDEQRQGFLKRIDAFLTPMFEPKGIDWEYFVTEAPR 131 (161)
T ss_dssp EECSSEEEEEEEEETTSCCSHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEEECG
T ss_pred cccCCEEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEEcCc
Confidence 45666777776 2234333223333446888888888888877789999988754
No 78
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=22.82 E-value=94 Score=19.44 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEEEEecC
Q psy8115 141 IRELTSVVQKRFKFADGAIELYAEKVAT 168 (218)
Q Consensus 141 Ik~L~~~LqK~~~~~~kkI~I~I~EV~n 168 (218)
.+.|.+.|.+.++.....+.|.+.++..
T Consensus 20 ~~~i~~~l~~~lg~~~~~v~V~i~e~~~ 47 (61)
T 2opa_A 20 VEKVTEAVKETTGASEEKIVVFIEEMRK 47 (61)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEEEECG
T ss_pred HHHHHHHHHHHhCcCcCeEEEEEEEcCH
Confidence 5888889999999877889999998864
No 79
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=22.32 E-value=1.7e+02 Score=23.71 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=37.6
Q ss_pred hhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEE
Q psy8115 103 ELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAE 164 (218)
Q Consensus 103 ~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~ 164 (218)
.+.+.||.= .++.++|-+.+|.+ +..+.++++.|.+.++....+|+|+++
T Consensus 83 ~~~~~G~~i-------~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKAt 132 (152)
T 1iv3_A 83 LVEARGAKL-------LQASLVLTLDRPKL-----GPHRKALVDSLSRLMRLPQDRIGLTFK 132 (152)
T ss_dssp HHHHTTCCE-------EEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred HHHHcCCEE-------EEEEEEEEecCCcC-----HHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 345566642 24566788888865 678899999999999987778888765
No 80
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.12 E-value=16 Score=26.90 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEEecccceEeccCcccHHHHHHH
Q psy8115 121 TEIIIMATRTQNVLGDKGRRIRELTSV 147 (218)
Q Consensus 121 I~IiI~aarPgiVIGrkG~~Ik~L~~~ 147 (218)
..+.|-..+-+.|||++|+.|++|.+.
T Consensus 19 ~~i~Ip~~~i~~iIG~gGk~Ir~I~ee 45 (95)
T 2ctj_A 19 VEVSIPAKLHNSLIGTKGRLIRSIMEE 45 (95)
T ss_dssp EEEECCHHHHHHHHCSSSHHHHHHHHH
T ss_pred EEEEECHHHHhhhCCCCchhHHHHHHH
Confidence 344455566678999999999887764
No 81
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=21.27 E-value=1.1e+02 Score=19.20 Aligned_cols=28 Identities=7% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEEEEecC
Q psy8115 141 IRELTSVVQKRFKFADGAIELYAEKVAT 168 (218)
Q Consensus 141 Ik~L~~~LqK~~~~~~kkI~I~I~EV~n 168 (218)
.+.|.+.|.+.++.....+.|.+.|+..
T Consensus 20 ~~~i~~~l~~~lg~p~~~v~v~i~e~~~ 47 (62)
T 1otf_A 20 IRQVSEAMANSLDAPLERVRVLITEMPK 47 (62)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEEEECG
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEeCH
Confidence 5888888999999887889999998864
No 82
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=20.83 E-value=1.9e+02 Score=23.64 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=37.5
Q ss_pred hhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEE
Q psy8115 103 ELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAE 164 (218)
Q Consensus 103 ~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~ 164 (218)
.+.+.||.= .++.++|-+.+|.+ +..+.++++.|.+.++....+|+|+++
T Consensus 86 ~v~~~G~~i-------~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKAt 135 (160)
T 2pmp_A 86 LMDEAGYEI-------GNLDATLILQRPKI-----SPHKETIRSNLSKLLGADPSVVNLKAK 135 (160)
T ss_dssp HHHHHTEEE-------EEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred HHHHcCCEE-------EEEEEEEEecCCcC-----HHHHHHHHHHHHHHHCCCcceEEEEEe
Confidence 344566642 24566788889865 678899999999999987678888765
No 83
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=20.81 E-value=1.9e+02 Score=23.60 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=38.1
Q ss_pred hhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEE
Q psy8115 103 ELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAE 164 (218)
Q Consensus 103 ~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~ 164 (218)
.+.+.||.= .++.++|-+.+|.+ +.-+.++++.|.+.++....+|+|+++
T Consensus 85 ~v~~~G~~i-------~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKAt 134 (159)
T 1t0a_A 85 LAKAKGFEL-------GNLDVTIIAQAPKM-----APHIEDMRQVLAADLNADVADINVKAT 134 (159)
T ss_dssp HHHHTTEEE-------EEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHcCCEE-------EEEEEEEEcCCCcC-----hHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 445677642 24566788899966 678899999999999987778888765
No 84
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=20.46 E-value=87 Score=20.85 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHhCCCCCcEEEEEEEecC
Q psy8115 140 RIRELTSVVQKRFKFADGAIELYAEKVAT 168 (218)
Q Consensus 140 ~Ik~L~~~LqK~~~~~~kkI~I~I~EV~n 168 (218)
-++.|.+.+.+.++.....+.|.+.|+..
T Consensus 20 L~~~it~~l~~~lg~p~~~v~V~i~e~~~ 48 (72)
T 3mb2_A 20 LARALSAAAAAAFDVPLAEVRLIIQEVPP 48 (72)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEEEECG
T ss_pred HHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 35888888999999877889999999864
No 85
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.44 E-value=96 Score=20.08 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHhCCCCCcEEEEEEEecC
Q psy8115 140 RIRELTSVVQKRFKFADGAIELYAEKVAT 168 (218)
Q Consensus 140 ~Ik~L~~~LqK~~~~~~kkI~I~I~EV~n 168 (218)
-++.|.+.+.+.++.....+.|.+.|+..
T Consensus 19 L~~~it~~~~~~lg~p~~~v~V~i~e~~~ 47 (65)
T 3ry0_A 19 LGEALTAAAHETLGTPVEAVRVIVEETPP 47 (65)
T ss_dssp HHHHHHHHHHHHHCCCGGGCEEEEEEECG
T ss_pred HHHHHHHHHHHHhCcCcccEEEEEEEcCH
Confidence 35888888888999877789999999864
No 86
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=20.30 E-value=1.9e+02 Score=23.52 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=37.7
Q ss_pred hhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEE
Q psy8115 103 ELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAE 164 (218)
Q Consensus 103 ~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~ 164 (218)
.+.+.||.= .++.++|-+.+|.+ +.-+.++++.|.+.++....+|+|+++
T Consensus 84 ~v~~~G~~i-------~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKAt 133 (160)
T 1gx1_A 84 RIQAKGYTL-------GNVDVTIIAQAPKM-----LPHIPQMRVFIAEDLGCHMDDVNVKAT 133 (160)
T ss_dssp HHHHTTCEE-------EEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHcCCEE-------EEEEEEEEcCCCcc-----hHHHHHHHHHHHHHhCCCCceEEEEEc
Confidence 445567642 24566788899966 678899999999999987678888765
No 87
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=20.14 E-value=74 Score=29.14 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHhhhccCCeeeeEEEe-cCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEE
Q psy8115 96 LDEFLTRELAEDGYSGVEIRF-TPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY 162 (218)
Q Consensus 96 IRefl~K~l~~AGIs~IEI~R-t~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~ 162 (218)
..+|+.+.|.-|.+.+|.+.- ......|.+--..-+..||++|++++.... +.+ .+|.|.
T Consensus 283 p~~fi~nalsPA~V~~V~~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~----Ltg---~~idI~ 343 (366)
T 1k0r_A 283 PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAAR----LTG---WRIDIR 343 (366)
T ss_dssp HHHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHH----HHC---CEEEEE
T ss_pred HHHHHHHhcCCcceeEEEEEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHH----HHC---Ceeeee
Confidence 567888889999999995442 234566666666667899999988854433 333 566663
No 88
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=20.04 E-value=1.9e+02 Score=23.59 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=37.6
Q ss_pred hhccCCeeeeEEEecCCeEEEEEEecccceEeccCcccHHHHHHHHHHHhCCCCCcEEEEEE
Q psy8115 103 ELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAE 164 (218)
Q Consensus 103 ~l~~AGIs~IEI~Rt~~~I~IiI~aarPgiVIGrkG~~Ik~L~~~LqK~~~~~~kkI~I~I~ 164 (218)
.+.+.||.= .++.++|-+.+|.+ +.-+.++++.|.+.++....+|+|+++
T Consensus 89 ~v~~~G~~i-------~NvD~tii~q~PKl-----~p~~~~m~~~la~~L~~~~~~V~vKAt 138 (162)
T 3re3_A 89 MLDKKQYSI-------SNIDCTIIAQAPKM-----LPHIEKMRACLANILEIQISQINIKAT 138 (162)
T ss_dssp HHHHTTCEE-------EEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred HHHHcCCEE-------EEEEEEEEcCCCcc-----hhHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 455567642 24566788888865 667899999999999987778888765
Done!