RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8115
         (218 letters)



>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 92

 Score =  128 bits (324), Expect = 2e-39
 Identities = 66/87 (75%), Positives = 76/87 (87%)

Query: 89  DGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVV 148
              F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIRELT+VV
Sbjct: 5   SSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVV 64

Query: 149 QKRFKFADGAIELYAEKVATRGLCAIA 175
           QKRF F +G++ELYAEKVATRG    +
Sbjct: 65  QKRFGFPEGSVELYAEKVATRGSGPSS 91


>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 105

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 98  EFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 153
             L +EL   G + V+I        + +   +   V+G  G RIR L   + K   
Sbjct: 40  GLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG 95


>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 105

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 98  EFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 153
           ++LT+ELA+   S + I        + I   R   V+G KG  + +L  VV     
Sbjct: 40  QYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 95


>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 250

 Score = 31.3 bits (70), Expect = 0.068
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 74  VSNSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIR 115
           VS SLS      + AD V       FL   LA  G   VE+R
Sbjct: 4   VSISLS-----SYGADLVRSRGQASFL-PLLAMAGAQRVELR 39


>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 628

 Score = 28.0 bits (62), Expect = 1.1
 Identities = 12/54 (22%), Positives = 20/54 (37%)

Query: 65  FRVLVNTIGVSNSLSICVSLQFVADGVFRAELDEFLTRELAEDGYSGVEIRFTP 118
           F +  N  G S    I +    +  G F  E+ + +  +L    Y   E R + 
Sbjct: 252 FNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISI 305


>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
           protein {Human parvovirus B19 [TaxId: 10798]}
          Length = 536

 Score = 27.6 bits (61), Expect = 1.2
 Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 4   LWKMETTRSGQHANKGQEWPISTRYITTPWRPGPGVPTTPLTQTISNGAT 53
           L   +T               + +     + PGP V     + +   G +
Sbjct: 243 LGVPDTLGGDPKFRSLTHEDHAIQP--QNFMPGPLVN----SVSTKEGDS 286


>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage
           K1F [TaxId: 344021]}
          Length = 516

 Score = 27.7 bits (61), Expect = 1.3
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 17  NKGQEWPISTRYITTPWRPGPGVPTTPLTQTISNGATVRDSPLGFSV 63
           N G+ W + T +  +PWR    +   P    + + AT+ ++  GF++
Sbjct: 252 NAGKNWHMGTSFHKSPWRK-TDLGLIPSVTEVHSFATIDNN--GFAM 295


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 773,249
Number of extensions: 33931
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 12
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)