BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8116
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 196/373 (52%), Gaps = 32/373 (8%)
Query: 28 TVIPRKGGGYRSLPTKVLPR-SCAFIYGRDGNLEKFTREMQDRLVRNVIEPMACDGLRTI 86
T PR + P ++L R S I+G++ L++ E++D +N + G R +
Sbjct: 473 TAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDE---ELKDAF-QNAYLELGGLGERVL 528
Query: 87 SIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQR 146
+ F+P + DT DD + ++NL + ++ + DP R VPDA+ KC+
Sbjct: 529 GFCHL-FLPDEQFPEGFQFDT----DDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRS 583
Query: 147 AGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRV-----RDANG------ 195
AGI V MVTGD+ TA++IA GI+ G++ + N V RDA
Sbjct: 584 AGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 643
Query: 196 ---DVQQHLLDKV--WPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGP 250
D+ LD + + V AR+SP K +V+G +VAVTGDG ND P
Sbjct: 644 DLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEG-----CQRQGAIVAVTGDGVNDSP 698
Query: 251 ALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVN 310
A KKAD+G AMGIAG+DV+K+A+D+IL DDNF+SIV V GR ++D++ K + + LT N
Sbjct: 699 ASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSN 758
Query: 311 VVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYG-RTKP 369
+ + I A PL V +L ++L D + +++LA E D++ R+P +T
Sbjct: 759 IPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDK 818
Query: 370 LISKTMMKNILGQ 382
L+++ ++ GQ
Sbjct: 819 LVNEQLISMAYGQ 831
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 196/373 (52%), Gaps = 32/373 (8%)
Query: 28 TVIPRKGGGYRSLPTKVLPR-SCAFIYGRDGNLEKFTREMQDRLVRNVIEPMACDGLRTI 86
T PR + P ++L R S I+G++ L++ E++D +N + G R +
Sbjct: 467 TAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDE---ELKDAF-QNAYLELGGLGERVL 522
Query: 87 SIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQR 146
+ F+P + DT DD + ++NL + ++ + DP R VPDA+ KC+
Sbjct: 523 GFCHL-FLPDEQFPEGFQFDT----DDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRS 577
Query: 147 AGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRV-----RDANG------ 195
AGI V MVTGD+ TA++IA GI+ G++ + N V RDA
Sbjct: 578 AGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 637
Query: 196 ---DVQQHLLDKV--WPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGP 250
D+ LD + + V AR+SP K +V+G +VAVTGDG ND P
Sbjct: 638 DLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEG-----CQRQGAIVAVTGDGVNDSP 692
Query: 251 ALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVN 310
A KKAD+G AMGIAG+DV+K+A+D+IL DDNF+SIV V GR ++D++ K + + LT N
Sbjct: 693 ASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSN 752
Query: 311 VVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYG-RTKP 369
+ + I A PL V +L ++L D + +++LA E D++ R+P +T
Sbjct: 753 IPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDK 812
Query: 370 LISKTMMKNILGQ 382
L+++ ++ GQ
Sbjct: 813 LVNEQLISMAYGQ 825
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 164/294 (55%), Gaps = 22/294 (7%)
Query: 81 DGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDA 140
D LR +++A RD P + E+ +D + + E +LT + VVG+ DP R EV +
Sbjct: 556 DTLRCLALATRDTPPKREEM---VLDDSTKFMEYE---TDLTFVGVVGMLDPPRKEVMGS 609
Query: 141 IRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFL--ILEGKEFNRRVRDANGDVQ 198
I+ C+ AGI V M+TGDN TA +I + GI +D G+EF+ D+
Sbjct: 610 IQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADRAYTGREFD--------DLP 661
Query: 199 QHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVG 258
+ R AR PT K +V+ + E+ A+TGDG ND PALKKA++G
Sbjct: 662 LAEQREACRRACCFARVEPTHKSKIVE-----YLQSFDEITAMTGDGVNDAPALKKAEIG 716
Query: 259 FAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAF 318
AMG +GT VAK AS+++L DDNFS+IV AV GR +Y+++ +F+++ ++ NV V+ F
Sbjct: 717 IAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIF 775
Query: 319 IGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLIS 372
+ A L VQ+LWVNL+ D L + AL P D++ R P +PLIS
Sbjct: 776 LTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPKEPLIS 829
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 164/294 (55%), Gaps = 22/294 (7%)
Query: 81 DGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDA 140
D LR +++A RD P + E+ +D + + E +LT + VVG+ DP R EV +
Sbjct: 557 DTLRCLALATRDTPPKREEM---VLDDSSRFMEYE---TDLTFVGVVGMLDPPRKEVMGS 610
Query: 141 IRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFL--ILEGKEFNRRVRDANGDVQ 198
I+ C+ AGI V M+TGDN TA +I + GI ++ G+EF+ D+
Sbjct: 611 IQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFD--------DLP 662
Query: 199 QHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVG 258
+ R AR P+ K +V+ + E+ A+TGDG ND PALKKA++G
Sbjct: 663 LAEQREACRRACCFARVEPSHKSKIVE-----YLQSYDEITAMTGDGVNDAPALKKAEIG 717
Query: 259 FAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAF 318
AMG +GT VAK AS+++L DDNFS+IV AV GR +Y+++ +F+++ ++ NV V+ F
Sbjct: 718 IAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIF 776
Query: 319 IGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLIS 372
+ A L VQ+LWVNL+ D L + AL P D++ R P +PLIS
Sbjct: 777 LTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 164/294 (55%), Gaps = 22/294 (7%)
Query: 81 DGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDA 140
D LR +++A RD P + E+ +D + + E +LT + VVG+ DP R EV +
Sbjct: 558 DTLRCLALATRDTPPKREEM---VLDDSSRFMEYE---TDLTFVGVVGMLDPPRKEVMGS 611
Query: 141 IRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFL--ILEGKEFNRRVRDANGDVQ 198
I+ C+ AGI V M+TGDN TA +I + GI ++ G+EF+ D+
Sbjct: 612 IQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFD--------DLP 663
Query: 199 QHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVG 258
+ R AR P+ K +V+ + E+ A+TGDG ND PALKKA++G
Sbjct: 664 LAEQREACRRACCFARVEPSHKSKIVE-----YLQSYDEITAMTGDGVNDAPALKKAEIG 718
Query: 259 FAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAF 318
AMG +GT VAK AS+++L DDNFS+IV AV GR +Y+++ +F+++ ++ NV V+ F
Sbjct: 719 IAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIF 777
Query: 319 IGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLIS 372
+ A L VQ+LWVNL+ D L + AL P D++ R P +PLIS
Sbjct: 778 LTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 831
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 164/294 (55%), Gaps = 22/294 (7%)
Query: 81 DGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDA 140
D LR +++A RD P + E+ +D + + E +LT + VVG+ DP R EV +
Sbjct: 557 DTLRCLALATRDTPPKREEM---VLDDSSRFMEYE---TDLTFVGVVGMLDPPRKEVMGS 610
Query: 141 IRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFL--ILEGKEFNRRVRDANGDVQ 198
I+ C+ AGI V M+TGDN TA +I + GI ++ G+EF+ D+
Sbjct: 611 IQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFD--------DLP 662
Query: 199 QHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVG 258
+ R AR P+ K +V+ + E+ A+TGDG ND PALKKA++G
Sbjct: 663 LAEQREACRRACCFARVEPSHKSKIVE-----YLQSYDEITAMTGDGVNDAPALKKAEIG 717
Query: 259 FAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAF 318
AMG +GT VAK AS+++L DDNFS+IV AV GR +Y+++ +F+++ ++ NV V+ F
Sbjct: 718 IAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIF 776
Query: 319 IGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLIS 372
+ A L VQ+LWVNL+ D L + AL P D++ R P +PLIS
Sbjct: 777 LTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 161/284 (56%), Gaps = 31/284 (10%)
Query: 122 TGLCVVGIE---DPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDF 178
T LC VG+ DP R VPDA+ KC+ AGI V MVTGD+ TA++IA GI+ G++
Sbjct: 586 TDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNET 645
Query: 179 LILEGKEFNRRV-----RDANG---------DVQQHLLDKV--WPRLRVLARSSPTDKYT 222
+ N + RDA D+ +LD + + V AR+SP K
Sbjct: 646 IEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLI 705
Query: 223 LVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNF 282
+V+G +VAVTGDG ND PALKKAD+G AMGI+G+DV+K+A+D+IL DDNF
Sbjct: 706 IVEG-----CQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNF 760
Query: 283 SSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAV---IVAFIGACAVQDSPLKAVQMLWVNL 339
+SIV V GR ++D++ K + + LT N+ + +V IG + PL V +L ++L
Sbjct: 761 ASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPL---PLGTVTILCIDL 817
Query: 340 IMDTLASLALATEMPTPDLLLRKPYG-RTKPLISKTMMKNILGQ 382
D + +++LA E D++ R+P +T L+++ ++ GQ
Sbjct: 818 GTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQ 861
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/419 (31%), Positives = 196/419 (46%), Gaps = 61/419 (14%)
Query: 82 GLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAI 141
G + ++ +D+ PG A D E + + L+ +V + DP R VPDA+
Sbjct: 564 GFCQLYLSEKDYPPGYA------FDVEAM----NFPTSGLSFAGLVSMIDPPRATVPDAV 613
Query: 142 RKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDF-------LILEGKEFNRRVRDA- 193
KC+ AGI V MVTGD+ TA++IA GI+ G + L + + NR+ A
Sbjct: 614 LKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARAC 673
Query: 194 --NGDVQQHLLD--------KVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTG 243
NG +Q +D + P + V AR+SP K +V+ +VAVTG
Sbjct: 674 VING-MQLKDMDPSELVEALRTHPEM-VFARTSPQQKLVIVE-----SCQRLGAIVAVTG 726
Query: 244 DGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFL 303
DG ND PALKKAD+G AMGIAG+D AK A+D+IL DDNF+SIV V GR ++D++ K +
Sbjct: 727 DGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSI 786
Query: 304 QFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKP 363
+ LT N+ + I PL + +L++ L D S++LA E D++ +P
Sbjct: 787 AYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRP 846
Query: 364 YGRTK------PLISKTMMKNILGQAIYQLTVVFT---------LLFVG-------DKLL 401
+ PL + + + Q+ T FT LL VG L
Sbjct: 847 RNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENHHLQ 906
Query: 402 DIPTGRGAE--FGSEPTQHFTV--IFNTFVFMTLFNEINARKIHGQRNVFEGFFSNPIF 456
D+ G E FG Q +T +F + M ++ RK +GFF N I
Sbjct: 907 DLQDSYGQEWTFGQRLYQQYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRIL 965
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 148/305 (48%), Gaps = 42/305 (13%)
Query: 58 NLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPN--WDDEE 115
L K + ++ + V ++I+ A GLR++++A R VP K + P W+
Sbjct: 431 ELAKASNDLSKK-VLSIIDKYAERGLRSLAVA-RQVVPEKTK-------ESPGAPWE--- 478
Query: 116 YIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGI---L 172
GL + + DP R + + IR+ G+ V+M+TGD + + + G+ +
Sbjct: 479 -----FVGL--LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNM 531
Query: 173 KPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKV 232
P L +DAN + ++++ + A P KY +VK K+
Sbjct: 532 YPSSALLGTH--------KDAN--LASIPVEELIEKADGFAGVFPEHKYEIVK-----KL 576
Query: 233 SDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWG 292
+ + +V +TGDG ND PALKKAD+G A+ A TD A+ ASDI+LT+ S I+ AV+
Sbjct: 577 QERKHIVGMTGDGVNDAPALKKADIGIAVADA-TDAARGASDIVLTEPGLSVIISAVLTS 635
Query: 293 RNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMD-TLASLALAT 351
R ++ + + + +++ + ++ F+ + + A +L + ++ D T+ +++
Sbjct: 636 RAIFQRMKNYTIYAVSIT-IRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDR 694
Query: 352 EMPTP 356
P+P
Sbjct: 695 VKPSP 699
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 43/189 (22%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNR 188
+EDP++ P+ I + Q++GI + M+TGD+ TA ++A GI K
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKK--------------- 595
Query: 189 RVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTND 248
V+A P DK +V S++ D +VA+ GDG ND
Sbjct: 596 ----------------------VVAEIMPEDKSRIV-----SELKDKGLIVAMAGDGVND 628
Query: 249 GPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLT 308
PAL KAD+G AMG GTDVA E++ + L + I KA + +I + L F
Sbjct: 629 APALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFI 687
Query: 309 VNVVAVIVA 317
NV+ V +A
Sbjct: 688 YNVLGVPLA 696
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 44/189 (23%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ + D ++ A+++ +R GI V M+TGDN +A +I+
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS------------------- 491
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
R+ N D+ V+A P K VK + ++EVVA GDG
Sbjct: 492 -----RELNLDL-------------VIAEVLPHQKSEEVKKL------QAKEVVAFVGDG 527
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQF 305
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I + + +
Sbjct: 528 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFW 586
Query: 306 QLTVNVVAV 314
L NV+ +
Sbjct: 587 ALIYNVILI 595
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 44/189 (23%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ + D ++ A+++ +R GI V M+TGDN +A +I+
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS------------------- 569
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
R+ N D+ V+A P K VK + ++EVVA GDG
Sbjct: 570 -----RELNLDL-------------VIAEVLPHQKSEEVKKL------QAKEVVAFVGDG 605
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQF 305
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I + + +
Sbjct: 606 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFW 664
Query: 306 QLTVNVVAV 314
L NV+ +
Sbjct: 665 ALIYNVILI 673
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 80/181 (44%), Gaps = 44/181 (24%)
Query: 116 YIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPG 175
+I+ N V+ + D +RPE +AI K + GI M+TGDN A+ +A + G+
Sbjct: 128 FILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL---- 183
Query: 176 DDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDS 235
DD+ A P +K VK +
Sbjct: 184 DDYF---------------------------------AEVLPHEKAEKVKEV------QQ 204
Query: 236 REVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNV 295
+ V A+ GDG ND PAL +ADVG A+G AGTDVA E +DI+L ++ + V R
Sbjct: 205 KYVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKT 263
Query: 296 Y 296
Y
Sbjct: 264 Y 264
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 44/184 (23%)
Query: 116 YIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPG 175
+I+ N V+ + D +RPE +AI K + GI M+TGDN A+ +A + G+
Sbjct: 128 FILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL---- 183
Query: 176 DDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDS 235
DD+ A P +K VK +
Sbjct: 184 DDYF---------------------------------AEVLPHEKAEKVKEV------QQ 204
Query: 236 REVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNV 295
+ V A+ GDG ND PAL +ADVG A+G AGTDVA E +DI+L ++ + V R
Sbjct: 205 KYVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKT 263
Query: 296 YDSI 299
Y +
Sbjct: 264 YSKL 267
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 44/174 (25%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ + D ++ A+++ +R GI V M+TGDN +A +I+
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS------------------- 197
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
R+ N D+ V+A P K VK + ++EVVA GDG
Sbjct: 198 -----RELNLDL-------------VIAEVLPHQKSEEVKKL------QAKEVVAFVGDG 233
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 299
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I
Sbjct: 234 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 286
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 44/174 (25%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ + D ++ A+++ +R GI V M+TGDN +A +I+
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS------------------- 197
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
R+ N D+ V+A P K VK + ++EVVA GDG
Sbjct: 198 -----RELNLDL-------------VIAEVLPHQKSEEVKKL------QAKEVVAFVGDG 233
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 299
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I
Sbjct: 234 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 286
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 44/169 (26%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ + D ++ A+++ +R GI V +TGDN +A +I+
Sbjct: 137 IIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAIS------------------- 177
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
R+ N D+ V+A P K VK + ++EVVA GDG
Sbjct: 178 -----RELNLDL-------------VIAEVLPHQKSEEVKKL------QAKEVVAFVGDG 213
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRN 294
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R
Sbjct: 214 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRK 261
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 136/315 (43%), Gaps = 72/315 (22%)
Query: 65 EMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGL 124
E D+ +N + A G R++ +A + E +W+ L
Sbjct: 492 EEVDQAYKNKVAEFATRGFRSLGVARKR--------------GEGSWEI----------L 527
Query: 125 CVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILE-- 182
++ DP R + + + + G++++M+TGD + AR + + G+ G + E
Sbjct: 528 GIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL---GTNIYNAERL 584
Query: 183 ---------GKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVS 233
G E V A+G A P KY +V+ I+ +
Sbjct: 585 GLGGGGDMPGSEVYDFVEAADG----------------FAEVFPQHKYNVVE-ILQQR-- 625
Query: 234 DSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGR 293
+VA+TGDG ND P+LKKAD G A+ +D A+ A+DI+ +I+ A+ R
Sbjct: 626 --GYLVAMTGDGVNDAPSLKKADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALKTSR 682
Query: 294 NVYDSIAKFLQFQLTVNVVAVIVAFIGA-CAVQDSPLKAVQMLWVNLIMDTLASLALATE 352
++ + ++ +++ +++ I F+G A+ + L ++++ + D +A+LA+A +
Sbjct: 683 QIFHRMYAYVVYRIALSIHLEI--FLGLWIAILNRSLNIELVVFIAIFAD-VATLAIAYD 739
Query: 353 MPTPDLLLRKPYGRT 367
PY +T
Sbjct: 740 --------NAPYSQT 746
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 52/150 (34%)
Query: 140 AIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRDANGDVQQ 199
A+++ +R GI V +TGDN +A +I+ R+ N D+
Sbjct: 30 AVQELKRXGIKVGXITGDNWRSAEAIS------------------------RELNLDL-- 63
Query: 200 HLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGF 259
V+A P K VK + ++EVVA GDG ND PAL +AD+G
Sbjct: 64 -----------VIAEVLPHQKSEEVKKL------QAKEVVAFVGDGINDAPALAQADLGI 106
Query: 260 AMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
A+G + DI+L D+ +V A+
Sbjct: 107 AVG---------SGDIVLIRDDLRDVVAAI 127
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 235 SREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDD 280
+RE V GDG ND +K A +G AMG A V K A I LT+D
Sbjct: 212 TREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTND 257
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 45/180 (25%)
Query: 107 TEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIA 166
E N D YI N + I D RP + D + K + G+ + +++GD + + ++
Sbjct: 113 AENNNDIAVYI--NGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS 170
Query: 167 TKCGILKPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKG 226
KE N +Q++ + L SP DK +++
Sbjct: 171 -----------------KELN---------IQEY-----YSNL------SPEDKVRIIE- 192
Query: 227 IIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIV 286
K+ + V + GDG ND AL ADV AMG G D++K +DIIL ++ +++
Sbjct: 193 ----KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIGTLL 247
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 45/180 (25%)
Query: 107 TEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIA 166
E N D YI N + I D RP + D + K + G+ + +++GD + + ++
Sbjct: 113 AENNNDIAVYI--NGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS 170
Query: 167 TKCGILKPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKG 226
KE N +Q++ + L SP DK +++
Sbjct: 171 -----------------KELN---------IQEY-----YSNL------SPEDKVRIIE- 192
Query: 227 IIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIV 286
K+ + V + GDG ND AL ADV AMG G D++K +DIIL ++ +++
Sbjct: 193 ----KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIGTLL 247
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 45/180 (25%)
Query: 107 TEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIA 166
E N D YI N + I D RP + D + K + G+ + +++GD + + ++
Sbjct: 113 AENNNDIAVYI--NGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS 170
Query: 167 TKCGILKPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKG 226
KE N +Q++ + L SP DK +++
Sbjct: 171 -----------------KELN---------IQEY-----YSNL------SPEDKVRIIE- 192
Query: 227 IIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIV 286
K+ + V + GDG ND AL ADV AMG G D++K +DIIL ++ +++
Sbjct: 193 ----KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIGTLL 247
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%)
Query: 231 KVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDD 280
+ +RE V GDG ND +K A G A G A V K A I LT+D
Sbjct: 208 NIGXTREEVIAIGDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYITLTND 257
>pdb|2KNE|B Chain B, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
Length = 28
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 548 RAGQILWIRGLTRLQTQV 565
R GQILW RGL R+QTQ+
Sbjct: 2 RRGQILWFRGLNRIQTQI 19
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 239 VAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
+ GDG ND P LK A +G AMG A V A + T DN S + KA+
Sbjct: 213 IMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDN-SGLYKAL 262
>pdb|1CFF|B Chain B, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
Length = 20
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 548 RAGQILWIRGLTRLQTQV 565
R GQILW RGL R+QTQ+
Sbjct: 2 RRGQILWFRGLNRIQTQI 19
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 243 GDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
GDG ND L+ A +G AMG A DV K A+D + + I KA+
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDEDGISKAM 255
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 243 GDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
GDG ND L+ A +G AMG A DV K A+D + + I KA+
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDEDGISKAM 255
>pdb|1RLO|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|C Chain C, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|D Chain D, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
Length = 271
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 236 REVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
+ VVA+ GD ND LK A FAMG A ++ + A TDDN
Sbjct: 208 QNVVAI-GDSGNDAEMLKMARYSFAMGNAAENIKQIAR--YATDDN 250
>pdb|1RLM|A Chain A, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|B Chain B, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|C Chain C, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|D Chain D, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLT|A Chain A, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|B Chain B, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|C Chain C, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|D Chain D, Transition State Analogue Of Ybiv From E. Coli K12
Length = 271
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 236 REVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
+ VVA+ GD ND LK A FAMG A ++ + A TDDN
Sbjct: 208 QNVVAI-GDSGNDAEMLKMARYSFAMGNAAENIKQIAR--YATDDN 250
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDD 280
E A GD ND L+ A G A G A D+ A + LT+D
Sbjct: 233 EETAAVGDSLNDKSXLEAAGKGVAXGNAREDIKSIADAVTLTND 276
>pdb|2OX7|A Chain A, Crystal Structure Of Protein Ef1440 From Enterococcus
Faecalis
pdb|2OX7|B Chain B, Crystal Structure Of Protein Ef1440 From Enterococcus
Faecalis
pdb|2OX7|C Chain C, Crystal Structure Of Protein Ef1440 From Enterococcus
Faecalis
pdb|2OX7|D Chain D, Crystal Structure Of Protein Ef1440 From Enterococcus
Faecalis
Length = 155
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 95 PGKAEINQVHIDTEPNWDDEEYIVNNLTGL 124
PG +EI DT NWD+ Y++ TGL
Sbjct: 44 PGTSEIEIGSYDTTFNWDEFPYVIXQSTGL 73
>pdb|3ODN|A Chain A, The Crystal Structure Of Drosophila Dally-Like Protein
Core Domain
Length = 506
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 365 GRTKPLISKTMMKNILGQAIYQLTVVFTLLFVGDKLLDIPTGRGAEFGSEPTQHFTVIF- 423
G TK IS+ M ILG + +FT L + +F S + + VI+
Sbjct: 64 GHTKDQISR--MSGILGSKATKFKDIFTALLKESR---------TQFNSMFIRTYGVIYE 112
Query: 424 -NTFVFMTLFNEINARKIHGQRNVFEGF--FSNPIFYSIWFITAASQVFIIQFGR 475
N++VF LF E+ +G+ ++ E F N ++ ++ + F + R
Sbjct: 113 RNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMR 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,616,773
Number of Sequences: 62578
Number of extensions: 742743
Number of successful extensions: 1578
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1513
Number of HSP's gapped (non-prelim): 52
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)