RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8116
(591 letters)
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 636 bits (1643), Expect = 0.0
Identities = 260/499 (52%), Positives = 328/499 (65%), Gaps = 35/499 (7%)
Query: 16 FQLSAARALMKVTVIPRKGGGYRSL---PTKVLPRSCAFIYGRDGNLEKFTREMQDRLVR 72
+ ++ R M V V+ GG YR ++++ + C +G + + +DR
Sbjct: 478 YPFNSERKFMSV-VVKHSGGKYREFRKGASEIVLKPCRKRLDSNGEATPISDDDKDR-CA 535
Query: 73 NVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDP 132
+VIEP+A D LRTI +AYRDF P + P D LT + VVGI+DP
Sbjct: 536 DVIEPLASDALRTICLAYRDFAPEE----------FPRKDYPN---KGLTLIGVVGIKDP 582
Query: 133 VRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRD 192
+RP V +A+++CQRAGITVRMVTGDNI+TA++IA CGIL G L +EGKEF V
Sbjct: 583 LRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFG--GLAMEGKEFRSLV-- 638
Query: 193 ANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPAL 252
+D + P+LRVLARSSP DK LV + D EVVAVTGDGTND PAL
Sbjct: 639 ------YEEMDPILPKLRVLARSSPLDKQLLVLM-----LKDMGEVVAVTGDGTNDAPAL 687
Query: 253 KKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVV 312
K ADVGF+MGI+GT+VAKEASDIIL DDNF+SIV+AV WGRNVYD+I KFLQFQLTVNVV
Sbjct: 688 KLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVV 747
Query: 313 AVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLIS 372
AVI+ F+G+C SPL AVQ+LWVNLIMDTLA+LALATE PT LL RKP GR PLIS
Sbjct: 748 AVILTFVGSCISSTSPLTAVQLLWVNLIMDTLAALALATEPPTEALLDRKPIGRNAPLIS 807
Query: 373 KTMMKNILGQAIYQLTVVFTLLFVGDKLLDIPTGRGAEFGSEPTQHFTVIFNTFVFMTLF 432
++M KNILGQA YQL V F LLF G + D+ + T++FNTFV + LF
Sbjct: 808 RSMWKNILGQAGYQLVVTFILLFAGGSIFDVSGPDEITSHQ-QGELNTIVFNTFVLLQLF 866
Query: 433 NEINARKIHGQRNVFEGFFSNPIFYSIWFITAASQVFIIQFGREAFSTKSLTLEQWLWCL 492
NEINARK++ +RNVFEG F N IF +I T QV I++FG FST SL++EQW+ C+
Sbjct: 867 NEINARKLY-ERNVFEGLFKNRIFVTIMGFTFGFQVIIVEFGGSFFSTVSLSIEQWIGCV 925
Query: 493 FFGIGTLLWGQVVTTVPTR 511
G+ +L++G ++ +P
Sbjct: 926 LLGMLSLIFGVLLRLIPVE 944
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 347 bits (891), Expect = e-108
Identities = 152/466 (32%), Positives = 228/466 (48%), Gaps = 40/466 (8%)
Query: 41 PTKVLPRSCAFIYGRDGNLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEI 100
P +L R G LE T E L V E +A +GLR +++AY+
Sbjct: 474 PEVILERCK-----SIGELEPLTEEGLRTLEEAVKE-LASEGLRVLAVAYKK-------- 519
Query: 101 NQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNIN 160
+D D+ + I ++L L + GIEDP R +V +AI + + AGI V M+TGD++
Sbjct: 520 ----LDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVE 575
Query: 161 TARSIATKCGILKPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDK 220
TA +IA +CGI + L+++G E + + + L++++ V AR SP K
Sbjct: 576 TAIAIAKECGIEAEAESALVIDGAELDA----LSDEELAELVEEL----SVFARVSPEQK 627
Query: 221 YTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDD 280
+V+ + S VVA+TGDG ND PALK ADVG AMG GTD AKEA+DI+L DD
Sbjct: 628 ARIVE-----ALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDD 682
Query: 281 NFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACA-VQDSPLKAVQMLWVNL 339
NF++IV AV+ GR VY +I KF+ + L+ NV V+ I + + PL +Q+LW+NL
Sbjct: 683 NFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINL 742
Query: 340 IMDTLASLALATEMPTPDLLLRKPYGRTKPLISKTMMKNILGQAIYQLTVVFTLLFVGDK 399
+ D+L +LAL E P D++ R P G + L ++ + + ++F L F+
Sbjct: 743 LTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYL 802
Query: 400 LLDIPTGRGAEFGSEPTQHFTVIFNTFVFMTLFNEINARKIHGQRNVFE-GFFSNPIFYS 458
L I G + Q T F V + L + R R FSN +
Sbjct: 803 LGFIANTLGLDLFQALLQ--TTAFTVLVLIQLLLTLAVRSRG--RPFLSSLLFSNKYLWL 858
Query: 459 IWFITAASQVFIIQFG---REAFSTKSLTLEQWLWCLFFGIGTLLW 501
+ Q+ II + F L+L +WL + + L
Sbjct: 859 ALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVALLLLYI 904
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 247 bits (633), Expect = 5e-72
Identities = 158/487 (32%), Positives = 242/487 (49%), Gaps = 73/487 (14%)
Query: 19 SAARALMKVTVIPR---------KGGGYRSLPTKVLPRSCAFIYGRDGNLEKFTREMQDR 69
S+ R M V + R KG + L C + +DG T++ +D
Sbjct: 437 SSERKWMAVKCVHRQDRSEMCFMKGAYEQVLK------YCTYYQKKDGKTLTLTQQQRDV 490
Query: 70 LVRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGI 129
+ E MA GLR I+ A P K LT L +VGI
Sbjct: 491 IQEEAAE-MASAGLRVIAFASG---PEK---------------------GQLTFLGLVGI 525
Query: 130 EDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGI-LKPGDDFLILEGKEFNR 188
DP RP V +A+ G+ + M+TGD+ TA SIA + G+ K + G++
Sbjct: 526 NDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQS---VSGEKL-- 580
Query: 189 RVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTND 248
D QQ L ++ P++ V AR+SP K +VK + K D VVA+TGDG ND
Sbjct: 581 ----DAMDDQQ--LSQIVPKVAVFARASPEHKMKIVKAL--QKRGD---VVAMTGDGVND 629
Query: 249 GPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLT 308
PALK AD+G AMG GTDVAKEA+D+ILTDD+F++I+ A+ G+ ++++I F+ FQL+
Sbjct: 630 APALKLADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLS 689
Query: 309 VNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTK 368
+V A+ + + +PL A+Q+LW+N++MD + +L E D++ + P R
Sbjct: 690 TSVAALSLIALATLMGFPNPLNAMQILWINILMDGPPAQSLGVEPVDKDVMRKPPRPRND 749
Query: 369 PLISKTMMKNILGQAIYQLTVVFTLLFVGDKLLDIPTGRGAEFGSEPTQHFTVIFNTFVF 428
+++K ++K IL AI + VV TL ++ D G + T+ F FVF
Sbjct: 750 KILTKDLIKKILVSAI--IIVVGTLFVFVREMQD---------GVITARDTTMTFTCFVF 798
Query: 429 MTLFNEINARKIHGQRNVFE-GFFSNPIF-YSIWF-ITAASQVFIIQFGREAFSTKSLTL 485
+FN + R ++VFE GFFSN +F Y++ I V + F T++L++
Sbjct: 799 FDMFNALACR--SQTKSVFEIGFFSNRMFNYAVGGSIIGQLLVIYFPPLQSVFQTEALSI 856
Query: 486 EQWLWCL 492
+ L+ L
Sbjct: 857 KDLLFLL 863
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 230 bits (588), Expect = 1e-65
Identities = 148/471 (31%), Positives = 223/471 (47%), Gaps = 49/471 (10%)
Query: 41 PTKVLPRSCAFIYGRDGNLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEI 100
P VL R C I DG T +M++ ++ + E LR +++A++D + E
Sbjct: 453 PEGVLER-CTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFKDIPDPREED 511
Query: 101 NQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNIN 160
+ N++ E ++LT + VVG+ DP RPEV DAI KC+ AGI V M+TGDN
Sbjct: 512 ---LLSDPANFEAIE---SDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKE 565
Query: 161 TARSIATKCGILKPGDD--FLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPT 218
TA +I + GI P +D F G+EF D G +Q + +R P+
Sbjct: 566 TAEAICRRIGIFSPDEDVTFKSFTGREF-----DEMGPAKQR---AACRSAVLFSRVEPS 617
Query: 219 DKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILT 278
K LV+ + + E+VA+TGDG ND PALKKAD+G AMG +GT+VAKEASD++L
Sbjct: 618 HKSELVE-----LLQEQGEIVAMTGDGVNDAPALKKADIGIAMG-SGTEVAKEASDMVLA 671
Query: 279 DDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVN 338
DDNF++IV AV GR +Y+++ +F+++ ++ N+ V+ F+ A L VQ+LWVN
Sbjct: 672 DDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFLTAALGIPEGLIPVQLLWVN 731
Query: 339 LIMDTLASLALATEMPTPDLLLRKPYGRTKPLISKTMMKNILGQAIY-QLTVVFTLLF-- 395
L+ D L + AL P D++ + P +PLI+ + L +Y L V ++
Sbjct: 732 LVTDGLPATALGFNPPDKDIMWKPPRRPDEPLITGWLFFRYLVVGVYVGLATVGGFVWWY 791
Query: 396 --------VGDKLLDIPTGRG--AEFGSEPTQHFTVIFNTFVFMTLFNEINARKIHGQRN 445
D P T+ + V + +FN +NA
Sbjct: 792 LLTHFTGCDEDSFTTCPDFEDPDCYVFEGKQPARTISLSVLVVIEMFNALNALSEDQS-- 849
Query: 446 VFEGFFSNPIFYSIWFITAASQVFIIQFG-------REAFSTKSLTLEQWL 489
P + + W I A + F F L+L WL
Sbjct: 850 ----LLRMPPWVNKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSLTDWL 896
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 204 bits (521), Expect = 3e-56
Identities = 144/496 (29%), Positives = 222/496 (44%), Gaps = 64/496 (12%)
Query: 49 CAFIYGRDGNLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTE 108
C+ G+DG + L+ +E +A +GLR ++ A + F +Q+ +T
Sbjct: 567 CSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDDQLKNETL 626
Query: 109 PNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATK 168
E ++L L ++GI DP R E A+ KC +AGI V M+TGD TA++IA +
Sbjct: 627 NRATAE----SDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQE 682
Query: 169 CGILKPG--------DDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDK 220
GI+ P D +++ G +F DA D + L K V+AR +P K
Sbjct: 683 VGIIPPNFIHDRDEIMDSMVMTGSQF-----DALSDEEVDDL-KALCL--VIARCAPQTK 734
Query: 221 YTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDD 280
+++ + K A+TGDG ND P+LK A+VG AMGI G+DVAK+ASDI+L+DD
Sbjct: 735 VKMIEALHRRK-----AFCAMTGDGVNDSPSLKMANVGIAMGINGSDVAKDASDIVLSDD 789
Query: 281 NFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQDS------PLKAVQM 334
NF+SI+ A+ GR ++D+I KF+ L NV I+ IG A +D PL V++
Sbjct: 790 NFASILNAIEEGRRMFDNIMKFVLHLLAENVAEAILLIIG-LAFRDENGKSVFPLSPVEI 848
Query: 335 LWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLISKTMMKNILGQAIYQLTVVFTLL 394
LW +I ++ L E PDL+ R P+ + K ++ ++ + L
Sbjct: 849 LWCIMITSCFPAMGLGLEKAAPDLMDRLPHDNEVGIFQKELIIDMFAYGFF-LGGSCLAS 907
Query: 395 FVGDKLLDIPTGR-----GAEFGSEPTQHFTVIFNTFVFMTLFNEINARKIHGQRNVFEG 449
F G L +G A + + F F MT I A ++ N F
Sbjct: 908 FTG-ILYGFGSGNLGHDCDAHYHAGCNDVFKARSAAFATMTFCALILAVEVKDFDNSFFN 966
Query: 450 FFSNP--------IFYSIW------------FITAASQVFIIQFGREAFSTKSLTLEQW- 488
P F+SI ++A ++I + F K + E W
Sbjct: 967 LHGIPDGDSNFKEFFHSIVENKFLAWAIAFAAVSAFPTIYIPVINDDVFKHKPIGAE-WG 1025
Query: 489 ---LWCLFFGIGTLLW 501
+ F G +W
Sbjct: 1026 LAAAATIAFFFGAEIW 1041
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 197 bits (502), Expect = 6e-56
Identities = 87/314 (27%), Positives = 134/314 (42%), Gaps = 93/314 (29%)
Query: 42 TKVLPRSCAFIYGRDGNLEKFT----REMQDRL--VRNVIEPMACDGLRTISIAYRDFVP 95
+ VL R + DG+ F + +R +A GLR ++ A ++
Sbjct: 317 SSVLKRMSVIVETPDGSDLLFVKGAPEFILERCNNYEEKYLELARQGLRVLAFASKELED 376
Query: 96 GKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVT 155
+L L ++ EDP+RP+ + I + + AGI V M+T
Sbjct: 377 ------------------------DLEFLGLITFEDPLRPDAKETIEELKAAGIKVVMIT 412
Query: 156 GDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARS 215
GDN+ TA++IA + GI V AR
Sbjct: 413 GDNVLTAKAIAKELGID--------------------------------------VFARV 434
Query: 216 SPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDI 275
SP K +V+ + +VA+TGDG ND PALKKADVG AMG AK A+DI
Sbjct: 435 SPEQKLQIVEALQKKG-----HIVAMTGDGVNDAPALKKADVGIAMG------AKAAADI 483
Query: 276 ILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQML 335
+L DD+ S+IVKAV GR ++ +I + + + N++ + +A +
Sbjct: 484 VLLDDDLSAIVKAVKEGRKIFSNIKSNIFWAIAYNLILIPLALLLIV------------- 530
Query: 336 WVNLIMDTLASLAL 349
+ L++ LA+LAL
Sbjct: 531 -IILLLPMLAALAL 543
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 167 bits (424), Expect = 9e-49
Identities = 60/181 (33%), Positives = 86/181 (47%), Gaps = 12/181 (6%)
Query: 327 SPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLISKTMMKNILGQAIYQ 386
PL +Q+LW+NL+ D L +LAL E P PDL+ R P +PL S+ +++ IL Q +
Sbjct: 2 LPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKLLRRILLQGLLI 61
Query: 387 LTVVFTLLFVGDKLLDIPTGRGAEFGSEPTQHFTVIFNTFVFMTLFNEINARKIHGQRNV 446
V + F+G I SE T+ FNT V LFN +NAR +
Sbjct: 62 AIVTLLVFFLGLLGFGI---------SESGLAQTMAFNTLVLSQLFNALNARSLRRSLFK 112
Query: 447 FEGFFSNPIFYSIWFITAASQVFIIQ--FGREAFSTKSLTLEQWLWCLFFGIGTLLWGQV 504
G FSN + ++ Q+ II + F T L+LEQWL L + LL ++
Sbjct: 113 I-GLFSNKLLLLAVLLSLLLQLLIIYVPGLQAVFGTTPLSLEQWLIVLGLALVVLLVVEL 171
Query: 505 V 505
Sbjct: 172 R 172
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 177 bits (450), Expect = 4e-47
Identities = 112/304 (36%), Positives = 163/304 (53%), Gaps = 40/304 (13%)
Query: 121 LTGLCVVGIE---DPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDD 177
LC VG+ DP R VPDA+ KC+ AGI V MVTGD+ TA++IA GI+ G++
Sbjct: 554 TDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 613
Query: 178 F-------LILEGKEFNRRVRDA---NG----DVQQHLLDKVWPRLR-----VLARSSPT 218
L + + N R A +G D+ LD++ L+ V AR+SP
Sbjct: 614 TVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDEI---LKYHTEIVFARTSPQ 670
Query: 219 DKYTLVKGIIDSKVSDSRE--VVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDII 276
K +V+G R+ +VAVTGDG ND PALKKAD+G AMGIAG+DV+K+A+D+I
Sbjct: 671 QKLIIVEGC-------QRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMI 723
Query: 277 LTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLW 336
L DDNF+SIV V GR ++D++ K + + LT N+ + I A PL + +L
Sbjct: 724 LLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTITILC 783
Query: 337 VNLIMDTLASLALATEMPTPDLLLRKPYGRTK------PLISKTMMKNILGQAIYQLTVV 390
++L D + +++LA E D++ R+P LIS + + QA+
Sbjct: 784 IDLGTDMVPAISLAYEKAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTY 843
Query: 391 FTLL 394
F +L
Sbjct: 844 FVIL 847
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 131 bits (332), Expect = 4e-32
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 43/197 (21%)
Query: 124 LCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEG 183
+ V+ + D +RP+ +AI + GI V M+TGDN TA +IA + GI D+
Sbjct: 529 VGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGI----DE------ 578
Query: 184 KEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTG 243
V A P DK +V+ ++ VA+ G
Sbjct: 579 ---------------------------VRAELLPEDKAEIVR-----ELQAEGRKVAMVG 606
Query: 244 DGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFL 303
DG ND PAL ADVG AMG +GTDVA EA+D++L D+ S++ +A+ R I + L
Sbjct: 607 DGINDAPALAAADVGIAMG-SGTDVAIEAADVVLMRDDLSAVPEAIDLSRATRRIIKQNL 665
Query: 304 QFQLTVNVVAVIVAFIG 320
+ N +A+ +A G
Sbjct: 666 FWAFGYNAIAIPLAAGG 682
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 123 bits (310), Expect = 1e-29
Identities = 75/246 (30%), Positives = 108/246 (43%), Gaps = 48/246 (19%)
Query: 80 CDGLRTISIAYRDFVPGKAEINQVHIDTEPNW----DDEEYIVNNLTGLCVVGIEDPVRP 135
DG + I F+ E D ++ + L V+ + D +RP
Sbjct: 328 VDGGEEVRIGNPRFLELAIEPISASPDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRP 387
Query: 136 EVPDAIRKCQRAG-ITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRDAN 194
E +AI +RAG I + M+TGDN + A ++A + GI +
Sbjct: 388 EAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE--------------------- 426
Query: 195 GDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKK 254
V A P DK +VK + + VVA+ GDG ND PAL
Sbjct: 427 ----------------VHAELLPEDKLAIVKELQEEGG-----VVAMVGDGINDAPALAA 465
Query: 255 ADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAV 314
ADVG AMG AG+DVA EA+DI+L +D+ SS+ A+ R I + L + L N+VA+
Sbjct: 466 ADVGIAMG-AGSDVAIEAADIVLLNDDLSSLPTAIDLSRKTRRIIKQNLAWALGYNLVAI 524
Query: 315 IVAFIG 320
+A G
Sbjct: 525 PLAAGG 530
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 112 bits (282), Expect = 4e-26
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 43/193 (22%)
Query: 125 CVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGK 184
V+ + D ++PE + I+ +R GI M+TGDN TA+++A + GI
Sbjct: 407 GVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIEN----------- 455
Query: 185 EFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGD 244
V A P DK L+K K+ + +VVA+ GD
Sbjct: 456 --------------------------VRAEVLPDDKAALIK-----KLQEKGKVVAMVGD 484
Query: 245 GTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQ 304
G ND PAL +ADVG A+G AGTDVA EA+D++L ++ + + A+ R I + L
Sbjct: 485 GINDAPALAQADVGIAIG-AGTDVAIEAADVVLLRNDLNDVATAIDLSRKTLRRIKQNLL 543
Query: 305 FQLTVNVVAVIVA 317
+ NV+A+ +A
Sbjct: 544 WAFGYNVIAIPIA 556
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 104 bits (262), Expect = 2e-23
Identities = 76/284 (26%), Positives = 132/284 (46%), Gaps = 43/284 (15%)
Query: 65 EMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGL 124
E + ++++ M G+R I++A + G+A+ + D+E+ I+
Sbjct: 461 ESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKT--------DEEQLIIEGF--- 509
Query: 125 CVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLI---- 180
+G DP + +AI + GI V+++TGDN I + GI +DFL+
Sbjct: 510 --LGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGI--DANDFLLGADI 565
Query: 181 --LEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREV 238
L +E R +R + + AR +P K ++ + +
Sbjct: 566 EELSDEELARELR----------------KYHIFARLTPMQKSRIIGLL-----KKAGHT 604
Query: 239 VAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDS 298
V GDG ND PAL+KADVG ++ A D+AKEASDIIL + + + + V+ GRN + +
Sbjct: 605 VGFLGDGINDAPALRKADVGISVDTA-ADIAKEASDIILLEKSLMVLEEGVIEGRNTFGN 663
Query: 299 IAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMD 342
I K+L+ + N V + + + P+ ++ +L NL+ D
Sbjct: 664 ILKYLKMTASSNFGNVFSVLVASAFIPFLPMLSLHLLIQNLLYD 707
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 101 bits (253), Expect = 1e-22
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 43/196 (21%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGIT-VRMVTGDNINTARSIATKCGILKPGDDFLILEGK 184
+ + D RP+ +AI + + GI V M+TGD A +A + GI D+
Sbjct: 356 YILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI----DE------- 404
Query: 185 EFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGD 244
V A P DK +VK + + VA+ GD
Sbjct: 405 --------------------------VHAELLPEDKLEIVKELREKY-----GPVAMVGD 433
Query: 245 GTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQ 304
G ND PAL ADVG AMG +G+DVA E +D++L +D+ S + +A+ R + + +
Sbjct: 434 GINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLARRTRRIVKQNVV 493
Query: 305 FQLTVNVVAVIVAFIG 320
L + ++ +++A G
Sbjct: 494 IALGIILLLILLALFG 509
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 100 bits (252), Expect = 4e-22
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 34/208 (16%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGI---LKPGDDFLILE 182
++ + DP R + + I + + G+ V+MVTGD++ A+ A + G+ + D L +
Sbjct: 436 LLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGD 495
Query: 183 GK-----EFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSRE 237
+ V DA+G + V+P KY +V+ +
Sbjct: 496 NRDDLPSGLGEMVEDADGFAE------VFPE----------HKYEIVE-----ILQKRGH 534
Query: 238 VVAVTGDGTNDGPALKKADVGFAMGIAG-TDVAKEASDIILTDDNFSSIVKAVMWGRNVY 296
+V +TGDG ND PALKKADVG A +AG TD A+ A+DI+LT+ S IV A++ R ++
Sbjct: 535 LVGMTGDGVNDAPALKKADVGIA--VAGATDAARSAADIVLTEPGLSVIVDAILESRKIF 592
Query: 297 DSIAKFLQFQLTVNVVAVIVAFIGACAV 324
+ ++ +++ + IV F G +
Sbjct: 593 QRMKSYVIYRIAETI--RIVFFFGLLIL 618
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 90.9 bits (226), Expect = 6e-19
Identities = 96/428 (22%), Positives = 162/428 (37%), Gaps = 107/428 (25%)
Query: 73 NVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDP 132
V++ +G R +++AY++ K + + + + D E +NLT L + E+P
Sbjct: 605 EVLKSYTREGYRVLALAYKEL--PKLTLQKA---QDLSRDAVE---SNLTFLGFIVFENP 656
Query: 133 VRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLIL---------EG 183
++P+ + I++ +RA I M+TGDN TA +A +CGI+ P + LIL +
Sbjct: 657 LKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNP-SNTLILAEAEPPESGKP 715
Query: 184 KEFNRRVRDAN-------------------------------GDVQQHL-------LDKV 205
+ V D+ G L L ++
Sbjct: 716 NQIKFEVIDSIPFASTQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRL 775
Query: 206 WPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAM---- 261
V AR +P K TLV+ + V + GDG ND ALK+ADVG ++
Sbjct: 776 LSHTTVFARMAPDQKETLVE-----LLQKLDYTVGMCGDGANDCGALKQADVGISLSEAE 830
Query: 262 -GIAGTDVAKEAS-----DIILTDDNFSSIVKAVMWGR-NVYDSIAKF---LQFQLTVNV 311
+A +K AS ++I GR + S F + L
Sbjct: 831 ASVAAPFTSKLASISCVPNVIRE-------------GRCALVTSFQMFKYMALYSLIQFY 877
Query: 312 VAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLI 371
I+ IG S L Q L ++L++ +L ++ P L +P L
Sbjct: 878 SVSILYLIG------SNLGDGQFLTIDLLLIFPVALLMSRNKPLKKLSKERPPSN---LF 928
Query: 372 SKTMMKNILGQAIYQLTVVFTLLFVGDKL----LDIPTGRGAEFGSEPTQHFTVIFNTFV 427
S ++ ++L Q + + L+F + P E P TV+F
Sbjct: 929 SVYILTSVLIQFVLHILSQVYLVFELHAQPWYKPENPVDLEKEN--FPNLLNTVLF---- 982
Query: 428 FMTLFNEI 435
F++ F +
Sbjct: 983 FVSSFQYL 990
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 90.5 bits (225), Expect = 8e-19
Identities = 85/289 (29%), Positives = 137/289 (47%), Gaps = 43/289 (14%)
Query: 81 DGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNN-LTGLCVVGIEDPVRPEVPD 139
DG R + +A R+ +PG Q D+ + ++ LT L DP +
Sbjct: 510 DGFRVLLVATRE-IPGGESRAQYSTA-----DERDLVIRGFLTFL------DPPKESAAP 557
Query: 140 AIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRDANGDVQQ 199
AI + G+ V+++TGDN I + G L+PG+ L G E +A D
Sbjct: 558 AIAALRENGVAVKVLTGDNPIVTAKICREVG-LEPGE---PLLGTEI-----EAMDDAA- 607
Query: 200 HLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGF 259
L + V A+ +P K ++K + + V GDG ND PAL+ ADVG
Sbjct: 608 --LAREVEERTVFAKLTPLQKSRVLKAL-----QANGHTVGFLGDGINDAPALRDADVGI 660
Query: 260 AMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTV---NVVAVIV 316
++ +G D+AKE++DIIL + + + + V+ GR + +I K+L + NV +V+V
Sbjct: 661 SVD-SGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLV 719
Query: 317 --AFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKP 363
AFI P+ A+ +L NL+ D ++ L+L + + LRKP
Sbjct: 720 ASAFIPF-----LPMLAIHLLLQNLMYD-ISQLSLPWDKMDKE-FLRKP 761
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 89.7 bits (223), Expect = 1e-18
Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 57/293 (19%)
Query: 75 IEPMACDGLRTISIAYRDFVPGKAEI-NQVHIDTEPNWDDE--------EYIVNNLTGLC 125
+E A +GLRT+ IAYR+ + E N+ + + D E I +L L
Sbjct: 565 LENYASEGLRTLCIAYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLG 624
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLIL---- 181
IED ++ VP+ I ++AGI + ++TGD + TA +I C +L + +++
Sbjct: 625 ATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSDS 684
Query: 182 -----EGKEFNRRVRDANGDVQQHLLDK---------------VWPRLR----------- 210
+ + + + +L D + L
Sbjct: 685 LDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCK 744
Query: 211 -VLA-RSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTD- 267
V+ R SP+ K +V+ + K S + +A+ GDG ND +++ADVG +GI+G +
Sbjct: 745 AVICCRVSPSQKADVVRLV---KKSTGKTTLAI-GDGANDVSMIQEADVG--VGISGKEG 798
Query: 268 -VAKEASDIILTDDNFSSIVKAVMW-GRNVYDSIAKFLQFQLTVNVVAVIVAF 318
A ASD + F + K ++ GR Y I+K + + N++ I+ F
Sbjct: 799 MQAVMASDFAIG--QFRFLTKLLLVHGRWSYKRISKMILYFFYKNLIFAIIQF 849
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 85.4 bits (212), Expect = 2e-17
Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 43/168 (25%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
V+ ++D V+P + + + ++ GI M+TGDN TA +IA + G+ DDF+
Sbjct: 441 VIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGV----DDFI------ 490
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
A ++P DK L++ + +VA+TGDG
Sbjct: 491 ---------------------------AEATPEDKLALIR-----QEQAEGRLVAMTGDG 518
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGR 293
TND PAL +ADVG AM +GT AKEA++++ D N + +++ V G+
Sbjct: 519 TNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSNPTKLIEVVEIGK 565
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 82.0 bits (203), Expect = 4e-16
Identities = 63/264 (23%), Positives = 119/264 (45%), Gaps = 35/264 (13%)
Query: 57 GNLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEY 116
G + M R ++ V + + GLR +++A + + + + DE
Sbjct: 489 GEIVPLDDIMLRR-IKRVTDTLNRQGLRVVAVATKYLPAREGDYQRA---------DE-- 536
Query: 117 IVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGD 176
++L + DP + A++ + +G+TV+++TGD+ A + + G+
Sbjct: 537 --SDLILEGYIAFLDPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGL--DAG 592
Query: 177 DFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSR 236
+ LI G + D L + R + AR +P K +V +
Sbjct: 593 EVLI--GSDIETLSDDE--------LANLAERTTLFARLTPMHKERIVT-----LLKREG 637
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVY 296
VV GDG ND PAL+ AD+G ++ D+A+EA+DIIL + + + + V+ GR +
Sbjct: 638 HVVGFMGDGINDAPALRAADIGISVD-GAVDIAREAADIILLEKSLMVLEEGVIEGRRTF 696
Query: 297 DSIAKFLQFQLTV---NVVAVIVA 317
++ K+++ + NV +V+VA
Sbjct: 697 ANMLKYIKMTASSNFGNVFSVLVA 720
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 80.7 bits (199), Expect = 7e-16
Identities = 74/281 (26%), Positives = 133/281 (47%), Gaps = 51/281 (18%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
V+ ++D V+ + + + ++ GI M+TGDN TA +IA + G+ DDF+
Sbjct: 440 VIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGV----DDFI------ 489
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
A ++P DK L++ + ++VA+TGDG
Sbjct: 490 ---------------------------AEATPEDKIALIR-----QEQAEGKLVAMTGDG 517
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQF 305
TND PAL +ADVG AM +GT AKEA++++ D + + +++ V G+ + + F
Sbjct: 518 TNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTF 576
Query: 306 QLTVNVVAVIVAFIGAC-AVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPY 364
+ N VA A I A A L+A+ ++ ++ + S + + P L+
Sbjct: 577 SIA-NDVAKYFAIIPAIFAAAYPQLQALNIMCLHSPDSAILSALIFNALIIPALIPLALK 635
Query: 365 G-RTKPLISKTMM-KNILGQAIYQLTVVFTLLFVGDKLLDI 403
G +PL + ++ +N+ IY L + + F+G K++D+
Sbjct: 636 GVSYRPLTASALLRRNLW---IYGLGGLI-VPFIGIKVIDL 672
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 77.9 bits (193), Expect = 6e-15
Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 45/159 (28%)
Query: 124 LCVVGIEDPVRPEVPDAIRKCQRAGI-TVRMVTGDNINTARSIATKCGILKPGDDFLILE 182
L V+ ++D V+P + + + ++ GI TV M+TGDN TA +IA + G+ DDFL
Sbjct: 437 LGVIYLKDIVKPGIKERFAELRKMGIKTV-MITGDNPLTAAAIAAEAGV----DDFL--- 488
Query: 183 GKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVT 242
A ++P DK L++ + ++ R +VA+T
Sbjct: 489 ------------------------------AEATPEDKLALIR----QEQAEGR-LVAMT 513
Query: 243 GDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
GDGTND PAL +ADVG AM +GT AKEA +++ D N
Sbjct: 514 GDGTNDAPALAQADVGVAMN-SGTQAAKEAGNMVDLDSN 551
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 71.2 bits (175), Expect = 7e-13
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 45/153 (29%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ ++D +R + AI + + GI M+TGDN A +IA + GI
Sbjct: 562 LIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGI-------------- 607
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
D + LL P DK V + + +A+ GDG
Sbjct: 608 ----------DFRAGLL--------------PEDKVKAVTEL------NQHAPLAMVGDG 637
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILT 278
ND PA+K A +G AMG +GTDVA E +D LT
Sbjct: 638 INDAPAMKAASIGIAMG-SGTDVALETADAALT 669
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 69.4 bits (170), Expect = 3e-12
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ I DP+R + A+++ +AG + M+TGDN TA +IA + GI
Sbjct: 644 LLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGI-------------- 689
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
D V+A P K +K ++ VA+ GDG
Sbjct: 690 -----------------D------EVIAGVLPDGKAEAIK-----RLQSQGRQVAMVGDG 721
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
ND PAL +ADVG AMG G+DVA E + I L + + A+
Sbjct: 722 INDAPALAQADVGIAMG-GGSDVAIETAAITLMRHSLMGVADAL 764
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 67.0 bits (163), Expect = 1e-11
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 44/212 (20%)
Query: 117 IVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGD 176
++ + L V+ ++D ++ + + R+ + GI M TGDN TA +IA + G+
Sbjct: 426 VLEDNEILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD---- 481
Query: 177 DFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSR 236
R +A P DK +++ +
Sbjct: 482 ---------------------------------RFVAECKPEDKINVIR-----EEQAKG 503
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVY 296
+VA+TGDGTND PAL +A+VG AM +GT AKEA+++I D N + +++ V+ G+ +
Sbjct: 504 HIVAMTGDGTNDAPALAEANVGLAMN-SGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLL 562
Query: 297 DSIAKFLQFQLTVNVVAVIVAFIGACAVQDSP 328
+ F + N +A A + A + P
Sbjct: 563 MTRGSLTTFSIA-NDIAKYFAILPAMFMAAMP 593
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 50.0 bits (119), Expect = 6e-07
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 31/145 (21%)
Query: 112 DDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGI 171
V +L L ++ + DP+ P +A+++ + AGI + ++TGDN TA +IA G+
Sbjct: 74 GATVVAVLDLVVLGLIALTDPLYPGAREALKELKEAGIKLAILTGDNRLTANAIARLLGL 133
Query: 172 LKPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSK 231
D L+ + + K P++ LA +
Sbjct: 134 ----FDALV------------SADLYGLVGVGKPDPKIFELAL---------------EE 162
Query: 232 VSDSREVVAVTGDGTNDGPALKKAD 256
+ E V + GDG ND PA K A
Sbjct: 163 LGVKPEEVLMVGDGVNDIPAAKAAG 187
>gnl|CDD|152858 pfam12424, ATP_Ca_trans_C, Plasma membrane calcium transporter
ATPase C terminal. This domain family is found in
eukaryotes, and is approximately 60 amino acids in
length. The family is found in association with
pfam00689, pfam00122, pfam00702, pfam00690. There is a
conserved QTQ sequence motif. This family is the C
terminal of a calcium transporting ATPase located in the
plasma membrane.
Length = 67
Score = 44.0 bits (104), Expect = 5e-06
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 550 GQILWIRGLTRLQTQ 564
GQILWIRGLTRLQTQ
Sbjct: 1 GQILWIRGLTRLQTQ 15
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 44.7 bits (106), Expect = 7e-05
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 234 DSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
EV+A GD TND L+ A +G AMG A + KE +D + T ++ + +A+
Sbjct: 204 KLEEVIAF-GDSTNDIEMLEVAGLGVAMGNA-DEELKELADYVTTSNDEDGVAEAL 257
>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of
haloacid dehalogenase superfamily. This subfamily of
sequences falls within the Class-IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase superfamily of
aspartate-nucleophile hydrolases. The use of the name
"Cof" as an identifier here is arbitrary and refers to
the E. coli Cof protein. This subfamily is notable for
the large number of recent paralogs in many species.
Listeria, for instance, has 12, Clostridium, Lactococcus
and Streptococcus pneumoniae have 8 each, Enterococcus
and Salmonella have 7 each, and Bacillus subtilus,
Mycoplasma, Staphylococcus and E. coli have 6 each. This
high degree of gene duplication is limited to the gamma
proteobacteria and low-GC gram positive lineages. The
profusion of genes in this subfamily is not coupled with
a high degree of divergence, so it is impossible to
determine an accurate phylogeny at the equivalog level.
Considering the relationship of this subfamily to the
other known members of the HAD-IIB subfamily
(TIGR01484), sucrose and trehalose phosphatases and
phosphomannomutase, it seems a reasonable hypothesis
that these enzymes act on phosphorylated sugars.
Possibly the diversification of genes in this subfamily
represents the diverse sugars and polysaccharides that
various bacteria find in their biological niches. The
members of this subfamily are restricted almost
exclusively to bacteria (one sequences from S. pombe
scores above trusted, while another is between trusted
and noise). It is notable that no archaea are found in
this group, the closest relations to the archaea found
here being two Deinococcus sequences [Unknown function,
Enzymes of unknown specificity].
Length = 256
Score = 43.0 bits (102), Expect = 2e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 219 DKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILT 278
K + ++ + ++ +V+A GDG ND L+ A G AMG A + K +D + T
Sbjct: 188 SKGSALQSLAEALGISLEDVIAF-GDGMNDIEMLEAAGYGVAMGNA-DEELKALADYV-T 244
Query: 279 DDN 281
D N
Sbjct: 245 DSN 247
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 44.1 bits (104), Expect = 2e-04
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 81 DGLRTISIAYRDFVPGKAEINQVHIDTEPNWDD-----------EEYIVNNLTGLCVVGI 129
GLRT+ + R+ +E Q H E + NNLT L I
Sbjct: 666 LGLRTLVVGMREL--NDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAI 723
Query: 130 EDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSI 165
ED ++ VP+AI + AGI V ++TGD TA SI
Sbjct: 724 EDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISI 759
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 40.0 bits (94), Expect = 6e-04
Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 26/153 (16%)
Query: 111 WDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCG 170
D E I E + P V +A+++ + GI + + T + R +
Sbjct: 11 LDSEPGIAEIE--------ELELYPGVKEALKELKEKGIKLALATN---KSRREVLELLE 59
Query: 171 ILKPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSP-TDKYTLVKGIID 229
L D F V +NG + + ++ P DK ++
Sbjct: 60 ELGLDDYFDP---------VITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLG 110
Query: 230 SKVSDSREVVAVTGDGTNDGPALKKA-DVGFAM 261
EV+ V GD ND K A +G A+
Sbjct: 111 VDPE---EVLMV-GDSLNDIEMAKAAGGLGVAV 139
>gnl|CDD|219777 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 39.9 bits (94), Expect = 0.002
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 234 DSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKA 288
D EV+A GDG ND L+ A +G AMG A + K A+D + +N + KA
Sbjct: 201 DLEEVIAF-GDGENDIEMLELAGLGVAMGNA-SPEVKAAADYVTGSNNEDGVAKA 253
>gnl|CDD|234910 PRK01158, PRK01158, phosphoglycolate phosphatase; Provisional.
Length = 230
Score = 36.1 bits (84), Expect = 0.035
Identities = 47/208 (22%), Positives = 74/208 (35%), Gaps = 62/208 (29%)
Query: 139 DAIRKCQRAGITVRMVTGDNINTARSIATKCGILKP---------GDDFL----ILEGKE 185
+AIRK ++ GI V + TG+ + AR+ A G P F L E
Sbjct: 27 EAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRIFLGDIE 86
Query: 186 --------FNRRVRDANGDVQQHLLDKVWPRLR----VLARSSPTDKY-TLVKG------ 226
+R +A+ L K+ P R L R+ P ++ L++
Sbjct: 87 ECEKAYSELKKRFPEASTS-----LTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLE 141
Query: 227 IIDSKVS-----------------------DSREVVAVTGDGTNDGPALKKADVGFAMGI 263
I+DS + D EV A+ GD ND + A G A+
Sbjct: 142 IVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAI-GDSENDLEMFEVAGFGVAVAN 200
Query: 264 AGTDVAKEASDIILTDDNFSSIVKAVMW 291
A + KEA+D + + +A+
Sbjct: 201 A-DEELKEAADYVTEKSYGEGVAEAIEH 227
>gnl|CDD|213628 TIGR01487, Pglycolate_arch, phosphoglycolate phosphatase,
TA0175-type. This group of Archaeal sequences, now
known to be phosphoglycolate phosphatases, is most
closely related to the sucrose-phosphate phosphatases
from plants and cyanobacteria (TIGR01485). Together,
these two models comprise a subfamily model (TIGR01482).
TIGR01482, in turn, is a member of the IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases.
Length = 215
Score = 35.5 bits (82), Expect = 0.049
Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 46/198 (23%)
Query: 135 PEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGI-------------LKPGDDFLIL 181
+AIRK ++ GI V +VTG+ + AR++A G D FL
Sbjct: 21 ERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLAN 80
Query: 182 EGKE-FNRRVRDANGDVQQHLLDKVWPR--LRVLARSSPTD------------------- 219
+E F + L +PR L ++ D
Sbjct: 81 MEEEWFLDEEKKKRFPRD--RLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVASGFA 138
Query: 220 ---KYTLV-KGIIDSKVSD----SREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKE 271
V KG+ K+ + E VA GD ND + A+ A D KE
Sbjct: 139 IHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVANA-DDQLKE 197
Query: 272 ASDIILTDDNFSSIVKAV 289
+D + ++ +V+ +
Sbjct: 198 IADYVTSNPYGEGVVEVL 215
>gnl|CDD|232927 TIGR00338, serB, phosphoserine phosphatase SerB. Phosphoserine
phosphatase catalyzes the reaction 3-phospho-serine +
H2O = L-serine + phosphate. It catalyzes the last of
three steps in the biosynthesis of serine from
D-3-phosphoglycerate. Note that this enzyme acts on free
phosphoserine, not on phosphoserine residues of
phosphoproteins [Amino acid biosynthesis, Serine
family].
Length = 219
Score = 35.4 bits (82), Expect = 0.049
Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 23/156 (14%)
Query: 132 PVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVR 191
P+ + ++ + G V +++G A + K G+ + L +E +
Sbjct: 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLT---- 140
Query: 192 DANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPA 251
G V+ ++D + K + ++ + VAV GDG ND
Sbjct: 141 ---GLVEGPIVDA-------------SYKGKTLLILLRKEGISPENTVAV-GDGANDLSM 183
Query: 252 LKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVK 287
+K A +G A ++ +DI + + + I+
Sbjct: 184 IKAAGLGIAFN--AKPKLQQKADICINKKDLTDILP 217
>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 32.9 bits (75), Expect = 0.19
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 192 DANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPA 251
D G + Q P RV A + P K +++ ++ E V + G+G ND A
Sbjct: 54 DRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIR-----ELKKRYEKVVMVGNGANDILA 108
Query: 252 LKKADVGFAMGIAGTDV---AKEASDIILTD 279
L++AD+G I V +D++L +
Sbjct: 109 LREADLGI-CTIQQEGVPERLLLTADVVLKE 138
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 33.4 bits (77), Expect = 0.19
Identities = 29/134 (21%), Positives = 43/134 (32%), Gaps = 29/134 (21%)
Query: 131 DPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDF----LILEGKEF 186
+ P + + + AG V +++G IA + GI D L ++ +
Sbjct: 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGI----DYVVANELEIDDGKL 131
Query: 187 NRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGT 246
RV D + LR LA E VA GD
Sbjct: 132 TGRVVGPICDGEGKAK-----ALRELAAELGIPL---------------EETVAY-GDSA 170
Query: 247 NDGPALKKADVGFA 260
ND P L+ A + A
Sbjct: 171 NDLPMLEAAGLPIA 184
>gnl|CDD|233437 TIGR01491, HAD-SF-IB-PSPlk, HAD-superfamily, subfamily-IB
PSPase-like hydrolase, archaeal. This hypothetical
equivalog is a member of the IB subfamily (TIGR01488) of
the haloacid dehalogenase (HAD) superfamily of
aspartate-nucleophile hydrolases. The sequences modelled
by This model are all from archaeal species. The
phylogenetically closest group of sequences to these are
phosphoserine phosphatases (TIGR00338). There are no
known archaeal phosphoserine phosphatases, and no
archaea fall within TIGR00338. It is likely, then, that
This model represents the archaeal branch of the PSPase
equivalog.
Length = 201
Score = 32.2 bits (73), Expect = 0.49
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 21/136 (15%)
Query: 130 EDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRR 189
E +R + +R + G+ +V+G + A+ +A K D++ N
Sbjct: 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNP-----DYVYS-----NEL 127
Query: 190 VRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDG 249
V D G +Q +RV + +K V+ + +++ S GD ND
Sbjct: 128 VFDEKGFIQP------DGIVRV----TFDNKGEAVERL-KRELNPSLTETVAVGDSKNDL 176
Query: 250 PALKKADVGFAMGIAG 265
P + AD+ ++G G
Sbjct: 177 PMFEVADISISLGDEG 192
>gnl|CDD|197280 cd09183, PLDc_FAM83C_N, N-terminal phospholipase D-like domain of
the uncharacterized protein, Family with sequence
similarity 83C. N-terminal phospholipase D (PLD)-like
domain of the uncharacterized protein, Family with
sequence similarity 83C (FAM83C). Since the N-terminal
PLD-like domain of FAM83 proteins shows only trace
similarity to the PLD catalytic domain and lacks the
functionally important histidine residue, FAM83 proteins
may share a similar three-dimensional fold with PLD
enzymes, but are most unlikely to carry PLD activity.
The N-terminus of FAM83C shows high homology to other
FAM83 family members, indicating that FAM83C might have
arisen early in vertebrate evolution by duplication of a
gene in the FAM83 family.
Length = 274
Score = 31.4 bits (71), Expect = 1.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 196 DVQQHLLDKVWPRLRVLARSSPT--------DKYTLVKGIIDSKVSDSREVVAVTGD 244
D L+ WP + + ++SPT DK +K +I S +S ++ V+A+ D
Sbjct: 92 DFDPPDLELGWPEIPLATKASPTEAQIFFQRDKANNIKDLIRSLISMAKTVIAIVMD 148
>gnl|CDD|233435 TIGR01488, HAD-SF-IB, Haloacid Dehalogenase superfamily, subfamily
IB, phosphoserine phosphatase-like. This model
represents a subfamily of the Haloacid Dehalogenase
superfamily of aspartate-nucleophile hydrolases.
Subfamily IA, B, C and D are distinguished from the rest
of the superfamily by the presence of a variable domain
between the first and second conserved catalytic motifs.
In subfamilies IA and IB, this domain consists of an
alpha-helical bundle. It was necessary to model these
two subfamilies separately, breaking them at a an
apparent phylogenetic bifurcation, so that the resulting
model(s) are not so broadly defined that members of
subfamily III (which lack the variable domain) are
included. Subfamily IA includes the enzyme phosphoserine
phosphatase (TIGR00338) as well as three hypothetical
equivalogs. Many members of these hypothetical
equivalogs have been annotated as PSPase-like or
PSPase-family proteins. In particular, the hypothetical
equivalog which appears to be most closely related to
PSPase contains only Archaea (while TIGR00338 contains
only eukaryotes and bacteria) of which some are
annotated as PSPases. Although this is a reasonable
conjecture, none of these sequences has sufficient
evidence for this assignment. If such should be found,
this model should be retired while the PSPase model
should be broadened to include these sequences [Unknown
function, Enzymes of unknown specificity].
Length = 177
Score = 30.8 bits (70), Expect = 1.1
Identities = 30/127 (23%), Positives = 42/127 (33%), Gaps = 25/127 (19%)
Query: 132 PVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLI---LEGKEFNR 188
+RP + I + GI +V+G +A K GI D + LE +
Sbjct: 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGI-----DDVFANRLEFDDNGL 127
Query: 189 RVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTND 248
G V K L+ L S +++AV GD ND
Sbjct: 128 LTGPIEGQVNPEGECKG-KVLKELLEESKITLK---------------KIIAV-GDSVND 170
Query: 249 GPALKKA 255
P LK A
Sbjct: 171 LPMLKLA 177
>gnl|CDD|182523 PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase;
Provisional.
Length = 272
Score = 31.5 bits (72), Expect = 1.1
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 236 REVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVM 290
+ VVA GD ND L+ A +G AMG A D K +D+++ D+ SI + +
Sbjct: 216 KNVVAF-GDNFNDISMLEAAGLGVAMGNA-DDAVKARADLVIGDNTTPSIAEFIY 268
>gnl|CDD|221706 pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family.
Length = 263
Score = 31.1 bits (71), Expect = 1.4
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 298 SIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEM--PT 355
F + V + AF A + L + LI L S A+A E T
Sbjct: 35 PSLGDDLFSGLKSAVELDSAFEYVSAG----SGIIAFL-IPLIAAVLGSDAIAGEKERGT 89
Query: 356 PDLLLRKPYGRTKPLISKTMMKNILGQAIYQLTVVFTLL 394
LLL +P R++ L+ K ++G L + +L
Sbjct: 90 LKLLLSRPVSRSEILLGK-----LIGLLAVGLILAIAIL 123
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase; Provisional.
Length = 958
Score = 30.8 bits (70), Expect = 2.4
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 13/140 (9%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRM---VTGDNINTARSIATKCGILKPGDDFLIL- 181
VV D R E P+AI AGI V D A +I + PGD LI
Sbjct: 415 VVVTSDNPRSEAPEAIIDQILAGIPAGARVFVISDR---AEAIRQAIWMAAPGDVILIAG 471
Query: 182 EGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAV 241
+G E + + G + D+ W R +LAR S ++ S +
Sbjct: 472 KGHETYQEI----GGRKLFFDDREWARRALLARIS--STLIKLRAAKGGSNSLQINSLPH 525
Query: 242 TGDGTNDGPALKKADVGFAM 261
G + D ++ + ++ A+
Sbjct: 526 AGAVSTDSRSVGRGELFVAL 545
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional.
Length = 410
Score = 30.3 bits (69), Expect = 2.9
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 303 LQFQLTVNVVAVIVAFIGACAVQ--DSPLKAVQMLWVNLIMDTLA 345
LQ + + +VA++VA A ++ D P A + + + L
Sbjct: 140 LQTVIALLIVALVVAIWWAGDIKPADIPFPAPGSIEWSGLFAALG 184
>gnl|CDD|233433 TIGR01482, SPP-subfamily, sucrose-phosphate phosphatase subfamily.
This model includes both the members of the SPP
equivalog model (TIGR01485), encompassing plants and
cyanobacteria, as well as those archaeal sequences which
are the closest relatives (TIGR01487). It remains to be
shown whether these archaeal sequences catalyze the same
reaction as SPP.
Length = 225
Score = 29.7 bits (67), Expect = 3.4
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 140 AIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILE-GKEFNRRVRDANGDVQ 198
AIRK + GI V +VTG+++ AR++A L D +I E G E + D+
Sbjct: 23 AIRKAESVGIPVVLVTGNSVQFARALA----KLIGTPDPVIAENGGEI--SYNEGMDDIF 76
Query: 199 QHLLDKVWPRLRVLARSSPTD--KYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKAD 256
L++ W V+A++ P K + K+ +V V G L D
Sbjct: 77 LAYLEEEWFLDIVIAKTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVD 136
Query: 257 VGFAMGIAGTDVAK 270
GF + I V K
Sbjct: 137 SGFDIHILPQGVNK 150
>gnl|CDD|185047 PRK15091, PRK15091, ABC transporter outer membrane lipoprotein;
Provisional.
Length = 251
Score = 29.7 bits (67), Expect = 3.6
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 54 GRDGNLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKA 98
GR LE F R M + NV++P +R +++A+RD+VP A
Sbjct: 27 GRSDPLEGFNRTMFN-FNYNVLDPYV---VRPVAVAWRDYVPQPA 67
>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. This
family is part of the HAD superfamily.
Length = 101
Score = 28.2 bits (64), Expect = 3.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 135 PEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILK 173
P +A+ + AG V VT N N++RS L+
Sbjct: 17 PGAAEALNALRAAGKPVVFVT--N-NSSRSREQYAKKLR 52
>gnl|CDD|226602 COG4117, COG4117, Thiosulfate reductase cytochrome B subunit
(membrane anchoring protein) [Energy production and
conversion].
Length = 221
Score = 29.4 bits (66), Expect = 4.4
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 458 SIWFITAASQVFIIQFGREAFSTKSLTLE---QW-LWCLFFGIGTLLWGQVVTTVPTRKL 513
S W I + +F++ F L L ++ + LL ++ V
Sbjct: 44 SGWRIYNNAPLFVLLFPSGLTLGGWLDLAGGRAVHFAAMWLLLANLLGYLLINLVTGHYR 103
Query: 514 PKILSW---GRGHPEEYTEAIQLGEEHKF 539
+ +Y A+ EEH F
Sbjct: 104 RRFSPLLDRAARQTRDYVFALMKREEHPF 132
>gnl|CDD|215728 pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
Length = 441
Score = 29.5 bits (67), Expect = 5.0
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 26/108 (24%)
Query: 420 TVIFNTFVFMTLFNEINARKIHGQRNVFEGFFSNPIFYSIWFITAASQVFIIQFGREAFS 479
+++ +T+ R+ G P+F +W + A + + + F A +
Sbjct: 141 SLLGAINFIVTILK----RRAPGMT-----LSRMPLF--VWSLLATAILILFAFPVLAVA 189
Query: 480 TKSLTLEQWLWCLFFGIGTLLWGQVVTTVPTRKLPKILSWGRGHPEEY 527
L L++ FF LL+ + L W GHPE Y
Sbjct: 190 LLMLLLDRNFGTSFF--DPLLY-------------QHLFWFFGHPEVY 222
>gnl|CDD|215479 PLN02887, PLN02887, hydrolase family protein.
Length = 580
Score = 29.8 bits (67), Expect = 5.0
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 218 TDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDII 276
T K VK +++ E++A+ GDG ND L+ A +G A+ G + K +D+I
Sbjct: 506 TSKGNGVKMLLNHLGVSPDEIMAI-GDGENDIEMLQLASLGVALS-NGAEKTKAVADVI 562
>gnl|CDD|202597 pfam03332, PMM, Eukaryotic phosphomannomutase. This enzyme
EC:5.4.2.8 is involved in the synthesis of the
GDP-mannose and dolichol-phosphate-mannose required for
a number of critical mannosyl transfer reactions.
Length = 219
Score = 29.3 bits (66), Expect = 5.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 364 YGRTKPLISKTMMKNILGQAIYQLTVVFTLLFVGDKLLDIPTGRG 408
Y K L S+++ N LG+ Q + F L ++ D LD+P RG
Sbjct: 48 YKGGKLLASQSI-INHLGEEKLQKLINFCLRYIAD--LDLPIKRG 89
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional.
Length = 388
Score = 29.3 bits (67), Expect = 5.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 256 DVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
DVG G A + EA IIL+D N VKA+
Sbjct: 288 DVG---GGATAERVAEAFKIILSDPN----VKAI 314
>gnl|CDD|234684 PRK00192, PRK00192, mannosyl-3-phosphoglycerate phosphatase;
Reviewed.
Length = 273
Score = 28.8 bits (65), Expect = 7.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 210 RVLARSSPTDKYTLVKGIID-SKVSDSREVVAVTGDGTNDGPALKKADVGF 259
R L DK V+ + + + D E +A+ GD ND P L+ AD+
Sbjct: 181 RFLHLLGGGDKGKAVRWLKELYRRQDGVETIAL-GDSPNDLPMLEAADIAV 230
>gnl|CDD|213906 TIGR04293, archaeo_artF, archaeosortase family protein ArtF.
Members of this protein family, ArtF, belong to the
archaeosortase/exosortase family, in which many members
associate with specific protein C-terminal putative
protein sorting domains (exosortase A with PEP-CTERM,
archaeosortase A with PGF-CTERM, etc.). This subgroup is
observed in Thermococcus gammatolerans EJ3 and
Thermococcus sp. AM4, but the gene neighborhood is not
conserved. The cognate sequence to ArtF is unknown, but
should not be ICGP-CTERM (model TIGR04288), found also
in many Pyrococcus species that lack any archaeosortase
family member.
Length = 166
Score = 28.4 bits (63), Expect = 8.1
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 419 FTVIFNTFVFMTLFNEINARKIHGQRNVFEGFFSNPIFYSIWFITAASQVFII-QFGREA 477
F++ T V++T F I +RN++E FF + Y F + + + FG E
Sbjct: 80 FSISLYTIVYLT-FPGI-------RRNLWEWFFGVSVLYLANFFRVLTSILLYHHFGEEV 131
Query: 478 FSTKSLTLEQWLWCLFFGIGTLLWGQVV 505
FS L L FG+ LL G ++
Sbjct: 132 FSFFHYILGP---ALMFGVVVLLLGDLL 156
>gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.
Length = 176
Score = 28.5 bits (64), Expect = 8.1
Identities = 8/51 (15%), Positives = 22/51 (43%)
Query: 132 PVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILE 182
P+V + +R+ + G+ + +++ + + K G+L D +
Sbjct: 77 EPFPDVVELLRRLKAKGVKLVILSNGSREAVERLLEKLGLLDLFDAVFTSD 127
>gnl|CDD|234079 TIGR02984, Sig-70_plancto1, RNA polymerase sigma-70 factor,
Planctomycetaceae-specific subfamily 1. This group of
sigma factors are members of the sigma-70 family
(TIGR02937) and are apparently found only in the
Planctomycetaceae family including the genuses Gemmata
and Pirellula (in which seven sequences are found).
Length = 189
Score = 28.4 bits (64), Expect = 8.2
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 524 PEEYTEAIQLG--EEHKFDPDA---DKKPRAGQILWIRGLTRLQT 563
PE+Y E I L E F A D+ A +LW+RGL RL+
Sbjct: 142 PEDYREVILLRHLEGLSFAEVAERMDRSEGAVSMLWVRGLARLRQ 186
>gnl|CDD|239432 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the
enolase superfamily. Enzymes of this subgroup share
three conserved carboxylate ligands for the essential
divalent metal ion (usually Mg2+), two aspartates and a
glutamate, and conserved catalytic residues, a
Lys-X-Lys motif and a conserved histidine-aspartate
dyad. Members of the MR subgroup are mandelate racemase,
D-glucarate/L-idarate dehydratase (GlucD),
D-altronate/D-mannonate dehydratase , D-galactonate
dehydratase (GalD) , D-gluconate dehydratase (GlcD), and
L-rhamnonate dehydratase (RhamD).
Length = 357
Score = 28.7 bits (65), Expect = 9.1
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
E+PV P+ + + + R +V + G+N+ T
Sbjct: 220 FEEPVPPDDLEGLARL-RQATSVPIAAGENLYT 251
>gnl|CDD|219908 pfam08568, Kinetochor_Ybp2, Uncharacterized protein family,
YAP/Alf4/glomulin. This entry contains a number of
protein families with apparently unrelated functions.
These include the YAP binding proteins of yeasts. These
are stress response and redox homeostasis proteins,
induced by hydrogen peroxide or induced in response to
alkylating agent methyl methanesulphonate (MMS). The
family includes Aberrant root formation protein 4 (Alf4)
of Arabidopsis thaliana (Mouse-ear cress), which is
required for the initiation of lateral roots independent
from auxin signalling. It may also function in
maintaining the pericycle in the mitotically competent
state needed for lateral root formation. The family
includes glomulin (FAP68), which is essential for normal
development of the vasculature and may represent a
naturally occurring ligand of the immunophilins FKBP59
and FKBP12.
Length = 625
Score = 29.0 bits (65), Expect = 9.4
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 14/78 (17%)
Query: 71 VRNVIEPMACD-------GLRTISIAYRDFVPGK-----AEINQVHIDT-EPNWDDEEYI 117
+ N + + LR + R ++P + A + D +DE +
Sbjct: 171 ILNAVTNNPTETLADDKFILRRVYGFKRPYLPPRLPSESAPDPEASSDELSKIKEDESAL 230
Query: 118 VNN-LTGLCVVGIEDPVR 134
L ++ +
Sbjct: 231 QRKLLQSFLTQLLKSYLL 248
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,879,608
Number of extensions: 3115401
Number of successful extensions: 2964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2898
Number of HSP's successfully gapped: 93
Length of query: 591
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 489
Effective length of database: 6,413,494
Effective search space: 3136198566
Effective search space used: 3136198566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)