RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8116
(591 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 358 bits (922), Expect = e-113
Identities = 134/492 (27%), Positives = 218/492 (44%), Gaps = 52/492 (10%)
Query: 41 PTKVLPRSCAFIYGRDGNLEKFTREMQDR-LVRNVIEPMACDGLRTISIAYRDFVPGKAE 99
P V+ R C ++ T ++++ L D LR +++A RD P + E
Sbjct: 519 PEGVIDR-CNYVR-VGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREE 576
Query: 100 INQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNI 159
+ + +LT + VVG+ DP R EV +I+ C+ AGI V M+TGDN
Sbjct: 577 M------VLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNK 630
Query: 160 NTARSIATKCGILKPGDDF--LILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSP 217
TA +I + GI ++ G+EF D + + R AR P
Sbjct: 631 GTAIAICRRIGIFGENEEVADRAYTGREF-----DDLPLAE---QREACRRACCFARVEP 682
Query: 218 TDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIIL 277
+ K +V+ + E+ A+TGDG ND PALKKA++G AMG +GT VAK AS+++L
Sbjct: 683 SHKSKIVEYL-----QSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVL 736
Query: 278 TDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWV 337
DDNFS+IV AV GR +Y+++ +F+++ ++ NV V+ F+ A L VQ+LWV
Sbjct: 737 ADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWV 796
Query: 338 NLIMDTLASLALATEMPTPDLLLRKPYGRTKPLISKTMMKNILGQAIYQLTVVFTL---- 393
NL+ D L + AL P D++ R P +PLIS + + Y
Sbjct: 797 NLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWW 856
Query: 394 ----------LFVGDKLLDIPTGRGAEFGSEPTQHF------TVIFNTFVFMTLFNEINA 437
+ T F + F T+ + V + + N +N+
Sbjct: 857 FMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNS 916
Query: 438 RKIHGQRNVFE-GFFSNP-IFYSIWFITAASQVFIIQ--FGREAFSTKSLTLEQWLWCLF 493
+ +++ + N + SI ++ + I+ F K+L L QWL L
Sbjct: 917 LSEN--QSLMRMPPWVNIWLLGSI-CLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLK 973
Query: 494 FGIGTLLWGQVV 505
+ + +++
Sbjct: 974 ISLPVIGLDEIL 985
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 355 bits (913), Expect = e-111
Identities = 131/530 (24%), Positives = 211/530 (39%), Gaps = 74/530 (13%)
Query: 41 PTKVLPRSCAFIYGRDGNLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEI 100
P +VL R C+ I G + ++ + + G R +
Sbjct: 521 PERVLER-CSSIL-IKGQELPLDEQWREA-FQTAYLSLGGLGERVLGFCQLYLSE----- 572
Query: 101 NQVHIDTEPNWDDEEYIVNNLT--GLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDN 158
+ + + + L+ GL V + DP R VPDA+ KC+ AGI V MVTGD+
Sbjct: 573 KDYPPGYAFDVEAMNFPTSGLSFAGL--VSMIDPPRATVPDAVLKCRTAGIRVIMVTGDH 630
Query: 159 INTARSIATKCGILKPGDDFLILEGKEFNRRVRDANGDVQQHL--------------LDK 204
TA++IA GI+ G + + V N + L +
Sbjct: 631 PITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVE 690
Query: 205 VWPRLR--VLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMG 262
V AR+SP K +V+ +VAVTGDG ND PALKKAD+G AMG
Sbjct: 691 ALRTHPEMVFARTSPQQKLVIVESC-----QRLGAIVAVTGDGVNDSPALKKADIGVAMG 745
Query: 263 IAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVN---VVAVIVAFI 319
IAG+D AK A+D+IL DDNF+SIV V GR ++D++ K + + LT N + ++
Sbjct: 746 IAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYIT 805
Query: 320 GACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGR------TKPLISK 373
+ + PL + +L++ L D S++LA E D++ +P +PL +
Sbjct: 806 VSVPL---PLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAY 862
Query: 374 TMMKNILGQAIYQLTVVFTLLFVGDKLLDIPTGRGAEFGSEPTQHF-------------- 419
+ + Q+ T FT + + G ++ + Q
Sbjct: 863 SYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQRL 922
Query: 420 -------TVIFNTFVFMTLFNEINARKIHGQRNVFE-GFFSNPIFYSIWFITAASQVFII 471
TV F + + + + + + F+ GFF N I F+
Sbjct: 923 YQQYTCYTVFFISIEMCQIADVLIRKTRR--LSAFQQGFFRNRILVIAIVFQVCIGCFLC 980
Query: 472 Q--FGREAFSTKSLTLEQWLWCLFFGIGTLLWGQVVTTVPTRKLPKILSW 519
F+ + + WL + FG+ ++ ++ R P SW
Sbjct: 981 YCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLG-VRCCPG--SW 1027
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 354 bits (911), Expect = e-111
Identities = 131/526 (24%), Positives = 218/526 (41%), Gaps = 67/526 (12%)
Query: 41 PTKVLPRSCAFIYGRDGNLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEI 100
P ++L R C+ I +G E +M++ +N + G R + +
Sbjct: 516 PERILDR-CSTIL-LNGAEEPLKEDMKEA-FQNAYLELGGLGERVLGFCHFALPE----- 567
Query: 101 NQVHIDTEPNWDDEEYIVNNLT--GLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDN 158
++ + + D+ + +L GL + + DP R VPDA+ KC+ AGI V MVTGD+
Sbjct: 568 DKYNEGYPFDADEPNFPTTDLCFVGL--MAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDH 625
Query: 159 INTARSIATKCGILKPGDDFLILEGKEFNRRVRDANGDVQQHL--------------LDK 204
TA++IA GI+ G++ + N + N + LD
Sbjct: 626 PITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDD 685
Query: 205 VWPRLR--VLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMG 262
+ V AR+SP K +V+G +VAVTGDG ND PALKKAD+G AMG
Sbjct: 686 ILHYHTEIVFARTSPQQKLIIVEGC-----QRQGAIVAVTGDGVNDSPALKKADIGVAMG 740
Query: 263 IAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGAC 322
I+G+DV+K+A+D+IL DDNF+SIV V GR ++D++ K + + LT N+ + +
Sbjct: 741 ISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFII 800
Query: 323 AVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLISKTMMKNI--- 379
PL V +L ++L D + +++LA E D++ R+P + + ++
Sbjct: 801 GNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYG 860
Query: 380 ---LGQAIYQLTVVFTLLFVGDKLLDIPTGRGAEFGSEPTQH------------------ 418
+ QA+ F +L L G+ +
Sbjct: 861 QIGMIQALGGFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQQWTYEQRKIVE 920
Query: 419 ---FTVIFNTFVFMTLFNEINARKIHGQRNVFEGFFSNPIFYSIWFITAASQVFIIQ--F 473
T F + V + + I + ++F+ N I F A F+
Sbjct: 921 FTCHTSFFISIVVVQWADLIICKTRR--NSIFQQGMKNKILIFGLFEETALAAFLSYCPG 978
Query: 474 GREAFSTKSLTLEQWLWCLFFGIGTLLWGQVVTTVPTRKLPKILSW 519
A L W + + L+ ++ + R+ P W
Sbjct: 979 TDVALRMYPLKPSWWFCAFPYSLIIFLYDEMRRFI-IRRSPG--GW 1021
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 267 bits (685), Expect = 2e-79
Identities = 82/449 (18%), Positives = 165/449 (36%), Gaps = 43/449 (9%)
Query: 58 NLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYI 117
L K + ++ + V ++I+ A GLR++++A + E W+
Sbjct: 431 ELAKASNDLSKK-VLSIIDKYAERGLRSLAVARQVVPEKTKE------SPGAPWE----- 478
Query: 118 VNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDD 177
GL + + DP R + + IR+ G+ V+M+TGD + + + G+
Sbjct: 479 ---FVGL--LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYP 533
Query: 178 FLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSRE 237
L G + + ++++ + A P KY +VK + + K
Sbjct: 534 SSALLGTHKDANLASIP-------VEELIEKADGFAGVFPEHKYEIVKKLQERK-----H 581
Query: 238 VVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYD 297
+V +TGDG ND PALKKAD+G A+ TD A+ ASDI+LT+ S I+ AV+ R ++
Sbjct: 582 IVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRAIFQ 640
Query: 298 SIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPD 357
+ + + +++ + ++ F+ + + A +L + ++ D + ++ + P
Sbjct: 641 RMKNYTIYAVSIT-IRIVFGFMLIALIWEFDFSAFMVLIIAILND-GTIMTISKDRVKPS 698
Query: 358 LLLRKPYGRTKPLISKTMMKNILGQAIYQLTVVFTLLFVGDKLLDIPTGRGAEFGSEPTQ 417
P I T + YQ + + K G +
Sbjct: 699 ---PTPDSWKLKEIFATG----VVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNH 751
Query: 418 H-FTVIFNTFVFMTLFNEINARKIHGQRNVFEGFFSNPIFYSIWFITAASQVFIIQFGRE 476
++ ++ R + F + + + + + E
Sbjct: 752 ELMGAVYLQVSIISQALIFVTRS---RSWSFVERPGALLMIAFLIAQLIATLIAVYANWE 808
Query: 477 AFSTKSLTLEQWLWCLFFGIGTLLWGQVV 505
+ + + I T V
Sbjct: 809 FAKIRGIGWGWAGVIWLYSIVTYFPLDVF 837
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 242 bits (619), Expect = 4e-70
Identities = 81/506 (16%), Positives = 166/506 (32%), Gaps = 77/506 (15%)
Query: 26 KVTVIPRKGGGYRSLPTK-----VLPRSCAFIYGRDGNLEKFTREMQDRLVRNVIEPMAC 80
KV + G R K VL E+ +N + A
Sbjct: 457 KVVAVVESPQGERITCVKGAPLFVLKTV--------EEDHPIPEEVDQA-YKNKVAEFAT 507
Query: 81 DGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRPEVPDA 140
G R++ +A + + + + G+ + DP R +
Sbjct: 508 RGFRSLGVARKR-------------------GEGSWE---ILGI--MPCMDPPRHDTYKT 543
Query: 141 IRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRDANGDVQQH 200
+ + + G++++M+TGD + AR + + G+ + L
Sbjct: 544 VCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSE------- 596
Query: 201 LLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFA 260
+ A P KY +V+ + +VA+TGDG ND P+LKKAD G A
Sbjct: 597 -VYDFVEAADGFAEVFPQHKYNVVEILQQRG-----YLVAMTGDGVNDAPSLKKADTGIA 650
Query: 261 MGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIG 320
+ +D A+ A+DI+ +I+ A+ R ++ + ++ +++ +++ I +
Sbjct: 651 VE-GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGL- 708
Query: 321 ACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKPLISKTMMKNIL 380
A+ + L ++++ + D +A+LA+A + K + +
Sbjct: 709 WIAILNRSLNIELVVFIAIFAD-VATLAIAYDNAPYSQTPVKW-----------NLPKLW 756
Query: 381 GQAIYQ--LTVVFTLLFVGDKLLDIPTGRGAEFGSEPTQHFTVIFNTFVFMTLFNEINAR 438
G ++ + V T + V G V+F + R
Sbjct: 757 GMSVLLGVVLAVGTWITVT---TMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITR 813
Query: 439 KIHGQRNVFEGFFSNPIFYSIWFITAASQVFIIQFGREAFSTKSLTLEQWLWCLFFGIGT 498
+ S + +I+ + + F I F ++ + F G
Sbjct: 814 ---ANGPFWSSIPSWQLSGAIFLVDILATCFTIW---GWFEHSDTSIVAVVRIWIFSFGI 867
Query: 499 LLWGQVVTTVPTRKLPKILSWGRGHP 524
V + + + G
Sbjct: 868 FCIMGGVYYI-LQDSVGFDNLMHGKS 892
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 120 bits (304), Expect = 6e-31
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 43/164 (26%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
I D RP + D + K + G+ + +++GD + + ++ + I
Sbjct: 130 SFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI-------------- 175
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
+ SP DK +++ K+ + V + GDG
Sbjct: 176 -----------------Q------EYYSNLSPEDKVRIIE-----KLKQNGNKVLMIGDG 207
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
ND AL ADV AMG G D++K +DIIL ++ +++ +
Sbjct: 208 VNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLI 250
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 117 bits (296), Expect = 8e-30
Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 44/174 (25%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
V+ + D +RPE +AI K + GI M+TGDN A+ +A + G+
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL-------------- 183
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
D A P +K VK + + V A+ GDG
Sbjct: 184 -----------------D------DYFAEVLPHEKAEKVKEV------QQKYVTAMVGDG 214
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 299
ND PAL +ADVG A+G AGTDVA E +DI+L ++ + V R Y
Sbjct: 215 VNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKF 267
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 116 bits (294), Expect = 2e-29
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 44/164 (26%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ + D ++ A+++ +R GI V M+TGDN +A +I+ + +
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 202
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
D V+A P K VK + +V VA GDG
Sbjct: 203 -----------------D------LVIAEVLPHQKSEEVKKLQAKEV------VAFVGDG 233
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 234 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 276
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 116 bits (294), Expect = 2e-27
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 43/164 (26%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ +EDP++ P+ I + Q++GI + M+TGD+ TA ++A GI
Sbjct: 548 LLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI-------------- 593
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
+V+A P DK +V ++ D +VA+ GDG
Sbjct: 594 -----------------K------KVVAEIMPEDKSRIVS-----ELKDKGLIVAMAGDG 625
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
ND PAL KAD+G AMG GTDVA E++ + L + I KA
Sbjct: 626 VNDAPALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKAR 668
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 116 bits (293), Expect = 2e-27
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 44/164 (26%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ + D ++ A+++ +R GI V M+TGDN +A +I+ + +
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 496
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
D V+A P K VK + +V VA GDG
Sbjct: 497 -----------------D------LVIAEVLPHQKSEEVKKLQAKEV------VAFVGDG 527
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 528 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 570
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 116 bits (292), Expect = 2e-27
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 44/164 (26%)
Query: 126 VVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKE 185
++ + D ++ A+++ +R GI V M+TGDN +A +I+ + +
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 574
Query: 186 FNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
D V+A P K VK + +V VA GDG
Sbjct: 575 -----------------D------LVIAEVLPHQKSEEVKKLQAKEV------VAFVGDG 605
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 606 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 648
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 8e-12
Identities = 67/526 (12%), Positives = 149/526 (28%), Gaps = 156/526 (29%)
Query: 36 GYRSLPTKVLPRSCAFIYGRDGN-LEKFTRE-MQDRLVRNVI-EPMACDGLRTI------ 86
Y+ + + AF+ D ++ + + + ++I A G +
Sbjct: 17 QYKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 87 --SIAYRDFVPGKAEIN------QVHIDT-EPNWDDEEYI--VNNLTGLCVVGIEDPV-R 134
+ FV IN + + +P+ YI + L V + V R
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 135 PEVPDAIRKC----QRA-GITVR-MV-TGDN---INTARSIATKC----GIL-------- 172
+ +R+ + A + + ++ +G ++ S +C I
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 173 KPGDDFLILE------------GKEFNRRVRDANGDVQQHL---------------LDKV 205
P +L+ + + ++ +Q L L V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 206 W-PRL--------RVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKAD 256
+ ++L T T K + D + + +++ D + +
Sbjct: 254 QNAKAWNAFNLSCKILL----T---TRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVK 304
Query: 257 VGFA--MGIAGTDVAKEASDI----ILTDDNFSSIVKAVM---------WGRNVYDSIAK 301
+ D+ +E + SI+ + W D +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 302 FLQFQLTVNVVAVIVAFIGACAV-QDS---PLKAVQMLWVNL-------IMDTLASLALA 350
++ L V A +V S P + ++W ++ +++ L +L
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 351 TEMPT------PDLLLRKPYGRTKPLISKTMMKNILGQAIYQLTVVFTLLFVGDKLLDIP 404
+ P P + L + K + ++I+ Y + F D +
Sbjct: 418 EKQPKESTISIPSIYLEL---KVKLENEYALHRSIVDH--YNIPKTFDS---DDLIPPYL 469
Query: 405 TG----------RGAEFGSEPTQHFTVIFNTFVFMTLFNEINARKI 440
+ E E F ++F F F+ +KI
Sbjct: 470 DQYFYSHIGHHLKNIEHP-ERMTLFRMVFLDFRFL-------EQKI 507
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 46.8 bits (112), Expect = 3e-06
Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 27/120 (22%)
Query: 22 RALMKVTVIPRKGGGYRSLPTK-----VLPRSCAFIYGRDGNLEKFTREMQDRLVRNVIE 76
R M +V+ + + L K +L C+ + +G + M + ++ V +
Sbjct: 68 RRRM--SVVVAENTEHHQLVCKGALQEILNV-CSQVR-HNGEIVPLDDIMLRK-IKRVTD 122
Query: 77 PMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLT--GLCVVGIEDPVR 134
+ GLR +++A + + + + DE ++L G + D
Sbjct: 123 TLNRQGLRVVAVATKYLPAREGDYQR---------ADE----SDLILEGY--IAFLDHHH 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 6e-05
Identities = 73/443 (16%), Positives = 128/443 (28%), Gaps = 155/443 (34%)
Query: 193 ANGDVQQHLL--DKVWPRLRVL------ARSSPTDKYTLVKGIIDSKVSDSREVVAVTGD 244
++G ++ LL + L PT+ + D + + E+V
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA-----DDEPTTPAELVG---- 62
Query: 245 GTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV--------MWGRNVY 296
+G+ V+ F ++ + G +++
Sbjct: 63 ----------KFLGY--------VSSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 297 DSIAKFLQFQLT--VNVVAVIVAFIGACAVQDSP---------LKAVQMLWVNLIMDTLA 345
AK LQ T V +I +I A + P +AV + A
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG--------EGNA 154
Query: 346 SLAL------ATEMPTPDLLLRKPYGRTKPLISKTMMKNILGQAIYQL-------TVVFT 392
L T+ +L R Y L+ + + + +L VFT
Sbjct: 155 QLVAIFGGQGNTDDYFEEL--RDLYQTYHVLVGDLI--KFSAETLSELIRTTLDAEKVFT 210
Query: 393 LLFVGDKLLDIPTGRGAE--FGSEP--------TQ--HFTVIFNTFVFMT--LFNEINAR 438
+ L+ P+ + S P Q H+ V F L + +
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 439 KIHGQRNVFEGFFSNPIFYSIWFITAASQVFIIQFGR--EAF---STKSLTLEQWLWCLF 493
H Q + +TA I E+F K++T+ LF
Sbjct: 271 TGHSQ--------------GL--VTAV----AIAETDSWESFFVSVRKAITV------LF 304
Query: 494 FGIGTLLWGQVVTTVPTRKLPKILSWGRGHPEEYTEAIQLGEEHKFDPDADKKPRAGQIL 553
F IG + P LP P ++++ E P +L
Sbjct: 305 F-IG--VRCY--EAYPNTSLP---------PSILEDSLENNE---------GVPSP--ML 339
Query: 554 WIRGLTR--LQTQVSQPVVDPHL 574
I LT+ +Q V++ + HL
Sbjct: 340 SISNLTQEQVQDYVNK--TNSHL 360
Score = 40.8 bits (95), Expect = 0.001
Identities = 85/504 (16%), Positives = 136/504 (26%), Gaps = 203/504 (40%)
Query: 52 IYGRDGNLEKFTREMQDR------LVRNVIEPMA--CDGLRTISIAYRDFVPGKAEINQV 103
I+G GN + + E++D LV ++I+ A L ++ I +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 104 --HIDTEPNWDDEEYIV--------NNLTGLC-------VVGIEDPVRPEVPDAIRKCQR 146
+ P D++Y++ + L ++G P +R +
Sbjct: 219 LENPSNTP---DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-------PGELRSYLK 268
Query: 147 AGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVW 206
G T + TA +IA D + F VR A
Sbjct: 269 -GATGH---SQGLVTAVAIAE-------TDS-----WESFFVSVRKA------------- 299
Query: 207 PRLRVL----ARSS---PTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGF 259
+ VL R P + S + DS E +G P+
Sbjct: 300 --ITVLFFIGVRCYEAYP------NTSLPPSILEDSLEN----NEGV---PS-------- 336
Query: 260 AM-GIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVN-----VVA 313
M I+ LT + V N + K ++ L VN VV+
Sbjct: 337 PMLSISN-----------LTQEQVQDYVNKT----NSHLPAGKQVEISL-VNGAKNLVVS 380
Query: 314 VIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRK----------- 362
G P +L L L LRK
Sbjct: 381 ------G------PPQ-------------SLYGLNLT---------LRKAKAPSGLDQSR 406
Query: 363 -PYGRTKPLISKTMMKNILGQAIYQLTVVF--TLLF-VGDKLLDIPTGRGAEFGSEPTQH 418
P+ K S L + F LL D + F ++ Q
Sbjct: 407 IPFSERKLKFS----NRFL-----PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ- 456
Query: 419 FTVIFNTFVFMTLFNEINARKIHGQ--RNVFEGFFSNPIFYSIW-FITAASQVFIIQFGR 475
V ++T F+ + R + G + + P+ W T I+ FG
Sbjct: 457 IPV-YDT------FDGSDLRVLSGSISERIVDCIIRLPVK---WETTTQFKATHILDFGP 506
Query: 476 EAFSTKSLTLEQWLWCLFFGIGTL 499
S G+G L
Sbjct: 507 GGAS---------------GLGVL 515
Score = 30.8 bits (69), Expect = 1.5
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 33/108 (30%)
Query: 476 EAFSTKSLTLEQWLWCLFFGIGTLLWGQVVTTVPTRKLPKILSWGRGHPEEYTEAIQLGE 535
+A+ST+ LTL G+L + V VPT S+ A QL E
Sbjct: 2 DAYSTRPLTLSH---------GSL---EHVLLVPTA------SFFI--------ASQLQE 35
Query: 536 E-HKFDPDA------DKKPRAGQILWIRGLTRLQTQVSQPVVDPHLQL 576
+ +K P+ D +P L + L + + V V Q+
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Score = 29.2 bits (65), Expect = 4.8
Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 62/196 (31%)
Query: 145 QRAGITVRMVTG----DNINTARSI---ATKCGILKPGDDFLILEGKEFNRRVRDANGDV 197
Q G M G A+ + A G F IL+ V + ++
Sbjct: 1627 QEQG----M--GMDLYKTSKAAQDVWNRADNHFKDTYG--FSILD------IVINNPVNL 1672
Query: 198 QQHLLDKVWPRLR----VLARSSPTDKYTLVKGI---IDSKVSD-----SREVVAVTGDG 245
H + R+R + + D + I I+ + + +++ T
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--- 1729
Query: 246 TNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNF--------SSIVKAVMWGRNVYD 297
PAL M A + K +I D F +++
Sbjct: 1730 QFTQPAL------TLMEKAAFEDLKSKG-LIPADATFAGHSLGEYAALA----------- 1771
Query: 298 SIAKFLQFQLTVNVVA 313
S+A + + V VV
Sbjct: 1772 SLADVMSIESLVEVVF 1787
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 42.9 bits (102), Expect = 1e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
E++ + GD ND P + A TD K SD + +D +
Sbjct: 171 EILVI-GDSNNDMPMFQLPVRKACPANA-TDNIKAVSDFV-SDYS 212
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 42.4 bits (100), Expect = 1e-04
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 24/132 (18%)
Query: 132 PVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVR 191
+R + + I +++G + D +
Sbjct: 77 KIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIV----EKDRIY----------- 121
Query: 192 DANG---DVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTND 248
N D +D + K +++ + + + ++ + GD D
Sbjct: 122 -CNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSEPN----QYIIMI-GDSVTD 175
Query: 249 GPALKKADVGFA 260
A K +D+ FA
Sbjct: 176 VEAAKLSDLCFA 187
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 42.1 bits (98), Expect = 2e-04
Identities = 19/76 (25%), Positives = 26/76 (34%)
Query: 204 KVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGI 263
KV R +DK K ++D + GD ND P + D F +G
Sbjct: 164 KVTMGSRFYTVHGNSDKGKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVVDKVFIVGS 223
Query: 264 AGTDVAKEASDIILTD 279
A+ S II
Sbjct: 224 LKHKKAQNVSSIIDVL 239
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 42.2 bits (100), Expect = 3e-04
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
+V+ V GD ND L FA+ A TD AK + +L + V +
Sbjct: 242 QVLVV-GDAENDIAMLSNFKYSFAVANA-TDSAKSHAKCVLPVSHREGAVAYL 292
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 41.7 bits (99), Expect = 4e-04
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
+V A GDG ND L G AMG A + K +D + T
Sbjct: 201 DVYAF-GDGLNDIEMLSFVGTGVAMGNA-HEEVKRVADFV-TKPV 242
>2kne_B CAM, ATPase, Ca++ transporting, plasma membrane 4; protein/peptide,
calcium pump, calmodulin, acetylation, calcium,
isopeptide bond, methylation; NMR {Homo sapiens}
Length = 28
Score = 36.6 bits (84), Expect = 5e-04
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 548 RAGQILWIRGLTRLQTQV 565
R GQILW RGL R+QTQ+
Sbjct: 2 RRGQILWFRGLNRIQTQI 19
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 40.9 bits (97), Expect = 6e-04
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
EV V GDG ND A K A+ A + KE +D + T
Sbjct: 171 EVAHV-GDGENDLDAFKVVGYKVAVAQA-PKILKENADYV-TKKE 212
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 40.6 bits (96), Expect = 7e-04
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
E ++ GDG ND L+ A +G AMG A + K A+D + T
Sbjct: 205 ETMSF-GDGGNDISMLRHAAIGVAMGQA-KEDVKAAADYV-TAPI 246
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 40.2 bits (95), Expect = 0.001
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
+V+ + GD ND +K A +G AMG A D KEA+ + T N
Sbjct: 215 DVMTL-GDQGNDLTMIKYAGLGVAMGNA-IDEVKEAAQAV-TLTN 256
Score = 30.2 bits (69), Expect = 1.6
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 135 PEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFN-RRVRDA 193
DA++ + GI V + TG + + + D + I FN +
Sbjct: 25 QATIDAVQAAKAQGIKVVLCTGRPLTGVQPYLDAMD-IDGDDQYAIT----FNGSVAQTI 79
Query: 194 NGDV-QQHLLDK 204
+G V H L
Sbjct: 80 SGKVLTNHSLTY 91
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 40.3 bits (95), Expect = 0.001
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
E + GDG ND + +DV AM + K+ + I +D
Sbjct: 218 ETICF-GDGQNDIVMFQASDVTIAMKNS-HQQLKDIATSI-CEDI 259
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 40.1 bits (94), Expect = 0.001
Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 33/159 (20%)
Query: 132 PVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGD-----DFLILEGKEF 186
+ P + + + G +++G + + + + D I +
Sbjct: 179 TLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQL----DYAFSNTVEIRDNV-- 232
Query: 187 NRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGT 246
++ +++ +K + + + ++A GDG
Sbjct: 233 ------LTDNITLPIMNA-------------ANKKQTLVDLAARLNIATENIIAC-GDGA 272
Query: 247 NDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSI 285
ND P L+ A G A V +E + F +
Sbjct: 273 NDLPMLEHAGTGIAWK--AKPVVREKIHHQINYHGFELL 309
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 39.4 bits (93), Expect = 0.002
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
E++A GDG ND P LK A +G AMG A ++ + +D + TD
Sbjct: 212 EIMAC-GDGGNDIPMLKAAGIGVAMGNA-SEKVQSVADFV-TDTV 253
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 39.4 bits (93), Expect = 0.002
Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 44/196 (22%)
Query: 116 YIVNNLTGLCVVGIEDPVRPE-VPDAIRKCQRAGITVRMVTGDNINTARSI-------AT 167
I+N + + E+ + E VP + +++ G I T S+ A
Sbjct: 75 EIINWESKEMM--YENVLPNEVVPVLYECARTNHLSILTYDGAEIVTENSLDPYVQKEAF 132
Query: 168 KCGI-LKPGDDFLILEGKEFNRRVRDANGD------VQQHLLDKVWPRLRVLARSSPT-- 218
+ ++ +DFL + + GD V+ L ++ ++ V RS P
Sbjct: 133 LNKMAIRETNDFLTDITLPVAKCL--IVGDAGKLIPVESELCIRLQGKINV-FRSEPYFL 189
Query: 219 -------DK-YTLVK-----GIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAG 265
DK +L G+ EV+A+ GDG ND +K A +G AMG A
Sbjct: 190 ELVPQGIDKALSLSVLLENIGM------TREEVIAI-GDGYNDLSMIKFAGMGVAMGNA- 241
Query: 266 TDVAKEASDIILTDDN 281
+ K+A+D I T N
Sbjct: 242 QEPVKKAADYI-TLTN 256
Score = 29.0 bits (66), Expect = 4.0
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 135 PEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLI 180
+ + + Q GI + + +G +A + + + F++
Sbjct: 25 SRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEF-GGFIL 69
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 39.2 bits (92), Expect = 0.002
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
E AV GD ND L+ A G AMG A + K +D + T N
Sbjct: 234 ETAAV-GDSLNDKSMLEAAGKGVAMGNA-REDIKSIADAV-TLTN 275
Score = 31.5 bits (72), Expect = 0.77
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 135 PEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFN-RRVRDA 193
E +A+R+ QR GI V + TG SI GI ++I N + D
Sbjct: 24 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI----KTWVIS----ANGAVIHDP 75
Query: 194 NGDV-QQHLLDK 204
G + +DK
Sbjct: 76 EGRLYHHETIDK 87
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 38.7 bits (91), Expect = 0.003
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
+VVA+ G +D P ++ A +G AMG A K +D + T N
Sbjct: 220 DVVAI-GHQYDDLPMIELAGLGVAMGNA-VPEIKRKADWV-TRSN 261
Score = 28.7 bits (65), Expect = 5.3
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 135 PEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFN-RRVRDA 193
DAI ++ GI V +VT + +A+ IA + D LI + + +
Sbjct: 26 QATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKL----DAKLIT----HSGAYIAEK 77
Query: 194 NGDV-QQHLLDK 204
+ +
Sbjct: 78 IDAPFFEKRISD 89
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 38.6 bits (91), Expect = 0.003
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
E+V GD ND ++A + AM A + KEASDI+ T N
Sbjct: 208 EIVVF-GDNENDLFMFEEAGLRVAMENA-IEKVKEASDIV-TLTN 249
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 38.3 bits (90), Expect = 0.004
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
E++A+ GD ND ++ A VG A+ A KE ++ + T N
Sbjct: 216 EIMAI-GDQENDIAMIEYAGVGVAVDNA-IPSVKEVANFV-TKSN 257
Score = 28.6 bits (65), Expect = 4.6
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 135 PEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLI 180
P V +AI + G+ V + TG + + + +P D+ I
Sbjct: 25 PAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQP-GDYCI 69
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 37.5 bits (88), Expect = 0.008
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
VVA+ GD ND LK A FAMG A + K+ + TDDN
Sbjct: 209 NVVAI-GDSGNDAEMLKMARYSFAMGNA-AENIKQIARYA-TDDN 250
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 37.2 bits (87), Expect = 0.010
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
EV GD ND L+ A + +A+ A A+
Sbjct: 229 EVCCF-GDNLNDIEMLQNAGISYAVSNA-RQEVIAAAKHT-CAPY 270
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 37.3 bits (87), Expect = 0.011
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
++A GDG ND LK A +AM A K A++ N
Sbjct: 246 HLMAF-GDGGNDIEMLKLAKYSYAMANA-PKNVKAAANYQ-AKSN 287
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 36.8 bits (86), Expect = 0.011
Identities = 21/159 (13%), Positives = 43/159 (27%), Gaps = 33/159 (20%)
Query: 132 PVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDD-----FLILEGKEF 186
P+ + + + V +G + D ++
Sbjct: 75 PLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHL----DAAFSNTLIVENDA-- 128
Query: 187 NRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGT 246
NG V H++ K ++ + + V GDG
Sbjct: 129 ------LNGLVTGHMMFS-------------HSKGEMLLVLQRLLNISKTNTLVV-GDGA 168
Query: 247 NDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSI 285
ND K A + A +V K+ + + + + + I
Sbjct: 169 NDLSMFKHAHIKIAFN--AKEVLKQHATHCINEPDLALI 205
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 36.7 bits (85), Expect = 0.014
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVY 296
+A GD ND L+ G+ + A T AK ++I TD +S G +
Sbjct: 229 RAIAF-GDSGNDVRMLQTVGNGYLLKNA-TQEAKNLHNLI-TDSEYS-------KG--IT 276
Query: 297 DSIAKFLQF 305
+++ K + F
Sbjct: 277 NTLKKLIGF 285
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 35.7 bits (83), Expect = 0.020
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDD 280
V+A GD ND L +A G A +V +E
Sbjct: 147 RVIAA-GDSYNDTTMLSEAHAGILFH-APENVIREFPQFPAVHT 188
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 34.9 bits (81), Expect = 0.039
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAM-GIAGTDVAKEASDIILTD 279
+++ + GDG D A AD G K+ + +TD
Sbjct: 173 KIIMI-GDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITD 215
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 34.7 bits (80), Expect = 0.064
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 33/159 (20%)
Query: 132 PVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDD-----FLILEGKEF 186
P+ PE+P+ + G V + +G + + + + D I+ GK
Sbjct: 178 PLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSL----DYAQSNTLEIVSGK-- 231
Query: 187 NRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGT 246
G V ++ K ++ + + VAV GDG
Sbjct: 232 ------LTGQVLGEVVSA-------------QTKADILLTLAQQYDVEIHNTVAV-GDGA 271
Query: 247 NDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSI 285
ND + A +G A + + + +
Sbjct: 272 NDLVMMAAAGLGVAYH--AKPKVEAKAQTAVRFAGLGGV 308
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 34.0 bits (78), Expect = 0.12
Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 25/155 (16%)
Query: 132 PVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKP-GDDFLILEGKEFNRRV 190
+ P +R +R G +V+G +A + + ++ I++G
Sbjct: 256 ELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGT------ 309
Query: 191 RDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGP 250
G V ++D+ K T ++ + VAV GDG ND
Sbjct: 310 --LTGRVVGPIIDR-------------AGKATALREFAQRAGVPMAQTVAV-GDGANDID 353
Query: 251 ALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSI 285
L A +G A +E +D L+ ++
Sbjct: 354 MLAAAGLGIAF--NAKPALREVADASLSHPYLDTV 386
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 33.7 bits (78), Expect = 0.12
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDN 281
+ +A GDG ND L A G M A + ++ + N
Sbjct: 227 DCIAF-GDGMNDAEMLSMAGKGCIMANAHQRLKDLHPELEVIGSN 270
Score = 31.0 bits (71), Expect = 0.95
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 135 PEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFN-RRVRDA 193
P + ++ GI TG + I GI ++I N RV D+
Sbjct: 41 PYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGI----RSYMIT----SNGARVHDS 92
Query: 194 NGDV-QQHLLDK 204
+G H LD+
Sbjct: 93 DGQQIFAHNLDR 104
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 33.3 bits (77), Expect = 0.13
Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 33/159 (20%)
Query: 132 PVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLI---LEGKEFNR 188
+ I++ + G V +V+G I K G+ D+ L
Sbjct: 76 TPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL-----DYAFANRLI------ 124
Query: 189 RVRDA--NGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGT 246
V+D GDV+ +L + K +++ I + + + VAV GDG
Sbjct: 125 -VKDGKLTGDVEGEVLKE-------------NAKGEILEKIAKIEGINLEDTVAV-GDGA 169
Query: 247 NDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSI 285
ND KKA + A + KE +DI + + I
Sbjct: 170 NDISMFKKAGLKIAFC--AKPILKEKADICIEKRDLREI 206
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 33.6 bits (76), Expect = 0.17
Identities = 36/210 (17%), Positives = 62/210 (29%), Gaps = 25/210 (11%)
Query: 89 AYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPVRP--EVPDAIRKCQR 146
Y+++ G V YI E +RP EV + +
Sbjct: 180 VYQEWYLGSKLYEDVEKKIARTTFKTGYIYQ----------EIILRPVDEVKVLLNDLKG 229
Query: 147 AGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRDANGDVQQHLLDKVW 206
AG + + TG G+L + I + + N Q L K
Sbjct: 230 AGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDV---LEAENMYPQARPLGKPN 286
Query: 207 PRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKAD---VGFAMGI 263
P + A + + +V V GD D + +K +G G+
Sbjct: 287 PFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIV-GDSLADLLSAQKIGATFIGTLTGL 345
Query: 264 AGTDVAKEAS----DIILTDDNFSSIVKAV 289
G D A E D ++ ++ + +
Sbjct: 346 KGKDAAGELEAHHADYVI--NHLGELRGVL 373
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 32.7 bits (75), Expect = 0.22
Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 24/135 (17%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNR 188
I + + D +R AG +VT N IA G+ + + + +
Sbjct: 89 IRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGV----QHLIATDPEYRDG 144
Query: 189 RVRDANGDVQQHLLD---KVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDG 245
R G ++ KV R+ G+ + D E D
Sbjct: 145 RY---TGRIEGTPSFREGKV-VRVNQWLAG---------MGL---ALGDFAESYFY-SDS 187
Query: 246 TNDGPALKKADVGFA 260
ND P L+ A
Sbjct: 188 VNDVPLLEAVTRPIA 202
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 33.0 bits (75), Expect = 0.24
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 204 KVWPRLRVLARSSPTDKYTLVKGIID--SKVSDSREVVAVTGDGTNDGPALKKADVGFAM 261
+ R + DK V + ++R V + GD ND P + D+ +
Sbjct: 161 EWTHGGRFYHAAKGADKGRAVARLRALWPDPEEARFAVGL-GDSLNDLPLFRAVDLAVYV 219
Query: 262 GIAGTDVAKEASDIILTDDN 281
G ++ T
Sbjct: 220 G-----RGDPPEGVLATPAP 234
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 32.7 bits (74), Expect = 0.25
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 234 DSREVVAVTGDGTNDGPALKKADVGFAMG 262
+ + GDG ND P L+ D +
Sbjct: 207 KRPTTLGL-GDGPNDAPLLEVMDYAVIVK 234
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 31.0 bits (71), Expect = 0.81
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNF 282
+ + GD ND + + G + A D ++
Sbjct: 180 QTLVC-GDSGNDIGLFETSARGVIVRNA-QPELLHWYDQWGDSRHY 223
Score = 28.0 bits (63), Expect = 7.9
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 131 DPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILE-GKEFNRR 189
D E +R + TG + ++AR + + G+++P D+ + G E
Sbjct: 17 DQQALEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEP--DYWLTAVGSE---- 70
Query: 190 VRDANGDVQ--QHLLDKVWPR 208
+ G Q L + W R
Sbjct: 71 IYHPEGLDQHWADYLSEHWQR 91
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
NYSGXRC, target 9265J, lyase, structural genomics,
PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Length = 455
Score = 30.4 bits (69), Expect = 1.8
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
E+ + P+ D +RA TV+ TG++ +
Sbjct: 247 WEECLSPDDTDGFALIKRAHPTVKFTTGEHEYS 279
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 28.9 bits (64), Expect = 4.6
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 138 PDAIRKCQRAGIT----VRMVTGDNINTARSIA-TKCGILKPGD--DFLILEGKEFNRRV 190
+ K + V VT N A I L G DF + + + +
Sbjct: 305 ATTMSKLLSVDMPFENVVEAVT---RNPASVIRLDMENRLDVGQRADFTVFDLVDADLEA 361
Query: 191 RDANGDV 197
D+NGDV
Sbjct: 362 TDSNGDV 368
>3kdr_A HK97 family phage portal protein; PS structural genomics, protein
structure initiative, midwest for structural genomics;
2.90A {Corynebacterium diphtheriae}
Length = 310
Score = 28.8 bits (64), Expect = 5.0
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 13/116 (11%)
Query: 179 LILEGKEFNRRVRDANGDVQQ--HLLDKVW----PRLRVLARSSPTDKYTLVKGIIDSKV 232
L+ G RD +G H+ W +RV ++ + + GI +
Sbjct: 71 LLFNGVACWALDRDESGTCIGAIHIPLDTWQIEENTVRVNGKAVDPMEVCIFVGIHGGLL 130
Query: 233 SDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKA 288
+ + E L +A A A ++ ++ L+ D+ I+
Sbjct: 131 THASETFTDAR-------NLVRAAARVAQNPAALIELRQTNNAQLSPDDVDRIING 179
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp
superfamily, ligase,biosynthetic protein; HET: MSE ADP;
2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Length = 377
Score = 28.7 bits (65), Expect = 5.3
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 363 PYGRTKPLISKTMMKNILGQAIYQ 386
+ L+ +M N+LG+ +
Sbjct: 302 SLPNSIELLKPAVMMNLLGKDLDL 325
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold,
acid sugar dehydratase, D-araninonate, isomera; HET: EPE
D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A
3dfh_A 3s47_A 3gy1_A
Length = 401
Score = 28.7 bits (65), Expect = 5.8
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
IED + P + + R+ +V + G+ N
Sbjct: 232 IEDILPPNQTEWLDNI-RSQSSVSLGLGELFNN 263
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase,
mandelate racemase subgroup, enzyme function initia EFI;
1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Length = 400
Score = 28.7 bits (65), Expect = 6.5
Identities = 4/33 (12%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
EDP++ + ++ + A + + + +
Sbjct: 241 HEDPIKMDSLSSLTRY-AAVSPAPISASETLGS 272
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S
genomics, national institute of allergy and infectious
DISE (niaid); 1.70A {Francisella tularensis subsp}
Length = 219
Score = 28.0 bits (63), Expect = 6.8
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 220 KYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKK--ADVGFAMGIAGT-DVAKEASDII 276
+ + +K EV+A+ GDG D +K A A + S +
Sbjct: 149 CDSKLSAFDKAKGLIDGEVIAI-GDGYTDYQLYEKGYATKFIAYMEHIEREKVINLSKYV 207
Query: 277 LTD 279
+
Sbjct: 208 ARN 210
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold,
mannonate dehydratase, D-mannonate, lyase; HET: CS2;
1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A
2qjn_A* 2qjm_A*
Length = 418
Score = 28.3 bits (64), Expect = 6.9
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
+ED E +A R R + G+ NT
Sbjct: 251 LEDCTPAENQEAFRLV-RQHTVTPLAVGEIFNT 282
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein;
enolase, dehydratase, enzyme function initiative, EFI,
lyase; 1.80A {Enterobacter SP}
Length = 422
Score = 28.4 bits (64), Expect = 7.3
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
IED + P+ + + R V + G+ N
Sbjct: 253 IEDILPPQQSAWLEQV-RQQSCVPLALGELFNN 284
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural
genomics, protein structure initiative, PSI, nysgrc;
1.80A {Zymomonas mobilis}
Length = 403
Score = 28.4 bits (64), Expect = 7.7
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
E+ P P +++ + I + + +G+ I +
Sbjct: 240 YEEINTPLNPRLLKEA-KKKIDIPLASGERIYS 271
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein;
enolase, Mg ION, PSI-2, NYSGXRC, structural genomics;
2.90A {Rubrobacter xylanophilus dsm 9941}
Length = 410
Score = 28.4 bits (64), Expect = 7.7
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
+E+P PE DA+ + R + + G+N+ T
Sbjct: 241 LEEPTPPENLDALAEV-RRSTSTPICAGENVYT 272
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium
binding site, lyase; 1.95A {Ralstonia pickettii} PDB:
3rra_A
Length = 405
Score = 28.4 bits (64), Expect = 7.8
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
IE+PV E + + A + + G+ + +
Sbjct: 209 IEEPVLAEQAETYARL-AAHTHLPIAAGERMFS 240
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme
function initiative, lyase; 1.45A {Caulobacter
crescentus} PDB: 4fi4_A 3thu_A
Length = 425
Score = 28.4 bits (64), Expect = 8.0
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
+ED V E R R T + G+
Sbjct: 258 LEDSVPAENQAGFRLI-RQHTTTPLAVGEIFAH 289
>2o56_A Putative mandelate racemase; dehydratase, structural genomics,
protein structure initiati 2; 2.00A {Salmonella
typhimurium}
Length = 407
Score = 28.4 bits (64), Expect = 8.1
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
E+PV P P +++ + + + G+ I
Sbjct: 246 YEEPVMPLNPAQMKQV-ADKVNIPLAAGERIYW 277
>2poz_A Putative dehydratase; octamer, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Length = 392
Score = 28.0 bits (63), Expect = 8.7
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
+E+P P A++ I + + G+ + T
Sbjct: 230 VEEPCDPFDNGALKVI-SEQIPLPIAVGERVYT 261
>2gl5_A Putative dehydratase protein; structural genomics, protein
structure initiati nysgxrc; 1.60A {Salmonella
typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Length = 410
Score = 28.0 bits (63), Expect = 8.7
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
E+P+ P D ++K T+ + TG+ T
Sbjct: 249 YEEPIHPLNSDNMQKV-SRSTTIPIATGERSYT 280
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate
dehydratase related protein, enzyme funct intitiative,
lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis}
PDB: 3tw9_A 3twa_A 3twb_A*
Length = 440
Score = 28.1 bits (63), Expect = 9.8
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT 161
+EDPV PE + ++ R + + G+
Sbjct: 271 LEDPVAPENTEWLKML-RQQSSTPIAMGELFVN 302
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding,
glyoxylate bypass, nucleotide-binding, protein
phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157}
PDB: 3lcb_A* 3lc6_A*
Length = 578
Score = 27.9 bits (62), Expect = 10.0
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 380 LGQAIYQLTVVFTLLFVGDKLLDIPTGRGAEFGSEPTQHFTVIFNTFVFMTLFNEINARK 439
G AI QL +F GD L FG T+H V+F + + E+N R
Sbjct: 441 YGNAIRQL--AAANIFPGDMLFK-------NFGV--TRHGRVVFYDYDEICYMTEVNFRD 489
Query: 440 IHGQRNVFEGFFSNPIFYSIWFITAASQVFIIQFGR 475
I R + S P W+ + VF +F
Sbjct: 490 IPPPRYPEDELASEP-----WYSVSPGDVFPEEFRH 520
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,280,802
Number of extensions: 587635
Number of successful extensions: 1526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1480
Number of HSP's successfully gapped: 97
Length of query: 591
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 492
Effective length of database: 3,937,614
Effective search space: 1937306088
Effective search space used: 1937306088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)