RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8116
(591 letters)
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 143 bits (362), Expect = 9e-41
Identities = 69/178 (38%), Positives = 95/178 (53%), Gaps = 16/178 (8%)
Query: 117 IVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGD 176
I ++ TG DP R EV +I+ C+ AGI V M+TGDN TA +I + GI +
Sbjct: 5 ICSDKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENE 64
Query: 177 DF--LILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSD 234
+ G+EF+ + R AR P+ K +V+ +
Sbjct: 65 EVADRAYTGREFDDL--------PLAEQREACRRACCFARVEPSHKSKIVEYLQ-----S 111
Query: 235 SREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWG 292
E+ A+TGDG ND PALKKA++G AMG +GT VAK AS+++L DDNFS+IV AV G
Sbjct: 112 YDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEG 168
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 149 bits (378), Expect = 6e-40
Identities = 53/280 (18%), Positives = 103/280 (36%), Gaps = 34/280 (12%)
Query: 250 PALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTV 309
P A + + + +AK+ + + S+ GR +Y+++ +F+++ ++
Sbjct: 193 PEGLPAVITTCLALGTRRMAKKNAIV-------RSLPSVETLGRAIYNNMKQFIRYLISS 245
Query: 310 NVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKP 369
NV V+ F+ A L VQ+LWVNL+ D L + AL P D++ R P +P
Sbjct: 246 NVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEP 305
Query: 370 LISKTMMKNILGQAIYQLTVVFTLLFVGDKLLDIPTGRGAEFGS---------------- 413
LIS + + Y + G G +
Sbjct: 306 LISGWLFFRYMAIGGYVGAATVGAAAWW--FMYAEDGPGVTYHQLTHFMQCTEDHPHFEG 363
Query: 414 ------EPTQHFTVIFNTFVFMTLFNEINARKIHGQRNVFEGFFSNPIFYSIWFITAASQ 467
E + T+ + V + + N +N+ + Q + + N ++ +
Sbjct: 364 LDCEIFEAPEPMTMALSVLVTIEMCNALNSLSEN-QSLMRMPPWVNIWLLGSICLSMSLH 422
Query: 468 VFIIQ--FGREAFSTKSLTLEQWLWCLFFGIGTLLWGQVV 505
I+ F K+L L QWL L + + +++
Sbjct: 423 FLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEIL 462
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 98.6 bits (245), Expect = 5e-25
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 44/174 (25%)
Query: 116 YIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPG 175
++ + TG G D ++ A+++ +R GI V M+TGDN +A +I+ + +
Sbjct: 5 AVIFDKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVI 64
Query: 176 DDFLILEGKEFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDS 235
+ P K VK + +
Sbjct: 65 AEV-------------------------------------LPHQKSEEVKKL------QA 81
Query: 236 REVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
+EVVA GDG ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 82 KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 134
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 89.1 bits (220), Expect = 9e-20
Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 34/229 (14%)
Query: 71 VRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIE 130
++ + +A + + + + + D E+ I + E
Sbjct: 169 LKGALWTLAQEVYQEWYLGSKLYE-----------------DVEKKIARTTFKTGYIYQE 211
Query: 131 DPV--RPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNR 188
+ EV + + AG + + TG G+L + I +
Sbjct: 212 IILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLE 271
Query: 189 RVRDANGDVQQHLLDK-VWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTN 247
+ + + Y + I +K + V + GD
Sbjct: 272 AENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNK-----DDVFIVGDSLA 326
Query: 248 DGPALKKAD---VGFAMGIAGTDVAKE----ASDIILTDDNFSSIVKAV 289
D + +K +G G+ G D A E +D ++ ++ + +
Sbjct: 327 DLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVI--NHLGELRGVL 373
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 78.1 bits (191), Expect = 6e-17
Identities = 26/228 (11%), Positives = 62/228 (27%), Gaps = 26/228 (11%)
Query: 74 VIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGIEDPV 133
+++ A + E P+ EE V + +
Sbjct: 24 IMKTFAPPEWMALKDGVLSKTLSIKEGVGRMFGLLPSSLKEEI-------TSFVLEDAKI 76
Query: 134 RPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRDA 193
R + + I +++G + ++
Sbjct: 77 REGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHASFDNDY------- 129
Query: 194 NGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALK 253
+D + K +++ ++S+ + + + GD D A K
Sbjct: 130 ------IHIDWPHSCKGTCSNQCGCCKPSVIH-----ELSEPNQYIIMIGDSVTDVEAAK 178
Query: 254 KADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAK 301
+D+ FA + +E + L +F I K + + V + +
Sbjct: 179 LSDLCFARDY-LLNECREQNLNHLPYQDFYEIRKEIENVKEVQEWLQN 225
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 62.0 bits (149), Expect = 2e-11
Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 46/202 (22%)
Query: 133 VRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRD 192
+ + +AIR+ + GI + +VTG+ + A + + G P +R+
Sbjct: 20 IHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAISYKKKRIFL 79
Query: 193 ANGDVQQHLLDKVWPRL--RVLARSSPTDKYTLVKGIIDSKVSDSREV------------ 238
A+ D + L +++ R + + P + LV V RE+
Sbjct: 80 ASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINELNLNLVAVD 139
Query: 239 -------------------------------VAVTGDGTNDGPALKKADVGFAMGIAGTD 267
VA GDG ND A K A+ A
Sbjct: 140 SGFAIHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYKVAVAQA-PK 198
Query: 268 VAKEASDIILTDDNFSSIVKAV 289
+ KE +D + + +A+
Sbjct: 199 ILKENADYVTKKEYGEGGAEAI 220
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 58.3 bits (140), Expect = 3e-10
Identities = 13/126 (10%), Positives = 33/126 (26%), Gaps = 13/126 (10%)
Query: 15 HFQLSAARALMKVTVIPRKGGGY-----RSLPTKVLPRSCAFIYGRDGNLEKFTREMQDR 69
++ + P ++L R C+ I + +
Sbjct: 95 EISFNSTNKYQLSIHEREDNPQSHVLVMKGAPERILDR-CSSILVQGKEIPLDKEMQDAF 153
Query: 70 LVRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEEYIVNNLTGLCVVGI 129
+N + G R + + GK + + D+ + L + ++ +
Sbjct: 154 --QNAYLELGGLGERVLGFCQLNLPSGKFPRGF-----KFDTDELNFPTEKLCFVGLMSM 206
Query: 130 EDPVRP 135
D
Sbjct: 207 IDHHHH 212
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 51.1 bits (121), Expect = 8e-08
Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 44/203 (21%)
Query: 130 EDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKP---GDDFLILEGKEF 186
+ + + ++IR ++ G+TV +++G+ I ++ GI P + ++ +
Sbjct: 18 DRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPVFGENGGIMFDNDGS 77
Query: 187 NRRVRDANGDVQ-----------QHLLDKVWPRLRVLARSSPTDKYTLVKGIIDS----- 230
++ G + + +L W P D + K
Sbjct: 78 IKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIF 137
Query: 231 ------------------------KVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGT 266
S + + V GD ND P + A T
Sbjct: 138 YSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVRKACPANA-T 196
Query: 267 DVAKEASDIILTDDNFSSIVKAV 289
D K SD + I +
Sbjct: 197 DNIKAVSDFVSDYSYGEEIGQIF 219
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 206
Score = 50.2 bits (119), Expect = 1e-07
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVM 290
V GD ND L +A G A +V +E + + + +
Sbjct: 146 YRVIAAGDSYNDTTMLSEAHAGILFH-APENVIREFPQFPAV-HTYEDLKREFL 197
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 48.0 bits (113), Expect = 9e-07
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 41 PTKVLPRSCAFIYGRDGNLEKFTREMQDRLVRNVIE-PMACDGLRTISIAYRDFVPGKAE 99
P V+ R C ++ T ++++++ + E D LR +++A RD P + E
Sbjct: 158 PEGVIDR-CNYVR-VGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREE 215
Query: 100 INQVHIDTEPNWDDEEYIVNNLTGLCVVGI 129
+ + +LT + VVG+
Sbjct: 216 M------VLDDSSRFMEYETDLTFVGVVGM 239
>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 210
Score = 44.8 bits (104), Expect = 9e-06
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 243 GDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
GDG ND KKA + A + KE +DI + + I+K +
Sbjct: 165 GDGANDISMFKKAGLKIAFC--AKPILKEKADICIEKRDLREILKYI 209
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 44.9 bits (105), Expect = 9e-06
Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 20/156 (12%)
Query: 125 CVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGK 184
+ + P + + + + Q + V +++G + +A+K I +
Sbjct: 75 LIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPA---TNVFANRL 131
Query: 185 EFNRRVRDANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGD 244
+F A D Q + V ++ K + ++ GD
Sbjct: 132 KFYFNGEYAGFDETQPTAES--------------GGKGKVIKLLKEKFHFKKIIM--IGD 175
Query: 245 GTNDGPALKKADVGFAMG-IAGTDVAKEASDIILTD 279
G D A AD G K+ + +TD
Sbjct: 176 GATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITD 211
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 44.9 bits (105), Expect = 1e-05
Identities = 34/263 (12%), Positives = 79/263 (30%), Gaps = 20/263 (7%)
Query: 56 DGNLEKFTREMQDRLVRNVIEPMACDGLRTISIAYRDFVPGKAEINQVHIDTEPNWDDEE 115
DG + + + G++ + + + + ++ + ++
Sbjct: 10 DGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGA 69
Query: 116 YIVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINT------ARSIATKC 169
+ + L + V + K ++ + ++ +A
Sbjct: 70 LVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHY 129
Query: 170 GILKPGDDFLILEGKEFNRRVRDANGDVQQHL--LDKVWPRLRVLARSSPTDKYTLVKGI 227
LKP D+ ++ F + + + + L + S ++ G+
Sbjct: 130 HRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGL 189
Query: 228 IDSKVSDSR--------EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTD 279
+ + V GD ND LK A FAMG A + K+ + D
Sbjct: 190 HKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNA-AENIKQIARYATDD 248
Query: 280 DNFSSIVKAVMWGRNVYDSIAKF 302
+N + + + V D+ F
Sbjct: 249 NNHEGALNVI---QAVLDNTYPF 268
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 43.4 bits (101), Expect = 4e-05
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
E AV GD ND L+ A G AMG A + K +D + ++ + +
Sbjct: 231 ETAAV-GDSLNDKSMLEAAGKGVAMGNA-REDIKSIADAVTLTNDEHGVAHMM 281
Score = 28.0 bits (61), Expect = 2.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 135 PEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGI 171
E +A+R+ QR GI V + TG SI GI
Sbjct: 21 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI 57
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 43.1 bits (100), Expect = 5e-05
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 237 EVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVM 290
+ V V GD ND L FA+ A TD AK + +L + V ++
Sbjct: 224 DQVLVVGDAENDIAMLSNFKYSFAVANA-TDSAKSHAKCVLPVSHREGAVAYLL 276
Score = 32.3 bits (72), Expect = 0.13
Identities = 13/92 (14%), Positives = 27/92 (29%)
Query: 117 IVNNLTGLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGD 176
++ + G V + V E DAI++ G V + TG + S + + K
Sbjct: 13 LLIDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNF 72
Query: 177 DFLILEGKEFNRRVRDANGDVQQHLLDKVWPR 208
+ + ++
Sbjct: 73 YGMPGVYINGTIVYDQIGYTLLDETIETDVYA 104
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 42.3 bits (98), Expect = 1e-04
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 236 REVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
E + GD ND ++ A VG A+ A KE ++ + + + A+
Sbjct: 213 PEEIMAIGDQENDIAMIEYAGVGVAVDNA-IPSVKEVANFVTKSNLEDGVAFAI 265
Score = 32.6 bits (73), Expect = 0.10
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 133 VRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNRRVRD 192
+ P V +AI + G+ V + TG + + + +PG D+ I ++ D
Sbjct: 22 ISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPG-DYCITYNGALVQKAAD 80
Query: 193 ANGDVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSD 234
+ Q L + L L+R + + L + + + D
Sbjct: 81 GSTVAQTALSYDDYRFLEKLSREVGSHFHALDRTTLYTANRD 122
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 41.4 bits (96), Expect = 1e-04
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 219 DKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILT 278
K + II E ++ GDG ND L+ A +G AMG A + K A+D +
Sbjct: 186 TKQKGIDEIIRHFGIKLEETMSF-GDGGNDISMLRHAAIGVAMGQA-KEDVKAAADYVTA 243
Query: 279 DDNFSSIVKAV 289
+ I KA+
Sbjct: 244 PIDEDGISKAM 254
Score = 26.8 bits (58), Expect = 6.7
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 133 VRPEVPDAIRKCQRAGITVRMVTGDNINTARSIA 166
+ +A+ G+ + + TG +++
Sbjct: 20 IPSSTIEALEAAHAKGLKIFIATGRPKAIINNLS 53
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 40.7 bits (94), Expect = 3e-04
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 236 REVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAV 289
+E + V GD ND ++A + AM A + KEASDI+ +N S + +
Sbjct: 206 KEEIVVFGDNENDLFMFEEAGLRVAMENA-IEKVKEASDIVTLTNNDSGVSYVL 258
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/81 (24%), Positives = 28/81 (34%)
Query: 196 DVQQHLLDKVWPRLRVLARSSPTDKYTLVKGIIDSKVSDSREVVAVTGDGTNDGPALKKA 255
+V KV R +DK K ++D + GD ND P +
Sbjct: 156 EVLVEGGFKVTMGSRFYTVHGNSDKGKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVV 215
Query: 256 DVGFAMGIAGTDVAKEASDII 276
D F +G A+ S II
Sbjct: 216 DKVFIVGSLKHKKAQNVSSII 236
>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus
influenzae, HI1679 [TaxId: 727]}
Length = 177
Score = 36.2 bits (83), Expect = 0.004
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 239 VAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILT 278
A GD + D PA FA+ A K A D +L+
Sbjct: 99 TAYIGDDSVDLPAFAACGTSFAVADA-PIYVKNAVDHVLS 137
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 31.2 bits (69), Expect = 0.26
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 234 DSREVVAVTGDGTNDGPALKKADVGFAMG 262
+ + GDG ND P L+ D +
Sbjct: 202 KRPTTLGL-GDGPNDAPLLEVMDYAVIVK 229
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 31.1 bits (69), Expect = 0.28
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 231 KVSDSREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDI 275
++ V GD ND + + G + A ++
Sbjct: 173 HLAMEPSQTLVCGDSGNDIGLFETSARGVIVRNAQPELLHWYDQW 217
Score = 28.8 bits (63), Expect = 1.4
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 129 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEGKEFNR 188
+ D E +R + TG + ++AR + + G+++P D+ +
Sbjct: 15 VGDQQALEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEP--DYWLTAVGSEIY 72
Query: 189 RVRDANGDVQQHLLDKVWPRL 209
+ +L + +
Sbjct: 73 HPEGLDQHWADYLSEHWQRDI 93
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 29.9 bits (67), Expect = 0.70
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 115 EYIVNNLTGLCVVGIEDPVRPEVPDAIRK-CQRAGITVRMVTGDNINTARSIATKCGILK 173
+Y+ + ++ IED + D + +R G V++V D T + GI +
Sbjct: 139 DYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQLVGDDFFVTN-TDYLARGIQE 197
Query: 174 PGDDFLILEGKEFN 187
+ ++++ +
Sbjct: 198 GAANSILIKVNQIG 211
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 28.3 bits (63), Expect = 2.6
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 128 GIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPG 175
++ + EV +++ G T+ +VT + + AR +++ L G
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHE-MGFARHVSSHVIFLHQG 225
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 27.6 bits (61), Expect = 4.2
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 128 GIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPGDDFLILEG--KE 185
G+ + EV + I+K + G T+ +V + A +A +L+ G ++LEG E
Sbjct: 169 GLAPILVSEVFEVIQKINQEGTTILLVEQN-ALGALKVAHYGYVLETGQ--IVLEGKASE 225
Query: 186 F--NRRVRDA 193
N VR A
Sbjct: 226 LLDNEMVRKA 235
>d1lrza3 d.108.1.4 (A:166-244,A:310-412) Methicillin resistance
protein FemA {Staphylococcus aureus [TaxId: 1280]}
Length = 182
Score = 27.1 bits (59), Expect = 5.2
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 141 IRKCQRAGITVRMVTGDNI 159
+K ++ G+ VR ++ + +
Sbjct: 18 TKKVKKNGVKVRFLSEEEL 36
>d1b25a2 d.152.1.1 (A:1-210) Formaldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 210
Score = 26.6 bits (59), Expect = 8.0
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 245 GTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQ 304
GT L++A G+ + AK+ I + DDN S + +WG+ +++ + +
Sbjct: 94 GTMASVHLRRA--GYD-ALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKE 150
Query: 305 F 305
Sbjct: 151 I 151
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 8.3
Identities = 4/39 (10%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 137 VPDAIRKCQRAGITVRMVTGDNINTARSIATKCGILKPG 175
+ + + + + GIT ++ ++ + ++ G
Sbjct: 189 IFNHVLELKAKGITFLIIEHR-LDIVLNYIDHLYVMFNG 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,232,275
Number of extensions: 106565
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 38
Length of query: 591
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 501
Effective length of database: 1,171,896
Effective search space: 587119896
Effective search space used: 587119896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.0 bits)