BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy812
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NST|A Chain A, The Sulfotransferase Domain Of Human Haparin Sulfate N-
DeacetylaseN-Sulfotransferase
Length = 325
Score = 237 bits (604), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 155/229 (67%), Gaps = 17/229 (7%)
Query: 117 GLDWYMDFFPLAKNSTPQYLFEKSATYFDGDLVPKRTQALLPQAKLVTILISPIKRAYSW 176
G+DWYM+FFP+ N+T + FEKSA YFD ++ P+R ALLP+AK++TILI+P RAYSW
Sbjct: 97 GIDWYMEFFPIPSNTTSDFYFEKSANYFDSEVAPRRAAALLPKAKVLTILINPADRAYSW 156
Query: 177 YQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNRCLTPGKYAQHLERWLIYYPPQQL 236
YQH ++H D +AL ++F+++ITA A ++ L+NRCL PG YA H+ERWL Y Q+
Sbjct: 157 YQHQRAHDDPVALKYTFHEVITAGSDASSKLRALQNRCLVPGWYATHIERWLSAYHANQI 216
Query: 237 HIIDGDQLKSNPIEVMDSLQKFLKITPVFDYSSHL----------------RTKCLGRSK 280
++DG L++ P +VMD +QKFL +T DY L +TKCLG+SK
Sbjct: 217 LVLDGKLLRTEPAKVMDMVQKFLGVTNTIDYHKTLAFDPKKGFWCQLLEGGKTKCLGKSK 276
Query: 281 GRKYPRMDLRSYRFLQRYYLSYNTALVKLLKKLGIRSVPQWLKDDLSNT 329
GRKYP MDL S FL+ YY +N L KLL K+G +++P WL++DL NT
Sbjct: 277 GRKYPEMDLDSRAFLKDYYRDHNIELSKLLYKMG-QTLPTWLREDLQNT 324
>pdb|1T8U|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
pdb|1T8U|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
Length = 272
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 30/237 (12%)
Query: 86 RAWKHIWRV--KVTSTEEYPHLRPARLRRGNSNGLDWYMDFFPLAKNSTPQYLFEKSATY 143
RA RV V + PH R GL WY D P + Q EK+ +Y
Sbjct: 32 RALLEFLRVHPDVRAVGAEPHF----FDRSYDKGLAWYRDLMPRTLDG--QITMEKTPSY 85
Query: 144 FDGDLVPKRTQALLPQAKLVTILISPIKRAYSWYQHTKSHGDQLALNHSFYDIITANESA 203
F P R A+ KL+ ++ P+ RA S Y T S + +F + N +A
Sbjct: 86 FVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIP---TFESLTFKNRTA 142
Query: 204 PKPIKDLRNRCLTPGKYAQHLERWLIYYPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITP 263
+ D + G YA+HLE WL ++P +Q+ + G++L S+P + +Q FL +
Sbjct: 143 G--LIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKR 200
Query: 264 V-------FDYSSHL----------RTKCLGRSKGRKYPRMDLRSYRFLQRYYLSYN 303
+ F+ + R CLG++KGR +P +D R L+ +Y +N
Sbjct: 201 IITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFN 257
>pdb|1T8T|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
pdb|1T8T|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
Length = 271
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 30/237 (12%)
Query: 86 RAWKHIWRV--KVTSTEEYPHLRPARLRRGNSNGLDWYMDFFPLAKNSTPQYLFEKSATY 143
RA RV V + PH R GL WY D P + Q EK+ +Y
Sbjct: 31 RALLEFLRVHPDVRAVGAEPHF----FDRSYDKGLAWYRDLMPRTLDG--QITMEKTPSY 84
Query: 144 FDGDLVPKRTQALLPQAKLVTILISPIKRAYSWYQHTKSHGDQLALNHSFYDIITANESA 203
F P R A+ KL+ ++ P+ RA S Y T S + +F + N +A
Sbjct: 85 FVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIP---TFESLTFKNRTA 141
Query: 204 PKPIKDLRNRCLTPGKYAQHLERWLIYYPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITP 263
+ D + G YA+HLE WL ++P +Q+ + G++L S+P + +Q FL +
Sbjct: 142 G--LIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKR 199
Query: 264 V-------FDYSSHL----------RTKCLGRSKGRKYPRMDLRSYRFLQRYYLSYN 303
+ F+ + R CLG++KGR +P +D R L+ +Y +N
Sbjct: 200 IITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFN 256
>pdb|1VKJ|A Chain A, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|B Chain B, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|C Chain C, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
Length = 285
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 38/221 (17%)
Query: 115 SNGLDWYMDFFPLAKNSTPQYLFEKSATYFDGDLVPKRTQALLPQAKLVTILISPIKRAY 174
S GL WY+ P + S Q EK+ YF VP+R ++ P +L+ IL P +R
Sbjct: 75 SQGLGWYLTQMPFS--SPHQLTVEKTPAYFTSPKVPERIHSMNPTIRLLLILRDPSERVL 132
Query: 175 SWYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNR---------CLTPGKYAQHLE 225
S Y Q+ NH + ++ P PI+DL R L Y H+
Sbjct: 133 SDYT-------QVLYNH-----LQKHKPYP-PIEDLLMRDGRLNLDYKALNRSLYHAHML 179
Query: 226 RWLIYYPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITPVFDYSSHL-------------- 271
WL ++P +HI+DGD+L +P + +++FLK++P + S+
Sbjct: 180 NWLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSG 239
Query: 272 RTKCLGRSKGRKYPRMDLRSYRFLQRYYLSYNTALVKLLKK 312
+ +CL SKGR +P++D + L Y+ N KL+ +
Sbjct: 240 KDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFFKLVGR 280
>pdb|3UAN|A Chain A, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
pdb|3UAN|B Chain B, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
Length = 269
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 38/221 (17%)
Query: 115 SNGLDWYMDFFPLAKNSTPQYLFEKSATYFDGDLVPKRTQALLPQAKLVTILISPIKRAY 174
S GL WY+ P + S Q EK+ YF VP+R ++ P +L+ IL P +R
Sbjct: 59 SQGLGWYLTQMPFS--SPHQLTVEKTPAYFTSPKVPERIHSMNPTIRLLLILRDPSERVL 116
Query: 175 SWYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNR---------CLTPGKYAQHLE 225
S Y Q+ NH + ++ P PI+DL R L Y H+
Sbjct: 117 SDYT-------QVLYNH-----LQKHKPYP-PIEDLLMRDGRLNLDYKALNRSLYHAHML 163
Query: 226 RWLIYYPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITPVFDYSSHL-------------- 271
WL ++P +HI+DGD+L +P + +++FLK++P + S+
Sbjct: 164 NWLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSG 223
Query: 272 RTKCLGRSKGRKYPRMDLRSYRFLQRYYLSYNTALVKLLKK 312
+ +CL SKGR +P++D + L Y+ N KL+ +
Sbjct: 224 KDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFFKLVGR 264
>pdb|3BD9|A Chain A, Human 3-O-Sulfotransferase Isoform 5 With Bound Pap
Length = 280
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 21/211 (9%)
Query: 115 SNGLDWYMDFFPLAKNSTPQYL-FEKSATYFDGDLVPKRTQALLPQAKLVTILISPIKRA 173
G++WY P S PQ + EKS YF + VP+R + KL+ I+ P RA
Sbjct: 67 GKGIEWYRKKMPF---SYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTTRA 123
Query: 174 YSWYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNRCLTPGKYAQHLERWLIYYPP 233
S Y ++ N ++Y + + + + Y +HLERWL Y+P
Sbjct: 124 ISDYTQVLEGKERK--NKTYYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPI 181
Query: 234 QQLHIIDGDQLKSNPIEVMDSLQKFLKITP-VFDYS--------------SHLRTKCLGR 278
+Q H++DGD+L + P+ + ++KFL + P + Y+ + + KCL
Sbjct: 182 EQFHVVDGDRLITEPLPELQLVEKFLNLPPRISQYNLYFNATRGFYCLRFNEIFNKCLAG 241
Query: 279 SKGRKYPRMDLRSYRFLQRYYLSYNTALVKL 309
SKGR +P +D L++++ +N ++
Sbjct: 242 SKGRIHPEVDPSVITKLRKFFHPFNQKFYQI 272
>pdb|1ZRH|A Chain A, Crystal Structure Of Human Heparan Sulfate Glucosamine
3-O- Sulfotransferase 1 In Complex With Pap
Length = 274
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 32/218 (14%)
Query: 115 SNGLDWYMDFFPLAKNSTP-QYLFEKSATYFDGDLVPKRTQALLPQAKLVTILISPIKRA 173
S+GL WY+ P S P Q EK+ YF VP+R ++ P +L+ IL P +R
Sbjct: 64 SHGLGWYLSQMPF---SWPHQLTVEKTPAYFTSPKVPERVYSMNPSIRLLLILRDPSERV 120
Query: 174 YS-----WYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNRCLTPGKYAQHLERWL 228
S +Y H + H ++ + + + K L NR L Y H++ WL
Sbjct: 121 LSDYTQVFYNHMQKHKPYPSIE----EFLVRDGRLNVDYKAL-NRSL----YHVHMQNWL 171
Query: 229 IYYPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITPVFDYSSHL--------------RTK 274
++P + +HI+DGD+L +P + +++FLK++P + S+ R +
Sbjct: 172 RFFPLRHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGRDR 231
Query: 275 CLGRSKGRKYPRMDLRSYRFLQRYYLSYNTALVKLLKK 312
CL SKGR +P++D + L Y+ N +L+ +
Sbjct: 232 CLHESKGRAHPQVDPKLLNKLHEYFHEPNKKFFELVGR 269
>pdb|3RNL|A Chain A, Crystal Structure Of Sulfotransferase From
Alicyclobacillus Acidocaldarius
Length = 311
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 158 PQAKLVTILISPIKRAYSWYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRN----- 212
P AK++ L +P+ RA+S Y H L + ++ ES K + +R
Sbjct: 108 PDAKILIXLRNPVDRAFSAYXH---------LVRDERETLSFRESLAKEEERIRQHYEPL 158
Query: 213 ---RCLTPGKYAQHLERWLIYYPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITPVFDYSS 269
R + G YA ++R+L + +Q+ +I ++ +P++V+ FL ++ F +
Sbjct: 159 WYYRAV--GLYAAQVKRYLDVFGREQVKVILFEEFARDPVQVVRDCCAFLGVSTDFVPDT 216
Query: 270 HLRTKCLGRSKGR 282
+R G K R
Sbjct: 217 SIRHNESGVPKSR 229
>pdb|3MX1|A Chain A, The Structure Of Giy-Yig Endonuclease R.Eco29ki
Length = 235
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 1 MMLNKQFAKQPHLYENQTQLEVDMMLNKQFAKT--HGIPVDSGYSIAPHHSGVYPVHEPL 58
M NK+F + H+Y N + LE+ + F+ T H +P + A ++ Y H L
Sbjct: 21 MGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVYALYYTGHYSL 80
Query: 59 YTAWKHIWRV 68
Y + I R+
Sbjct: 81 YDEYSRINRL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,774,982
Number of Sequences: 62578
Number of extensions: 455933
Number of successful extensions: 836
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 13
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)