RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy812
         (332 letters)



>gnl|CDD|192929 pfam12062, HSNSD, heparan sulfate-N-deacetylase.  This family of
           proteins is are heparan sulfate N-deacetylase enzymes.
           This protein is found in eukaryotes. This proteinenzyme
           is often found associated with pfam00685.
          Length = 487

 Score =  147 bits (373), Expect = 2e-40
 Identities = 55/81 (67%), Positives = 63/81 (77%)

Query: 10  QPHLYENQTQLEVDMMLNKQFAKTHGIPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVK 69
           QPHL+ N + LE  M LNK FA  HGIP D GY++APHHSGVYPVHE LY AWK +W +K
Sbjct: 367 QPHLFHNFSYLEEQMALNKLFALEHGIPTDYGYAVAPHHSGVYPVHEQLYEAWKKVWNIK 426

Query: 70  VTSTEEYPHLRPARLRRAWKH 90
           VTSTEEYPHL+PAR RR + H
Sbjct: 427 VTSTEEYPHLKPARYRRGFIH 447


>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain. 
          Length = 254

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 43/230 (18%), Positives = 66/230 (28%), Gaps = 52/230 (22%)

Query: 103 PHLRPARLRRGNSNGLDWYMDFFPLAKNSTPQYLFEKS-----ATYFDGDLVPKRTQALL 157
           PHL     R   S  L+WY  F        P  L          T+    L+PK      
Sbjct: 36  PHLFNPHNR---SPFLEWYDLFVIFDVAEGPVRLNALPSPRIIKTHLPLHLLPK--SLWD 90

Query: 158 PQAKLVTILISPIKRAYSWYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNRCLTP 217
           P AK++ ++ +P   A S+Y   +      A    F  +            D  N  +  
Sbjct: 91  PNAKIIYLVRNPKDVAVSYYHFFRMAKILKAPGTPFEFVE-----------DFLNGKVNC 139

Query: 218 GKYAQHLERWLIYYPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITP------------VF 265
           G Y  H++ W    PP  +  +  + LK +P   +  + +FL I               F
Sbjct: 140 GSYFDHVKGWWKLRPPGNILFLRYEDLKKDPRGEIKKIAEFLGIPLTEEELDKIVKHLSF 199

Query: 266 DY----------------SSHLRTKCLGRSKGRKYPRMDLRSYRFLQRYY 299
           +                  S    K L            +         Y
Sbjct: 200 ENMKGNPCLNYSKLPKHEVSPFFRKGLVGD---WKNYFTVEQAEKFDEIY 246


>gnl|CDD|217626 pfam03584, Herpes_ICP4_N, Herpesvirus ICP4-like protein N-terminal
           region.  The immediate-early protein ICP4 (infected-cell
           polypeptide 4) is required for efficient transcription
           of early and late viral genes and is thus essential for
           productive infection. ICP4 is a large phosphoprotein
           that binds DNA in a sequence specific manner as a
           homodimer. ICP4 represses transcription from LAT, ICP4
           and ORF-P that have high-affinity a ICP4 binding site
           that spans the transcription initiation site. ICP4
           proteins have two highly conserved regions, this family
           contains the N-terminal region that contains sites for
           DNA binding and homodimerisation.
          Length = 175

 Score = 29.2 bits (66), Expect = 2.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 160 AKLVTILISPIKRAYSWYQHTKSHGDQLALNH 191
             LV ++  P + A +W Q+ K  G   ALNH
Sbjct: 65  EALVRLIYEPDRDAMAWLQNPKLSGTDQALNH 96


>gnl|CDD|236331 PRK08667, PRK08667, hydrogenase membrane subunit; Validated.
          Length = 644

 Score = 28.9 bits (65), Expect = 4.2
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 56  EPLYTAWKHIWRVKVTSTEEYPHLRPARLRRAWKHIWRVKVTSTEEYPHLRPARL 110
           EPL   ++ I+R ++ +  EY   + A  ++    I  +K    EEY +L PARL
Sbjct: 554 EPLVQIFRLIYRTRIYNEREYEDNQQAIFKQGKSEIHLLKF--FEEYLYLPPARL 606


>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
          Length = 1419

 Score = 28.5 bits (63), Expect = 6.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 298 YYLSYNTALVKLLKKLGIRSVPQWLKDDLSNTLP 331
           Y L YN AL+   KK G  S+ Q L+D  +N +P
Sbjct: 529 YALGYNAALLIDHKKTGYMSIIQNLEDSYANWIP 562


>gnl|CDD|179150 PRK00876, nadE, NAD synthetase; Reviewed.
          Length = 326

 Score = 28.0 bits (63), Expect = 6.5
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 79  LRPARLRRAWKHIWRVKVTSTEEYPHLRP 107
           L P ++ R ++ I   + T+   Y H  P
Sbjct: 290 LTPEQVERVYRDIEAKRRTT--RYLHAPP 316


>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
           Holliday junction resolvase [DNA replication,
           recombination, and repair].
          Length = 436

 Score = 28.0 bits (63), Expect = 9.0
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 245 KSNP-IEVMDSLQKFLKITPVFDYSSHLR------TKCLGRSKGRKYP 285
           KSN     +++     K     +   HLR       K LG  KG KYP
Sbjct: 339 KSNAVYTAINAALADAKEGGSLEVPKHLRNAPTKLMKELGYGKGYKYP 386


>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
          Length = 1352

 Score = 28.2 bits (63), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 160 AKLVTILISPIKRAYSWYQHTKSHGDQLALNH 191
           A LV +L +P + A  W Q+ K  G   AL+ 
Sbjct: 498 AALVRLLYTPDREAMGWLQNPKLTGPDQALDQ 529


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,325,905
Number of extensions: 1649176
Number of successful extensions: 1490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1489
Number of HSP's successfully gapped: 13
Length of query: 332
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 235
Effective length of database: 6,635,264
Effective search space: 1559287040
Effective search space used: 1559287040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)