RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy812
(332 letters)
>d1nsta_ c.37.1.5 (A:) Heparan sulfate
N-deacetylase/N-sulfotransferase domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 301
Score = 140 bits (352), Expect = 7e-40
Identities = 111/232 (47%), Positives = 153/232 (65%), Gaps = 17/232 (7%)
Query: 111 RRGNSNGLDWYMDFFPLAKNSTPQYLFEKSATYFDGDLVPKRTQALLPQAKLVTILISPI 170
G+DWYM+FFP+ N+T + FEKSA YFD ++ P+R ALLP+AK++TILI+P
Sbjct: 70 GHNYHKGIDWYMEFFPIPSNTTSDFYFEKSANYFDSEVAPRRAAALLPKAKVLTILINPA 129
Query: 171 KRAYSWYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNRCLTPGKYAQHLERWLIY 230
RAYSWYQH ++H D +AL ++F+++ITA A ++ L+NRCL PG YA H+ERWL
Sbjct: 130 DRAYSWYQHQRAHDDPVALKYTFHEVITAGSDASSKLRALQNRCLVPGWYATHIERWLSA 189
Query: 231 YPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITPVFDYSSHL----------------RTK 274
Y Q+ ++DG L++ P +VMD +QKFL +T DY L +TK
Sbjct: 190 YHANQILVLDGKLLRTEPAKVMDMVQKFLGVTNTIDYHKTLAFDPKKGFWCQLLEGGKTK 249
Query: 275 CLGRSKGRKYPRMDLRSYRFLQRYYLSYNTALVKLLKKLGIRSVPQWLKDDL 326
CLG+SKGRKYP MDL S FL+ YY +N L KLL K+G +++P WL++DL
Sbjct: 250 CLGKSKGRKYPEMDLDSRAFLKDYYRDHNIELSKLLYKMG-QTLPTWLREDL 300
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 99.6 bits (247), Expect = 4e-25
Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 22/232 (9%)
Query: 95 KVTSTEEYPHLRPARLRRGNSNGLDWYMDFFPLAKNSTPQYLFEKSATYFDGDLVPKRTQ 154
V + E H S GL WY+ P +S Q EK+ YF VP+R
Sbjct: 30 DVAAAENEVH--FFDWEEHYSQGLGWYLTQMP--FSSPHQLTVEKTPAYFTSPKVPERIH 85
Query: 155 ALLPQAKLVTILISPIKRAYSWYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNRC 214
++ P +L+ IL P +R S Y + Q + + + + +L +
Sbjct: 86 SMNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGR----LNLDYKA 141
Query: 215 LTPGKYAQHLERWLIYYPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITPVFDYSSHL--- 271
L Y H+ WL ++P +HI+DGD+L +P + +++FLK++P + S+
Sbjct: 142 LNRSLYHAHMLNWLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNK 201
Query: 272 -----------RTKCLGRSKGRKYPRMDLRSYRFLQRYYLSYNTALVKLLKK 312
+ +CL SKGR +P++D + L Y+ N KL+ +
Sbjct: 202 TKGFYCLRDSGKDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFFKLVGR 253
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 98.8 bits (245), Expect = 1e-24
Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 28/235 (11%)
Query: 95 KVTSTEEYPHLRPARLRRGNSNGLDWYMDFFPLAKNSTPQYLFEKSATYFDGDLVPKRTQ 154
V + PH R GL WY D P + Q EK+ +YF P R
Sbjct: 42 DVRAVGAEPHF----FDRSYDKGLAWYRDLMP--RTLDGQITMEKTPSYFVTREAPARIS 95
Query: 155 ALLPQAKLVTILISPIKRAYSWYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNRC 214
A+ KL+ ++ P+ RA S Y T S +F + N +A + D
Sbjct: 96 AMSKDTKLIVVVRDPVTRAISDYTQTLSKRPD---IPTFESLTFKNRTAG--LIDTSWSA 150
Query: 215 LTPGKYAQHLERWLIYYPPQQLHIIDGDQLKSNPIEVMDSLQKFLKITPVFD-------- 266
+ G YA+HLE WL ++P +Q+ + G++L S+P + +Q FL + +
Sbjct: 151 IQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNK 210
Query: 267 ---------YSSHLRTKCLGRSKGRKYPRMDLRSYRFLQRYYLSYNTALVKLLKK 312
R CLG++KGR +P +D R L+ +Y +N ++
Sbjct: 211 TKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGH 265
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
smegmatis [TaxId: 1772]}
Length = 265
Score = 44.0 bits (102), Expect = 1e-05
Identities = 24/222 (10%), Positives = 52/222 (23%), Gaps = 27/222 (12%)
Query: 69 KVTSTEEYPHLRPARLRRAWKHIWRVKVTSTEEYPHLRPARLRRGNSNGLDWYMDFFPLA 128
+E+ P W V L P + + + D+
Sbjct: 28 VAGEPQEFFQYLPNTSMSPQPREWFADVEDQSILRLLDPLIEGKPDLAPATIWRDYIQTV 87
Query: 129 KNSTPQYLFEKSATYFDGDLVPKRT---------------QALLPQAKLVTILIS-PIKR 172
+ K LV + + L+ I + +
Sbjct: 88 GRTPNGVWGGKLMWNQTPLLVQRAKDLPDRSGSGLLSAIRDVVGSDPVLIHIHRPDVVSQ 147
Query: 173 AYSWYQHTKSHGDQLALNHSFYDIITANESAPKPIKDLRNRCLTPGKYAQHLERWLIYYP 232
A S+++ ++ + + + E W ++
Sbjct: 148 AVSFWRAVQTRVWRGRPDPVRDA---------RAEYHAGAIAHVITMLRAQEEGWRAWFT 198
Query: 233 --PQQLHIIDGDQLKSNPIEVMDSLQKFLKITPVFDYSSHLR 272
+ +D L N EV+ ++ + L P L
Sbjct: 199 EENVEPIDVDYPYLWRNLTEVVGTVLEALGQDPRLAPKPVLE 240
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId:
9913]}
Length = 225
Score = 27.8 bits (61), Expect = 1.8
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 32 KTHGIPVDSGYSIAPHHSGVYPVHE--PLYTAWKHI 65
+T GI +DSG + P++E L A +
Sbjct: 1 RTTGIVLDSGDG----VTHNVPIYEGYALPHAIMRL 32
>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea
batatas) [TaxId: 4120]}
Length = 341
Score = 26.7 bits (58), Expect = 3.9
Identities = 9/39 (23%), Positives = 10/39 (25%)
Query: 28 KQFAKTHGIPVDSGYSIAPHHSGVYPVHEPLYTAWKHIW 66
Q A H + GY VH H W
Sbjct: 82 YQQALVHCAYCNGGYDQVNFPDQEIQVHNSWLFFPFHRW 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.428
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,321,681
Number of extensions: 63173
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 9
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)