BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8120
         (463 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|322800175|gb|EFZ21260.1| hypothetical protein SINV_05156 [Solenopsis invicta]
          Length = 534

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/163 (59%), Positives = 122/163 (74%), Gaps = 3/163 (1%)

Query: 253 SQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLA 312
           S PS+ +    +S++T++   +       ++  ++KPPYSYVALIAMAI +++HKRATL+
Sbjct: 156 SAPSTPTVAATDSTATAVATGTNNGINGGSSATNSKPPYSYVALIAMAIQDSKHKRATLS 215

Query: 313 EIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMF 372
           EIY YI  KFPYFEKNKKGWQNSIRHNLSLN+CFVKV +EG GERKGN+WTL  ++EDMF
Sbjct: 216 EIYAYITAKFPYFEKNKKGWQNSIRHNLSLNECFVKVPREGGGERKGNFWTLDPQYEDMF 275

Query: 373 ENGNYRRRRRMKRPVRTPSYNAKPYLGDMYA--HQNLIGRDIF 413
           ENGNYRRRRRMKRP R   Y   P  GD ++  H +L  R+IF
Sbjct: 276 ENGNYRRRRRMKRPYRNAPYK-PPLFGDPFSTTHMHLGSRNIF 317


>gi|307194451|gb|EFN76749.1| Forkhead box protein L2 [Harpegnathos saltator]
          Length = 359

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 123/165 (74%), Gaps = 5/165 (3%)

Query: 253 SQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDS--NKPPYSYVALIAMAINNNEHKRAT 310
           S PS+ S P   + +T+   +S  ++ + T   S  +KPP+SYVALIAMAI ++  KRAT
Sbjct: 32  STPSAPSTPNAAADNTASATASGTNNANGTNGSSANSKPPFSYVALIAMAIQHSAQKRAT 91

Query: 311 LAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHED 370
           L+EIY YI  KFPYFEKNKKGWQNSIRHNLSLN+CFVKV +EG GERKGN+WTL  ++ED
Sbjct: 92  LSEIYAYITAKFPYFEKNKKGWQNSIRHNLSLNECFVKVPREGGGERKGNFWTLDPQYED 151

Query: 371 MFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYA--HQNLIGRDIF 413
           MFENGNYRRRRRMKRP R   Y+ KP  GD ++  H +L  R+IF
Sbjct: 152 MFENGNYRRRRRMKRPYRNAPYH-KPLFGDPFSTTHVHLGPRNIF 195


>gi|242011099|ref|XP_002426293.1| Forkhead box protein I1, putative [Pediculus humanus corporis]
 gi|212510361|gb|EEB13555.1| Forkhead box protein I1, putative [Pediculus humanus corporis]
          Length = 386

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 118/175 (67%), Gaps = 10/175 (5%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYF-EKNKKGWQNSIRHNLSLNDCF 346
           KPPYSYVA+I+MAI + + KRATL EIYN+I  KFPYF ++ KKGWQNSIRHNLSLNDCF
Sbjct: 135 KPPYSYVAMISMAITSKKEKRATLNEIYNFITTKFPYFRDQEKKGWQNSIRHNLSLNDCF 194

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRT--PSYNAKPYLGDMY-A 403
           +KV ++G GE+KGNYW L      MFEN NY+RR+RM+RP++T  P+Y  K + GD Y +
Sbjct: 195 IKVPRQGGGEKKGNYWILTMDPSKMFENNNYKRRKRMRRPLKTSAPTY-PKSFFGDPYPS 253

Query: 404 HQNLIGRDIFSATA-SPFSSRNTWSGPS----PNNVYYPSCVRALPPTSPYSFPP 453
           H     R+++SA   + + S   W+ P+    P    Y +C    P  +PY+  P
Sbjct: 254 HLQFRHRNLYSAARYTSYGSPTPWNLPTNISNPQIPGYTNCQVRSPGLNPYAQLP 308


>gi|170050073|ref|XP_001859188.1| forkhead protein/ forkhead protein domain [Culex quinquefasciatus]
 gi|167871657|gb|EDS35040.1| forkhead protein/ forkhead protein domain [Culex quinquefasciatus]
          Length = 384

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 121/169 (71%), Gaps = 10/169 (5%)

Query: 278 SPSSTTTDSN-KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSI 336
           SP+ ++ +SN KPPYSYVALIAMAI N++ KRATL+EIY YI  +FPYFEKNKKGWQNSI
Sbjct: 135 SPTGSSRNSNAKPPYSYVALIAMAIQNSQMKRATLSEIYGYITSRFPYFEKNKKGWQNSI 194

Query: 337 RHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKP 396
           RHNLSLN+CFVK+ +EG GERKGNYWTL  ++EDMFENGNY+RRRRMKRP RT  Y+   
Sbjct: 195 RHNLSLNECFVKIPREGGGERKGNYWTLDPQYEDMFENGNYKRRRRMKRPYRTGHYSKM- 253

Query: 397 YLGDMYAHQ--NLIGRDIFS----ATASPFSSRNTWSGPSPNNVYYPSC 439
             GD Y     N   R +F+     T   + +  TW  P+P    Y SC
Sbjct: 254 -FGDSYMANAGNFTHRPVFAQSPYQTYPRYDTGTTWM-PTPQLGSYTSC 300


>gi|345496591|ref|XP_001603061.2| PREDICTED: hypothetical protein LOC100119258 [Nasonia vitripennis]
          Length = 532

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 103/142 (72%), Gaps = 12/142 (8%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALI MAI +++ ++ TL+EIY +I   FP+FEKNKKGWQNSIRHNLSLN+CFV
Sbjct: 246 KPPYSYVALITMAIKSSKMQKLTLSEIYAFIQTNFPFFEKNKKGWQNSIRHNLSLNECFV 305

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMY----- 402
           KV ++G GERKGNYWT+  +  +MFENGN+RRR+RMKR     +Y   PY   +Y     
Sbjct: 306 KVPRDGGGERKGNYWTIHPEAGEMFENGNWRRRKRMKR-----TYRNAPYPKGLYGEPFQ 360

Query: 403 -AHQNL-IGRDIFSATASPFSS 422
            AH +L  GR +F+ +   +S+
Sbjct: 361 SAHVHLGAGRTLFAHSPPAYST 382


>gi|340729697|ref|XP_003403133.1| PREDICTED: hypothetical protein LOC100644911 [Bombus terrestris]
          Length = 469

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 111/140 (79%), Gaps = 3/140 (2%)

Query: 277 SSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSI 336
           +S S++ + S KPPYSYVALIAMAI ++  KRATL+EIY YI  +FPYF+KNKKGWQNSI
Sbjct: 171 TSGSNSDSASKKPPYSYVALIAMAIQHSAQKRATLSEIYAYITARFPYFQKNKKGWQNSI 230

Query: 337 RHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKP 396
           RHNLSLN+CFVKV ++G GERKGN+WTL  ++ DMFENGNYRRRRRMKRP R   Y+ KP
Sbjct: 231 RHNLSLNECFVKVPRDGGGERKGNFWTLDPQYADMFENGNYRRRRRMKRPYRNAPYH-KP 289

Query: 397 YLGDMYA--HQNLIGRDIFS 414
             GD ++  H +L  R++F 
Sbjct: 290 LFGDPFSPTHVHLGPRNLFG 309


>gi|350402252|ref|XP_003486421.1| PREDICTED: hypothetical protein LOC100742971 [Bombus impatiens]
          Length = 469

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 111/140 (79%), Gaps = 3/140 (2%)

Query: 277 SSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSI 336
           +S S++ + S KPPYSYVALIAMAI ++  KRATL+EIY YI  +FPYF+KNKKGWQNSI
Sbjct: 171 TSGSNSDSASKKPPYSYVALIAMAIQHSAQKRATLSEIYAYITARFPYFQKNKKGWQNSI 230

Query: 337 RHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKP 396
           RHNLSLN+CFVKV ++G GERKGN+WTL  ++ DMFENGNYRRRRRMKRP R   Y+ KP
Sbjct: 231 RHNLSLNECFVKVPRDGGGERKGNFWTLDPQYADMFENGNYRRRRRMKRPYRNAPYH-KP 289

Query: 397 YLGDMYA--HQNLIGRDIFS 414
             GD ++  H +L  R++F 
Sbjct: 290 LFGDPFSPTHVHLGPRNLFG 309


>gi|270008307|gb|EFA04755.1| hypothetical protein TcasGA2_TC030577 [Tribolium castaneum]
          Length = 298

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 106/149 (71%), Gaps = 6/149 (4%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI ++  KRATL+EIY YI  KFPYFE+NKKGWQNSIRHNLSLN+CFV
Sbjct: 123 KPPYSYVALIAMAIQSSHSKRATLSEIYAYITAKFPYFERNKKGWQNSIRHNLSLNECFV 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQN- 406
           KV +EG GERKGNYWTL  ++EDMFENGNYRRRRRMKRP R+     K + GD       
Sbjct: 183 KVPREGGGERKGNYWTLDPQYEDMFENGNYRRRRRMKRPYRSAQPYPKAFFGDTLGQHGL 242

Query: 407 -LIGRDIFSATASPFSSRN----TWSGPS 430
            L  R IF+    P         +W GPS
Sbjct: 243 PLASRSIFTPPTYPPPYSRYDAASWLGPS 271


>gi|157111107|ref|XP_001651393.1| forkhead protein/ forkhead protein domain [Aedes aegypti]
 gi|108878539|gb|EAT42764.1| AAEL005741-PA [Aedes aegypti]
          Length = 325

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/101 (75%), Positives = 87/101 (86%), Gaps = 1/101 (0%)

Query: 277 SSPSSTTTDSN-KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           +SP+S   +SN KPPYSYVALIAMAI N+  KRATL+EIY YI  +FPYFEKNKKGWQNS
Sbjct: 77  ASPTSGNRNSNTKPPYSYVALIAMAIQNSSMKRATLSEIYGYITSRFPYFEKNKKGWQNS 136

Query: 336 IRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           IRHNLSLN+CFVK+ +EG GERKGNYWTL  ++EDMFENGN
Sbjct: 137 IRHNLSLNECFVKIPREGGGERKGNYWTLDPQYEDMFENGN 177


>gi|189237449|ref|XP_974828.2| PREDICTED: similar to AGAP008606-PA [Tribolium castaneum]
          Length = 333

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 106/149 (71%), Gaps = 6/149 (4%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI ++  KRATL+EIY YI  KFPYFE+NKKGWQNSIRHNLSLN+CFV
Sbjct: 123 KPPYSYVALIAMAIQSSHSKRATLSEIYAYITAKFPYFERNKKGWQNSIRHNLSLNECFV 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQN- 406
           KV +EG GERKGNYWTL  ++EDMFENGNYRRRRRMKRP R+     K + GD       
Sbjct: 183 KVPREGGGERKGNYWTLDPQYEDMFENGNYRRRRRMKRPYRSAQPYPKAFFGDTLGQHGL 242

Query: 407 -LIGRDIFSATASPFSSRN----TWSGPS 430
            L  R IF+    P         +W GPS
Sbjct: 243 PLASRSIFTPPTYPPPYSRYDAASWLGPS 271


>gi|118193705|gb|ABK76647.1| forkhead box subgroup L [Aedes aegypti]
          Length = 361

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/101 (75%), Positives = 87/101 (86%), Gaps = 1/101 (0%)

Query: 277 SSPSSTTTDSN-KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           +SP+S   +SN KPPYSYVALIAMAI N+  KRATL+EIY YI  +FPYFEKNKKGWQNS
Sbjct: 113 ASPTSGNRNSNTKPPYSYVALIAMAIQNSSMKRATLSEIYGYITSRFPYFEKNKKGWQNS 172

Query: 336 IRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           IRHNLSLN+CFVK+ +EG GERKGNYWTL  ++EDMFENGN
Sbjct: 173 IRHNLSLNECFVKIPREGGGERKGNYWTLDPQYEDMFENGN 213


>gi|380020598|ref|XP_003694169.1| PREDICTED: uncharacterized protein LOC100872967 [Apis florea]
          Length = 468

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 103/131 (78%), Gaps = 4/131 (3%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI ++  KRATL+EIY YI  +FPYF+KNKKGWQNSIRHNLSLN+C
Sbjct: 180 SKKPPYSYVALIAMAIQHSAQKRATLSEIYAYITARFPYFQKNKKGWQNSIRHNLSLNEC 239

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMY--A 403
           FVKV ++G GERKGN+WTL  ++ DMFENGNYRRRRRMKRP R   Y  KP  GD +   
Sbjct: 240 FVKVPRDGGGERKGNFWTLDPQYVDMFENGNYRRRRRMKRPYRNAPY--KPLFGDPFTPT 297

Query: 404 HQNLIGRDIFS 414
           H +L  R++F 
Sbjct: 298 HVHLGPRNLFG 308


>gi|169883408|gb|ACA97597.1| forkhead box L2 [Acanthopagrus schlegelii]
          Length = 174

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 15/173 (8%)

Query: 294 VALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEG 353
           VALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV +EG
Sbjct: 1   VALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREG 60

Query: 354 AGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQNLIGRDIF 413
            GERKGNYWTL    EDMFE GNYRRRR MKRP R P  + +P        ++L G D +
Sbjct: 61  GGERKGNYWTLDPACEDMFEKGNYRRRRWMKRPFRPPPTHFQP-------GKSLFGGDGY 113

Query: 414 SATASP------FSSRNTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
              + P      F + N+WS G  P  + Y SC  A    SP +    ++P+S
Sbjct: 114 GYLSPPKYLQSSFMN-NSWSLGQPPTPMSYTSCQMASGNVSPVNVKGLSAPSS 165


>gi|312383871|gb|EFR28774.1| hypothetical protein AND_02838 [Anopheles darlingi]
          Length = 366

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 87/105 (82%), Gaps = 3/105 (2%)

Query: 272 VSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKG 331
            +SP  S SS+T    KPPYSYVALI MAI +++ KRATL+EIY YI  +FPY+EKNKKG
Sbjct: 214 TTSPTGSRSSSTA---KPPYSYVALITMAIQSSQMKRATLSEIYAYITSRFPYYEKNKKG 270

Query: 332 WQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           WQNSIRHNLSLN+CFVK+ +EG GERKGNYWTL  +HEDMFENGN
Sbjct: 271 WQNSIRHNLSLNECFVKIPREGGGERKGNYWTLDPQHEDMFENGN 315


>gi|383853942|ref|XP_003702481.1| PREDICTED: uncharacterized protein LOC100874733 [Megachile
           rotundata]
          Length = 466

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/163 (56%), Positives = 117/163 (71%), Gaps = 3/163 (1%)

Query: 253 SQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLA 312
           S PS+ S P   +  +     +   S S+  + S KPP+SYVALIAMAI ++  KRATL+
Sbjct: 145 STPSAPSTPTTAADGSGSASGTGNGSASNNDSASKKPPFSYVALIAMAIQHSAQKRATLS 204

Query: 313 EIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMF 372
           EIY +I  +FPYF+KNKKGWQNSIRHNLSLN+CFVKV ++G GERKGN+WTL  ++ DMF
Sbjct: 205 EIYAFITARFPYFQKNKKGWQNSIRHNLSLNECFVKVPRDGGGERKGNFWTLDPQYADMF 264

Query: 373 ENGNYRRRRRMKRPVRTPSYNAKPYLGDMYA--HQNLIGRDIF 413
           ENGNYRRRRRMKRP R   Y+ K   GD ++  H +L  R++F
Sbjct: 265 ENGNYRRRRRMKRPYRNAPYH-KTLFGDPFSPTHVHLGPRNLF 306


>gi|158293347|ref|XP_314703.4| AGAP008606-PA [Anopheles gambiae str. PEST]
 gi|157016661|gb|EAA10174.4| AGAP008606-PA [Anopheles gambiae str. PEST]
          Length = 344

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 80/89 (89%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI +++ KRATL+EIY YI  +FPY+EKNKKGWQNSIRHNLSLN+CFV
Sbjct: 100 KPPYSYVALIAMAIQSSQMKRATLSEIYGYITSRFPYYEKNKKGWQNSIRHNLSLNECFV 159

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +EG GERKGNYWTL  ++EDMFENGN
Sbjct: 160 KIPREGGGERKGNYWTLDPQYEDMFENGN 188


>gi|328783755|ref|XP_001121925.2| PREDICTED: hypothetical protein LOC726165 [Apis mellifera]
          Length = 471

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/139 (64%), Positives = 107/139 (76%), Gaps = 6/139 (4%)

Query: 280 SSTTTDSNKPPYSYVALIAMAI--NNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +S  + S KPPYSYVALIAMAI  +++  KRATL+EIY YI  +FPYF+KNKKGWQNSIR
Sbjct: 175 ASNDSASKKPPYSYVALIAMAIQHSHSAQKRATLSEIYAYITARFPYFQKNKKGWQNSIR 234

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPY 397
           HNLSLN+CFVKV ++G GERKGN+WTL  ++ DMFENGNYRRRRRMKRP R   Y  KP 
Sbjct: 235 HNLSLNECFVKVPRDGGGERKGNFWTLDPQYVDMFENGNYRRRRRMKRPYRNAPY--KPL 292

Query: 398 LGDMY--AHQNLIGRDIFS 414
            GD +   H +L  R++F 
Sbjct: 293 FGDPFTPTHVHLGPRNLFG 311


>gi|291236274|ref|XP_002738065.1| PREDICTED: fork-head box L2 transcription factor [Saccoglossus
           kowalevskii]
          Length = 305

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/179 (50%), Positives = 115/179 (64%), Gaps = 20/179 (11%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI  ++ KR TL++IY++I  KFP++EKNKKGWQNSIRHNLSLN+CF+
Sbjct: 67  KPPYSYVALIAMAIRESQEKRLTLSQIYDFIVNKFPFYEKNKKGWQNSIRHNLSLNECFI 126

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK-RPVRTPSYNAKPYLGDMYAHQN 406
           K+ +EG GERKGN+WTL    EDMFE GNYRRRRRMK RP RT + +A       Y  ++
Sbjct: 127 KIPREGGGERKGNFWTLDPACEDMFEKGNYRRRRRMKARPYRTSAQSA------CYEPKS 180

Query: 407 LIGRDIFSATASPFSSR------NTWSG-----PSPNNVYYPSCV--RALPPTSPYSFP 452
           L+  D       P S +      N W        +P+ + Y SC     LP T   ++P
Sbjct: 181 LLTADPTYGGGYPLSHKYLPSAYNNWPAVHHGQTTPSQLGYSSCQTPSRLPQTVEINYP 239


>gi|403304118|ref|XP_003942658.1| PREDICTED: uncharacterized protein LOC101031228 [Saimiri
           boliviensis boliviensis]
          Length = 410

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 76/93 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYR 378
           F+KV +EG GERKGNYWTL    EDMFE GNYR
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYR 144


>gi|185135266|ref|NP_001117957.1| Foxl2 ortholog [Oncorhynchus mykiss]
 gi|56548958|gb|AAS87040.2| Foxl2 ortholog [Oncorhynchus mykiss]
          Length = 305

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 122/192 (63%), Gaps = 14/192 (7%)

Query: 275 PISSPSSTTTD-SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQ 333
           P+    S  TD S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQ
Sbjct: 33  PVQEKVSEKTDPSQKPPYSYVALIAMAIRESTEKRLTLSGIYQYIITKFPFYEKNKKGWQ 92

Query: 334 NSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYN 393
           NSIRHNLSLN+CF+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  +
Sbjct: 93  NSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTH 152

Query: 394 AKPYLGDMYAHQNLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTS 447
            +P        ++L G D +   + P   +     N+WS G  P  + Y SC  A    S
Sbjct: 153 FQP-------GKSLFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVS 205

Query: 448 PYSFPPYASPTS 459
           P +    ++P+S
Sbjct: 206 PVNVKGLSAPSS 217


>gi|410899581|ref|XP_003963275.1| PREDICTED: forkhead box protein D4-like [Takifugu rubripes]
          Length = 243

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 95/137 (69%), Gaps = 10/137 (7%)

Query: 277 SSPSSTTTDSN------KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKK 330
           SSP+    D+       KPPYSYVALIAMAI  +  KR TL  IY++I  +FPY+ K+K+
Sbjct: 21  SSPALKAPDAQDIYSPLKPPYSYVALIAMAIGQSPGKRLTLRGIYDFITTRFPYYSKDKR 80

Query: 331 GWQNSIRHNLSLNDCFVKV-AKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRT 389
            WQNS+RHNLSLNDCF+KV  KE  G+RKGNYW L    EDMFE G+YRR+RR+KRP R 
Sbjct: 81  SWQNSVRHNLSLNDCFLKVPIKETGGDRKGNYWVLDPAFEDMFEKGDYRRKRRVKRPCRP 140

Query: 390 PSYNA---KPYLGDMYA 403
           PS  +   +PY+G  + 
Sbjct: 141 PSLESLYLQPYVGARWG 157


>gi|328702812|ref|XP_003242017.1| PREDICTED: hypothetical protein LOC100570810 [Acyrthosiphon pisum]
          Length = 422

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 111/146 (76%), Gaps = 9/146 (6%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALI+MAI ++ +KR TL+EIY YI  KFPYFEKNKKGWQNSIRHNLSLN+CFV
Sbjct: 148 KPPYSYVALISMAIEHSPYKRVTLSEIYKYITAKFPYFEKNKKGWQNSIRHNLSLNECFV 207

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKP--YLGDMYAHQ 405
           K+ ++G G+RKGNYWTL  K+++MFENGNYRRRRRMKRP RT  Y ++P  Y G  Y+ +
Sbjct: 208 KIPRDGGGDRKGNYWTLDPKYDNMFENGNYRRRRRMKRPYRTTPY-SRPGTYFGPDYS-R 265

Query: 406 NLIGRDIFSATASP-----FSSRNTW 426
            ++G    +  ++P     F   N+W
Sbjct: 266 GILGSHPTNFGSNPNVTPRFDHSNSW 291


>gi|357607502|gb|EHJ65541.1| putative forkhead protein/ forkhead protein domain protein [Danaus
           plexippus]
          Length = 437

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 103/138 (74%), Gaps = 4/138 (2%)

Query: 244 TKVSQKNSSSQPSSS-SPPPDESSSTSIKVSSPISSPSSTTTDSN---KPPYSYVALIAM 299
           + +S+ +S++ P+SS + P  + +  +   SSP  +P STT  S    KPPYSYVALIAM
Sbjct: 99  SALSRDDSANSPTSSENKPKPKPTPAACPGSSPEMNPQSTTPSSQALTKPPYSYVALIAM 158

Query: 300 AINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKG 359
           AI N+++KRATL+EIY YI  KFP+FEK+KKGWQNSIRHNLSLN+CF+KV +EG  E KG
Sbjct: 159 AITNSQNKRATLSEIYAYITKKFPFFEKDKKGWQNSIRHNLSLNECFIKVRREGGSESKG 218

Query: 360 NYWTLATKHEDMFENGNY 377
           NYWTL  +  DMF NGN+
Sbjct: 219 NYWTLDPQCGDMFVNGNF 236


>gi|189529376|ref|XP_001922861.1| PREDICTED: forkhead box protein L2-like [Danio rerio]
          Length = 285

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 82/108 (75%), Gaps = 1/108 (0%)

Query: 271 KVSSPISSPSSTTTD-SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNK 329
           K   P+  P S  TD + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNK
Sbjct: 24  KEDEPLQEPGSEKTDPAQKPPYSYVALIAMAIRESTEKRLTLSGIYQYIITKFPFYEKNK 83

Query: 330 KGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KGWQNSIRHNLSLN+CF+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 84  KGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEKGNY 131


>gi|410910632|ref|XP_003968794.1| PREDICTED: forkhead box protein L2-like [Takifugu rubripes]
          Length = 306

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 117/180 (65%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
           +L G D +   + P   +     N+WS G  P  + Y SC  A    SP +    ++PTS
Sbjct: 158 SLFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPAPMSYTSCQMASGNVSPVNVKGLSAPTS 217


>gi|50344340|emb|CAE51212.1| forkhead foxL2 [Suberites domuncula]
          Length = 275

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 97/131 (74%), Gaps = 5/131 (3%)

Query: 262 PDESSSTSI-KVSSPISSPSSTTTDSN---KPPYSYVALIAMAINNNEHKRATLAEIYNY 317
           P  +S+ S+ ++   + +  +T +D N   KPPYSYVALIAM+I  +  KR TL+ IY Y
Sbjct: 7   PKPASNASVERLKKSLFAAVNTESDRNEDVKPPYSYVALIAMSIAKSPDKRLTLSGIYQY 66

Query: 318 IAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           I   FPY+ KNKKGWQNSIRHNLSLN+CFVKV KEG G+RKGNYWTL    E+MFE GN+
Sbjct: 67  IMDNFPYYAKNKKGWQNSIRHNLSLNECFVKVPKEG-GDRKGNYWTLDESCEEMFEKGNF 125

Query: 378 RRRRRMKRPVR 388
           +RR+RMKRP +
Sbjct: 126 KRRKRMKRPTK 136


>gi|220682197|gb|ACL80211.1| forkhead box L2 [Odontesthes hatcheri]
          Length = 306

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 115/180 (63%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
            L G D +   + P   +     N+WS G  P  + Y SC  A    SP +     +PTS
Sbjct: 158 ALFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNVKGLTAPTS 217


>gi|149018815|gb|EDL77456.1| rCG25899 [Rattus norvegicus]
          Length = 347

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 48  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 107

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 108 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 139


>gi|188529205|gb|ACD62374.1| forkhead transcription factor L2 [Epinephelus merra]
          Length = 306

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 117/180 (65%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
           +L G D +   + P   +     N+WS G  P  + Y SC  A    SP +    ++P+S
Sbjct: 158 SLFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNMKGLSAPSS 217


>gi|348544187|ref|XP_003459563.1| PREDICTED: forkhead box protein L2 [Oreochromis niloticus]
 gi|47606691|gb|AAT36328.1| forkhead transcription factor L2 [Oreochromis niloticus]
 gi|118420479|emb|CAJ80701.1| forkhead transcription factor L2 [Oreochromis niloticus]
 gi|118420481|emb|CAJ80702.1| forkhead transcription factor L2 [Oreochromis aureus]
          Length = 303

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 116/180 (64%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIITKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
            L G D +   + P   +     N+WS G  P  + Y SC  A    SP +    ++P+S
Sbjct: 158 ALFGGDSYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNVKGLSAPSS 217


>gi|47224848|emb|CAG06418.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 306

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 117/180 (65%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
           +L G D +   + P   +     N+WS G  P  + Y SC  A    SP +    ++PTS
Sbjct: 158 SLFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPPPMSYTSCQMASGNVSPVNVKGLSAPTS 217


>gi|260808937|ref|XP_002599263.1| hypothetical protein BRAFLDRAFT_187098 [Branchiostoma floridae]
 gi|229284540|gb|EEN55275.1| hypothetical protein BRAFLDRAFT_187098 [Branchiostoma floridae]
          Length = 180

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/90 (76%), Positives = 77/90 (85%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI  ++ KR TL++IYNYI  KFPY+EKNKKGWQNSIRHNLSLN+CF+
Sbjct: 5   KPPYSYVALIAMAIKESQEKRLTLSQIYNYIIQKFPYYEKNKKGWQNSIRHNLSLNECFI 64

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 65  KVPREGGGERKGNYWTLDPACEDMFEKGNY 94


>gi|383931063|gb|AFH56928.1| forkhead box L2 [Monopterus albus]
          Length = 305

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 118/180 (65%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 44  TQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 103

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 104 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 156

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
           +L G D +   + P   +     N+WS G  P ++ Y SC  A    SP +    ++P+S
Sbjct: 157 SLFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPASMSYTSCQMASGNVSPVNVKGLSAPSS 216


>gi|196122460|gb|ACG69834.1| forkhead box L2 [Odontesthes bonariensis]
          Length = 306

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 115/180 (63%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPLTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
            L G D +   + P   +     N+WS G  P  + Y SC  A    SP +     +PTS
Sbjct: 158 ALFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNVKGLTAPTS 217


>gi|426342302|ref|XP_004037789.1| PREDICTED: uncharacterized protein LOC101152490 [Gorilla gorilla
           gorilla]
          Length = 743

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|281338933|gb|EFB14517.1| hypothetical protein PANDA_018763 [Ailuropoda melanoleuca]
          Length = 576

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 34  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 93

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 94  FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 125


>gi|408535651|gb|AFU74229.1| forkhead box L2A [Cichla monoculus]
          Length = 303

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 116/180 (64%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
            L G D +   + P   +     N+WS G  P  + Y SC  A    SP +    ++P+S
Sbjct: 158 ALFGGDSYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNVKGLSAPSS 217


>gi|304305653|dbj|BAJ15129.1| forkhead transcriptional factor 2 [Halichoeres trimaculatus]
          Length = 306

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 116/180 (64%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  TQKPPYSYVALIAMAIRESTEKRLTLSGIYQYIITKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
           +L G D +     P   +     N+WS G  P  + Y SC  A    SP +    ++P+S
Sbjct: 158 SLFGGDGYGYLTPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNVKALSAPSS 217


>gi|443267906|gb|AGC79587.1| forkhead box L2 protein, partial [Salmo salar]
          Length = 192

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 80/104 (76%), Gaps = 1/104 (0%)

Query: 275 PISSPSSTTTD-SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQ 333
           P+    S  TD S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQ
Sbjct: 33  PVQEKVSEKTDPSQKPPYSYVALIAMAIRESTEKRLTLSGIYQYIITKFPFYEKNKKGWQ 92

Query: 334 NSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           NSIRHNLSLN+CF+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 93  NSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEKGNY 136


>gi|219567004|dbj|BAH05020.1| forkhead box L2 [Oryzias luzonensis]
          Length = 306

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 115/180 (63%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
            L G D +   + P   +     N+WS G  P  + Y SC  A    SP +     +P+S
Sbjct: 158 ALFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNVKGLTAPSS 217


>gi|377824256|gb|AFB77703.1| forkhead transcription factor L2, partial [Epinephelus coioides]
          Length = 237

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 116/178 (65%), Gaps = 13/178 (7%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+
Sbjct: 46  KPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNECFI 105

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQNL 407
           KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        ++L
Sbjct: 106 KVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GKSL 158

Query: 408 IGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
            G D +   + P   +     N+WS G  P  + Y SC  A    SP +    ++P+S
Sbjct: 159 FGEDGYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNMKGLSAPSS 216


>gi|402694447|gb|AFQ90127.1| forkhead transcription factor L2, partial [Salmo salar]
          Length = 195

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 116/181 (64%), Gaps = 14/181 (7%)

Query: 275 PISSPSSTTTD-SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQ 333
           P+    S  TD S KPPYSYVALIAMAI  +  +R TL+ IY YI  KFP++EKNKKGWQ
Sbjct: 19  PVQEKVSEKTDPSQKPPYSYVALIAMAIRESTERRLTLSGIYQYIITKFPFYEKNKKGWQ 78

Query: 334 NSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYN 393
           NSIRHNLSLN+CF+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  +
Sbjct: 79  NSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTH 138

Query: 394 AKPYLGDMYAHQNLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTS 447
            +P        ++L G D +   + P   +     N+WS G  P  + Y SC  A    S
Sbjct: 139 FQP-------GKSLFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVS 191

Query: 448 P 448
           P
Sbjct: 192 P 192


>gi|157278513|ref|NP_001098358.1| forkhead box L2 [Oryzias latipes]
 gi|119637734|dbj|BAF42653.1| forkhead box L2 [Oryzias latipes]
          Length = 306

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 115/180 (63%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
            L G D +   + P   +     N+WS G  P  + Y SC  A    SP +     +P+S
Sbjct: 158 ALFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNVKGLTAPSS 217


>gi|150834507|dbj|BAF69017.1| forkhead transcription factor L2 [Paralichthys olivaceus]
          Length = 306

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 116/180 (64%), Gaps = 13/180 (7%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 157

Query: 406 NLIGRDIFSATASPFSSR-----NTWS-GPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
           +L G D +   + P   +     N+WS G  P  + Y SC  A    SP +    + P+S
Sbjct: 158 SLFGGDGYGYLSPPKYLQSSFMNNSWSLGQPPTPMSYTSCQMASGNVSPVNVKGLSPPSS 217


>gi|118175969|gb|ABK76309.1| forkhead transcription factor L2 [Silurus meridionalis]
          Length = 299

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 81/108 (75%)

Query: 270 IKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNK 329
           IK+ S     +     + KPPYSYVALIAMAI ++  KR TL+ IY YI  KFP++EKNK
Sbjct: 27  IKIESVAVKSAEKADATQKPPYSYVALIAMAIRDSSEKRLTLSGIYQYIISKFPFYEKNK 86

Query: 330 KGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KGWQNSIRHNLSLN+CF+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 87  KGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEKGNY 134


>gi|119599454|gb|EAW79048.1| hCG1654494 [Homo sapiens]
          Length = 344

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|198278403|ref|NP_001128256.1| forkhead box L2 [Xenopus laevis]
 gi|197304553|dbj|BAG69484.1| forkhead box L2 [Xenopus laevis]
          Length = 308

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 76/92 (82%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  ++ KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 44  SQKPPYSYVALIAMAIRESQEKRLTLSAIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 103

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 104 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 135


>gi|392342059|ref|XP_003754496.1| PREDICTED: forkhead box protein L2 [Rattus norvegicus]
 gi|392350298|ref|XP_003750619.1| PREDICTED: forkhead box protein L2 [Rattus norvegicus]
          Length = 374

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 96/148 (64%), Gaps = 14/148 (9%)

Query: 230 PDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKP 289
           P+P++   T  + ++  + K + + P    P P +   T+ +   P          + KP
Sbjct: 6   PEPEDTAGTLLSPESGRAVKEAEASP----PSPGKGGGTAPEKPDP----------AQKP 51

Query: 290 PYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKV 349
           PYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV
Sbjct: 52  PYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKV 111

Query: 350 AKEGAGERKGNYWTLATKHEDMFENGNY 377
            +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 PREGGGERKGNYWTLDPACEDMFEKGNY 139


>gi|371927219|gb|AEX58659.1| transcription factor L2 [Sebastes schlegelii]
          Length = 307

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 116/179 (64%), Gaps = 15/179 (8%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 47  SQKPPYSYVALIAMAIRESTEKRLTLSGIYQYIITKFPFYEKNKKGWQNSIRHNLSLNEC 106

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           F+KV +EG GERKGNYWTL    EDMFE GNYRRRRRMKRP R P  + +P        +
Sbjct: 107 FIKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP-------GK 159

Query: 406 NLIGRDIFSATASPFSSR-----NTWSGPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
           +L G D +   + P   +     N+W   SP  + Y SC  +    SP +    ++P+S
Sbjct: 160 SLFGGDGYGYLSPPKYLQSSFMNNSW---SPTPMSYTSCQMSSGNVSPVNVKGLSAPSS 215


>gi|223890062|dbj|BAH22852.1| forkhead box L2 [Xenopus laevis]
          Length = 304

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 76/92 (82%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  ++ KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 46  SQKPPYSYVALIAMAIRESQEKRLTLSAIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 105

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 106 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 137


>gi|126325863|ref|XP_001365610.1| PREDICTED: forkhead box protein L2-like [Monodelphis domestica]
          Length = 382

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 59  SQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIGKFPFYEKNKKGWQNSIRHNLSLNEC 118

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 119 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 150


>gi|148689046|gb|EDL20993.1| mCG52244 [Mus musculus]
          Length = 286

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 95/148 (64%), Gaps = 14/148 (9%)

Query: 230 PDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKP 289
           P+P++   T    ++  + K + + P    P P +   T+ +   P          + KP
Sbjct: 6   PEPEDTAGTLLAPESGRAVKEAEASP----PSPGKGGGTTPEKPDP----------AQKP 51

Query: 290 PYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKV 349
           PYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV
Sbjct: 52  PYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKV 111

Query: 350 AKEGAGERKGNYWTLATKHEDMFENGNY 377
            +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 PREGGGERKGNYWTLDPACEDMFEKGNY 139


>gi|301607600|ref|XP_002933391.1| PREDICTED: forkhead box protein L2-like [Xenopus (Silurana)
           tropicalis]
          Length = 326

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 68  SQKPPYSYVALIAMAIRESAEKRLTLSAIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 127

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 128 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 159


>gi|22779928|ref|NP_036150.1| forkhead box protein L2 [Mus musculus]
 gi|61252357|sp|O88470.2|FOXL2_MOUSE RecName: Full=Forkhead box protein L2; AltName: Full=Pituitary
           forkhead factor; Short=P-Frk
 gi|22655512|gb|AAN04088.1| putative forkhead transcription factor [Mus musculus]
 gi|37543615|gb|AAM21968.1| putative transcription factor foxl2 [Mus musculus]
 gi|187952721|gb|AAI37813.1| Forkhead box L2 [Mus musculus]
 gi|223459834|gb|AAI37812.1| Forkhead box L2 [Mus musculus]
          Length = 375

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 95/148 (64%), Gaps = 14/148 (9%)

Query: 230 PDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKP 289
           P+P++   T    ++  + K + + P    P P +   T+ +   P          + KP
Sbjct: 6   PEPEDTAGTLLAPESGRAVKEAEASP----PSPGKGGGTTPEKPDP----------AQKP 51

Query: 290 PYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKV 349
           PYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV
Sbjct: 52  PYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKV 111

Query: 350 AKEGAGERKGNYWTLATKHEDMFENGNY 377
            +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 PREGGGERKGNYWTLDPACEDMFEKGNY 139


>gi|110735122|gb|ABG89131.1| fox12 [Kryptolebias marmoratus]
          Length = 307

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 136


>gi|343796196|gb|AEM63537.1| fork head transcription factor Foxl2 [Clarias gariepinus]
          Length = 301

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 76/92 (82%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI ++  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 43  AQKPPYSYVALIAMAIRDSSEKRLTLSGIYQYIIGKFPFYEKNKKGWQNSIRHNLSLNEC 102

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 103 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 134


>gi|197304551|dbj|BAG69483.1| forkhead box L2 [Glandirana rugosa]
          Length = 302

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 44  SQKPPYSYVALIAMAIRESAEKRLTLSAIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 103

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 104 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 135


>gi|307548821|dbj|BAJ19137.1| forkhead box L2 [Misgurnus anguillicaudatus]
          Length = 293

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 44  SQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIITKFPFYEKNKKGWQNSIRHNLSLNEC 103

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 104 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 135


>gi|408535649|gb|AFU74228.1| forkhead box L2A [Callorhinchus callorynchus]
          Length = 305

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 51  SQKPPYSYVALIAMAIRESPEKRLTLSGIYQYIITKFPFYEKNKKGWQNSIRHNLSLNEC 110

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 111 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 142


>gi|224059354|ref|XP_002187454.1| PREDICTED: forkhead box protein L2 [Taeniopygia guttata]
          Length = 307

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 136


>gi|307148797|gb|ADN38241.1| forkhead transcription factor L2 [Gobiocypris rarus]
 gi|341867128|gb|AEK98513.1| Foxl2 [Gobiocypris rarus]
          Length = 306

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 44  TQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 103

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 104 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 135


>gi|449279870|gb|EMC87315.1| Forkhead box protein L2, partial [Columba livia]
          Length = 243

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 136


>gi|261887563|gb|ACY05959.1| forkhead box transcription factor Foxl2 [Cynoglossus semilaevis]
          Length = 307

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 46  TQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 105

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 106 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 137


>gi|113675294|ref|NP_001038717.1| forkhead box protein L2 [Danio rerio]
 gi|94574187|gb|AAI16586.1| Forkhead box L2 [Danio rerio]
          Length = 306

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 44  TQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 103

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 104 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 135


>gi|283837802|ref|NP_001164586.1| forkhead box protein L2 [Oryctolagus cuniculus]
 gi|75053100|sp|Q6VFT5.1|FOXL2_RABIT RecName: Full=Forkhead box protein L2
 gi|37499624|gb|AAQ91846.1| forkhead transcription factor L2 [Oryctolagus cuniculus]
          Length = 384

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 54  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 113

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 114 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 145


>gi|347658915|ref|NP_001231594.1| forkhead box protein L2 [Sus scrofa]
 gi|350591588|ref|XP_003483301.1| PREDICTED: forkhead box protein L2 [Sus scrofa]
 gi|75053101|sp|Q6VFT6.1|FOXL2_PIG RecName: Full=Forkhead box protein L2
 gi|37499622|gb|AAQ91845.1| forkhead transcription factor L2 [Sus scrofa]
          Length = 377

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 53  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 112

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 113 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 144


>gi|395832879|ref|XP_003803989.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein L2 [Otolemur
           garnettii]
          Length = 375

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|68271846|gb|AAY89234.1| transcription factor FOXL2 mutant 1 [Homo sapiens]
          Length = 386

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|62912536|gb|AAY21823.1| FOXL2 [Homo sapiens]
          Length = 387

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|114589450|ref|XP_526323.2| PREDICTED: forkhead box protein L2 [Pan troglodytes]
          Length = 374

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|12751477|ref|NP_075555.1| forkhead box protein L2 [Homo sapiens]
 gi|13626838|sp|P58012.1|FOXL2_HUMAN RecName: Full=Forkhead box protein L2
 gi|12667205|gb|AAK01352.1|AF301906_1 forkhead transcription factor FOXL2 [Homo sapiens]
 gi|33243899|gb|AAQ01519.1| forkhead box L2 [Homo sapiens]
 gi|38512195|gb|AAH62549.1| Forkhead box L2 [Homo sapiens]
 gi|62912532|gb|AAY21821.1| FOXL2 [Homo sapiens]
 gi|62912534|gb|AAY21822.1| FOXL2 [Homo sapiens]
          Length = 376

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|297672086|ref|XP_002814143.1| PREDICTED: forkhead box protein L2 [Pongo abelii]
 gi|402861422|ref|XP_003895091.1| PREDICTED: forkhead box protein L2 [Papio anubis]
          Length = 376

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|397512745|ref|XP_003826699.1| PREDICTED: forkhead box protein L2 [Pan paniscus]
          Length = 339

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|371535700|gb|AEX33123.1| forkhead box L2 [Carassius auratus]
          Length = 216

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 35  TQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 94

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 95  FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 126


>gi|60302862|ref|NP_001012630.1| forkhead box protein L2 [Gallus gallus]
 gi|45332266|gb|AAS58057.1| transcription factor FOXL2 [Gallus gallus]
          Length = 305

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 136


>gi|68271848|gb|AAY89235.1| transcription factor FOXL2 mutant 2 [Homo sapiens]
          Length = 269

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|81908813|sp|Q4VUF1.1|FOXL2_ELLLU RecName: Full=Forkhead box protein L2
 gi|54126060|gb|AAV30684.1| forkhead transcription factor Foxl2 [Ellobius lutescens]
          Length = 373

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 48  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 107

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 108 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 139


>gi|321477566|gb|EFX88524.1| hypothetical protein DAPPUDRAFT_37508 [Daphnia pulex]
          Length = 92

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 79/92 (85%), Gaps = 2/92 (2%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI  +  KR TL+EIYNYI  KFPY+EKNKKGWQNSIRHNLSLN+CFV
Sbjct: 1   KPPYSYVALIAMAIKESREKRLTLSEIYNYITKKFPYYEKNKKGWQNSIRHNLSLNECFV 60

Query: 348 KVAKEG--AGERKGNYWTLATKHEDMFENGNY 377
           K+ +EG   G+RKGNYWTL  ++EDMFENGNY
Sbjct: 61  KIPREGNATGDRKGNYWTLDPQYEDMFENGNY 92


>gi|75065366|sp|Q8MIP2.1|FOXL2_CAPHI RecName: Full=Forkhead box protein L2
 gi|21464547|gb|AAM52099.1| forkhead box L2 [Capra hircus]
          Length = 377

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 53  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 112

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 113 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 144


>gi|408535647|gb|AFU74227.1| forkhead box L2A [Rhizoprionodon lalandii]
          Length = 298

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 44  TQKPPYSYVALIAMAIRESPEKRLTLSGIYQYIITKFPFYEKNKKGWQNSIRHNLSLNEC 103

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 104 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 135


>gi|72534786|ref|NP_001026920.1| forkhead box protein L2 [Bos taurus]
 gi|75053102|sp|Q6VFT7.1|FOXL2_BOVIN RecName: Full=Forkhead box protein L2
 gi|37499620|gb|AAQ91844.1| forkhead transcription factor L2 [Bos taurus]
 gi|296490981|tpg|DAA33079.1| TPA: forkhead box protein L2 [Bos taurus]
          Length = 377

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 53  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 112

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 113 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 144


>gi|145321087|gb|ABP63571.1| forkhead box L2 [Scyliorhinus canicula]
          Length = 298

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 44  TQKPPYSYVALIAMAIRESPEKRLTLSGIYQYIITKFPFYEKNKKGWQNSIRHNLSLNEC 103

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 104 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 135


>gi|116283449|gb|AAH19896.1| FOXL2 protein [Homo sapiens]
          Length = 240

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|440894203|gb|ELR46714.1| Forkhead box protein L2, partial [Bos grunniens mutus]
          Length = 164

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 43  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 102

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 103 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 134


>gi|297286780|ref|XP_001109917.2| PREDICTED: forkhead box protein L2-like [Macaca mulatta]
          Length = 265

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|345788976|ref|XP_003433157.1| PREDICTED: forkhead box protein L2 [Canis lupus familiaris]
          Length = 319

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 69  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 128

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 129 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 160


>gi|68271850|gb|AAY89236.1| transcription factor FOXL2 mutant 3 [Homo sapiens]
          Length = 218

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143


>gi|41055835|ref|NP_957278.1| forkhead box protein L1 [Danio rerio]
 gi|32766647|gb|AAH55156.1| Forkhead box L1 [Danio rerio]
          Length = 363

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 77/98 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   KRATL+ IY +I  +FPY+  NK+GWQNSIRHNLSLNDCF+
Sbjct: 52  KPPYSYIALIAMAIKNAPDKRATLSGIYQFIMDRFPYYHDNKQGWQNSIRHNLSLNDCFI 111

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR 385
           KV +E     KG+YWTL TK  DMFENGNYRRR+R  R
Sbjct: 112 KVPREKGRPGKGSYWTLDTKCLDMFENGNYRRRKRKCR 149


>gi|58430694|dbj|BAD89148.1| forkhead transcription factor [Danio rerio]
          Length = 360

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 77/98 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   KRATL+ IY +I  +FPY+  NK+GWQNSIRHNLSLNDCF+
Sbjct: 52  KPPYSYIALIAMAIKNAPDKRATLSGIYQFIMDRFPYYHDNKQGWQNSIRHNLSLNDCFI 111

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR 385
           KV +E     KG+YWTL TK  DMFENGNYRRR+R  R
Sbjct: 112 KVPREKGRPGKGSYWTLDTKCLDMFENGNYRRRKRKCR 149


>gi|218750163|gb|ACL01242.1| forkhead transcription factor FOXL2 [Alligator mississippiensis]
          Length = 96

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 5   SQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 64

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 65  FIKVPREGGGERKGNYWTLDPACEDMFEKGNY 96


>gi|332646982|gb|AEE80502.1| FOXL2 [Gallus gallus]
          Length = 305

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 74/92 (80%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 45  SQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNEC 104

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F+KV +EG GERKGNYWTL    EDM E GNY
Sbjct: 105 FIKVPREGGGERKGNYWTLDPACEDMLEKGNY 136


>gi|332019033|gb|EGI59567.1| Forkhead box protein L2 [Acromyrmex echinatior]
          Length = 306

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 91/118 (77%), Gaps = 10/118 (8%)

Query: 299 MAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERK 358
           MAI ++EHKRATL+EIY YI  KFPYFEKNKKGWQNSIRHNLSLN+CFVKV +EG GERK
Sbjct: 1   MAIQHSEHKRATLSEIYTYITAKFPYFEKNKKGWQNSIRHNLSLNECFVKVPREGGGERK 60

Query: 359 GNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGD-MYAHQNLIG-RDIFS 414
           GN+WTL  ++EDMFENGNYRRRR  + P R      KP  GD   A  +++G R+IF 
Sbjct: 61  GNFWTLDPQYEDMFENGNYRRRR--RTPYR------KPLCGDPCPATTHMLGPRNIFG 110


>gi|32350596|gb|AAO12874.1| forkhead transcription factor L2 [Gallus gallus]
 gi|32350598|gb|AAO12875.1| forkhead transcription factor L2 [Trachemys scripta]
          Length = 110

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 74/90 (82%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+
Sbjct: 1   KPPYSYVALIAMAIRESAEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNECFI 60

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 61  KVPREGGGERKGNYWTLDPACEDMFEKGNY 90


>gi|443734601|gb|ELU18532.1| hypothetical protein CAPTEDRAFT_88179, partial [Capitella teleta]
          Length = 92

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 77/92 (83%), Gaps = 2/92 (2%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI ++  KR TL+ IY YI  KFPYFEKNKKGWQNSIRHNLSLN+CFV
Sbjct: 1   KPPYSYVALIAMAIKDSGDKRLTLSGIYAYIMKKFPYFEKNKKGWQNSIRHNLSLNECFV 60

Query: 348 KVAKEGAGERKGNYWTL--ATKHEDMFENGNY 377
           KV +EG GERKGNYW+L  + + EDMFE GN+
Sbjct: 61  KVPREGGGERKGNYWSLDPSMRFEDMFEKGNF 92


>gi|156402995|ref|XP_001639875.1| predicted protein [Nematostella vectensis]
 gi|156227006|gb|EDO47812.1| predicted protein [Nematostella vectensis]
          Length = 104

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 73/90 (81%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI  +  KR TL  IY YI  KFPY+EKNKKGWQNSIRHNLSLN+CF+
Sbjct: 1   KPPYSYVALIAMAIRESPEKRLTLNGIYQYIISKFPYYEKNKKGWQNSIRHNLSLNECFI 60

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 61  KVPREGGGERKGNYWTLDPACEDMFEKGNY 90


>gi|74096253|ref|NP_001027769.1| FoxL protein [Ciona intestinalis]
 gi|40642805|emb|CAD58962.1| FoxL protein [Ciona intestinalis]
          Length = 387

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 76/91 (83%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI ++  K+ TL+ IY YI  KFP++EKN+KGWQNSIRHNLSLN+C
Sbjct: 124 TQKPPYSYVALIAMAIRDSNEKKLTLSGIYQYIVDKFPFYEKNRKGWQNSIRHNLSLNEC 183

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           FVKV +EG GERKGN+W L +  EDMFENGN
Sbjct: 184 FVKVPREGGGERKGNFWMLDSNCEDMFENGN 214


>gi|405974198|gb|EKC38861.1| Forkhead box protein L2 [Crassostrea gigas]
          Length = 415

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 84/113 (74%), Gaps = 4/113 (3%)

Query: 264 ESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFP 323
           +SS+ ++K    I + +  T    KPP+SYVALIAMAI  +  KR TL+ IY +I  KFP
Sbjct: 106 KSSTGNVK----IENENKYTDPEQKPPFSYVALIAMAIKESSEKRLTLSGIYQFIINKFP 161

Query: 324 YFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           Y+EKNKKGWQNSIRHNLSLN+CFVKV +EG GERKGN+WTL    EDMFE GN
Sbjct: 162 YYEKNKKGWQNSIRHNLSLNECFVKVPREGGGERKGNFWTLDPAFEDMFEKGN 214


>gi|37499618|gb|AAQ91843.1| forkhead transcription factor L2 [Macropus eugenii]
          Length = 146

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 72/88 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 59  SQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIGKFPFYEKNKKGWQNSIRHNLSLNEC 118

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFE 373
           F+KV +EG GERKGNYWTL    EDMFE
Sbjct: 119 FIKVPREGGGERKGNYWTLDPACEDMFE 146


>gi|348504062|ref|XP_003439581.1| PREDICTED: forkhead box protein L1-like [Oreochromis niloticus]
          Length = 396

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 76/96 (79%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +RATL+ IY +I  +FP++  NK+GWQNSIRHNLSLNDCF
Sbjct: 52  QKPPYSYIALIAMAIKSAPEQRATLSGIYQFIMDRFPFYHDNKQGWQNSIRHNLSLNDCF 111

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           +KV +E     KG+YWTL TK  DMFENGNYRRR+R
Sbjct: 112 IKVPREKGRPGKGSYWTLDTKCLDMFENGNYRRRKR 147


>gi|185135199|ref|NP_001117956.1| Foxl2 diverged paralog [Oncorhynchus mykiss]
 gi|46277674|gb|AAS87039.1| Foxl2 diverged paralog [Oncorhynchus mykiss]
          Length = 296

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 74/91 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY +I  KFPY+EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  TEKPPYSYVALIAMAIKESREKRLTLSGIYQFIISKFPYYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           F+KV +EG G+RKGN+WTL    E+MFE GN
Sbjct: 112 FLKVPREGGGDRKGNFWTLDPAFENMFEKGN 142


>gi|348514858|ref|XP_003444957.1| PREDICTED: forkhead box protein I1-like [Oreochromis niloticus]
          Length = 268

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 74/89 (83%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI ++E+KR TL+ IY YI  KFPY+E+NKKGWQNSIRHNLSLN+CFV
Sbjct: 35  KPPYSYVALIAMAIKDSENKRQTLSGIYQYIVSKFPYYERNKKGWQNSIRHNLSLNECFV 94

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           KV ++  G+RKGNYW L    +DMFE GN
Sbjct: 95  KVPRDSGGDRKGNYWMLDPAFKDMFEKGN 123


>gi|3342012|gb|AAC27508.1| pituitary forkhead factor [Mus musculus]
          Length = 90

 Score =  144 bits (363), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/90 (74%), Positives = 74/90 (82%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+
Sbjct: 1   KPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFI 60

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV +EG GERKGNYWTL    EDMFE GNY
Sbjct: 61  KVPREGGGERKGNYWTLDPACEDMFEKGNY 90


>gi|405949951|gb|EKC17961.1| Forkhead box protein L1 [Crassostrea gigas]
          Length = 385

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 74/95 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   ++ TL  IY +I  +FPY+  NK+GWQNSIRHNLSLNDCFV
Sbjct: 70  KPPYSYIALIAMAIKNAPDRKITLNGIYQFIMERFPYYHDNKQGWQNSIRHNLSLNDCFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+E     KGNYWTL    E+MFENGNYRRR+R
Sbjct: 130 KVAREKGKPGKGNYWTLDPNCEEMFENGNYRRRKR 164


>gi|171544949|ref|NP_001116391.1| forkhead box L1 [Oryzias latipes]
 gi|156152084|gb|ABU54322.1| forkhead box L1 [Oryzias latipes]
          Length = 326

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 76/96 (79%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +RATL+ IY +I  +FP++  NK+GWQNSIRHNLSLNDCF
Sbjct: 49  QKPPYSYIALIAMAIKSAPGQRATLSGIYQFIMDRFPFYHDNKQGWQNSIRHNLSLNDCF 108

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           +KV +E     KG+YWTL TK  DMFENGNYRRR+R
Sbjct: 109 IKVPRERGRPGKGSYWTLDTKCLDMFENGNYRRRKR 144


>gi|376372985|gb|AFB35647.1| FOXL2 [Azumapecten farreri]
          Length = 368

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 72/89 (80%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SYVALIAMAI  +  KR TL+ IY YI  KFPY+E+NKKGWQNSIRHNLSLN+CFV
Sbjct: 130 KPPFSYVALIAMAIKESGDKRLTLSGIYQYIISKFPYYERNKKGWQNSIRHNLSLNECFV 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           KV +EG GERKGN+WTL     DMFE GN
Sbjct: 190 KVPREGGGERKGNFWTLDPAFNDMFEKGN 218


>gi|70569627|dbj|BAE06446.1| transcription factor protein [Ciona intestinalis]
          Length = 192

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 76/91 (83%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI ++  K+ TL+ IY YI  KFP++EKN+KGWQNSIRH+LSLN+C
Sbjct: 49  TQKPPYSYVALIAMAIRDSNEKKLTLSGIYQYIVDKFPFYEKNRKGWQNSIRHDLSLNEC 108

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           FVKV +EG GERKGN+W L +  EDMFENGN
Sbjct: 109 FVKVPREGGGERKGNFWMLDSNCEDMFENGN 139


>gi|307180126|gb|EFN68170.1| Forkhead box protein L2 [Camponotus floridanus]
          Length = 306

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/118 (67%), Positives = 93/118 (78%), Gaps = 3/118 (2%)

Query: 299 MAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERK 358
           MAI ++  KRATL+EIY YI  KFPYFEKNKKGWQNSIRHNLSLN+CFVKV +EG GERK
Sbjct: 1   MAIQHSPQKRATLSEIYAYITAKFPYFEKNKKGWQNSIRHNLSLNECFVKVPREGGGERK 60

Query: 359 GNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYA--HQNLIGRDIFS 414
           GN+WTL  ++EDMFENGNYRRRRRMKRP R   Y+ K   GD ++  H +L  R+IF 
Sbjct: 61  GNFWTLDPQYEDMFENGNYRRRRRMKRPYRNAPYH-KQLFGDPFSTTHVHLGPRNIFG 117


>gi|192447389|ref|NP_001122282.1| uncharacterized protein LOC100004081 [Danio rerio]
 gi|190338868|gb|AAI62838.1| Similar to Foxl2 diverged paralog [Danio rerio]
          Length = 260

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 73/89 (82%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI  +E K+ TL +IY+YI  KFPY+EKNKKGWQNSIRHNLSLN+CFV
Sbjct: 35  KPPYSYVALIAMAIRESEDKKLTLNDIYSYIISKFPYYEKNKKGWQNSIRHNLSLNECFV 94

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E  GERKGN+WTL     DMFE GN
Sbjct: 95  KIPRESGGERKGNFWTLDPAFNDMFEKGN 123


>gi|225111255|gb|ACN80999.1| forkhead box L2 [Crassostrea gigas]
          Length = 367

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 72/89 (80%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SYVALIAMAI  +  KR TL+ IY +I  KFPY+EKNKKGWQNSIRHNLSLN+CFV
Sbjct: 126 KPPFSYVALIAMAIKESSEKRLTLSGIYQFIINKFPYYEKNKKGWQNSIRHNLSLNECFV 185

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           KV +EG  ERKGN+WTL    EDMFE GN
Sbjct: 186 KVPREGGEERKGNFWTLDPAFEDMFEKGN 214


>gi|410297080|gb|JAA27140.1| forkhead box L1 [Pan troglodytes]
          Length = 345

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 77/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++ +NK+GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYRENKQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|311256907|ref|XP_003126859.1| PREDICTED: forkhead box protein L1-like [Sus scrofa]
          Length = 338

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 77/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL+ IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAEPPQKPPYSYIALIAMAIQDAPGQRVTLSGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|444707296|gb|ELW48579.1| Forkhead box protein L2 [Tupaia chinensis]
          Length = 207

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 83/122 (68%), Gaps = 9/122 (7%)

Query: 251 SSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTD-SNKPPYSYVALIAMAINNNEHKRA 309
           +  +P ++ P P + S            P++   D + KPPYSYVALIAMAI  +  KR 
Sbjct: 41  AGKEPEAAPPSPGKGSGAG--------GPAAEKPDPAQKPPYSYVALIAMAIRESAEKRL 92

Query: 310 TLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHE 369
           TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV +EG GERKGNYWTL    E
Sbjct: 93  TLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACE 152

Query: 370 DM 371
           D+
Sbjct: 153 DI 154


>gi|61823329|ref|XP_583889.1| PREDICTED: forkhead box protein L1 [Bos taurus]
 gi|297485174|ref|XP_002694802.1| PREDICTED: forkhead box protein L1 [Bos taurus]
 gi|296478047|tpg|DAA20162.1| TPA: forkhead box C2-like [Bos taurus]
          Length = 346

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRVEPPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|351696292|gb|EHA99210.1| Forkhead box protein L2 [Heterocephalus glaber]
          Length = 215

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 70/86 (81%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 48  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 107

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDM 371
           F+KV +EG GERKGNYWTL    ED+
Sbjct: 108 FIKVPREGGGERKGNYWTLDPACEDI 133


>gi|395748187|ref|XP_002826772.2| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein L1 [Pongo
           abelii]
          Length = 336

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 90/152 (59%), Gaps = 5/152 (3%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLG 399
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P        +P   
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPGPGAPEAKRP--- 157

Query: 400 DMYAHQNLIGRDIFSATASPFSSRNTWSGPSP 431
              A  +    +  S    P   R + +GPSP
Sbjct: 158 --RAETHERSTEAGSGAGGPVGDRFSPAGPSP 187


>gi|432866130|ref|XP_004070713.1| PREDICTED: uncharacterized protein LOC101162366 [Oryzias latipes]
          Length = 263

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 74/101 (73%)

Query: 276 ISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           ISS         KPPYSYVALIAMAI ++  +R TL  IY YI  KFPY+EKNKKGWQNS
Sbjct: 18  ISSTPEEAPPLEKPPYSYVALIAMAIKDSRDQRKTLGGIYQYIISKFPYYEKNKKGWQNS 77

Query: 336 IRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           IRHNLSLN+CFVKV +E  G++KGN+W L    EDMFE GN
Sbjct: 78  IRHNLSLNECFVKVPRENGGDKKGNFWMLDPACEDMFEKGN 118


>gi|390351964|ref|XP_003727781.1| PREDICTED: uncharacterized protein LOC579718 [Strongylocentrotus
           purpuratus]
          Length = 521

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 71/90 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N+  K+ TL  IY +I  +FPY+  NK+GWQNSIRHNLSLNDCFV
Sbjct: 59  KPPYSYIALIAMAIRNSSDKKVTLNGIYQFIMDRFPYYHDNKQGWQNSIRHNLSLNDCFV 118

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA+E     KGNYWTLA   EDMFENGN+
Sbjct: 119 KVAREKGKPGKGNYWTLAADCEDMFENGNF 148


>gi|134024034|gb|AAI35134.1| foxl1 protein [Xenopus (Silurana) tropicalis]
          Length = 430

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 76/100 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI ++   R TL  IY +I  +FP++  NK+GWQNSIRHNLSLNDCF+
Sbjct: 75  KPPYSYIALIAMAIKDSPDHRVTLNGIYQFIMDRFPFYHDNKQGWQNSIRHNLSLNDCFI 134

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV +E     KG+YWTL  K  DMFENGN+RRR+R  +P+
Sbjct: 135 KVPREKGRPGKGSYWTLDPKCLDMFENGNFRRRKRKPKPI 174


>gi|395856867|ref|XP_003800839.1| PREDICTED: forkhead box protein L1 [Otolemur garnettii]
          Length = 350

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRADPPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|82706208|gb|ABB89488.1| forkhead transcription factor L1 [Strongylocentrotus purpuratus]
          Length = 431

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 71/90 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N+  K+ TL  IY +I  +FPY+  NK+GWQNSIRHNLSLNDCFV
Sbjct: 45  KPPYSYIALIAMAIRNSSDKKVTLNGIYQFIMDRFPYYHDNKQGWQNSIRHNLSLNDCFV 104

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA+E     KGNYWTLA   EDMFENGN+
Sbjct: 105 KVAREKGKPGKGNYWTLAADCEDMFENGNF 134


>gi|332246838|ref|XP_003272562.1| PREDICTED: forkhead box protein L1 [Nomascus leucogenys]
          Length = 344

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|426383154|ref|XP_004058153.1| PREDICTED: forkhead box protein L1 [Gorilla gorilla gorilla]
          Length = 345

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|426243426|ref|XP_004015557.1| PREDICTED: forkhead box protein L1 [Ovis aries]
          Length = 307

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 76/108 (70%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
            S      KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 28  GSRVEPPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 87

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P 
Sbjct: 88  LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPC 135


>gi|71681183|gb|AAI00028.1| Forkhead box L1 [Homo sapiens]
          Length = 345

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|22779860|ref|NP_005241.1| forkhead box protein L1 [Homo sapiens]
 gi|13638268|sp|Q12952.2|FOXL1_HUMAN RecName: Full=Forkhead box protein L1; AltName:
           Full=Forkhead-related protein FKHL11; AltName:
           Full=Forkhead-related transcription factor 7;
           Short=FREAC-7
 gi|11762068|gb|AAG40312.1|AF315075_1 forkhead family transcription factor FOXL1 [Homo sapiens]
 gi|109658834|gb|AAI17227.1| Forkhead box L1 [Homo sapiens]
 gi|119615820|gb|EAW95414.1| forkhead box L1 [Homo sapiens]
 gi|208968415|dbj|BAG74046.1| forkhead box L1 [synthetic construct]
          Length = 345

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|194208873|ref|XP_001916650.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein L1-like [Equus
           caballus]
          Length = 309

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 75/100 (75%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLNDCF
Sbjct: 48  QKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNDCF 107

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           VKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 108 VKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|285157676|gb|ADC35033.1| fox/forkhead [Capitella teleta]
          Length = 320

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/100 (62%), Positives = 76/100 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI +   ++ TL  IY +I  +FPY+  NK+GWQNSIRHNLSLNDCFV
Sbjct: 79  KPPYSYIALIAMAIKSAPGRKITLNGIYQFIMERFPYYHDNKQGWQNSIRHNLSLNDCFV 138

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV +E     KGNYWTL    EDMF++GNYRRR+R  +P+
Sbjct: 139 KVPREKGKPGKGNYWTLDPNCEDMFDHGNYRRRKRRAKPL 178


>gi|114663994|ref|XP_511154.2| PREDICTED: forkhead box protein L1 [Pan troglodytes]
          Length = 345

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|403260875|ref|XP_003922876.1| PREDICTED: forkhead box protein L1 [Saimiri boliviensis
           boliviensis]
          Length = 345

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 76/108 (70%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P 
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPA 148


>gi|21927980|gb|AAM77968.1| forkhead transcription factor [Bos taurus]
          Length = 88

 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/88 (73%), Positives = 72/88 (81%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+
Sbjct: 1   KPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFI 60

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           KV +EG GERKGNYWTL    EDMFE G
Sbjct: 61  KVPREGGGERKGNYWTLDPACEDMFEKG 88


>gi|73956953|ref|XP_851625.1| PREDICTED: forkhead box protein L1 [Canis lupus familiaris]
          Length = 356

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 77/111 (69%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAEPPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTP 390
           LSLN+CFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P   P
Sbjct: 101 LSLNECFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPGAGP 151


>gi|296231744|ref|XP_002761283.1| PREDICTED: forkhead box protein L1 [Callithrix jacchus]
          Length = 344

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 75/101 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLNDCF
Sbjct: 47  QKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNDCF 106

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           VKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P 
Sbjct: 107 VKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPA 147


>gi|431838544|gb|ELK00476.1| Forkhead box protein L1 [Pteropus alecto]
          Length = 349

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 75/100 (75%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLNDCF
Sbjct: 48  QKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNDCF 107

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           VKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 108 VKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|301613110|ref|XP_002936059.1| PREDICTED: hypothetical protein LOC100038263 [Xenopus (Silurana)
           tropicalis]
          Length = 495

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 76/100 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI ++   R TL  IY +I  +FP++  NK+GWQNSIRHNLSLNDCF+
Sbjct: 140 KPPYSYIALIAMAIKDSPDHRVTLNGIYQFIMDRFPFYHDNKQGWQNSIRHNLSLNDCFI 199

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV +E     KG+YWTL  K  DMFENGN+RRR+R  +P+
Sbjct: 200 KVPREKGRPGKGSYWTLDPKCLDMFENGNFRRRKRKPKPI 239


>gi|120952618|ref|NP_032050.2| forkhead box protein L1 [Mus musculus]
 gi|408360106|sp|Q64731.2|FOXL1_MOUSE RecName: Full=Forkhead box protein L1; AltName:
           Full=Forkhead-related protein FKHL11; AltName:
           Full=Transcription factor FKH-6
 gi|148679707|gb|EDL11654.1| forkhead box L1 [Mus musculus]
 gi|187950795|gb|AAI37807.1| Forkhead box L1 [Mus musculus]
 gi|187952719|gb|AAI37806.1| Forkhead box L1 [Mus musculus]
          Length = 336

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 75/101 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLN+CF
Sbjct: 48  QKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNECF 107

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           VKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P 
Sbjct: 108 VKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPA 148


>gi|395508445|ref|XP_003758522.1| PREDICTED: forkhead box protein L1 [Sarcophilus harrisii]
          Length = 325

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 75/100 (75%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  NK+GWQNSIRHNLSLNDCF
Sbjct: 48  QKPPYSYIALIAMAIKDAPEQRVTLNGIYQFIMDRFPFYHDNKQGWQNSIRHNLSLNDCF 107

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           VKV +E     KG+YWTL  +  DMFE+GNYRRR+R  +P
Sbjct: 108 VKVPREKGRPGKGSYWTLDPRCLDMFEHGNYRRRKRKPKP 147


>gi|317419532|emb|CBN81569.1| Forkhead box protein I2-A [Dicentrarchus labrax]
          Length = 380

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 84/118 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N + K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 131 RPPYSYSALIAMAIQNTQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           KVA++     KGNYWTL    E MF+NGN+RR+R+ +  +     NA P   +  AH+
Sbjct: 191 KVARDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRADINGADSNALPVKSEDGAHK 248


>gi|354465370|ref|XP_003495153.1| PREDICTED: forkhead box protein L1-like [Cricetulus griseus]
 gi|344237998|gb|EGV94101.1| Forkhead box protein L1 [Cricetulus griseus]
          Length = 334

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 80/114 (70%)

Query: 274 SPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQ 333
           +P ++ +       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQ
Sbjct: 33  TPAAALAGRAEPPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQ 92

Query: 334 NSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           NSIRHNLSLN+CFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P 
Sbjct: 93  NSIRHNLSLNECFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPA 146


>gi|402909239|ref|XP_003917330.1| PREDICTED: forkhead box protein L1 [Papio anubis]
          Length = 283

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|363747012|ref|XP_001231599.2| PREDICTED: forkhead box protein L1 [Gallus gallus]
          Length = 303

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 79/108 (73%), Gaps = 3/108 (2%)

Query: 278 SPSSTTTDSN---KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           +PSS  T  +   KPPYSY+ALIAMAI     ++ TL+ IY +I  +FP++  NK+GWQN
Sbjct: 27  APSSAITRQDPPQKPPYSYIALIAMAIKEAPEQKVTLSGIYQFIMDRFPFYHDNKQGWQN 86

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           SIRHNLSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R
Sbjct: 87  SIRHNLSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKR 134


>gi|293343411|ref|XP_001079078.2| PREDICTED: forkhead box protein L1-like [Rattus norvegicus]
 gi|392355072|ref|XP_003751934.1| PREDICTED: forkhead box protein L1-like [Rattus norvegicus]
 gi|149038357|gb|EDL92717.1| rCG51404 [Rattus norvegicus]
          Length = 341

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 75/101 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLN+CF
Sbjct: 48  QKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNECF 107

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           VKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P 
Sbjct: 108 VKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPA 148


>gi|391341221|ref|XP_003744929.1| PREDICTED: uncharacterized protein LOC100905488 [Metaseiulus
           occidentalis]
          Length = 421

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 72/95 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP SY+ALIAMAI +   +R TL  IY +I   FPY+  NK+GWQNSIRHNLSLNDCFV
Sbjct: 119 KPPCSYIALIAMAIRSAPEQRITLNGIYKFIMENFPYYNDNKQGWQNSIRHNLSLNDCFV 178

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +E     KGNYWTL TK E+MFENGN RRR+R
Sbjct: 179 KVPRERGKPGKGNYWTLDTKGEEMFENGNLRRRKR 213


>gi|426251431|ref|XP_004019425.1| PREDICTED: forkhead box protein C1 [Ovis aries]
          Length = 264

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 77/109 (70%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           HNLSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 128 HNLSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 176


>gi|1199830|emb|CAA63243.1| fkh-6 [Mus musculus]
          Length = 337

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 75/101 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLN+CF
Sbjct: 48  QKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNECF 107

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           VKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P 
Sbjct: 108 VKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPA 148


>gi|397500515|ref|XP_003845987.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein L1 [Pan
           paniscus]
          Length = 267

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|391335010|ref|XP_003741890.1| PREDICTED: uncharacterized protein LOC100902875 [Metaseiulus
           occidentalis]
          Length = 437

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 85/120 (70%), Gaps = 8/120 (6%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL+ IY++I +KFP++  NK+GWQNSIRHNLSLN+
Sbjct: 40  DMVKPPYSYIALIAMAIQNTPEKKQTLSGIYDFIMIKFPFYRHNKQGWQNSIRHNLSLNE 99

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRP-------VRTPSYNAKP 396
           CFVK+ ++     KG+YWTL  +  +MFENG+Y RRRRR K+        V  P+ NA P
Sbjct: 100 CFVKIPRDEKKPGKGSYWTLHPESLNMFENGSYLRRRRRFKKSDLERKNDVDEPAVNAAP 159


>gi|299773490|gb|ADJ38819.1| Foxl2-like protein [Salmo salar]
          Length = 294

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 72/91 (79%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY +I   FPY+EKNKKGWQNSIRHNLSLN+C
Sbjct: 50  TEKPPYSYVALIAMAIKESREKRLTLSGIYQFIISTFPYYEKNKKGWQNSIRHNLSLNEC 109

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           F+KV +EG G+RKGN+W L    ++MFE GN
Sbjct: 110 FLKVPREGGGDRKGNFWILDPAFDNMFEKGN 140


>gi|269785233|ref|NP_001161544.1| forkhead box L1 transcription factor [Saccoglossus kowalevskii]
 gi|268054073|gb|ACY92523.1| forkhead box L1 transcription factor [Saccoglossus kowalevskii]
          Length = 498

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 74/95 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI +   ++ TL  IY +I  +FPY+  NK+GWQNSIRHNLSLNDCFV
Sbjct: 55  KPPYSYIALIAMAIRSAPDQKTTLNGIYQFIMERFPYYHDNKQGWQNSIRHNLSLNDCFV 114

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +E     KGNYW+LA   E+MFENGN+RRR+R
Sbjct: 115 KVPREKGKPGKGNYWSLAPDCEEMFENGNFRRRKR 149


>gi|167987441|gb|ACA13392.1| forkhead box l1, partial [Scyliorhinus canicula]
          Length = 387

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 73/95 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  NK+GWQNSIRHNLSLNDCF+
Sbjct: 94  KPPYSYIALIAMAIKSVPDQRVTLNGIYQFIMERFPFYHDNKQGWQNSIRHNLSLNDCFI 153

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +E     KG+YWTL  +  DMFENGNYRRR+R
Sbjct: 154 KVPREKGKPGKGSYWTLDPRCTDMFENGNYRRRKR 188


>gi|224063697|ref|XP_002194184.1| PREDICTED: forkhead box protein L1 [Taeniopygia guttata]
          Length = 246

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 75/103 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI     ++ TL+ IY +I  +FP++  NK+GWQNSIRHNLSLNDCFV
Sbjct: 40  KPPYSYIALIAMAIKEAPEQKVTLSGIYQFIMDRFPFYHDNKQGWQNSIRHNLSLNDCFV 99

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTP 390
           KV +E     KG+YWTL  +  DMFENGNYRRR+R  +    P
Sbjct: 100 KVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKAAAAP 142


>gi|126304942|ref|XP_001376265.1| PREDICTED: forkhead box protein L1-like [Monodelphis domestica]
          Length = 335

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 75/100 (75%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  NK+GWQNSIRHNLSLNDCF
Sbjct: 48  QKPPYSYIALIAMAIKDAPDQRVTLNGIYQFIMDRFPFYHDNKQGWQNSIRHNLSLNDCF 107

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           VKV +E     KG+YWTL  +  DMFE+GNYRRR+R  +P
Sbjct: 108 VKVPREKGRPGKGSYWTLDPRCLDMFEHGNYRRRKRKPKP 147


>gi|109129439|ref|XP_001087392.1| PREDICTED: forkhead box protein L1 [Macaca mulatta]
          Length = 230

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S       KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHN
Sbjct: 41  SGRAETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           LSLNDCFVKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 101 LSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|47210051|emb|CAF92567.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 109

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 76/98 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI +   +RATL+ IY +I  +FP++  N++GWQNSIRHNLSLNDCF+
Sbjct: 12  KPPYSYIALIAMAIKSAPEQRATLSGIYQFIMERFPFYRDNRQGWQNSIRHNLSLNDCFI 71

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR 385
           KV +E     KG+YWTL  +  DMFENGNYRRR+R  R
Sbjct: 72  KVPREKGRPGKGSYWTLDARCLDMFENGNYRRRKRKAR 109


>gi|410984141|ref|XP_003998390.1| PREDICTED: uncharacterized protein LOC101094971 [Felis catus]
          Length = 402

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 75/100 (75%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLN+CF
Sbjct: 48  QKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNECF 107

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           VKV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 108 VKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 147


>gi|110808236|sp|Q28HT3.1|FOXI2_XENTR RecName: Full=Forkhead box protein I2
 gi|89271880|emb|CAJ83471.1| novel fork head domain containing protein [Xenopus (Silurana)
           tropicalis]
          Length = 368

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 77/97 (79%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY +LIAMAI NN  K+ TL++IY+Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSSLIAMAIQNNPEKKLTLSQIYSYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVARDDNDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|348508554|ref|XP_003441819.1| PREDICTED: forkhead box protein I2-like [Oreochromis niloticus]
          Length = 376

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 83/118 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N + K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 130 RPPYSYSALIAMAIQNAQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           KVA++     KGNYWTL    E MF+NGN+RR+R+ +  +      A P   +  AH+
Sbjct: 190 KVARDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSDLNGADSTALPLKSEDGAHK 247


>gi|410895415|ref|XP_003961195.1| PREDICTED: forkhead box protein I2-A-like [Takifugu rubripes]
          Length = 372

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 83/118 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N + K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 131 RPPYSYSALIAMAIQNAQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           KVA++     KGNYWTL    E MF+NGN+RR+R+ +  +      A P   +  AH+
Sbjct: 191 KVARDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSDITGAGSTALPVKSEDAAHK 248


>gi|189442474|gb|AAI67316.1| foxi2 protein [Xenopus (Silurana) tropicalis]
          Length = 369

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 77/97 (79%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY +LIAMAI NN  K+ TL++IY+Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSSLIAMAIQNNPEKKLTLSQIYSYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVARDDNDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|62858025|ref|NP_001016544.1| forkhead box protein I2 [Xenopus (Silurana) tropicalis]
 gi|213624351|gb|AAI70976.1| forkhead box I2 [Xenopus (Silurana) tropicalis]
 gi|213625617|gb|AAI70978.1| forkhead box I2 [Xenopus (Silurana) tropicalis]
          Length = 350

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 77/97 (79%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY +LIAMAI NN  K+ TL++IY+Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 106 RPPYSYSSLIAMAIQNNPEKKLTLSQIYSYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 165

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 166 KVARDDNDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 202


>gi|147899746|ref|NP_001089009.1| forkhead box protein I2-A [Xenopus laevis]
 gi|75570686|sp|Q5NDM2.1|FXI2A_XENLA RecName: Full=Forkhead box protein I2-A; AltName: Full=XlFoxI2-A
 gi|56550342|emb|CAI30462.1| fox factor [Xenopus laevis]
          Length = 369

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 76/97 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY +LIAMAI N   K+ TL++IYNY+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSSLIAMAIQNTPDKKLTLSQIYNYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVARDDHDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|213625137|gb|AAI69910.1| Fox factor [Xenopus laevis]
          Length = 369

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 76/97 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY +LIAMAI N   K+ TL++IYNY+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSSLIAMAIQNTPDKKLTLSQIYNYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVARDDHDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|213625139|gb|AAI69912.1| Fox factor [Xenopus laevis]
          Length = 369

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 76/97 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY +LIAMAI N   K+ TL++IYNY+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSSLIAMAIQNTPDKKLTLSQIYNYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVARDDHDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|441621470|ref|XP_004092893.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box L2 [Nomascus
           leucogenys]
          Length = 178

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/80 (73%), Positives = 67/80 (83%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+C
Sbjct: 52  AQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNEC 111

Query: 346 FVKVAKEGAGERKGNYWTLA 365
           F+KV +EG GERKGNYWT A
Sbjct: 112 FIKVPREGGGERKGNYWTGA 131


>gi|32140765|gb|AAO63568.1| foxi one [Danio rerio]
          Length = 419

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 76/97 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N + K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 183 RPPYSYSALIAMAIQNAQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 242

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 243 KVARDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 279


>gi|391339170|ref|XP_003743925.1| PREDICTED: forkhead box protein E4-like [Metaseiulus occidentalis]
          Length = 234

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 80/110 (72%), Gaps = 2/110 (1%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
           +KPPYSYVALI MAI ++  KR TL EIY YI  +FP+++K +KGWQNSIRHNLSLN CF
Sbjct: 36  DKPPYSYVALIDMAIKDSPKKRRTLNEIYRYIMKRFPFYKKERKGWQNSIRHNLSLNPCF 95

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRR--RMKRPVRTPSYNA 394
           +K+ +EGA + KGN WTL     DMF +GNY+RRR  R + P R   Y A
Sbjct: 96  MKIPREGASDGKGNDWTLHPAFLDMFPDGNYKRRRMKRQQGPFRLMDYAA 145


>gi|32189364|ref|NP_859424.1| forkhead box i1 [Danio rerio]
 gi|28207739|gb|AAO32141.1| forkhead transcription factor i1 [Danio rerio]
          Length = 377

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 76/97 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N + K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 141 RPPYSYSALIAMAIQNAQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 200

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 201 KVARDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 237


>gi|68085623|gb|AAH76476.2| Forkhead box I1 [Danio rerio]
 gi|182891584|gb|AAI64810.1| Foxi1 protein [Danio rerio]
          Length = 377

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 76/97 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N + K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 141 RPPYSYSALIAMAIQNAQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 200

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 201 KVARDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 237


>gi|563170|gb|AAA92042.1| FREAC-7, partial [Homo sapiens]
          Length = 106

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 75/99 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLNDCFV
Sbjct: 6   KPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNDCFV 65

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           KV +E     KG+YWTL  +  DMFENGNYRRR+R  +P
Sbjct: 66  KVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKP 104


>gi|148238217|ref|NP_001081619.1| forkhead box protein I1-B [Xenopus laevis]
 gi|82245687|sp|Q91905.1|FXI1B_XENLA RecName: Full=Forkhead box protein I1-B; Short=FoxI1-B;
           Short=FoxI1b; Short=xFoxI1b; AltName: Full=Fork head
           domain-related protein 2'; Short=xFD-2'; Short=xFD2'
 gi|511162|emb|CAA52365.1| fork head protein [Xenopus laevis]
 gi|213623356|gb|AAI69633.1| Fork head protein [Xenopus laevis]
 gi|213626558|gb|AAI69627.1| Fork head protein [Xenopus laevis]
          Length = 367

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 100/158 (63%), Gaps = 10/158 (6%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   KR TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 128 RPPYSYSALIAMAIQNASDKRLTLSQIYQYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 187

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQNL 407
           K+ ++     KGNYWTL +  E MF+NGN+RR+R+ K    + S NAK    D   H N 
Sbjct: 188 KMPRDENDPGKGNYWTLDSNCEKMFDNGNFRRKRKPK----SESNNAKIAKRDE-DHLNP 242

Query: 408 IGRD---IFSATASP--FSSRNTWSGPSPNNVYYPSCV 440
            G++   + + ++SP   S       PSP  V Y  C+
Sbjct: 243 KGKESPPMITPSSSPEVLSPTGHSKSPSPPTVTYTPCL 280


>gi|443706725|gb|ELU02639.1| hypothetical protein CAPTEDRAFT_49410, partial [Capitella teleta]
          Length = 103

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 75/99 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI +   ++ TL  IY +I  +FPY+  NK+GWQNSIRHNLSLNDCFV
Sbjct: 5   KPPYSYIALIAMAIKSAPGRKITLNGIYQFIMERFPYYHDNKQGWQNSIRHNLSLNDCFV 64

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           KV +E     KGNYWTL    EDMF++GNYRRR+R  +P
Sbjct: 65  KVPREKGKPGKGNYWTLDPNCEDMFDHGNYRRRKRRAKP 103


>gi|432924564|ref|XP_004080620.1| PREDICTED: forkhead box protein I2-A-like [Oryzias latipes]
          Length = 380

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 77/97 (79%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N++ K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 199 RPPYSYSALIAMAIQNSQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 258

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 259 KVARDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 295


>gi|291387800|ref|XP_002710417.1| PREDICTED: forkhead box I1 isoform 1 [Oryctolagus cuniculus]
          Length = 375

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV +E     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVPREEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|355691833|gb|EHH27018.1| hypothetical protein EGK_17116 [Macaca mulatta]
          Length = 378

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDDDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|306569651|gb|ADN03320.1| forkhead box I1 [Homo sapiens]
          Length = 378

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|73953482|ref|XP_546245.2| PREDICTED: forkhead box protein I1 isoform 1 [Canis lupus
           familiaris]
          Length = 378

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|355750411|gb|EHH54749.1| hypothetical protein EGM_15643 [Macaca fascicularis]
          Length = 350

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 74/100 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 95  RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 154

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K  V
Sbjct: 155 KVPRDDDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDV 194


>gi|55625400|ref|XP_527110.1| PREDICTED: forkhead box protein I1 isoform 2 [Pan troglodytes]
          Length = 378

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|109079702|ref|XP_001092246.1| PREDICTED: forkhead box protein I1 isoform 2 [Macaca mulatta]
 gi|402873365|ref|XP_003900548.1| PREDICTED: forkhead box protein I1 [Papio anubis]
          Length = 378

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDDDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|47214897|emb|CAG01028.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 303

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 83/118 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N + K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 96  RPPYSYSALIAMAIQNAQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 155

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQ 405
           KVA++     KGNYWTL    E MF+NGN+RR+R+ +  +      A P   +  AH+
Sbjct: 156 KVARDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSDMNGAGSAALPVKCEDGAHK 213


>gi|397479307|ref|XP_003810966.1| PREDICTED: forkhead box protein I1 isoform 1 [Pan paniscus]
          Length = 378

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|110808246|sp|Q63ZH2.2|FXI2B_XENLA RecName: Full=Forkhead box protein I2-B; AltName: Full=XlFoxI2-B
          Length = 367

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 79/106 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY +LIAM+I N   K+ TL++IYNY+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSSLIAMSIQNTPDKKLTLSQIYNYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYN 393
           KVA++     KGNYWTL    E MF+NGN+RR+R+ K  +    ++
Sbjct: 184 KVARDDNDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSEIVGAGFD 229


>gi|21618327|ref|NP_036320.2| forkhead box protein I1 isoform a [Homo sapiens]
 gi|150421552|sp|Q12951.3|FOXI1_HUMAN RecName: Full=Forkhead box protein I1; AltName:
           Full=Forkhead-related protein FKHL10; AltName:
           Full=Forkhead-related transcription factor 6;
           Short=FREAC-6; AltName: Full=Hepatocyte nuclear factor 3
           forkhead homolog 3; Short=HFH-3; Short=HNF-3/fork-head
           homolog 3
 gi|119581894|gb|EAW61490.1| forkhead box I1, isoform CRA_b [Homo sapiens]
 gi|208968411|dbj|BAG74044.1| forkhead box I1 [synthetic construct]
 gi|306569445|gb|ADN03217.1| forkhead box I1 [Homo sapiens]
 gi|306569447|gb|ADN03218.1| forkhead box I1 [Homo sapiens]
 gi|306569449|gb|ADN03219.1| forkhead box I1 [Homo sapiens]
 gi|306569451|gb|ADN03220.1| forkhead box I1 [Homo sapiens]
 gi|306569453|gb|ADN03221.1| forkhead box I1 [Homo sapiens]
 gi|306569455|gb|ADN03222.1| forkhead box I1 [Homo sapiens]
 gi|306569457|gb|ADN03223.1| forkhead box I1 [Homo sapiens]
 gi|306569459|gb|ADN03224.1| forkhead box I1 [Homo sapiens]
 gi|306569461|gb|ADN03225.1| forkhead box I1 [Homo sapiens]
 gi|306569463|gb|ADN03226.1| forkhead box I1 [Homo sapiens]
 gi|306569465|gb|ADN03227.1| forkhead box I1 [Homo sapiens]
 gi|306569467|gb|ADN03228.1| forkhead box I1 [Homo sapiens]
 gi|306569469|gb|ADN03229.1| forkhead box I1 [Homo sapiens]
 gi|306569471|gb|ADN03230.1| forkhead box I1 [Homo sapiens]
 gi|306569473|gb|ADN03231.1| forkhead box I1 [Homo sapiens]
 gi|306569475|gb|ADN03232.1| forkhead box I1 [Homo sapiens]
 gi|306569477|gb|ADN03233.1| forkhead box I1 [Homo sapiens]
 gi|306569479|gb|ADN03234.1| forkhead box I1 [Homo sapiens]
 gi|306569481|gb|ADN03235.1| forkhead box I1 [Homo sapiens]
 gi|306569483|gb|ADN03236.1| forkhead box I1 [Homo sapiens]
 gi|306569485|gb|ADN03237.1| forkhead box I1 [Homo sapiens]
 gi|306569487|gb|ADN03238.1| forkhead box I1 [Homo sapiens]
 gi|306569489|gb|ADN03239.1| forkhead box I1 [Homo sapiens]
 gi|306569491|gb|ADN03240.1| forkhead box I1 [Homo sapiens]
 gi|306569493|gb|ADN03241.1| forkhead box I1 [Homo sapiens]
 gi|306569495|gb|ADN03242.1| forkhead box I1 [Homo sapiens]
 gi|306569497|gb|ADN03243.1| forkhead box I1 [Homo sapiens]
 gi|306569499|gb|ADN03244.1| forkhead box I1 [Homo sapiens]
 gi|306569501|gb|ADN03245.1| forkhead box I1 [Homo sapiens]
 gi|306569503|gb|ADN03246.1| forkhead box I1 [Homo sapiens]
 gi|306569505|gb|ADN03247.1| forkhead box I1 [Homo sapiens]
 gi|306569507|gb|ADN03248.1| forkhead box I1 [Homo sapiens]
 gi|306569509|gb|ADN03249.1| forkhead box I1 [Homo sapiens]
 gi|306569511|gb|ADN03250.1| forkhead box I1 [Homo sapiens]
 gi|306569513|gb|ADN03251.1| forkhead box I1 [Homo sapiens]
 gi|306569515|gb|ADN03252.1| forkhead box I1 [Homo sapiens]
 gi|306569517|gb|ADN03253.1| forkhead box I1 [Homo sapiens]
 gi|306569519|gb|ADN03254.1| forkhead box I1 [Homo sapiens]
 gi|306569521|gb|ADN03255.1| forkhead box I1 [Homo sapiens]
 gi|306569523|gb|ADN03256.1| forkhead box I1 [Homo sapiens]
 gi|306569525|gb|ADN03257.1| forkhead box I1 [Homo sapiens]
 gi|306569527|gb|ADN03258.1| forkhead box I1 [Homo sapiens]
 gi|306569529|gb|ADN03259.1| forkhead box I1 [Homo sapiens]
 gi|306569531|gb|ADN03260.1| forkhead box I1 [Homo sapiens]
 gi|306569533|gb|ADN03261.1| forkhead box I1 [Homo sapiens]
 gi|306569535|gb|ADN03262.1| forkhead box I1 [Homo sapiens]
 gi|306569537|gb|ADN03263.1| forkhead box I1 [Homo sapiens]
 gi|306569539|gb|ADN03264.1| forkhead box I1 [Homo sapiens]
 gi|306569541|gb|ADN03265.1| forkhead box I1 [Homo sapiens]
 gi|306569543|gb|ADN03266.1| forkhead box I1 [Homo sapiens]
 gi|306569545|gb|ADN03267.1| forkhead box I1 [Homo sapiens]
 gi|306569547|gb|ADN03268.1| forkhead box I1 [Homo sapiens]
 gi|306569549|gb|ADN03269.1| forkhead box I1 [Homo sapiens]
 gi|306569551|gb|ADN03270.1| forkhead box I1 [Homo sapiens]
 gi|306569553|gb|ADN03271.1| forkhead box I1 [Homo sapiens]
 gi|306569555|gb|ADN03272.1| forkhead box I1 [Homo sapiens]
 gi|306569557|gb|ADN03273.1| forkhead box I1 [Homo sapiens]
 gi|306569559|gb|ADN03274.1| forkhead box I1 [Homo sapiens]
 gi|306569561|gb|ADN03275.1| forkhead box I1 [Homo sapiens]
 gi|306569563|gb|ADN03276.1| forkhead box I1 [Homo sapiens]
 gi|306569565|gb|ADN03277.1| forkhead box I1 [Homo sapiens]
 gi|306569567|gb|ADN03278.1| forkhead box I1 [Homo sapiens]
 gi|306569569|gb|ADN03279.1| forkhead box I1 [Homo sapiens]
 gi|306569571|gb|ADN03280.1| forkhead box I1 [Homo sapiens]
 gi|306569573|gb|ADN03281.1| forkhead box I1 [Homo sapiens]
 gi|306569575|gb|ADN03282.1| forkhead box I1 [Homo sapiens]
 gi|306569577|gb|ADN03283.1| forkhead box I1 [Homo sapiens]
 gi|306569579|gb|ADN03284.1| forkhead box I1 [Homo sapiens]
 gi|306569581|gb|ADN03285.1| forkhead box I1 [Homo sapiens]
 gi|306569583|gb|ADN03286.1| forkhead box I1 [Homo sapiens]
 gi|306569585|gb|ADN03287.1| forkhead box I1 [Homo sapiens]
 gi|306569587|gb|ADN03288.1| forkhead box I1 [Homo sapiens]
 gi|306569589|gb|ADN03289.1| forkhead box I1 [Homo sapiens]
 gi|306569591|gb|ADN03290.1| forkhead box I1 [Homo sapiens]
 gi|306569593|gb|ADN03291.1| forkhead box I1 [Homo sapiens]
 gi|306569595|gb|ADN03292.1| forkhead box I1 [Homo sapiens]
 gi|306569597|gb|ADN03293.1| forkhead box I1 [Homo sapiens]
 gi|306569599|gb|ADN03294.1| forkhead box I1 [Homo sapiens]
 gi|306569601|gb|ADN03295.1| forkhead box I1 [Homo sapiens]
 gi|306569603|gb|ADN03296.1| forkhead box I1 [Homo sapiens]
 gi|306569605|gb|ADN03297.1| forkhead box I1 [Homo sapiens]
 gi|306569607|gb|ADN03298.1| forkhead box I1 [Homo sapiens]
 gi|306569609|gb|ADN03299.1| forkhead box I1 [Homo sapiens]
 gi|306569611|gb|ADN03300.1| forkhead box I1 [Homo sapiens]
 gi|306569613|gb|ADN03301.1| forkhead box I1 [Homo sapiens]
 gi|306569615|gb|ADN03302.1| forkhead box I1 [Homo sapiens]
 gi|306569617|gb|ADN03303.1| forkhead box I1 [Homo sapiens]
 gi|306569619|gb|ADN03304.1| forkhead box I1 [Homo sapiens]
 gi|306569621|gb|ADN03305.1| forkhead box I1 [Homo sapiens]
 gi|306569623|gb|ADN03306.1| forkhead box I1 [Homo sapiens]
 gi|306569625|gb|ADN03307.1| forkhead box I1 [Homo sapiens]
 gi|306569627|gb|ADN03308.1| forkhead box I1 [Homo sapiens]
 gi|306569629|gb|ADN03309.1| forkhead box I1 [Homo sapiens]
 gi|306569631|gb|ADN03310.1| forkhead box I1 [Homo sapiens]
 gi|306569633|gb|ADN03311.1| forkhead box I1 [Homo sapiens]
 gi|306569635|gb|ADN03312.1| forkhead box I1 [Homo sapiens]
 gi|306569637|gb|ADN03313.1| forkhead box I1 [Homo sapiens]
 gi|306569639|gb|ADN03314.1| forkhead box I1 [Homo sapiens]
 gi|306569641|gb|ADN03315.1| forkhead box I1 [Homo sapiens]
 gi|306569643|gb|ADN03316.1| forkhead box I1 [Homo sapiens]
 gi|306569645|gb|ADN03317.1| forkhead box I1 [Homo sapiens]
 gi|306569647|gb|ADN03318.1| forkhead box I1 [Homo sapiens]
 gi|306569649|gb|ADN03319.1| forkhead box I1 [Homo sapiens]
 gi|306569653|gb|ADN03321.1| forkhead box I1 [Homo sapiens]
 gi|306569655|gb|ADN03322.1| forkhead box I1 [Homo sapiens]
 gi|306569657|gb|ADN03323.1| forkhead box I1 [Homo sapiens]
 gi|306569659|gb|ADN03324.1| forkhead box I1 [Homo sapiens]
 gi|306569661|gb|ADN03325.1| forkhead box I1 [Homo sapiens]
 gi|306569663|gb|ADN03326.1| forkhead box I1 [Homo sapiens]
 gi|306569665|gb|ADN03327.1| forkhead box I1 [Homo sapiens]
 gi|306569667|gb|ADN03328.1| forkhead box I1 [Homo sapiens]
 gi|306569669|gb|ADN03329.1| forkhead box I1 [Homo sapiens]
 gi|306569671|gb|ADN03330.1| forkhead box I1 [Homo sapiens]
 gi|306569673|gb|ADN03331.1| forkhead box I1 [Homo sapiens]
 gi|306569675|gb|ADN03332.1| forkhead box I1 [Homo sapiens]
 gi|306569677|gb|ADN03333.1| forkhead box I1 [Homo sapiens]
 gi|306569679|gb|ADN03334.1| forkhead box I1 [Homo sapiens]
 gi|306569681|gb|ADN03335.1| forkhead box I1 [Homo sapiens]
 gi|306569683|gb|ADN03336.1| forkhead box I1 [Homo sapiens]
          Length = 378

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|158257784|dbj|BAF84865.1| unnamed protein product [Homo sapiens]
          Length = 378

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|50418056|gb|AAH78036.1| Unknown (protein for MGC:82763) [Xenopus laevis]
          Length = 337

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 100/158 (63%), Gaps = 10/158 (6%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   KR TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 98  RPPYSYSALIAMAIQNASDKRLTLSQIYQYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 157

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQNL 407
           K+ ++     KGNYWTL +  E MF+NGN+RR+R+ K    + S NAK    D   H N 
Sbjct: 158 KMPRDENDPGKGNYWTLDSNCEKMFDNGNFRRKRKPK----SESNNAKIAKRDE-DHLNP 212

Query: 408 IGRD---IFSATASP--FSSRNTWSGPSPNNVYYPSCV 440
            G++   + + ++SP   S       PSP  V Y  C+
Sbjct: 213 KGKESPPMITPSSSPEVLSPTGHSKSPSPPTVTYTPCL 250


>gi|296193696|ref|XP_002744628.1| PREDICTED: forkhead box protein I1 [Callithrix jacchus]
          Length = 378

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|426350939|ref|XP_004043020.1| PREDICTED: forkhead box protein I1 isoform 1 [Gorilla gorilla
           gorilla]
          Length = 378

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|403290199|ref|XP_003936217.1| PREDICTED: forkhead box protein I1 [Saimiri boliviensis
           boliviensis]
          Length = 378

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|410949252|ref|XP_003981337.1| PREDICTED: forkhead box protein I1 isoform 1 [Felis catus]
          Length = 378

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|297676609|ref|XP_002816222.1| PREDICTED: forkhead box protein I1 isoform 1 [Pongo abelii]
          Length = 378

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|332239002|ref|XP_003268693.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein I1 [Nomascus
           leucogenys]
          Length = 378

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRITLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|147899569|ref|NP_001088107.1| forkhead box protein I2-B [Xenopus laevis]
 gi|52354731|gb|AAH82945.1| Foxi2-b protein [Xenopus laevis]
          Length = 349

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 77/100 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY +LIAM+I N   K+ TL++IYNY+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 106 RPPYSYSSLIAMSIQNTPDKKLTLSQIYNYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 165

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KVA++     KGNYWTL    E MF+NGN+RR+R+ K  +
Sbjct: 166 KVARDDNDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSEI 205


>gi|301792407|ref|XP_002931169.1| PREDICTED: forkhead box protein I1-like [Ailuropoda melanoleuca]
 gi|281349077|gb|EFB24661.1| hypothetical protein PANDA_021986 [Ailuropoda melanoleuca]
          Length = 378

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|47216800|emb|CAG10122.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 387

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 132 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 191

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 192 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 228


>gi|259013444|ref|NP_001158465.1| forkhead box C-like protein [Saccoglossus kowalevskii]
 gi|197320543|gb|ACH68433.1| forkhead box C-like protein [Saccoglossus kowalevskii]
          Length = 476

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 81/110 (73%), Gaps = 1/110 (0%)

Query: 277 SSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSI 336
           S+P  T  D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FP++ +NK+GWQNSI
Sbjct: 59  SAPHHTPKDMVKPPYSYIALIAMAIQNAPEKKVTLNGIYQFIMDRFPFYRENKQGWQNSI 118

Query: 337 RHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           RHNLSLNDCF+KV ++     KG+YW+L  +  +MF+NG+Y RRR+R K+
Sbjct: 119 RHNLSLNDCFIKVPRDDKKPGKGSYWSLDPESYNMFDNGSYLRRRKRFKK 168


>gi|311747|emb|CAA50746.1| fkh-6 [Mus musculus]
          Length = 111

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 75/100 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLN+CFV
Sbjct: 10  KPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNECFV 69

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV +E     KG+YWTL  +  DMFENGNYRRR+R  +P 
Sbjct: 70  KVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPA 109


>gi|351701158|gb|EHB04077.1| Forkhead box protein I1 [Heterocephalus glaber]
          Length = 379

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|122892611|gb|ABM67367.1| FOXI1 [Hylobates klossii]
          Length = 306

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 74/100 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 51  RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 110

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K  V
Sbjct: 111 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDV 150


>gi|190576693|gb|ACE79154.1| winged helix/forkhead transcription factor FoxC [Branchiostoma
           floridae]
          Length = 486

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 78/105 (74%), Gaps = 1/105 (0%)

Query: 282 TTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLS 341
           T+ D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLS
Sbjct: 79  TSKDMVKPPYSYIALIAMAIQNAPDKKVTLNGIYQFIMDRFPYYRENKQGWQNSIRHNLS 138

Query: 342 LNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           LN+CF+KV ++     KG+YW+L     +MF+NG+Y RRRRR K+
Sbjct: 139 LNECFIKVPRDDKKPGKGSYWSLDPDSYNMFDNGSYLRRRRRFKK 183


>gi|395817082|ref|XP_003782004.1| PREDICTED: forkhead box protein I1 [Otolemur garnettii]
          Length = 380

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|313231739|emb|CBY08852.1| unnamed protein product [Oikopleura dioica]
          Length = 334

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   KR TLA+IY Y+A  FP+++K++ GWQNSIRHNLSLNDCF 
Sbjct: 27  RPPYSYSALIAMAIQNAPEKRLTLAQIYQYVAENFPFYKKSRAGWQNSIRHNLSLNDCFK 86

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           K+ ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 87  KMPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 123


>gi|300795307|ref|NP_001179172.1| forkhead box protein I1 [Bos taurus]
 gi|296475947|tpg|DAA18062.1| TPA: forkhead box I1-like isoform 1 [Bos taurus]
          Length = 379

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|148221999|ref|NP_001080367.1| forkhead box protein I1-ema [Xenopus laevis]
 gi|82241632|sp|Q7ZYQ0.1|FXI1E_XENLA RecName: Full=Forkhead box protein I1-ema; Short=FoxI1-ema;
           AltName: Full=Ectodermally-expressed mesendoderm
           antagonist; Short=Xema; AltName: Full=FoxI3
 gi|27769129|gb|AAH42303.1| Foxi1 protein [Xenopus laevis]
 gi|66356298|gb|AAY45746.1| ectodermally-expressed mesendoderm antagonist [Xenopus laevis]
          Length = 373

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 74/100 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K  V
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDV 222


>gi|395505052|ref|XP_003756860.1| PREDICTED: forkhead box protein I1 [Sarcophilus harrisii]
          Length = 377

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 74/100 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 122 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 181

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K  V
Sbjct: 182 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDV 221


>gi|1911185|gb|AAB50574.1| forkhead box L1 [Homo sapiens]
          Length = 351

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 96  RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 155

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 156 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 192


>gi|33087229|gb|AAP92809.1| forkhead transcription factor i3 [Danio rerio]
          Length = 353

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 75/97 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+   ++R TL++IY Y+A  FP++ K+K  WQNSIRHNLSLNDCF+
Sbjct: 116 RPPYSYSALIAMAIHGAPNRRVTLSQIYQYVADNFPFYNKSKASWQNSIRHNLSLNDCFM 175

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++ +   KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 176 KVPRDDSDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 212


>gi|410914142|ref|XP_003970547.1| PREDICTED: forkhead box protein I1-ema-like [Takifugu rubripes]
          Length = 387

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 132 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 191

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 192 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 228


>gi|344265249|ref|XP_003404697.1| PREDICTED: forkhead box protein I1 isoform 1 [Loxodonta africana]
          Length = 378

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|238054023|ref|NP_001153932.1| forkhead box I2 [Oryzias latipes]
 gi|226441736|gb|ACO57470.1| forkhead box I2 [Oryzias latipes]
          Length = 391

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 133 RPPYSYSALIAMAIQNAHEKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 192

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 193 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 229


>gi|147906729|ref|NP_001081617.1| forkhead box protein I1-A [Xenopus laevis]
 gi|82245686|sp|Q91904.1|FXI1A_XENLA RecName: Full=Forkhead box protein I1-A; Short=FoxI1-A;
           Short=FoxI1a; Short=xFoxI1a; AltName: Full=Fork head
           domain-related protein 2; Short=xFD-2; Short=xFD2
 gi|511160|emb|CAA52364.1| fork head protein [Xenopus laevis]
          Length = 370

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 75/97 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAM+I N   KR TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 127 RPPYSYSALIAMSIQNATDKRLTLSQIYQYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 186

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           K+ ++     KGNYWTL +  E MF+NGN+RR+R+ K
Sbjct: 187 KMPRDENDPGKGNYWTLDSNCEKMFDNGNFRRKRKPK 223


>gi|311273948|ref|XP_003134114.1| PREDICTED: forkhead box protein I1 isoform 1 [Sus scrofa]
          Length = 378

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 124 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 184 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 220


>gi|432100004|gb|ELK28897.1| Forkhead box protein I1 [Myotis davidii]
          Length = 366

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 116 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADHFPFYNKSKAGWQNSIRHNLSLNDCFK 175

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 176 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 212


>gi|121223212|gb|ABM47718.1| FOXI1 [Saguinus labiatus]
          Length = 221

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 63  RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 122

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 123 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 159


>gi|431918131|gb|ELK17359.1| Forkhead box protein I1 [Pteropus alecto]
          Length = 377

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 125 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 184

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 185 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 221


>gi|190336912|gb|AAI62636.1| Forkhead box I3b [Danio rerio]
 gi|190339436|gb|AAI62346.1| Forkhead box I3b [Danio rerio]
          Length = 383

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    +R TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 130 RPPYSYSALIAMAIHGAPERRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 190 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 226


>gi|440889679|gb|ELR44677.1| Forkhead box protein I1, partial [Bos grunniens mutus]
          Length = 273

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 74/100 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 18  RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 77

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K  V
Sbjct: 78  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDV 117


>gi|129270185|ref|NP_944599.2| forkhead box I3a [Danio rerio]
 gi|126631958|gb|AAI33873.1| Forkhead box I3a [Danio rerio]
          Length = 353

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 75/97 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+   ++R TL++IY Y+A  FP++ K+K  WQNSIRHNLSLNDCF+
Sbjct: 116 RPPYSYSALIAMAIHGAPNRRLTLSQIYQYVADNFPFYNKSKASWQNSIRHNLSLNDCFM 175

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++ +   KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 176 KVPRDDSDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 212


>gi|348516711|ref|XP_003445881.1| PREDICTED: forkhead box protein I1-ema-like [Oreochromis niloticus]
          Length = 392

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 132 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 191

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 192 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 228


>gi|126290786|ref|XP_001370284.1| PREDICTED: forkhead box protein I1-like isoform 1 [Monodelphis
           domestica]
          Length = 377

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 75/102 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 122 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 181

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRT 389
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K  V +
Sbjct: 182 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDVTS 223


>gi|313211945|emb|CBY16051.1| unnamed protein product [Oikopleura dioica]
          Length = 464

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 81/110 (73%), Gaps = 1/110 (0%)

Query: 277 SSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSI 336
           ++P     D  KPPYSY+ALIAMAIN+   K+ TL  IY++I  +FPY+ +NK+GWQNSI
Sbjct: 73  TAPHLQPKDMVKPPYSYIALIAMAINSEPTKKITLNGIYSFIMERFPYYRENKQGWQNSI 132

Query: 337 RHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           RHNLSLN+CFVK+ ++     KG+YWTL     +MFENG+Y RRR+R K+
Sbjct: 133 RHNLSLNECFVKIPRDEKKPGKGSYWTLDPDAYNMFENGSYLRRRKRFKK 182


>gi|38708001|ref|NP_944600.1| forkhead box protein I1 [Danio rerio]
 gi|33087231|gb|AAP92810.1| forkhead transcription factor i3b [Danio rerio]
          Length = 383

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    +R TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 130 RPPYSYSALIAMAIHGAPERRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 190 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 226


>gi|348520610|ref|XP_003447820.1| PREDICTED: forkhead box protein I1c-like [Oreochromis niloticus]
          Length = 398

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 133 RPPYSYSALIAMAIQNAHEKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 192

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 193 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 229


>gi|313214931|emb|CBY41144.1| unnamed protein product [Oikopleura dioica]
 gi|313234919|emb|CBY24864.1| unnamed protein product [Oikopleura dioica]
          Length = 383

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   K+ TLA+IY Y+A  FP+++K++ GWQNSIRHNLSLNDCF 
Sbjct: 90  RPPYSYSALIAMAIQNAPDKKLTLAQIYLYVAENFPFYKKSRAGWQNSIRHNLSLNDCFK 149

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 150 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 186


>gi|45360553|ref|NP_988949.1| forkhead box protein I1-ema [Xenopus (Silurana) tropicalis]
 gi|82186634|sp|Q6P8A3.1|FXI1E_XENTR RecName: Full=Forkhead box protein I1-ema; Short=FoxI1-ema;
           AltName: Full=Ectodermally-expressed mesendoderm
           antagonist; AltName: Full=FoxI3
 gi|38174713|gb|AAH61326.1| forkhead box I1 [Xenopus (Silurana) tropicalis]
          Length = 373

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 74/100 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPV 387
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K  V
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDV 222


>gi|224068210|ref|XP_002194993.1| PREDICTED: forkhead box protein I1-ema-like [Taeniopygia guttata]
          Length = 375

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|194219613|ref|XP_001500146.2| PREDICTED: forkhead box protein I1-like [Equus caballus]
          Length = 358

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 104 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 163

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 164 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 200


>gi|50754836|ref|XP_425185.1| PREDICTED: forkhead box protein I1-ema isoform 2 [Gallus gallus]
          Length = 375

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPEKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|118343786|ref|NP_001071713.1| transcription factor protein [Ciona intestinalis]
 gi|70569610|dbj|BAE06443.1| transcription factor protein [Ciona intestinalis]
          Length = 581

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 76/97 (78%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N+  K+ TL++IY Y+A  FP+++K++ GWQNSIRHNLSLNDCF 
Sbjct: 258 RPPYSYSALIAMAIQNSPEKKLTLSQIYQYVAENFPFYKKSRAGWQNSIRHNLSLNDCFK 317

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KVA++     KGNYW+L    E MF+NGN+RR+R+ +
Sbjct: 318 KVARDEDDPGKGNYWSLDPNCEKMFDNGNFRRKRKRR 354


>gi|449267248|gb|EMC78214.1| Forkhead box protein I1-ema [Columba livia]
          Length = 375

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPEKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|326928283|ref|XP_003210310.1| PREDICTED: forkhead box protein I1-ema-like [Meleagris gallopavo]
          Length = 375

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPEKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 219


>gi|45361375|ref|NP_989265.1| forkhead box protein I1 [Xenopus (Silurana) tropicalis]
 gi|82186245|sp|Q6P2Z3.1|FOXI1_XENTR RecName: Full=Forkhead box protein I1; Short=FoxI1
 gi|39795838|gb|AAH64241.1| forkhead box I4, gene 2 [Xenopus (Silurana) tropicalis]
 gi|89267433|emb|CAJ81516.1| forkhead box I1 [Xenopus (Silurana) tropicalis]
          Length = 363

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 125 RPPYSYSALIAMAIQHASDRRLTLSQIYQYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 184

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 185 KVPRDENDPGKGNYWTLDPNCEKMFDNGNFRRKRKPK 221


>gi|410898790|ref|XP_003962880.1| PREDICTED: forkhead box protein I1c-like [Takifugu rubripes]
          Length = 398

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 138 RPPYSYSALIAMAIQNAHEKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 197

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 198 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 234


>gi|327265172|ref|XP_003217382.1| PREDICTED: forkhead box protein I1-ema-like [Anolis carolinensis]
          Length = 375

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKKK 219


>gi|57337372|emb|CAH69694.1| forkhead transcription factor [Branchiostoma floridae]
          Length = 497

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 78/105 (74%), Gaps = 1/105 (0%)

Query: 282 TTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLS 341
           T+ D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLS
Sbjct: 42  TSKDMVKPPYSYIALIAMAIQNAPDKKVTLNGIYQFIMDRFPYYRENKQGWQNSIRHNLS 101

Query: 342 LNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           LN+CF+KV ++     KG+YW+L     +MF+NG+Y RRRRR K+
Sbjct: 102 LNECFIKVPRDDKKPGKGSYWSLDPDSYNMFDNGSYLRRRRRFKK 146


>gi|348539150|ref|XP_003457052.1| PREDICTED: hypothetical protein LOC100693567 [Oreochromis
           niloticus]
          Length = 580

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 74/102 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y++  FP++ ++K GWQNSIRHNLSLNDCF 
Sbjct: 302 RPPYSYSALIAMAIKSAPEQRLTLSQIYQYVSDNFPFYSRSKAGWQNSIRHNLSLNDCFQ 361

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRT 389
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K    T
Sbjct: 362 KVPRDERDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKNDCET 403


>gi|426246743|ref|XP_004017149.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein I1 [Ovis
           aries]
          Length = 433

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 182 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 241

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 242 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 278


>gi|51258370|gb|AAH80044.1| XFD2 protein [Xenopus laevis]
          Length = 340

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAM+I N   KR TL++IY Y+A  FP+++K K GWQNSIRHNLSLNDCF 
Sbjct: 97  RPPYSYSALIAMSIQNATDKRLTLSQIYQYVAENFPFYKKCKAGWQNSIRHNLSLNDCFK 156

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           K+ ++     KGNYWTL +  E MF+NGN+RR+R+ K
Sbjct: 157 KMPRDENDPGKGNYWTLDSNCEKMFDNGNFRRKRKPK 193


>gi|387016000|gb|AFJ50119.1| Forkhead box protein I1-ema-like [Crotalus adamanteus]
          Length = 371

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    KR TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKKK 219


>gi|157786598|ref|NP_001099246.1| forkhead box protein I1 [Rattus norvegicus]
 gi|149052268|gb|EDM04085.1| forkhead box I1 (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 372

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    +R TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 117 RPPYSYSALIAMAIHGAPDQRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 176

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 177 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 213


>gi|410914914|ref|XP_003970932.1| PREDICTED: forkhead box protein I1-ema-like [Takifugu rubripes]
          Length = 347

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 72/97 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y++  FP++  NK GWQNSIRHNLSLNDCF 
Sbjct: 112 RPPYSYSALIAMAIQSVPEQRMTLSQIYQYVSNNFPFYSCNKSGWQNSIRHNLSLNDCFQ 171

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ K
Sbjct: 172 KVPRDENDPGKGNYWTLDPNCEKMFDNGNFRRKRKRK 208


>gi|313213355|emb|CBY37180.1| unnamed protein product [Oikopleura dioica]
          Length = 382

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAIN+   K+ TL  IY++I  +FPY+ +NK+GWQNSIRHNLSLN+CFV
Sbjct: 2   KPPYSYIALIAMAINSEPTKKITLNGIYSFIMERFPYYRENKQGWQNSIRHNLSLNECFV 61

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           K+ ++     KG+YWTL     +MFENG+Y RRR+R K+
Sbjct: 62  KIPRDEKKPGKGSYWTLDPDAYNMFENGSYLRRRKRFKK 100


>gi|17531283|ref|NP_494775.1| Protein FKH-6 [Caenorhabditis elegans]
 gi|351065676|emb|CCD61668.1| Protein FKH-6 [Caenorhabditis elegans]
          Length = 323

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 76/102 (74%), Gaps = 7/102 (6%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFE----KNKKGWQNSIRHNLSL 342
           +KPPYSYVALIAMAI+ +  KR TL +IY +I  KFPY+     K K+GWQNSIRHNLSL
Sbjct: 20  DKPPYSYVALIAMAIDASPDKRMTLNQIYKFIEAKFPYYRDADAKRKQGWQNSIRHNLSL 79

Query: 343 NDCFVKVAKEG---AGERKGNYWTLATKHEDMFENGNYRRRR 381
           NDCFVK A++G   A +RKGNYW +   +   F+NGN++RRR
Sbjct: 80  NDCFVKKARDGQSCANDRKGNYWQMVADNAPQFDNGNFKRRR 121


>gi|268529658|ref|XP_002629955.1| C. briggsae CBR-FKH-6 protein [Caenorhabditis briggsae]
          Length = 327

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 79/114 (69%), Gaps = 7/114 (6%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFE----KNKKGWQNSIRHNLS 341
           ++KPPYSYVALIAMAI  +  KR TL +IY +I  KFPY+     K K+GWQNSIRHNLS
Sbjct: 19  TDKPPYSYVALIAMAIEASPDKRMTLNQIYKFIEAKFPYYRDCDAKRKQGWQNSIRHNLS 78

Query: 342 LNDCFVKVAKEG---AGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSY 392
           LNDCFVK A++G   A +RKGNYW +   +   F+NGN++RRR  +  +    Y
Sbjct: 79  LNDCFVKKARDGQSCANDRKGNYWQMVADNAPQFDNGNFKRRRVKRMGISKMGY 132


>gi|355689175|gb|AER98743.1| forkhead box S1 [Mustela putorius furo]
          Length = 338

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 79/116 (68%)

Query: 262 PDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVK 321
           PD  +  S++   P+  P +   +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +
Sbjct: 1   PDRPAQPSMQQQQPLPGPLAPAAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGR 60

Query: 322 FPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           F ++  N+ GWQNSIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 61  FAFYRHNRPGWQNSIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 116


>gi|348588204|ref|XP_003479857.1| PREDICTED: forkhead box protein I2-like [Cavia porcellus]
          Length = 318

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 75/97 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 103 RPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 162

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV +E +   KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 163 KVPREESDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 199


>gi|395853566|ref|XP_003799276.1| PREDICTED: forkhead box protein I3, partial [Otolemur garnettii]
          Length = 316

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 41  RPPYSYSALIAMAIQNAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 100

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 101 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 137


>gi|363733664|ref|XP_426357.3| PREDICTED: forkhead box protein I1c [Gallus gallus]
          Length = 357

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/119 (51%), Positives = 82/119 (68%), Gaps = 1/119 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 93  RPPYSYSALIAMAIQSAPERKLTLSHIYQYVAENFPFYKRSKAGWQNSIRHNLSLNDCFR 152

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKP-YLGDMYAHQ 405
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +    TP+  A    LG + A +
Sbjct: 153 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSEPNTPATTAAASSLGGLKAEE 211


>gi|47228803|emb|CAG07535.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 131

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 79/101 (78%), Gaps = 1/101 (0%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPP+SYVALIAMAI  +  KR TL  IY+ I+ +FP++ + KKGWQNS+RHNLSLNDCF
Sbjct: 30  QKPPHSYVALIAMAIGESPDKRLTLRGIYDSISARFPFYSREKKGWQNSVRHNLSLNDCF 89

Query: 347 VKV-AKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           +KV  ++  G+RKGNYW L    EDMFE G+YRRRRRMK+P
Sbjct: 90  LKVPIRDTGGDRKGNYWVLDPAFEDMFERGDYRRRRRMKKP 130


>gi|308484263|ref|XP_003104332.1| CRE-FKH-6 protein [Caenorhabditis remanei]
 gi|308258301|gb|EFP02254.1| CRE-FKH-6 protein [Caenorhabditis remanei]
          Length = 368

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 74/101 (73%), Gaps = 7/101 (6%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFE----KNKKGWQNSIRHNLSLN 343
           KPPYSYVALIAMAI  +  KR TL +IY +I  KFPY+     K K+GWQNSIRHNLSLN
Sbjct: 21  KPPYSYVALIAMAIEASPDKRMTLNQIYKFIEAKFPYYRDADAKRKQGWQNSIRHNLSLN 80

Query: 344 DCFVKVAKEG---AGERKGNYWTLATKHEDMFENGNYRRRR 381
           DCFVK A++G   A +RKGNYW +   +   F+NGN++RRR
Sbjct: 81  DCFVKKARDGQSCANDRKGNYWQMVADNAPQFDNGNFKRRR 121


>gi|345792583|ref|XP_854369.2| PREDICTED: forkhead box protein I2 [Canis lupus familiaris]
          Length = 320

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 75/108 (69%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAM I +   +R TL +IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 117 RPPYSYSALIAMPIQSAPRRRLTLCQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 176

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAK 395
           KV +E     KGNYWTL    E MF+NGN+RR+R+ +  V      A+
Sbjct: 177 KVPREEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKKRGEVGAAGSGAR 224


>gi|395752182|ref|XP_003779378.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein S1 [Pongo
           abelii]
          Length = 307

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 75/103 (72%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P + TT+  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPGAPTTEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|344247556|gb|EGW03660.1| Forkhead box protein I3 [Cricetulus griseus]
          Length = 269

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI ++  ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 5   RPPYSYSALIAMAIQSSPERKLTLSHIYQFVADNFPFYQRSKAGWQNSIRHNLSLNDCFK 64

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 65  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 101


>gi|284005014|ref|NP_001164676.1| fork-head box A/B transcription factor [Saccoglossus kowalevskii]
 gi|283464167|gb|ADB22667.1| fork-head box A/B transcription factor [Saccoglossus kowalevskii]
          Length = 312

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 95/173 (54%), Gaps = 20/173 (11%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAM++ N +    TL E+Y +I  KFPYF +N++ WQNSIRHNLSLNDCFV
Sbjct: 78  KPPYSYIALIAMSLENAQDGMLTLNEVYEFIMNKFPYFRENQQRWQNSIRHNLSLNDCFV 137

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQNL 407
           K+ +      KGNYW L     DMF NG+Y RR +  +  R  +  A+      Y H NL
Sbjct: 138 KIPRAPGRAGKGNYWALHPAARDMFANGSYLRRAKRFKLGRRRNEPAQIQHVSSYGHFNL 197

Query: 408 IGRDIFSATAS-------PFSSR-------NTWSG------PSPNNVYYPSCV 440
            G  I +   S       P  +R       ++W+G       S N  YYPS +
Sbjct: 198 FGSGIAAPACSYQGIDSIPVQARPMENHHTDSWNGLNSALSSSCNTAYYPSSL 250


>gi|301755174|ref|XP_002913428.1| PREDICTED: forkhead box protein L1-like [Ailuropoda melanoleuca]
 gi|281339951|gb|EFB15535.1| hypothetical protein PANDA_001233 [Ailuropoda melanoleuca]
          Length = 346

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 68/91 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N++GWQNSIRHNLSLNDCF
Sbjct: 48  QKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNDCF 107

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           VKV +E     KG+YWTL  +  DMFENGNY
Sbjct: 108 VKVPREKGRPGKGSYWTLDPRCLDMFENGNY 138


>gi|357618527|gb|EHJ71472.1| hypothetical protein KGM_16342 [Danaus plexippus]
          Length = 297

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 73/101 (72%), Gaps = 1/101 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I  +I  +FPY+ +    WQNSIRHNLSLNDCF+
Sbjct: 93  KPPYSYIALITMAILQSPHKKLTLSGICEFIMTRFPYYREKFPAWQNSIRHNLSLNDCFI 152

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPV 387
           K+ +E     KGNYWTL    EDMF+NG++ RRR+R KRP 
Sbjct: 153 KIPREPGNPGKGNYWTLDPLAEDMFDNGSFLRRRKRYKRPA 193


>gi|114681437|ref|XP_001154081.1| PREDICTED: forkhead box protein S1 [Pan troglodytes]
 gi|397487437|ref|XP_003814806.1| PREDICTED: forkhead box protein S1 [Pan paniscus]
 gi|410207410|gb|JAA00924.1| forkhead box S1 [Pan troglodytes]
 gi|410249668|gb|JAA12801.1| forkhead box S1 [Pan troglodytes]
          Length = 330

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 75/103 (72%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P + TT+  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPGAPTTEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|28973785|ref|NP_004109.1| forkhead box protein S1 [Homo sapiens]
 gi|57015282|sp|O43638.2|FOXS1_HUMAN RecName: Full=Forkhead box protein S1; AltName: Full=Forkhead-like
           18 protein; AltName: Full=Forkhead-related transcription
           factor 10; Short=FREAC-10
 gi|15426574|gb|AAH13408.1| Forkhead box S1 [Homo sapiens]
 gi|32879879|gb|AAP88770.1| forkhead-like 18 (Drosophila) [Homo sapiens]
 gi|61362600|gb|AAX42250.1| forkhead-like 18 [synthetic construct]
 gi|119596819|gb|EAW76413.1| hCG2019197 [Homo sapiens]
 gi|123999036|gb|ABM87104.1| forkhead-like 18 (Drosophila) [synthetic construct]
 gi|157929114|gb|ABW03842.1| forkhead-like 18 (Drosophila) [synthetic construct]
 gi|208968419|dbj|BAG74048.1| forkhead-like 18 [synthetic construct]
          Length = 330

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 75/103 (72%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P + TT+  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPGAPTTEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|156366825|ref|XP_001627122.1| predicted protein [Nematostella vectensis]
 gi|74419006|gb|ABA03228.1| forkhead domain protein 1 [Nematostella vectensis]
 gi|156214022|gb|EDO35022.1| predicted protein [Nematostella vectensis]
          Length = 285

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFE-KNKKGWQNSIRHNLSLNDCF 346
           KPPYSYVALI+MAI  +  ++ TL  IY++I   FPY+  +NK+GWQNSIRHNLSLN CF
Sbjct: 61  KPPYSYVALISMAIKQSPGRKITLNGIYHFITSAFPYYTWQNKRGWQNSIRHNLSLNRCF 120

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           VKV +E A   KG YWTL   +E+MFE+G Y RRRR K+P
Sbjct: 121 VKVHREKADPGKGCYWTLDPAYEEMFEDGKYWRRRRTKKP 160


>gi|260826664|ref|XP_002608285.1| hypothetical protein BRAFLDRAFT_87965 [Branchiostoma floridae]
 gi|229293636|gb|EEN64295.1| hypothetical protein BRAFLDRAFT_87965 [Branchiostoma floridae]
          Length = 344

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 72/97 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI     K+ TL+ IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 111 RPPYSYSALIAMAIQAAPEKKLTLSGIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 170

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 171 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 207


>gi|354483541|ref|XP_003503951.1| PREDICTED: forkhead box protein I3-like [Cricetulus griseus]
          Length = 322

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI ++  ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 58  RPPYSYSALIAMAIQSSPERKLTLSHIYQFVADNFPFYQRSKAGWQNSIRHNLSLNDCFK 117

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 118 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 154


>gi|341882262|gb|EGT38197.1| hypothetical protein CAEBREN_14267 [Caenorhabditis brenneri]
          Length = 351

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 7/102 (6%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFE----KNKKGWQNSIRHNLSL 342
           +KPPYSYVALI+MAI  +  KR TL +IY +I  KFPY+     K K+GWQNSIRHNLSL
Sbjct: 20  DKPPYSYVALISMAIEASPDKRMTLNQIYKFIEAKFPYYRDVDPKRKQGWQNSIRHNLSL 79

Query: 343 NDCFVKVAKEG---AGERKGNYWTLATKHEDMFENGNYRRRR 381
           NDCFVK A++G   A +RKGNYW +   +   F+NGN++RRR
Sbjct: 80  NDCFVKKARDGQSCANDRKGNYWEMVADNAPQFDNGNFKRRR 121


>gi|284005018|ref|NP_001164677.1| fork-head box D transcription factor [Saccoglossus kowalevskii]
 gi|283464169|gb|ADB22668.1| fork-head box D transcription factor [Saccoglossus kowalevskii]
          Length = 388

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 81/127 (63%), Gaps = 8/127 (6%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MA+  +  KR TL+ I  +I  +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 136 KPPYSYIALITMAVLQSPQKRLTLSGICEFIMNRFPYYRERFPVWQNSIRHNLSLNDCFV 195

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR----PVRTPSYNAKPYLGDMY 402
           K+ +E     KGNYWTL    EDMF+NG++ RRR+R KR    P+R P+        D Y
Sbjct: 196 KIPREPGNPGKGNYWTLDPASEDMFDNGSFLRRRKRYKRQHPDPLREPTAFMT---TDPY 252

Query: 403 AHQNLIG 409
            H  L G
Sbjct: 253 GHHFLFG 259


>gi|358254924|dbj|GAA56585.1| forkhead box protein L1 [Clonorchis sinensis]
          Length = 531

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 85/123 (69%), Gaps = 5/123 (4%)

Query: 258 SSPPPDESSSTSIKVSSPIS-SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYN 316
           SS PP  S S++    SP+  + S  T    KPPYSY+ALIAMAI     ++ TL  IY 
Sbjct: 181 SSTPPTPSMSSN----SPVGPNASGNTYPVTKPPYSYIALIAMAIKYAPGRKITLNGIYR 236

Query: 317 YIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +I   FPY+  N++GWQNSIRHNLSLNDCFVK+ ++ +   KGNYWTL+T  ++MFE+GN
Sbjct: 237 FIMENFPYYRDNRQGWQNSIRHNLSLNDCFVKLPRDKSRPGKGNYWTLSTNADEMFEHGN 296

Query: 377 YRR 379
           YR+
Sbjct: 297 YRK 299


>gi|328709854|ref|XP_003244090.1| PREDICTED: hypothetical protein LOC100167072 [Acyrthosiphon pisum]
          Length = 561

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 73/104 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I  +I  +FPY+      WQNSIRHNLSLNDCF+
Sbjct: 202 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYRDKFPAWQNSIRHNLSLNDCFI 261

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPS 391
           K+ +E     KGNYWTL    EDMF+NG++ RRR+  + ++ PS
Sbjct: 262 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRMQAPS 305


>gi|351709669|gb|EHB12588.1| Forkhead box protein I2 [Heterocephalus glaber]
          Length = 328

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 118 RPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 177

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 178 KVPRDENDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 214


>gi|301773936|ref|XP_002922377.1| PREDICTED: forkhead box protein I3-like, partial [Ailuropoda
           melanoleuca]
          Length = 296

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 21  RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 80

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 81  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 117


>gi|281339172|gb|EFB14756.1| hypothetical protein PANDA_011349 [Ailuropoda melanoleuca]
          Length = 291

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 16  RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 75

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 76  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 112


>gi|300794065|ref|NP_001179878.1| forkhead box protein I2 [Bos taurus]
 gi|296472554|tpg|DAA14669.1| TPA: forkhead box I2-like [Bos taurus]
          Length = 312

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 97  RPPYSYSALIAMAIQSAPRRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 156

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 157 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 193


>gi|296223323|ref|XP_002757613.1| PREDICTED: forkhead box protein I3 [Callithrix jacchus]
          Length = 346

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 82/119 (68%), Gaps = 3/119 (2%)

Query: 269 SIKVSSP-ISSPSSTTTDSN--KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYF 325
           S++V+ P +  P S        +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP++
Sbjct: 50  SLRVNGPGVGGPPSAAAAXXXVRPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFY 109

Query: 326 EKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           +++K GWQNSIRHNLSLNDCF KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 110 QRSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 168


>gi|444726746|gb|ELW67266.1| Forkhead box protein I2 [Tupaia chinensis]
          Length = 357

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 143 RPPYSYSALIAMAIQSAPLRKLTLSQIYQYVASNFPFYKRSKAGWQNSIRHNLSLNDCFK 202

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 203 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 239


>gi|119597477|gb|EAW77071.1| hCG33270 [Homo sapiens]
          Length = 516

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 3   RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 62

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 63  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 99


>gi|449501478|ref|XP_004176872.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein I1c-like
           [Taeniopygia guttata]
          Length = 399

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 82/119 (68%), Gaps = 1/119 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 135 RPPYSYSALIAMAIQSAPERKLTLSHIYQYVAENFPFYKRSKAGWQNSIRHNLSLNDCFR 194

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPS-YNAKPYLGDMYAHQ 405
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +     P+  +A   LG + A +
Sbjct: 195 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSEPNAPATASATSSLGGLKAEE 253


>gi|311272025|ref|XP_001928269.2| PREDICTED: forkhead box protein I2-like [Sus scrofa]
          Length = 312

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 97  RPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 156

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 157 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 193


>gi|345496496|ref|XP_001601800.2| PREDICTED: hypothetical protein LOC100117617 [Nasonia vitripennis]
          Length = 503

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 68  DMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 127

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           CFVKV ++     KG+YW+L     +MF+NG+Y RRRRR K+
Sbjct: 128 CFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSYLRRRRRFKK 169


>gi|426226364|ref|XP_004007314.1| PREDICTED: forkhead box protein I3 [Ovis aries]
          Length = 364

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 88  RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 147

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 148 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 184


>gi|172087324|ref|XP_001913204.1| forkhead box protein C1 [Oikopleura dioica]
 gi|48994312|gb|AAT47886.1| forkhead box protein C1 [Oikopleura dioica]
          Length = 307

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 80/109 (73%), Gaps = 1/109 (0%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           S  ++  +  KPPYSY+ALI+MAIN+ + +R TL+ IY +I+ KFPY+   K+GWQNSIR
Sbjct: 64  SAKTSKNEMVKPPYSYIALISMAINSKKDRRITLSGIYKFISDKFPYYRDTKQGWQNSIR 123

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           HNLSLN+CF+K A+      KG++WTL     +MFENG+Y RRRRR K+
Sbjct: 124 HNLSLNECFIKEARIDKKRGKGSFWTLDPDAFNMFENGSYLRRRRRFKK 172


>gi|297266491|ref|XP_001088994.2| PREDICTED: forkhead box protein I3-like, partial [Macaca mulatta]
          Length = 323

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 48  RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 107

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 108 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 144


>gi|332813754|ref|XP_525808.3| PREDICTED: forkhead box protein I3, partial [Pan troglodytes]
          Length = 393

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 118 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 177

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 178 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 214


>gi|426336324|ref|XP_004031425.1| PREDICTED: forkhead box protein I3 [Gorilla gorilla gorilla]
          Length = 374

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 99  RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 158

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 159 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 195


>gi|363735423|ref|XP_003641555.1| PREDICTED: forkhead box protein I1-ema-like [Gallus gallus]
          Length = 174

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI++   +R TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 53  RPPYSYSALIAMAIHSAPGRRRTLSQIYQYVAENFPFYKKSKAGWQNSIRHNLSLNDCFR 112

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +RP
Sbjct: 113 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRK-RRP 150


>gi|440891442|gb|ELR45124.1| Forkhead box protein I3, partial [Bos grunniens mutus]
          Length = 294

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 18  RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 77

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 78  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 114


>gi|297460002|ref|XP_002700845.1| PREDICTED: forkhead box protein I3, partial [Bos taurus]
          Length = 307

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 31  RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 90

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 91  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 127


>gi|344297526|ref|XP_003420448.1| PREDICTED: forkhead box protein I3-like [Loxodonta africana]
          Length = 460

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 184 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 243

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 244 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 280


>gi|431916942|gb|ELK16698.1| Forkhead box protein L2 [Pteropus alecto]
          Length = 332

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 63/79 (79%)

Query: 299 MAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERK 358
           MAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV +EG GERK
Sbjct: 1   MAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERK 60

Query: 359 GNYWTLATKHEDMFENGNY 377
           GNYWTL    EDMFE GNY
Sbjct: 61  GNYWTLDPACEDMFEKGNY 79


>gi|351696510|gb|EHA99428.1| Forkhead box protein I3 [Heterocephalus glaber]
          Length = 282

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 12  RPPYSYSALIAMAIQSAPERKLTLSHIYQYVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 71

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 72  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 108


>gi|341889041|gb|EGT44976.1| CBN-UNC-130 protein [Caenorhabditis brenneri]
          Length = 334

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 73/96 (76%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
           +KPPYSY+ALIAM+I N+  K+ TL+EI ++I  +F Y+++    WQNSIRHNLSLNDCF
Sbjct: 130 SKPPYSYIALIAMSILNSPEKKLTLSEICDFIMNRFDYYKEKFPAWQNSIRHNLSLNDCF 189

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           VKV +      KGNYWTL  K EDMF+NG++ RRR+
Sbjct: 190 VKVPRGPGNPGKGNYWTLDPKCEDMFDNGSFLRRRK 225


>gi|327275375|ref|XP_003222449.1| PREDICTED: forkhead box protein I1c-like [Anolis carolinensis]
          Length = 396

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 138 RPPYSYSALIAMAIQSAPERKLTLSHIYQYVAENFPFYKRSKAGWQNSIRHNLSLNDCFR 197

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 198 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 234


>gi|296482509|tpg|DAA24624.1| TPA: forkhead box I3-like [Bos taurus]
          Length = 414

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 138 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 197

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 198 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 234


>gi|358332462|dbj|GAA38059.2| fork head domain-containing protein FD3 [Clonorchis sinensis]
          Length = 518

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 84/141 (59%), Gaps = 12/141 (8%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSY+ALI MAI ++ H+R TL  I ++I  +FPY+ +    WQNSIRHNLSLNDC
Sbjct: 141 SVKPPYSYIALITMAILHSPHRRLTLGGICDFIMSRFPYYRERFPAWQNSIRHNLSLNDC 200

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNAKPYLGDMYAH 404
           FVK+ +E     KGNYW L     DMF+NG++ RRR+R KR            L  M + 
Sbjct: 201 FVKIPREPGNPGKGNYWMLDPNSVDMFDNGSFLRRRKRYKR-----------ILQPMNSG 249

Query: 405 QNLIGRDIFSATASPFSSRNT 425
           + ++G   F +     S R T
Sbjct: 250 EQVMGTKRFCSVVDVLSQRIT 270


>gi|195122164|ref|XP_002005582.1| GI20546 [Drosophila mojavensis]
 gi|193910650|gb|EDW09517.1| GI20546 [Drosophila mojavensis]
          Length = 481

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 94  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 153

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 154 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 192


>gi|162415191|gb|ABX89143.1| forkhead B [Patiria miniata]
          Length = 206

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 107/189 (56%), Gaps = 13/189 (6%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P+ +T    KPPYSY++L AMAI N+  K   L++IY +I  +FPY+ KN + WQNS+RH
Sbjct: 4   PARSTYSDAKPPYSYISLTAMAIQNSGEKMLPLSDIYKFIMDRFPYYRKNTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRP-VRTPSYNAKP 396
           NLS NDCF+K+ +      KG+YW L     DMFENG++ RRR+R K P +    +N + 
Sbjct: 64  NLSFNDCFIKIPRRPDRPGKGSYWALHPLSADMFENGSFLRRRKRFKSPRITAIDHNLQI 123

Query: 397 YLGD---MYAHQNLIGRDIFSATASPFSSRNTWSGPSPNNVYYPSCVRALPPTSP--YSF 451
              D   ++  Q  IG   F+A      S + ++ P P+     +C  A  PT P  + F
Sbjct: 124 KQIDSAKIFQEQAKIGLPPFAA----LGSLSPYAVPVPSMAM--TCCTASSPTYPSKHGF 177

Query: 452 PPYASPTSK 460
            P  SPT K
Sbjct: 178 IPSTSPTMK 186


>gi|402514802|gb|AFQ62057.1| forkhead box L2, partial [Rana sylvatica]
          Length = 163

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 63/79 (79%)

Query: 299 MAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERK 358
           MAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV +EG GERK
Sbjct: 1   MAIRESPEKRLTLSAIYQYIISKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERK 60

Query: 359 GNYWTLATKHEDMFENGNY 377
           GNYWTL    EDMFE GNY
Sbjct: 61  GNYWTLDPACEDMFEKGNY 79


>gi|344296065|ref|XP_003419730.1| PREDICTED: forkhead box protein I2-like [Loxodonta africana]
          Length = 582

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 73/102 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP++++ K GWQNSIRHNLSLNDCF 
Sbjct: 372 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRCKAGWQNSIRHNLSLNDCFK 431

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRT 389
           KV ++     KGNYWTL    E MF+NG +RR+R+ +   R 
Sbjct: 432 KVPRDEDDPGKGNYWTLDPNCEKMFDNGTFRRKRKRRGEARA 473


>gi|208431824|ref|NP_001129121.1| forkhead box protein I3 [Homo sapiens]
 gi|229464468|sp|A8MTJ6.3|FOXI3_HUMAN RecName: Full=Forkhead box protein I3
 gi|205362900|tpe|CAR63508.1| TPA: forkhead box I3 [Homo sapiens]
 gi|205362902|tpe|CAR63509.1| TPA: forkhead box I3 [Homo sapiens]
          Length = 420

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 145 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 204

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 205 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 241


>gi|195028702|ref|XP_001987215.1| GH21797 [Drosophila grimshawi]
 gi|193903215|gb|EDW02082.1| GH21797 [Drosophila grimshawi]
          Length = 456

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 79  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 138

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 139 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 177


>gi|359070184|ref|XP_002691400.2| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein I3 [Bos
           taurus]
          Length = 422

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 146 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 205

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 206 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 242


>gi|332239284|ref|XP_003268836.1| PREDICTED: forkhead box protein I3 [Nomascus leucogenys]
          Length = 420

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 145 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 204

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 205 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 241


>gi|431906536|gb|ELK10658.1| Forkhead box protein I3 [Pteropus alecto]
          Length = 288

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 12  RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 71

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     +GNYWTL    E MF+NGN+RR+R+ +
Sbjct: 72  KVPRDEDDPGEGNYWTLDPNCEKMFDNGNFRRKRKRR 108


>gi|334313329|ref|XP_001379310.2| PREDICTED: forkhead box protein I3-like [Monodelphis domestica]
          Length = 405

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 164 RPPYSYSALIAMAIQNAPERKLTLSHIYQFVAESFPFYKRSKAGWQNSIRHNLSLNDCFK 223

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 224 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 260


>gi|195426399|ref|XP_002061322.1| GK20787 [Drosophila willistoni]
 gi|194157407|gb|EDW72308.1| GK20787 [Drosophila willistoni]
          Length = 467

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 79  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 138

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 139 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 177


>gi|313237505|emb|CBY19946.1| unnamed protein product [Oikopleura dioica]
          Length = 236

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 76/99 (76%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI+MAIN+ + +R TL+ IY +I+ KFPY+   K+GWQNSIRHNLSLN+CF+
Sbjct: 3   KPPYSYIALISMAINSKKDRRITLSGIYKFISDKFPYYRDTKQGWQNSIRHNLSLNECFI 62

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           K A+      KG++WTL     +MFENG+Y RRRRR K+
Sbjct: 63  KEARIDKKRGKGSFWTLDPDAFNMFENGSYLRRRRRFKK 101


>gi|405963400|gb|EKC28977.1| Forkhead box protein D3-B [Crassostrea gigas]
          Length = 430

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 78/110 (70%), Gaps = 1/110 (0%)

Query: 277 SSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSI 336
           S  +S+ ++  KPPYSY+ALI MAI  +  KR TL+ I  +I  +FPY+ +    WQNSI
Sbjct: 109 SEKNSSKSNLVKPPYSYIALITMAILQSSQKRLTLSGICEFIINRFPYYREKFPAWQNSI 168

Query: 337 RHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           RHNLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG++ RRR+R KR
Sbjct: 169 RHNLSLNDCFVKIPREPGNPGKGNYWTLDPRSEDMFDNGSFLRRRKRYKR 218


>gi|19527655|gb|AAL89942.1| SD02951p [Drosophila melanogaster]
          Length = 456

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 85  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 144

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 145 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 183


>gi|17647421|ref|NP_523814.1| forkhead domain 59A [Drosophila melanogaster]
 gi|13124730|sp|Q02361.2|FD3_DROME RecName: Full=Fork head domain-containing protein FD3
 gi|7291491|gb|AAF46917.1| forkhead domain 59A [Drosophila melanogaster]
 gi|94400450|gb|ABF17889.1| FI01123p [Drosophila melanogaster]
 gi|220952246|gb|ACL88666.1| fd59A-PA [synthetic construct]
 gi|220960482|gb|ACL92777.1| fd59A-PA [synthetic construct]
          Length = 456

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 85  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 144

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 145 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 183


>gi|440892146|gb|ELR45473.1| Forkhead box protein I2, partial [Bos grunniens mutus]
          Length = 237

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 74/97 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 22  RPPYSYSALIAMAIQSAPRRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 81

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 82  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 118


>gi|195384363|ref|XP_002050887.1| GJ22399 [Drosophila virilis]
 gi|194145684|gb|EDW62080.1| GJ22399 [Drosophila virilis]
          Length = 471

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 85  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 144

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 145 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 183


>gi|256052360|ref|XP_002569740.1| forkhead protein/ forkhead protein domain [Schistosoma mansoni]
 gi|360043898|emb|CCD81444.1| putative forkhead protein/ forkhead protein domain [Schistosoma
           mansoni]
          Length = 744

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 78/108 (72%), Gaps = 1/108 (0%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           S  S    S KPPYSY+ALIAMAI++    +ATL  IY YI   +PY+ +NK+GWQNSIR
Sbjct: 308 SEESVQDSSVKPPYSYIALIAMAISSQYDGKATLNGIYRYIMDNYPYYRENKQGWQNSIR 367

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           HNLSLNDCFVKV ++     KG++WTL  +  +MF+NG+Y RR+RR K
Sbjct: 368 HNLSLNDCFVKVPRDDTKPGKGSFWTLHPEAHNMFDNGSYLRRKRRFK 415


>gi|402592846|gb|EJW86773.1| hypothetical protein WUBG_02313 [Wuchereria bancrofti]
          Length = 119

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 80/103 (77%), Gaps = 7/103 (6%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFE----KNKKGWQNSIRHNL 340
           +  KPPYSYVALI MAI+++  ++ TL++IY+YI  +FPY+     K ++GWQNSIRHNL
Sbjct: 15  ECEKPPYSYVALITMAISDSPERQMTLSQIYHYIDARFPYYRNCDPKRRQGWQNSIRHNL 74

Query: 341 SLNDCFVKVAKEGAG---ERKGNYWTLATKHEDMFENGNYRRR 380
           SLNDCF+K A++G G   +RKGN+WTL+    +MF+NGN++RR
Sbjct: 75  SLNDCFIKKARDGVGPANDRKGNFWTLSPDSINMFDNGNFKRR 117


>gi|195346889|ref|XP_002039987.1| GM15965 [Drosophila sechellia]
 gi|194135336|gb|EDW56852.1| GM15965 [Drosophila sechellia]
          Length = 456

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 85  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 144

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 145 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 183


>gi|82706198|gb|ABB89483.1| forkhead transcription factor L2 [Strongylocentrotus purpuratus]
          Length = 372

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 77/93 (82%), Gaps = 1/93 (1%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPP+SYVALIAMAI ++  ++ TL++IY YI  KF Y+EKNKKGWQNSIRHNLSLN+C
Sbjct: 166 SQKPPFSYVALIAMAIKDSPERKLTLSQIYQYIINKFSYYEKNKKGWQNSIRHNLSLNEC 225

Query: 346 FVKVAK-EGAGERKGNYWTLATKHEDMFENGNY 377
           F+K+A+  G GE+KGNYWTL   ++DMFE GNY
Sbjct: 226 FLKIAREGGGGEKKGNYWTLDPAYDDMFEKGNY 258


>gi|195585847|ref|XP_002082690.1| GD11717 [Drosophila simulans]
 gi|194194699|gb|EDX08275.1| GD11717 [Drosophila simulans]
          Length = 456

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 85  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 144

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 145 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 183


>gi|125811493|ref|XP_001361889.1| GA17601 [Drosophila pseudoobscura pseudoobscura]
 gi|54637065|gb|EAL26468.1| GA17601 [Drosophila pseudoobscura pseudoobscura]
          Length = 457

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 73  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 132

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 133 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 171


>gi|327279456|ref|XP_003224472.1| PREDICTED: forkhead box protein E4-like [Anolis carolinensis]
          Length = 386

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 66/90 (73%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N   +R TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 79  GKPPYSYIALIAMAIANAPERRLTLGGIYKFITERFPFYRENPKKWQNSIRHNLTLNDCF 138

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           VK+ +E     KGNYWTL    EDMF+NG+
Sbjct: 139 VKIPREPGHPGKGNYWTLDPAAEDMFDNGS 168


>gi|208431808|ref|NP_001129118.1| forkhead box protein I3 [Canis lupus familiaris]
 gi|238066641|sp|B5RHS5.1|FOXI3_CANFA RecName: Full=Forkhead box protein I3
 gi|205271042|emb|CAQ53186.1| forkhead box I3 [Canis lupus familiaris]
          Length = 436

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 158 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 217

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 218 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 254


>gi|242021691|ref|XP_002431277.1| Forkhead box protein D3, putative [Pediculus humanus corporis]
 gi|212516534|gb|EEB18539.1| Forkhead box protein D3, putative [Pediculus humanus corporis]
          Length = 410

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 85/133 (63%), Gaps = 13/133 (9%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I  +FPY+ +    WQNSIRHNLSLNDCF+
Sbjct: 147 KPPYSYIALITMAILQSPRKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFI 206

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNAKP--------YL 398
           K+ +E     KGNYWTL    EDMF+NG++ RRR+R KR  + P +  +         +L
Sbjct: 207 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKR--QPPDFVLREHHAAAMSQFL 264

Query: 399 G--DMYAHQNLIG 409
           G  D Y H +L+G
Sbjct: 265 GSSDPYHHASLLG 277


>gi|194757100|ref|XP_001960803.1| GF13549 [Drosophila ananassae]
 gi|190622101|gb|EDV37625.1| GF13549 [Drosophila ananassae]
          Length = 456

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 78  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 137

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 138 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 176


>gi|195170280|ref|XP_002025941.1| GL10130 [Drosophila persimilis]
 gi|194110805|gb|EDW32848.1| GL10130 [Drosophila persimilis]
          Length = 457

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 73  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 132

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 133 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 171


>gi|402891533|ref|XP_003909000.1| PREDICTED: forkhead box protein I3 [Papio anubis]
          Length = 549

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 274 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 333

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 334 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 370


>gi|47228378|emb|CAG05198.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 290

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 7/159 (4%)

Query: 218 ILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPIS 277
           IL E +++       ++NQT  R+   +V+Q         SSPP  +SS+++     P S
Sbjct: 12  ILSEETDIDVVGEGEEDNQT--RSYVDEVAQMRDGILLDGSSPPCLDSSTSTRDTFKPAS 69

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
             +       KPPYSY+ALI MAI  +  KR TL+EI ++I+ +FPY+ +    WQNSIR
Sbjct: 70  KNTLV-----KPPYSYIALITMAILQSPKKRLTLSEICDFISNRFPYYREKFPAWQNSIR 124

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 125 HNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGS 163


>gi|327267662|ref|XP_003218618.1| PREDICTED: forkhead box protein I2-like [Anolis carolinensis]
          Length = 267

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMA+ +   K+ TL++IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 16  RPPYSYSALIAMALQSAPGKKLTLSQIYQFVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 75

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV +      KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 76  KVPRHEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKKR 112


>gi|358333885|dbj|GAA52346.1| forkhead box protein C2-B [Clonorchis sinensis]
          Length = 837

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALI MAI      +ATL+ IY YI  K+PY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 277 KPPFSYIALITMAIEAQPDGKATLSSIYRYIMDKYPYYRENKQGWQNSIRHNLSLNDCFV 336

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA++     KG++W L      MF+NG++ RR+RR K
Sbjct: 337 KVARDDKKPGKGSFWKLHPDARGMFDNGSFLRRKRRFK 374


>gi|195488924|ref|XP_002092519.1| GE14241 [Drosophila yakuba]
 gi|194178620|gb|EDW92231.1| GE14241 [Drosophila yakuba]
          Length = 454

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 85  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 144

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 145 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 183


>gi|194884645|ref|XP_001976310.1| GG22808 [Drosophila erecta]
 gi|190659497|gb|EDV56710.1| GG22808 [Drosophila erecta]
          Length = 454

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 85  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 144

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 145 KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 183


>gi|332846627|ref|XP_523450.3| PREDICTED: forkhead box protein C2 [Pan troglodytes]
          Length = 405

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 72/98 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           CFVKV ++     KG+YWTL     +MFENG++ RRRR
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRR 166


>gi|443719885|gb|ELU09837.1| hypothetical protein CAPTEDRAFT_154409 [Capitella teleta]
          Length = 253

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 74/98 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI  +  +R TLA IY +++ +FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 142 RPPYSYSALIAMAIQQSPTRRLTLAAIYRFVSEQFPFYKRSKTGWQNSIRHNLSLNDCFK 201

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR 385
           KV +      KG+YWT+    E MF+NGN+RR+R+ K+
Sbjct: 202 KVPRADNDPGKGSYWTIDPNCEKMFDNGNFRRKRKTKK 239


>gi|115631569|ref|XP_001200755.1| PREDICTED: uncharacterized protein LOC751846 [Strongylocentrotus
           purpuratus]
          Length = 411

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 77/93 (82%), Gaps = 1/93 (1%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPP+SYVALIAMAI ++  ++ TL++IY YI  KF Y+EKNKKGWQNSIRHNLSLN+C
Sbjct: 173 SQKPPFSYVALIAMAIKDSPERKLTLSQIYQYIINKFSYYEKNKKGWQNSIRHNLSLNEC 232

Query: 346 FVKVAK-EGAGERKGNYWTLATKHEDMFENGNY 377
           F+K+A+  G GE+KGNYWTL   ++DMFE GNY
Sbjct: 233 FLKIAREGGGGEKKGNYWTLDPAYDDMFEKGNY 265


>gi|395830001|ref|XP_003788125.1| PREDICTED: forkhead box protein S1 [Otolemur garnettii]
          Length = 330

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 73/103 (70%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P +   +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPQAPAAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|426391282|ref|XP_004062006.1| PREDICTED: forkhead box protein S1 [Gorilla gorilla gorilla]
          Length = 328

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P + TT+  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRH
Sbjct: 7   PGAPTTEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRH 66

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           NLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 67  NLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 105


>gi|313232675|emb|CBY19345.1| unnamed protein product [Oikopleura dioica]
          Length = 360

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 71/104 (68%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           PS  +    KPPYSY+AL AMAI +   K  TLAEIY +I  +FPY+ KN + WQNS+RH
Sbjct: 4   PSRDSYGDQKPPYSYIALTAMAIQSAPDKMMTLAEIYKFIMDRFPYYRKNTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG+YW+L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRADKPGKGSYWSLHPSCGDMFENGSFLRRRK 107


>gi|240977041|ref|XP_002402584.1| fork head domain protein, putative [Ixodes scapularis]
 gi|215491210|gb|EEC00851.1| fork head domain protein, putative [Ixodes scapularis]
          Length = 327

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 78/122 (63%), Gaps = 2/122 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+ I  +I  +FP++      WQNSIRHNLSLNDCFV
Sbjct: 109 KPPYSYIALITMAILQSPEKRLTLSGICEFIRNRFPFYRDKYPMWQNSIRHNLSLNDCFV 168

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNAKPYLGDMYAHQN 406
           K+ +E     KGNYWTL    EDMF+NG++ RRR+R KR    P  +   + GD+  H  
Sbjct: 169 KIPREPGNPGKGNYWTLDPASEDMFDNGSFLRRRKRYKRTPPDPVADGF-FFGDLLRHHP 227

Query: 407 LI 408
           L 
Sbjct: 228 LF 229


>gi|402882851|ref|XP_003904946.1| PREDICTED: forkhead box protein S1 [Papio anubis]
          Length = 330

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 73/103 (70%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P +   +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPGAPAAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|300069052|ref|NP_001177788.1| forkhead box protein S1 [Macaca mulatta]
 gi|355563240|gb|EHH19802.1| Forkhead-related transcription factor 10 [Macaca mulatta]
 gi|387540882|gb|AFJ71068.1| forkhead box protein S1 [Macaca mulatta]
          Length = 330

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 73/103 (70%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P +   +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPGAPAAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|397468476|ref|XP_003805906.1| PREDICTED: forkhead box protein I3 [Pan paniscus]
          Length = 589

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 314 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 373

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 374 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 410


>gi|345789891|ref|XP_003433290.1| PREDICTED: forkhead box protein S1 [Canis lupus familiaris]
          Length = 330

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 73/103 (70%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P +   +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPLAPAAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|301765836|ref|XP_002918325.1| PREDICTED: forkhead box protein S1-like [Ailuropoda melanoleuca]
 gi|281339320|gb|EFB14904.1| hypothetical protein PANDA_006777 [Ailuropoda melanoleuca]
          Length = 330

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 73/103 (70%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P +   +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPLAPVAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|268532048|ref|XP_002631152.1| C. briggsae CBR-UNC-130 protein [Caenorhabditis briggsae]
          Length = 332

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALI+M+I N+  K+ TL+EI +YI  +F Y+++    WQNSIRHNLSLNDCFV
Sbjct: 132 KPPFSYIALISMSIINSPEKKLTLSEICDYIMNRFEYYKEKFPAWQNSIRHNLSLNDCFV 191

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +      KGNYWTL    EDMF+NG++ RRR+R K+
Sbjct: 192 KVPRGPGNPGKGNYWTLDPNSEDMFDNGSFLRRRKRFKK 230


>gi|326925348|ref|XP_003208878.1| PREDICTED: forkhead box protein E4-like, partial [Meleagris
           gallopavo]
          Length = 309

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCFV
Sbjct: 1   KPPYSYIALIAMAIANAAERKLTLGGIYKFITERFPFYRENPKKWQNSIRHNLTLNDCFV 60

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL    EDMF+NG+
Sbjct: 61  KIPREPGHPGKGNYWTLDPAAEDMFDNGS 89


>gi|238054017|ref|NP_001153929.1| forkhead box E3 [Oryzias latipes]
 gi|226441723|gb|ACO57464.1| forkhead box E3 [Oryzias latipes]
          Length = 399

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 67/90 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 79  GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCF 138

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           VK+ +E     KGNYWTL    EDMF+NG+
Sbjct: 139 VKIPREPGRPGKGNYWTLDPAAEDMFDNGS 168


>gi|348504644|ref|XP_003439871.1| PREDICTED: forkhead box protein E4-like [Oreochromis niloticus]
          Length = 416

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 94  GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCF 153

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 154 VKIPREPGRPGKGNYWTLDPAAEDMFDNG 182


>gi|301069360|ref|NP_001073150.2| forkhead box protein E3 [Danio rerio]
 gi|190337414|gb|AAI63364.1| Forkhead box E3 [Danio rerio]
 gi|190338364|gb|AAI63348.1| Forkhead box E3 [Danio rerio]
          Length = 422

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 102 GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCF 161

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 162 VKIPREPGRPGKGNYWTLDPAAEDMFDNG 190


>gi|410954054|ref|XP_003983682.1| PREDICTED: forkhead box protein S1 [Felis catus]
          Length = 330

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 73/103 (70%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P +   +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPLAPAAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|410903750|ref|XP_003965356.1| PREDICTED: forkhead box protein D1-like [Takifugu rubripes]
          Length = 342

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 7/159 (4%)

Query: 218 ILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPIS 277
           IL E +++       ++NQT  R+   +V+Q         SSPP  +SS+++     P  
Sbjct: 12  ILSEETDIDVVGEGEEDNQT--RSYVDEVAQMRDGILLDGSSPPCLDSSTSTRDTFKPAG 69

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
             +       KPPYSY+ALI MAI  +  KR TL+EI ++I+ +FPY+ +    WQNSIR
Sbjct: 70  KNTLV-----KPPYSYIALITMAILQSPKKRLTLSEICDFISNRFPYYREKFPAWQNSIR 124

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 125 HNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGS 163


>gi|75677594|ref|NP_997188.2| forkhead box protein D4 [Homo sapiens]
 gi|311033480|sp|Q12950.4|FOXD4_HUMAN RecName: Full=Forkhead box protein D4; AltName:
           Full=Forkhead-related protein FKHL9; AltName:
           Full=Forkhead-related transcription factor 5;
           Short=FREAC-5; AltName: Full=Myeloid factor-alpha
 gi|58476090|gb|AAH89432.1| Forkhead box D4 [Homo sapiens]
 gi|187953277|gb|AAI36571.1| Forkhead box D4 [Homo sapiens]
 gi|223460382|gb|AAI36572.1| Forkhead box D4 [Homo sapiens]
          Length = 439

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP SY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 104 KPPSSYIALITMAILQSPHKRLTLSGICAFISDRFPYYRRKFPAWQNSIRHNLSLNDCFV 163

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           K+ +E     KGNYW+L    +DMF+NG++ RRR+R +R   TP 
Sbjct: 164 KIPREPGRPGKGNYWSLDPASQDMFDNGSFLRRRKRFQRHQPTPG 208


>gi|425906023|gb|AFY10808.1| FoxC, partial [Isodiametra pulchra]
          Length = 293

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 75/103 (72%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P + P     D  KPPYSY+ALIA++I   + K+ATL+ IY +I  +FPY+  NK+GWQN
Sbjct: 77  PGALPHENPKDMVKPPYSYIALIAVSIMATKDKKATLSSIYQFIMDRFPYYRHNKQGWQN 136

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLNDCF+KVA++     KG+YWTL  +  +MF+NG+Y
Sbjct: 137 SIRHNLSLNDCFIKVARDDKKPGKGSYWTLDPESYNMFDNGSY 179


>gi|17536629|ref|NP_496411.1| Protein UNC-130 [Caenorhabditis elegans]
 gi|3875031|emb|CAA88935.1| Protein UNC-130 [Caenorhabditis elegans]
          Length = 333

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAM+I N+  K+ TL+EI  +I  KF Y+++    WQNSIRHNLSLNDCFV
Sbjct: 127 KPPYSYIALIAMSILNSPEKKLTLSEICEFIINKFEYYKEKFPAWQNSIRHNLSLNDCFV 186

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KGNYW L    EDMF+NG++ RRR+
Sbjct: 187 KVARGPGNPGKGNYWALDPNCEDMFDNGSFLRRRK 221


>gi|291229466|ref|XP_002734694.1| PREDICTED: fork-head box I transcription factor [Saccoglossus
           kowalevskii]
          Length = 298

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 75/107 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   K+ TL+ IY Y++  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 99  RPPYSYSALIAMAIQSAGEKKITLSGIYKYVSDNFPFYKKSKAGWQNSIRHNLSLNDCFK 158

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNA 394
           KV +      KGNYW L    E MF+NGN+RR+R+ +    T + N+
Sbjct: 159 KVPRSEDDPGKGNYWMLDPNCEKMFDNGNFRRKRKRRGDSSTTAANS 205


>gi|18478831|gb|AAL73341.1| FOXD4a [Homo sapiens]
          Length = 439

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP SY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNS+RHNLSLNDCFV
Sbjct: 104 KPPSSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSVRHNLSLNDCFV 163

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           K+ +E     KGNYW+L    +DMF+NG++ RRR+R +R   TP 
Sbjct: 164 KIPREPGRPGKGNYWSLDPASQDMFDNGSFLRRRKRFQRHQPTPG 208


>gi|363736626|ref|XP_001235208.2| PREDICTED: forkhead box protein E4 [Gallus gallus]
          Length = 394

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 66/90 (73%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N   ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 85  GKPPYSYIALIAMAIANAAERKLTLGGIYKFITERFPFYRENPKKWQNSIRHNLTLNDCF 144

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           VK+ +E     KGNYWTL    EDMF+NG+
Sbjct: 145 VKIPREPGHPGKGNYWTLDPAAEDMFDNGS 174


>gi|332249015|ref|XP_003273659.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein S1 [Nomascus
           leucogenys]
          Length = 282

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 72/100 (72%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P + TT+  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPGAPTTEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFEN 374
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEH 104


>gi|301603609|ref|XP_002931457.1| PREDICTED: forkhead box protein E4-like [Xenopus (Silurana)
           tropicalis]
          Length = 398

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 81  GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCF 140

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 141 VKIPREPGHPGKGNYWTLDPAAEDMFDNG 169


>gi|34596581|gb|AAQ76878.1| FOXD4 [Homo sapiens]
          Length = 494

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP SY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 104 KPPSSYIALITMAILQSPHKRLTLSGICAFISGRFPYYCRKFPAWQNSIRHNLSLNDCFV 163

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           K+ +E     KGNYW+L    +DMF+NG++ RRR+R +R   TP 
Sbjct: 164 KIPREPGRPGKGNYWSLDPASQDMFDNGSFLRRRKRFQRHQPTPG 208


>gi|208968405|dbj|BAG74041.1| forkhead box D4-like 1 [synthetic construct]
          Length = 439

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP SY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 104 KPPSSYIALITMAILQSPHKRLTLSGICAFISGRFPYYCRKFPAWQNSIRHNLSLNDCFV 163

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           K+ +E     KGNYW+L    +DMF+NG++ RRR+R +R   TP 
Sbjct: 164 KIPREPGRPGKGNYWSLDPASQDMFDNGSFLRRRKRFQRHQPTPG 208


>gi|196012756|ref|XP_002116240.1| hypothetical protein TRIADDRAFT_30534 [Trichoplax adhaerens]
 gi|190581195|gb|EDV21273.1| hypothetical protein TRIADDRAFT_30534 [Trichoplax adhaerens]
          Length = 122

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 77/105 (73%), Gaps = 2/105 (1%)

Query: 273 SSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGW 332
            + I++PS+T  ++ KP YSY+ALIAMAI +   ++ TL  IY +I   FPY+ +NK+GW
Sbjct: 7   GTAIAAPSTTKDNAVKPAYSYIALIAMAIKSKHDRKITLNGIYQFIMDHFPYYRQNKQGW 66

Query: 333 QNSIRHNLSLNDCFVKVAKEGAGER--KGNYWTLATKHEDMFENG 375
           QNSIRHNLSLN+CFVKV +E   +R  KGNYWTL    E+MFENG
Sbjct: 67  QNSIRHNLSLNECFVKVPREEGEKRPKKGNYWTLHPDSENMFENG 111


>gi|390351057|ref|XP_003727565.1| PREDICTED: forkhead box protein A4 [Strongylocentrotus purpuratus]
          Length = 353

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 94/162 (58%), Gaps = 3/162 (1%)

Query: 263 DESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKF 322
           D+SS+T   V SP+           KPPYSY+ALI MA+  ++    TL E+Y +I  KF
Sbjct: 94  DDSSTTCANVGSPVVKRRFADV---KPPYSYIALITMALEGSKDGMMTLNEVYQFIMDKF 150

Query: 323 PYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           PYF +N++ WQNSIRHNLSLNDCF+KV +      KGNYW L     DMF NG++ RR +
Sbjct: 151 PYFRENQQRWQNSIRHNLSLNDCFIKVPRAPGRPGKGNYWALHPSCGDMFSNGSFLRRAK 210

Query: 383 MKRPVRTPSYNAKPYLGDMYAHQNLIGRDIFSATASPFSSRN 424
             +  ++ +  A+    + Y H NL    + S   S ++ R+
Sbjct: 211 RFKLHKSKNDPAEVRHVNSYGHFNLCSAYLGSPHPSQYARRH 252


>gi|311739|emb|CAA50742.1| fkh-2 [Mus musculus]
          Length = 111

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 75/108 (69%), Gaps = 3/108 (2%)

Query: 282 TTTDS---NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           TT D     KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRH
Sbjct: 1   TTADGPQPAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRH 60

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRP 386
           NLSLNDCFVK+ +E     KGNYW+L    +DMF+NG++ RRR+  +P
Sbjct: 61  NLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGSFLRRRKRFKP 108


>gi|390348308|ref|XP_787062.2| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC581992
           [Strongylocentrotus purpuratus]
          Length = 341

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI ++   + TL+ IY Y+A  FP+++++K GWQNSIRHNLSLNDCF+
Sbjct: 121 RPPYSYSALIAMAIQSSPDHKITLSGIYRYVAENFPFYKRSKAGWQNSIRHNLSLNDCFI 180

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV +      KG+YWTL    E MF+NGN+RR+R+ +
Sbjct: 181 KVPRADNDPGKGHYWTLDPNCEKMFDNGNFRRKRKRR 217


>gi|358031584|ref|NP_001239603.1| transcription factor crocodile [Bombyx mori]
 gi|356640024|dbj|BAL14565.1| transcription factor crocodile [Bombyx mori]
          Length = 335

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 70/93 (75%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   +R TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 54  DMVKPPYSYIALIAMAIQNAPERRITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 113

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKVA++     KG+YWTL     +MF+NG+Y
Sbjct: 114 CFVKVARDDKKPGKGSYWTLDPDSYNMFDNGSY 146


>gi|332021637|gb|EGI61996.1| Fork head domain-containing protein FD2 [Acromyrmex echinatior]
          Length = 232

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 72/98 (73%), Gaps = 8/98 (8%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAIN++  +R TLA IY +I  +FPY+ +N++GWQNSIRHNLSLNDCFV
Sbjct: 50  KPPYSYIALIAMAINSSPKRRLTLAGIYKFIMDRFPYYRENRQGWQNSIRHNLSLNDCFV 109

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           KV +        EG    KG+YWTL     +MFE+GNY
Sbjct: 110 KVPRDRTSTDDGEGHTAGKGSYWTLDPSASEMFEHGNY 147


>gi|410921436|ref|XP_003974189.1| PREDICTED: forkhead box protein E4-like [Takifugu rubripes]
          Length = 417

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 96  GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCF 155

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 156 VKIPREPGRPGKGNYWTLDPAAEDMFDNG 184


>gi|133777149|gb|AAI03887.2| FOXD4 protein [Homo sapiens]
          Length = 395

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP SY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 103 KPPSSYIALITMAILQSPHKRLTLSGICAFISDRFPYYRRKFPAWQNSIRHNLSLNDCFV 162

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           K+ +E     KGNYW+L    +DMF+NG++ RRR+R +R   TP 
Sbjct: 163 KIPREPGRPGKGNYWSLDPASQDMFDNGSFLRRRKRFQRHQPTPG 207


>gi|335280499|ref|XP_003353582.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D4-like [Sus
           scrofa]
          Length = 424

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 77/112 (68%)

Query: 265 SSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPY 324
           S+S+  + S+  ++ S+  T   KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY
Sbjct: 84  SNSSEFRTSTGSAAASADGTQPTKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPY 143

Query: 325 FEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           + +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 144 YRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 195


>gi|327290527|ref|XP_003229974.1| PREDICTED: hypothetical protein LOC100555310 [Anolis carolinensis]
          Length = 479

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 70/106 (66%)

Query: 272 VSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKG 331
            S P   P    TD  KPPYSY+ALI MAI +   KR TL+ IY YI  +F Y+  NK+G
Sbjct: 85  ASEPFLGPRLPGTDGTKPPYSYIALITMAIQSTPEKRITLSGIYRYIMGRFAYYRDNKQG 144

Query: 332 WQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           WQNSIRHNLSLN+CFVK+ ++     KG++W L     DMFENG++
Sbjct: 145 WQNSIRHNLSLNECFVKMPRDDKKPGKGSFWALDPDCYDMFENGSF 190


>gi|82706202|gb|ABB89485.1| forkhead transcription factor I [Strongylocentrotus purpuratus]
          Length = 316

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI ++   + TL+ IY Y+A  FP+++++K GWQNSIRHNLSLNDCF+
Sbjct: 96  RPPYSYSALIAMAIQSSPDHKITLSGIYRYVAENFPFYKRSKAGWQNSIRHNLSLNDCFI 155

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           KV +      KG+YWTL    E MF+NGN+RR+R+ +
Sbjct: 156 KVPRADNDPGKGHYWTLDPNCEKMFDNGNFRRKRKRR 192


>gi|215539465|gb|AAI69818.1| Lens1-A protein [Xenopus laevis]
          Length = 365

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 47  GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCF 106

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 107 VKIPREPGHPGKGNYWTLDPAAEDMFDNG 135


>gi|327292130|ref|XP_003230773.1| PREDICTED: hypothetical protein LOC100553614 [Anolis carolinensis]
          Length = 354

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 70/102 (68%)

Query: 276 ISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           +  P S      KPPYSY+ALIAMAI  +  ++ TL  IY +I  +FP++ +NK+GWQNS
Sbjct: 25  LGFPLSRPDPPQKPPYSYIALIAMAIQASPGRKVTLNGIYQFILERFPFYRENKQGWQNS 84

Query: 336 IRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           IRHNLSLN CFVKV +E     KG+YWTL  +  DMFE GNY
Sbjct: 85  IRHNLSLNACFVKVPREKGRPGKGSYWTLDPRCTDMFERGNY 126


>gi|426241953|ref|XP_004014844.1| PREDICTED: forkhead box protein S1 [Ovis aries]
          Length = 379

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 70/98 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           S    +  KPPYSY+ALIAMAI N+  +RATL+ IY YI  +F ++  N+ GWQNSIRHN
Sbjct: 59  SCLAAEPTKPPYSYIALIAMAIQNSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHN 118

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           LSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 119 LSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 156


>gi|157429|gb|AAA28534.1| fork head domain DNA binding protein [Drosophila melanogaster]
          Length = 128

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 16  KPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFI 75

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           KV +E     KGN+WTL    EDMF+NG++ RRR+R KR
Sbjct: 76  KVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKR 114


>gi|147899702|ref|NP_001079202.1| forkhead box protein E4 [Xenopus laevis]
 gi|82248126|sp|Q9PTK2.1|FOXE4_XENLA RecName: Full=Forkhead box protein E4; Short=FoxE4; AltName:
           Full=Xlens1
 gi|6642989|gb|AAF20385.1|AF186464_1 forkhead protein lens1 [Xenopus laevis]
          Length = 365

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 47  GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCF 106

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 107 VKIPREPGHPGKGNYWTLDPAAEDMFDNG 135


>gi|213623492|gb|AAI69820.1| Forkhead protein lens1 [Xenopus laevis]
          Length = 365

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 47  GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCF 106

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 107 VKIPREPGHPGKGNYWTLDPAAEDMFDNG 135


>gi|357608608|gb|EHJ66069.1| putative forkhead protein/ forkhead protein domain protein [Danaus
           plexippus]
          Length = 281

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 69/90 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   +R TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+CFV
Sbjct: 3   KPPYSYIALIAMAIQNAPDRRITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 62

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG+Y
Sbjct: 63  KVARDDKKPGKGSYWTLDPDSYNMFDNGSY 92


>gi|344279826|ref|XP_003411687.1| PREDICTED: forkhead box protein S1-like [Loxodonta africana]
          Length = 330

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 72/103 (69%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P+  P     +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQN
Sbjct: 5   PLPGPLGPAAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMNRFAFYRHNRPGWQN 64

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SIRHNLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 65  SIRHNLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|335371113|gb|AEH57085.1| FoxB [Bugula neritina]
          Length = 292

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P  ++  + KPPYSY+AL AMAI ++E K   L+ IY +I   FPY+ +N + WQNS+RH
Sbjct: 4   PGRSSYVTGKPPYSYIALTAMAIQSSEEKMLPLSGIYKWIMENFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ ++  G+ KG YW L T    MFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIQRKSTGKGKGCYWALHTNCSTMFENGSFLRRRKRFK 110


>gi|321477591|gb|EFX88549.1| hypothetical protein DAPPUDRAFT_28765 [Daphnia pulex]
          Length = 101

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI +N HK+ TL+ I  +I  +FPY+      WQNSIRHNLSLNDCFV
Sbjct: 3   KPPYSYIALITMAILSNPHKKLTLSGICEFIMNRFPYYRDRFPAWQNSIRHNLSLNDCFV 62

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           K+ +E     KGNYWTL    EDMF+NG++ RRR+R KR
Sbjct: 63  KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKR 101


>gi|115533184|ref|NP_001041114.1| Protein PHA-4, isoform a [Caenorhabditis elegans]
 gi|74962132|sp|Q17381.1|PHA4_CAEEL RecName: Full=Defective pharyngeal development protein 4; AltName:
           Full=Ce-fkh-1; AltName: Full=Fork head-HNF-3 homolog
 gi|1256430|gb|AAA96319.1| fork head/HNF-3-like protein [Caenorhabditis elegans]
 gi|3876881|emb|CAB07378.1| Protein PHA-4, isoform a [Caenorhabditis elegans]
          Length = 506

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 75/105 (71%), Gaps = 1/105 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  ++ TL+EIYN+I   FPY++ N++ WQNSIRH+LS NDCFV
Sbjct: 236 KPPYSYISLITMAIQKSNSRQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHSLSFNDCFV 295

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           KVA+      KG++WTL     +MFENG Y RR++R K   R PS
Sbjct: 296 KVARSPDKPGKGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPS 340


>gi|6679841|ref|NP_032048.1| forkhead box protein D4 [Mus musculus]
 gi|2494492|sp|Q60688.1|FOXD4_MOUSE RecName: Full=Forkhead box protein D4; AltName:
           Full=Forkhead-related protein FKHL9; AltName:
           Full=Forkhead-related transcription factor 5;
           Short=FREAC-5; AltName: Full=Transcription factor FKH-2
 gi|1213006|emb|CAA60128.1| transcription factor [Mus musculus]
 gi|187951949|gb|AAI38433.1| Forkhead box D4 [Mus musculus]
 gi|187951951|gb|AAI38435.1| Forkhead box D4 [Mus musculus]
          Length = 444

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 72/102 (70%), Gaps = 3/102 (2%)

Query: 278 SPSSTTTDS---NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           +P++TT D     KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQN
Sbjct: 90  TPATTTADGPQPAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQN 149

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           SIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 150 SIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 191


>gi|68226724|ref|NP_944598.2| forkhead box protein I3 [Danio rerio]
 gi|68085155|gb|AAH66726.2| Forkhead box I2 [Danio rerio]
          Length = 383

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 129 RPPYSYSALIAMAIQNAHEKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 188

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 189 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 218


>gi|189235432|ref|XP_001812698.1| PREDICTED: similar to forkhead protein/ forkhead protein domain
           [Tribolium castaneum]
 gi|270003561|gb|EFA00009.1| hypothetical protein TcasGA2_TC002813 [Tribolium castaneum]
          Length = 342

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 71/97 (73%)

Query: 281 STTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNL 340
           ST  D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNL
Sbjct: 54  STAKDMVKPPYSYIALIAMAIQNAPDKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNL 113

Query: 341 SLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SLN+CFVKV ++     KG+YWTL     +MF+NG+Y
Sbjct: 114 SLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFDNGSY 150


>gi|33087227|gb|AAP92808.1| forkhead transcription factor i2 [Danio rerio]
          Length = 383

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 129 RPPYSYSALIAMAIQNAHEKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 188

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 189 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 218


>gi|148709676|gb|EDL41622.1| forkhead box D4 [Mus musculus]
          Length = 444

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 72/102 (70%), Gaps = 3/102 (2%)

Query: 278 SPSSTTTDS---NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           +P++TT D     KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQN
Sbjct: 90  TPATTTADGPQPAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQN 149

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           SIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 150 SIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 191


>gi|170031286|ref|XP_001843517.1| fork head [Culex quinquefasciatus]
 gi|167869544|gb|EDS32927.1| fork head [Culex quinquefasciatus]
          Length = 438

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 69/95 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN HK  TLAEIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 150 KPPYSYISLITMAIQNNPHKMLTLAEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 209

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG++WTL     +MFENG Y RR++
Sbjct: 210 KVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 244


>gi|240984348|ref|XP_002403995.1| forkhead domain-containing protein, putative [Ixodes scapularis]
 gi|215491471|gb|EEC01112.1| forkhead domain-containing protein, putative [Ixodes scapularis]
          Length = 363

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 66/90 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI +   ++ TL  IY +I   FP++  NK+GWQNSIRHNLSLNDCFV
Sbjct: 75  KPPYSYIALIAMAIRSAPDQKITLNGIYKFIMDHFPFYHHNKQGWQNSIRHNLSLNDCFV 134

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +E     KG+YWTL    E MFENGN+
Sbjct: 135 KLPREKGKPVKGHYWTLGADCEAMFENGNF 164


>gi|270010909|gb|EFA07357.1| hypothetical protein TcasGA2_TC015957 [Tribolium castaneum]
          Length = 271

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 71/100 (71%), Gaps = 1/100 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I  +F Y+ +    WQNSIRHNLSLNDCF+
Sbjct: 38  KPPYSYIALITMAILQSPQKKLTLSGICEFIMTRFQYYREKFPAWQNSIRHNLSLNDCFI 97

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRP 386
           K+ +E     KGNYWTL    EDMF+NG++ RRR+R KRP
Sbjct: 98  KIPREPGNPGKGNYWTLDPLAEDMFDNGSFLRRRKRYKRP 137


>gi|115533186|ref|NP_001041115.1| Protein PHA-4, isoform b [Caenorhabditis elegans]
 gi|94960406|emb|CAK12559.1| Protein PHA-4, isoform b [Caenorhabditis elegans]
          Length = 442

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           T   +KPPYSY++LI MAI  +  ++ TL+EIYN+I   FPY++ N++ WQNSIRH+LS 
Sbjct: 167 TYGQSKPPYSYISLITMAIQKSNSRQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHSLSF 226

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           NDCFVKVA+      KG++WTL     +MFENG Y RR++R K   R PS
Sbjct: 227 NDCFVKVARSPDKPGKGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPS 276


>gi|313233953|emb|CBY10121.1| unnamed protein product [Oikopleura dioica]
          Length = 468

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAM+I N   KR TLA+IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 186 RPPYSYSALIAMSIQNAPDKRLTLAQIYQYVADNFPFYKRSKAGWQNSIRHNLSLNDCFR 245

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYW L    E MF+NGN+
Sbjct: 246 KVPRDENDPGKGNYWQLDNNCEKMFDNGNF 275


>gi|313246529|emb|CBY35428.1| unnamed protein product [Oikopleura dioica]
          Length = 486

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAM+I N   KR TLA+IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 204 RPPYSYSALIAMSIQNAPDKRLTLAQIYQYVADNFPFYKRSKAGWQNSIRHNLSLNDCFR 263

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYW L    E MF+NGN+
Sbjct: 264 KVPRDENDPGKGNYWQLDNNCEKMFDNGNF 293


>gi|156363335|ref|XP_001626000.1| predicted protein [Nematostella vectensis]
 gi|156212860|gb|EDO33900.1| predicted protein [Nematostella vectensis]
          Length = 456

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 70/96 (72%)

Query: 282 TTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLS 341
           T  D  KPPYSY+ALIAMAI +   KR TL+ IY++I  +FPY+  NK+GWQNSIRHNLS
Sbjct: 73  TRQDMVKPPYSYIALIAMAIQSAPEKRITLSGIYSFIMDRFPYYRNNKQGWQNSIRHNLS 132

Query: 342 LNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           LN+CFVKV ++     KG++W L     +MFENG+Y
Sbjct: 133 LNECFVKVPRDDKKPGKGSFWMLDPDSLNMFENGSY 168


>gi|449492502|ref|XP_002197626.2| PREDICTED: uncharacterized protein LOC100230552 [Taeniopygia
           guttata]
          Length = 493

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 67  TPPPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRDNKQGWQNSIR 126

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KGNYWTL     +MFENG++
Sbjct: 127 HNLSLNECFVKVPRDDKKPGKGNYWTLDPDSYNMFENGSF 166


>gi|157134852|ref|XP_001656474.1| forkhead protein/ forkhead protein domain [Aedes aegypti]
 gi|108881334|gb|EAT45559.1| AAEL003173-PA [Aedes aegypti]
          Length = 435

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 71/95 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI+NN HK  TLAEIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 150 KPPYSYISLIYMAIHNNPHKMLTLAEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 209

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG++WTL  +  +MFENG Y RR++
Sbjct: 210 KVPRTPDKPGKGSFWTLHPESGNMFENGCYLRRQK 244


>gi|170060347|ref|XP_001865763.1| forkhead protein/ forkhead protein domain [Culex quinquefasciatus]
 gi|167878827|gb|EDS42210.1| forkhead protein/ forkhead protein domain [Culex quinquefasciatus]
          Length = 455

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 69/90 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N+  K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 102 KPPYSYIALIAMAIQNSSDKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 162 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 191


>gi|22759703|dbj|BAC10918.1| winged helix/forkhead transcription factor [Dugesia japonica]
          Length = 455

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 73/101 (72%), Gaps = 1/101 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  ++ TL+ I  +I  +FPY++     WQNSIRHNLSLNDCF+
Sbjct: 151 KPPYSYIALITMAILRSPQRKLTLSGICEFIMGRFPYYKDRFPAWQNSIRHNLSLNDCFI 210

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPV 387
           K+ +E     KGNYWTL  + EDMF+NG++ RRR+R KR +
Sbjct: 211 KIPREPGNPGKGNYWTLDPRSEDMFDNGSFLRRRKRYKRQI 251


>gi|308486119|ref|XP_003105257.1| hypothetical protein CRE_21246 [Caenorhabditis remanei]
 gi|308256765|gb|EFP00718.1| hypothetical protein CRE_21246 [Caenorhabditis remanei]
          Length = 499

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           T   +KPPYSY++LI MAI  +  ++ TL+EIYN+I   FPY++ N++ WQNSIRH+LS 
Sbjct: 291 TYGQSKPPYSYISLITMAIQKSATRQLTLSEIYNWIMGLFPYYQNNQQRWQNSIRHSLSF 350

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           NDCFVKVA+      KG++WTL     +MFENG Y RR++R K   R PS
Sbjct: 351 NDCFVKVARSPDKPGKGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPS 400


>gi|115533188|ref|NP_001041116.1| Protein PHA-4, isoform c [Caenorhabditis elegans]
 gi|94960407|emb|CAK12560.1| Protein PHA-4, isoform c [Caenorhabditis elegans]
          Length = 411

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           T   +KPPYSY++LI MAI  +  ++ TL+EIYN+I   FPY++ N++ WQNSIRH+LS 
Sbjct: 136 TYGQSKPPYSYISLITMAIQKSNSRQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHSLSF 195

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           NDCFVKVA+      KG++WTL     +MFENG Y RR++R K   R PS
Sbjct: 196 NDCFVKVARSPDKPGKGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPS 245


>gi|308509110|ref|XP_003116738.1| CRE-UNC-130 protein [Caenorhabditis remanei]
 gi|308241652|gb|EFO85604.1| CRE-UNC-130 protein [Caenorhabditis remanei]
          Length = 335

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAM+I N+  K+ TL+EI  +I  +F Y+++    WQNSIRHNLSLNDCFV
Sbjct: 133 KPPYSYIALIAMSIINSPGKKLTLSEICEFIINRFEYYKEKFPAWQNSIRHNLSLNDCFV 192

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KGNYW L  K EDMF+NG++ RRR+
Sbjct: 193 KVPRGPGNPGKGNYWALDPKCEDMFDNGSFLRRRK 227


>gi|358340324|dbj|GAA48244.1| forkhead box protein A2 hepatocyte nuclear factor 3-beta
           [Clonorchis sinensis]
          Length = 715

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 74/102 (72%), Gaps = 1/102 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N+  +  TL+EIY +I   FPY+ ++++ WQNSIRH+LS NDCFV
Sbjct: 445 KPPYSYISLITMAIQNSPARMCTLSEIYQFIIDLFPYYRQHQQRWQNSIRHSLSFNDCFV 504

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVR 388
           KV++      KG+YWTL  +  +MFENG Y RR++R K P R
Sbjct: 505 KVSRSPDKPGKGSYWTLHPESGNMFENGCYLRRQKRFKDPKR 546


>gi|313246149|emb|CBY35098.1| unnamed protein product [Oikopleura dioica]
          Length = 346

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 66/90 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MA+ N+  K+ TL+EI +YI  KFPY++     WQNSIRHNLSLNDCF+
Sbjct: 21  KPPYSYIALITMAVLNSPTKKLTLSEICDYIIAKFPYYKDRFPAWQNSIRHNLSLNDCFI 80

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV +E     KGNYWT+    E MF+NG++
Sbjct: 81  KVPREPGNPGKGNYWTIDPAAESMFDNGSF 110


>gi|313233911|emb|CBY10079.1| unnamed protein product [Oikopleura dioica]
          Length = 346

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 66/90 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MA+ N+  K+ TL+EI +YI  KFPY++     WQNSIRHNLSLNDCF+
Sbjct: 21  KPPYSYIALITMAVLNSPTKKLTLSEICDYIIAKFPYYKDRFPAWQNSIRHNLSLNDCFI 80

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV +E     KGNYWT+    E MF+NG++
Sbjct: 81  KVPREPGNPGKGNYWTIDPAAESMFDNGSF 110


>gi|195427475|ref|XP_002061802.1| GK16995 [Drosophila willistoni]
 gi|194157887|gb|EDW72788.1| GK16995 [Drosophila willistoni]
          Length = 528

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|118100768|ref|XP_425714.2| PREDICTED: forkhead box protein S1 [Gallus gallus]
          Length = 412

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 1/104 (0%)

Query: 274 SPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQ 333
           SP   PS    ++ KPPYSY+ALI MAI +   KR TL+ IY YI  +F ++  NK+GWQ
Sbjct: 20  SPYPGPSPPA-EATKPPYSYIALITMAIQSTPEKRITLSGIYRYIMGRFTFYRDNKQGWQ 78

Query: 334 NSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           NSIRHNLSLN+CFVKV ++     KGNYWTL     +MFENG++
Sbjct: 79  NSIRHNLSLNECFVKVPRDDKKPGKGNYWTLDPDCHNMFENGSF 122


>gi|348581834|ref|XP_003476682.1| PREDICTED: forkhead box protein S1-like [Cavia porcellus]
          Length = 331

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 71/95 (74%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           TT+  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSL
Sbjct: 14  TTEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSL 73

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           N+CFVKV ++     KG+YWTL     DMF++G++
Sbjct: 74  NECFVKVPRDDRKPGKGSYWTLDPDCHDMFQHGSF 108


>gi|341877124|gb|EGT33059.1| hypothetical protein CAEBREN_28470 [Caenorhabditis brenneri]
          Length = 441

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           T   +KPPYSY++LI MAI  ++ ++ TL+EIY +I   FPY++ N++ WQNSIRH+LS 
Sbjct: 172 TYGQSKPPYSYISLITMAIQKSDRRQLTLSEIYQWIMELFPYYQNNQQRWQNSIRHSLSF 231

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           NDCFVKVA+      KG++WTL     +MFENG Y RR++R K   R PS
Sbjct: 232 NDCFVKVARSPDKPGKGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPS 281


>gi|118343782|ref|NP_001071712.1| transcription factor protein [Ciona intestinalis]
 gi|70569601|dbj|BAE06442.1| transcription factor protein [Ciona intestinalis]
          Length = 466

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 70/90 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N++ K+ TL+ IY Y+A  FP++++++ GWQNSIRHNLSLNDCF 
Sbjct: 143 RPPYSYSALIAMAIQNSKEKKLTLSSIYLYVAENFPFYKRSRAGWQNSIRHNLSLNDCFK 202

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KGNYW+L    E MF+NGN+
Sbjct: 203 KVARDEDDPGKGNYWSLDPNCEKMFDNGNF 232


>gi|347966347|ref|XP_321425.4| AGAP001671-PA [Anopheles gambiae str. PEST]
 gi|333470101|gb|EAA01374.4| AGAP001671-PA [Anopheles gambiae str. PEST]
          Length = 479

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 69/95 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN HK  TLAEIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 164 KPPYSYISLITMAIQNNPHKMLTLAEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 223

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG++WTL     +MFENG Y RR++
Sbjct: 224 KVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 258


>gi|319740954|gb|ADV68997.1| forkhead box d [Patiria miniata]
          Length = 247

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+ I  +I  +FPY+ +    WQNSIRHNLSLNDCF+
Sbjct: 127 KPPYSYIALITMAILQSPQKRLTLSGICEFIMNRFPYYREKFPIWQNSIRHNLSLNDCFI 186

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           K+ +E     KGNYWTL    EDMF+NG++ RRR+R KR
Sbjct: 187 KIPREPGNPGKGNYWTLDPASEDMFDNGSFLRRRKRYKR 225


>gi|313225419|emb|CBY06893.1| unnamed protein product [Oikopleura dioica]
          Length = 562

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 72/103 (69%), Gaps = 1/103 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL+EIYN+I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 102 KPPYSYISLITMAIQQSPQKMMTLSEIYNWIMELFPYYRQNQQRWQNSIRHSLSFNDCFV 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRT 389
           KV +      KG+YW L     +MFENG Y RR++R K P +T
Sbjct: 162 KVPRSPDKPGKGSYWALHDDAGNMFENGCYLRRQKRFKCPQKT 204


>gi|238054013|ref|NP_001153927.1| forkhead box D5 [Oryzias latipes]
 gi|226441719|gb|ACO57462.1| forkhead box D5 [Oryzias latipes]
          Length = 342

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 93/164 (56%), Gaps = 14/164 (8%)

Query: 213 EPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKV 272
           E K  I+GE   VQ  K   QE  T         +++  SS+P SS       S  S   
Sbjct: 19  EEKVNIVGEVEEVQRGKCG-QERLT----DTGSTAEECDSSEPDSSG-----ESENSFCT 68

Query: 273 SSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGW 332
             PI   SST     KPPYSY+ALI MAI  +  K+ TL+ I ++I+ KFPY++     W
Sbjct: 69  EPPIKGQSSTV----KPPYSYIALITMAILQSPLKKLTLSGICDFISNKFPYYKDKFPAW 124

Query: 333 QNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           QNSIRHNLSLNDCF+K+ +E     KGNYW+L    EDMF+NG+
Sbjct: 125 QNSIRHNLSLNDCFIKIPREPGNPGKGNYWSLDPASEDMFDNGS 168


>gi|195126052|ref|XP_002007488.1| GI12979 [Drosophila mojavensis]
 gi|193919097|gb|EDW17964.1| GI12979 [Drosophila mojavensis]
          Length = 505

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNASDKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|195376161|ref|XP_002046865.1| GJ13122 [Drosophila virilis]
 gi|194154023|gb|EDW69207.1| GJ13122 [Drosophila virilis]
          Length = 508

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNASDKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|194752089|ref|XP_001958355.1| GF23559 [Drosophila ananassae]
 gi|190625637|gb|EDV41161.1| GF23559 [Drosophila ananassae]
          Length = 508

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|18858701|ref|NP_571804.1| forkhead box C1-B [Danio rerio]
 gi|82247018|sp|Q9DE24.1|FXC1B_DANRE RecName: Full=Forkhead box C1-B
 gi|12004940|gb|AAG44242.1|AF219950_1 forkhead transcription factor c1.2 [Danio rerio]
 gi|28279751|gb|AAH46028.1| Forkhead box C1b [Danio rerio]
          Length = 433

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 71/100 (71%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P+    D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 64  APAQQPKDMVKPPYSYIALITMAIQNSSDKKITLNGIYQFIMERFPFYRDNKQGWQNSIR 123

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 124 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 163


>gi|57337374|emb|CAH69695.1| forkhead transcription factor [Branchiostoma floridae]
          Length = 436

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 10/135 (7%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI ++  KR TL+EIY ++  +FP+F    +GW+NS+RHNLSLN+CF+
Sbjct: 53  KPPYSYIALIVMAIQSSATKRLTLSEIYQFLQQRFPFFRGPYQGWKNSVRHNLSLNECFI 112

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPY------LGDM 401
           K+ K      KG+YWT+    E MFE G++    R++R  +      KPY      L +M
Sbjct: 113 KLPKGLGRPGKGHYWTIDPASEFMFEEGSFAGDARVRRKCQA----LKPYGMLNLLLNNM 168

Query: 402 YAHQNLIGRDIFSAT 416
               +++G D+ S +
Sbjct: 169 VGSASMLGYDMLSGS 183


>gi|147903203|ref|NP_001091120.1| forkhead box protein I1c [Xenopus laevis]
 gi|82243594|sp|Q8JIT5.1|FXI1C_XENLA RecName: Full=Forkhead box protein I1c; Short=FoxI1c;
           Short=xFoxI1c; AltName: Full=Fork head domain-related
           protein 10; Short=xFD-10
 gi|21104357|emb|CAD31849.1| FoxI1c protein [Xenopus laevis]
 gi|213623170|gb|AAI69385.1| FoxI1c protein [Xenopus laevis]
 gi|213626386|gb|AAI69357.1| FoxI1c protein [Xenopus laevis]
          Length = 381

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   K+ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 129 RPPYSYSALIAMAIQNAPEKKLTLSQIYQYVAENFPFYKRSKAGWQNSIRHNLSLNDCFK 188

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 189 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 218


>gi|351708793|gb|EHB11712.1| Forkhead box protein S1 [Heterocephalus glaber]
          Length = 533

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 86/139 (61%)

Query: 239 PRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIA 298
           P N+  K     S      +S  P  SS  S++   P   P    T+  KPPYSY+ALIA
Sbjct: 144 PFNQPGKAVPDTSPGHLCLASVVPAASSLGSMQQPPPPPGPLVPATEPTKPPYSYIALIA 203

Query: 299 MAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERK 358
           MAI ++  +RATL+ IY+YI  +F ++  N+ GWQNSIRHNLSLN+CFVKV ++     K
Sbjct: 204 MAIQSSPGQRATLSGIYHYIMGRFAFYRHNRPGWQNSIRHNLSLNECFVKVPRDDRKPGK 263

Query: 359 GNYWTLATKHEDMFENGNY 377
           G+YWTL     DMF++G++
Sbjct: 264 GSYWTLDPDCHDMFQHGSF 282


>gi|258503969|gb|ACV72709.1| UNC-130 [Caenorhabditis remanei]
          Length = 286

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAM+I N+  K+ TL+EI  +I  +F Y+++    WQNSIRHNLSLNDCFV
Sbjct: 116 KPPYSYIALIAMSIINSPGKKLTLSEICEFIINRFEYYKEKFPAWQNSIRHNLSLNDCFV 175

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KGNYW L  K EDMF+NG++ RRR+
Sbjct: 176 KVPRGPGNPGKGNYWALDPKCEDMFDNGSFLRRRK 210


>gi|312373104|gb|EFR20921.1| hypothetical protein AND_18290 [Anopheles darlingi]
          Length = 546

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 69/90 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N+  K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 60  KPPYSYIALIAMAIQNSADKKITLNGIYQYIMDRFPYYRDNKQGWQNSIRHNLSLNECFV 119

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 120 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 149


>gi|258503965|gb|ACV72707.1| UNC-130 [Caenorhabditis remanei]
 gi|258503967|gb|ACV72708.1| UNC-130 [Caenorhabditis remanei]
 gi|258503971|gb|ACV72710.1| UNC-130 [Caenorhabditis remanei]
 gi|258503975|gb|ACV72712.1| UNC-130 [Caenorhabditis remanei]
 gi|258503977|gb|ACV72713.1| UNC-130 [Caenorhabditis remanei]
 gi|258503979|gb|ACV72714.1| UNC-130 [Caenorhabditis remanei]
 gi|258503981|gb|ACV72715.1| UNC-130 [Caenorhabditis remanei]
 gi|258503983|gb|ACV72716.1| UNC-130 [Caenorhabditis remanei]
 gi|258503985|gb|ACV72717.1| UNC-130 [Caenorhabditis remanei]
 gi|258503987|gb|ACV72718.1| UNC-130 [Caenorhabditis remanei]
 gi|258503989|gb|ACV72719.1| UNC-130 [Caenorhabditis remanei]
          Length = 286

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAM+I N+  K+ TL+EI  +I  +F Y+++    WQNSIRHNLSLNDCFV
Sbjct: 116 KPPYSYIALIAMSIINSPGKKLTLSEICEFIINRFEYYKEKFPAWQNSIRHNLSLNDCFV 175

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KGNYW L  K EDMF+NG++ RRR+
Sbjct: 176 KVPRGPGNPGKGNYWALDPKCEDMFDNGSFLRRRK 210


>gi|312379107|gb|EFR25491.1| hypothetical protein AND_09124 [Anopheles darlingi]
          Length = 510

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 69/95 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN HK  TLAEIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQNNPHKMLTLAEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG++WTL     +MFENG Y RR++
Sbjct: 230 KVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 264


>gi|258503959|gb|ACV72704.1| UNC-130 [Caenorhabditis remanei]
          Length = 286

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAM+I N+  K+ TL+EI  +I  +F Y+++    WQNSIRHNLSLNDCFV
Sbjct: 116 KPPYSYIALIAMSIINSPGKKLTLSEICEFIINRFEYYKEKFPAWQNSIRHNLSLNDCFV 175

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KGNYW L  K EDMF+NG++ RRR+
Sbjct: 176 KVPRGPGNPGKGNYWALDPKCEDMFDNGSFLRRRK 210


>gi|157134848|ref|XP_001656472.1| forkhead protein/ forkhead protein domain [Aedes aegypti]
 gi|108881332|gb|EAT45557.1| AAEL003163-PA [Aedes aegypti]
          Length = 435

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI+MAI NN H+  TLAEIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 150 KPPYSYISLISMAIKNNPHQMLTLAEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 209

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG++WTL     +MFENG Y RR++
Sbjct: 210 KVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 244


>gi|83318917|emb|CAJ38796.1| fork head protein [Platynereis dumerilii]
          Length = 517

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 72/102 (70%), Gaps = 1/102 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  + +K  TLAEIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 158 KPPYSYISLITMAIQQSPNKMCTLAEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 217

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVR 388
           KV +      KG+YWTL     +MFENG Y RR++R K P +
Sbjct: 218 KVPRSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCPKK 259


>gi|195013105|ref|XP_001983802.1| GH15375 [Drosophila grimshawi]
 gi|193897284|gb|EDV96150.1| GH15375 [Drosophila grimshawi]
          Length = 508

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNASDKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|195348545|ref|XP_002040809.1| GM22139 [Drosophila sechellia]
 gi|194122319|gb|EDW44362.1| GM22139 [Drosophila sechellia]
          Length = 507

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|258503961|gb|ACV72705.1| UNC-130 [Caenorhabditis remanei]
 gi|258503963|gb|ACV72706.1| UNC-130 [Caenorhabditis remanei]
 gi|258503973|gb|ACV72711.1| UNC-130 [Caenorhabditis remanei]
          Length = 286

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAM+I N+  K+ TL+EI  +I  +F Y+++    WQNSIRHNLSLNDCFV
Sbjct: 116 KPPYSYIALIAMSIINSPGKKLTLSEICEFIINRFEYYKEKFPAWQNSIRHNLSLNDCFV 175

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KGNYW L  K EDMF+NG++ RRR+
Sbjct: 176 KVPRGPGNPGKGNYWALDPKCEDMFDNGSFLRRRK 210


>gi|241752014|ref|XP_002406075.1| transcription factor, putative [Ixodes scapularis]
 gi|215506047|gb|EEC15541.1| transcription factor, putative [Ixodes scapularis]
          Length = 349

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 74/109 (67%), Gaps = 1/109 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P  +T    KPPYSY++L  MAI +++ K  TL++IY +I  +FPY+ KN + WQNS+RH
Sbjct: 4   PGRSTYGDQKPPYSYISLTFMAIQSSQEKMLTLSDIYKFIMDRFPYYRKNTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRP 386
           NLS NDCF+K+ +      KG+YW L     DMFENG++ RRR+R K P
Sbjct: 64  NLSFNDCFIKIPRRPDRPGKGSYWALHPACGDMFENGSFLRRRKRFKLP 112


>gi|194875600|ref|XP_001973629.1| GG13233 [Drosophila erecta]
 gi|190655412|gb|EDV52655.1| GG13233 [Drosophila erecta]
          Length = 507

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|2829129|gb|AAC15420.1| forkhead-related transcription factor FREAC-10 [Homo sapiens]
          Length = 111

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P + TT+  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRH
Sbjct: 1   PGAPTTEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRH 60

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           NLSLN+CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 61  NLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 99


>gi|50344334|emb|CAE51209.1| forkhead foxD [Suberites domuncula]
          Length = 444

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 69/97 (71%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI+++ +K  TL EI +YI  +F Y+ K    WQNSIRHNLSLND
Sbjct: 69  DDIKPPYSYIALIAMAISHSPNKMLTLGEICDYIIHQFTYYHKRWPAWQNSIRHNLSLND 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRR 381
           CF+KV +E     KGN+W L     +MF+NG++ RRR
Sbjct: 129 CFIKVPREYGSSGKGNFWKLHPASSEMFKNGSFLRRR 165


>gi|17975538|ref|NP_524202.1| crocodile [Drosophila melanogaster]
 gi|2506416|sp|P32027.2|CROC_DROME RecName: Full=Fork head domain-containing protein crocodile;
           AltName: Full=FKH protein FD1
 gi|1245868|gb|AAB35643.1| crocodile [Drosophila melanogaster]
 gi|7296440|gb|AAF51727.1| crocodile [Drosophila melanogaster]
 gi|25012922|gb|AAN71548.1| RH24787p [Drosophila melanogaster]
 gi|220942506|gb|ACL83796.1| croc-PA [synthetic construct]
 gi|220952722|gb|ACL88904.1| croc-PA [synthetic construct]
          Length = 508

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|195476929|ref|XP_002086269.1| GE22970 [Drosophila yakuba]
 gi|194186059|gb|EDW99670.1| GE22970 [Drosophila yakuba]
          Length = 507

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|340375766|ref|XP_003386405.1| PREDICTED: hypothetical protein LOC100634102 [Amphimedon
           queenslandica]
          Length = 418

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 92/168 (54%), Gaps = 8/168 (4%)

Query: 214 PKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVS 273
           P + I+G N+ V +  P P      P   + +V     + +  +   P     + S+   
Sbjct: 13  PPRPIMGTNA-VPSSTPPPLTKAPAPAEIENQVKTTKEAQKAEAQKKPRSRKKAASV--- 68

Query: 274 SPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQ 333
               S +    D  KPPYSY+ALIAMAI+ + +K  TL EI ++I  +F Y+ K    WQ
Sbjct: 69  ----SGTECREDDVKPPYSYIALIAMAISQSPNKMLTLGEICDFIIQQFAYYRKRWPAWQ 124

Query: 334 NSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRR 381
           NSIRHNLSLNDCF+KV +E     KGN+W L     +MF+NG++ RRR
Sbjct: 125 NSIRHNLSLNDCFIKVPREYGSSGKGNFWKLHPASAEMFKNGSFLRRR 172


>gi|198466929|ref|XP_001354188.2| GA18636 [Drosophila pseudoobscura pseudoobscura]
 gi|198149617|gb|EAL31240.2| GA18636 [Drosophila pseudoobscura pseudoobscura]
          Length = 523

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|195174482|ref|XP_002028002.1| GL15055 [Drosophila persimilis]
 gi|194115724|gb|EDW37767.1| GL15055 [Drosophila persimilis]
          Length = 423

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|313247137|emb|CBY35960.1| unnamed protein product [Oikopleura dioica]
          Length = 161

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 68/91 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAM+I N   KR TLA+IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 71  RPPYSYSALIAMSIQNAPDKRLTLAQIYQYVADNFPFYKRSKAGWQNSIRHNLSLNDCFR 130

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYR 378
           KV ++     KGNYW L    E MF+NGN+R
Sbjct: 131 KVPRDENDPGKGNYWQLDNNCEKMFDNGNFR 161


>gi|9309317|dbj|BAB03200.1| winged helix/forkhead transcription factor DjFoxA [Dugesia
           japonica]
          Length = 485

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 73/102 (71%), Gaps = 1/102 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N+     TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 108 KPPYSYISLITMAIQNSPVNMCTLSEIYQFIMDHFPYYRQNQQRWQNSIRHSLSFNDCFV 167

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVR 388
           KV++      KG+YWTL  +  +MFENG Y RR++R K P R
Sbjct: 168 KVSRSPEKPGKGSYWTLHPQSGNMFENGCYLRRQKRFKDPHR 209


>gi|195592146|ref|XP_002085797.1| GD12117 [Drosophila simulans]
 gi|194197806|gb|EDX11382.1| GD12117 [Drosophila simulans]
          Length = 491

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 70  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 129

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 130 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 159


>gi|410933080|ref|XP_003979920.1| PREDICTED: forkhead box C1-A-like, partial [Takifugu rubripes]
          Length = 307

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 70/100 (70%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 46  TPQPQPKDMVKPPYSYIALITMAIQNSPDKKVTLNGIYQFIMERFPFYRDNKQGWQNSIR 105

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 106 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 145


>gi|195011574|ref|XP_001983216.1| GH15773 [Drosophila grimshawi]
 gi|193896698|gb|EDV95564.1| GH15773 [Drosophila grimshawi]
          Length = 350

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 71/98 (72%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++   +R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 92  KPPFSYIALIAMAISSAPSQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 151

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           KVA+        + AG  KG+YW L     DMFE GNY
Sbjct: 152 KVARDKNTIEDNDSAG--KGSYWMLDASATDMFEQGNY 187


>gi|386783809|gb|AFJ24799.1| forkhead box A-1 [Schmidtea mediterranea]
          Length = 485

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 73/102 (71%), Gaps = 1/102 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N+     TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 108 KPPYSYISLITMAIQNSPVNMCTLSEIYQFIMDHFPYYRQNQQRWQNSIRHSLSFNDCFV 167

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVR 388
           KV++      KG+YWTL  +  +MFENG Y RR++R K P R
Sbjct: 168 KVSRSPEKPGKGSYWTLHPQSGNMFENGCYLRRQKRFKDPHR 209


>gi|34147250|ref|NP_899016.1| forkhead box protein I2 [Mus musculus]
 gi|26337213|dbj|BAC32291.1| unnamed protein product [Mus musculus]
 gi|66794617|gb|AAH96623.1| Forkhead box I2 [Mus musculus]
 gi|124376454|gb|AAI32502.1| Forkhead box I2 [Mus musculus]
 gi|148685855|gb|EDL17802.1| forkhead box I2 [Mus musculus]
          Length = 329

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 117 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 176

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 177 KVPRDENDPGKGNYWTLDPNCEKMFDNGNF 206


>gi|195428641|ref|XP_002062380.1| GK17509 [Drosophila willistoni]
 gi|194158465|gb|EDW73366.1| GK17509 [Drosophila willistoni]
          Length = 413

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 73/98 (74%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 105 KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 164

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           KVA+        + AG  KG+YW L +   DMFE GNY
Sbjct: 165 KVARDKNTIDDNDSAG--KGSYWMLDSSASDMFEQGNY 200


>gi|76880472|ref|NP_954714.2| forkhead box protein D4-like 4 [Homo sapiens]
 gi|149944560|ref|NP_001092749.1| forkhead box D4-like 2 [Homo sapiens]
 gi|158518651|sp|Q8WXT5.2|FX4L4_HUMAN RecName: Full=Forkhead box protein D4-like 4; Short=FOXD4-like 4;
           AltName: Full=Forkhead box protein D4B; AltName:
           Full=Myeloid factor-gamma
 gi|327478510|sp|Q6VB85.2|FX4L2_HUMAN RecName: Full=Forkhead box protein D4-like 2; Short=FOXD4-like 2
 gi|225000766|gb|AAI72340.1| Forkhead box D4-like 4 [synthetic construct]
          Length = 416

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|440912532|gb|ELR62093.1| Forkhead box protein S1 [Bos grunniens mutus]
          Length = 330

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 68/91 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSLN+CF
Sbjct: 17  TKPPYSYIALIAMAIQNSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSLNECF 76

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           VKV ++     KG+YWTL     DMFE+G++
Sbjct: 77  VKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|58865752|ref|NP_001012091.1| forkhead box protein S1 [Rattus norvegicus]
 gi|57870620|gb|AAH89055.1| Forkhead box S1 [Rattus norvegicus]
 gi|149031007|gb|EDL86034.1| rCG37488 [Rattus norvegicus]
          Length = 327

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 72/95 (75%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           +T+ +KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSL
Sbjct: 13  STEPSKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSL 72

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           N+CFVKV ++     KG+YWTL     DMF++G++
Sbjct: 73  NECFVKVPRDDRKPGKGSYWTLDPDCHDMFQHGSF 107


>gi|18478833|gb|AAL73342.1| FOXD4b [Homo sapiens]
          Length = 416

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|242019799|ref|XP_002430346.1| Forkhead box protein C2, putative [Pediculus humanus corporis]
 gi|212515470|gb|EEB17608.1| Forkhead box protein C2, putative [Pediculus humanus corporis]
          Length = 171

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 70/92 (76%), Gaps = 2/92 (2%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI++   K+ TL+ IY +I  +FPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 63  KPPYSYIALIAMAISSAPGKKITLSGIYRFIMDRFPYYRENKQGWQNSIRHNLSLNDCFV 122

Query: 348 KV--AKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+   K  +   KG+YWTL     DMFENGNY
Sbjct: 123 KIPRNKSCSSGGKGSYWTLGPGAIDMFENGNY 154


>gi|187423902|ref|NP_001119806.1| forkhead box protein D4-like 5 [Homo sapiens]
 gi|74747187|sp|Q5VV16.1|FX4L5_HUMAN RecName: Full=Forkhead box protein D4-like 5; Short=FOXD4-like 5
          Length = 416

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|307186112|gb|EFN71837.1| Fork head domain transcription factor slp2 [Camponotus floridanus]
          Length = 412

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 71/122 (58%), Gaps = 3/122 (2%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSY ALI MAI  +  KR TL  IY YI   FPY+E NK+GWQNSIRHNLSLN C
Sbjct: 102 AEKPPYSYNALIMMAIRQSPDKRLTLNGIYEYIMRHFPYYENNKQGWQNSIRHNLSLNKC 161

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMF---ENGNYRRRRRMKRPVRTPSYNAKPYLGDMY 402
           FVKV +      KGNYW L    ED+F     G  RRR       R  ++     LG +Y
Sbjct: 162 FVKVPRHYDDPGKGNYWMLDPSSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSVVLGGLY 221

Query: 403 AH 404
            H
Sbjct: 222 PH 223


>gi|165979115|gb|ABY77003.1| FoxC1 [Scyliorhinus canicula]
          Length = 462

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 70/100 (70%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           SP     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIR
Sbjct: 61  SPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRENKQGWQNSIR 120

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 121 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 160


>gi|391332490|ref|XP_003740667.1| PREDICTED: uncharacterized protein LOC100899030 [Metaseiulus
           occidentalis]
          Length = 478

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 2/113 (1%)

Query: 275 PISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQN 334
           P + P  T  D  KPPYSY++L  MAI +++ K  TL EIY +I  +FPY+ KN + WQN
Sbjct: 137 PSTGPCPTYGD-QKPPYSYISLTFMAIQSSKEKMLTLNEIYKFIMDRFPYYRKNTQRWQN 195

Query: 335 SIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRP 386
           S+RHNLS NDCF+K+ +      KG+YW L     DMFENG++ RRR+R K P
Sbjct: 196 SLRHNLSFNDCFIKIPRRPDRPGKGSYWALHPSCGDMFENGSFLRRRKRFKLP 248


>gi|410922008|ref|XP_003974475.1| PREDICTED: forkhead box C1-A-like [Takifugu rubripes]
          Length = 480

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 71/100 (71%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++ +NK+GWQNSIR
Sbjct: 62  TPQHQPKDMVKPPYSYIALITMAIQNSAEKKITLNGIYQFIMERFPFYRENKQGWQNSIR 121

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 122 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|297687649|ref|XP_002821322.1| PREDICTED: forkhead box protein I2 [Pongo abelii]
          Length = 318

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|88911320|sp|Q3I5G5.1|FOXI2_MOUSE RecName: Full=Forkhead box protein I2
 gi|67764087|gb|AAY79175.1| FOXI2 [Mus musculus]
          Length = 311

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 99  RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 158

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 159 KVPRDENDPGKGNYWTLDPNCEKMFDNGNF 188


>gi|296199893|ref|XP_002747423.1| PREDICTED: forkhead box protein S1 [Callithrix jacchus]
          Length = 532

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 70/93 (75%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           +S KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSLN+
Sbjct: 217 ESTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSLNE 276

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 277 CFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 309


>gi|410172456|ref|XP_003960502.1| PREDICTED: forkhead box protein D4-like 6-like [Homo sapiens]
          Length = 342

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  N HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 33  KPPYSYIALITMAILQNPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 92

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 93  KIPREPGHPGKGNYWSLDPASQDMFDNGS 121


>gi|297714389|ref|XP_002833633.1| PREDICTED: forkhead box protein I2-like [Pongo abelii]
          Length = 318

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|153792107|ref|NP_001093186.1| forkhead box protein S1 [Bos taurus]
 gi|148744201|gb|AAI42121.1| FOXS1 protein [Bos taurus]
          Length = 330

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 68/91 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSLN+CF
Sbjct: 17  TKPPYSYIALIAMAIQNSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSLNECF 76

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           VKV ++     KG+YWTL     DMFE+G++
Sbjct: 77  VKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|62641537|ref|XP_341950.2| PREDICTED: forkhead box protein I2 [Rattus norvegicus]
 gi|109463067|ref|XP_001056035.1| PREDICTED: forkhead box protein I2 [Rattus norvegicus]
 gi|149061367|gb|EDM11790.1| forkhead box I2 [Rattus norvegicus]
          Length = 337

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 125 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 184

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 185 KVPRDENDPGKGNYWTLDPNCEKMFDNGNF 214


>gi|296481174|tpg|DAA23289.1| TPA: forkhead box S1 [Bos taurus]
          Length = 330

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 68/91 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSLN+CF
Sbjct: 17  TKPPYSYIALIAMAIQNSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSLNECF 76

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           VKV ++     KG+YWTL     DMFE+G++
Sbjct: 77  VKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|332263935|ref|XP_003281005.1| PREDICTED: forkhead box protein I2 [Nomascus leucogenys]
          Length = 318

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|34596585|gb|AAQ76880.1| FOXD4-like 3 [Homo sapiens]
 gi|225000106|gb|AAI72341.1| Forkhead box D4-like 3 [synthetic construct]
          Length = 417

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|328708286|ref|XP_003243644.1| PREDICTED: hypothetical protein LOC100573152 [Acyrthosiphon pisum]
          Length = 422

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   KR TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 65  DMVKPPYSYIALIAMAIQNASDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 124

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVK  ++     KG+YWTL     +MF+NG+Y
Sbjct: 125 CFVKQPRDDKKPGKGSYWTLDPDSYNMFDNGSY 157


>gi|157042770|ref|NP_954586.4| forkhead box protein D4-like 2 [Homo sapiens]
 gi|317373356|sp|Q6VB84.2|FX4L3_HUMAN RecName: Full=Forkhead box protein D4-like 3; Short=FOXD4-like 3
 gi|225000628|gb|AAI72338.1| Forkhead box D4-like 3 [synthetic construct]
          Length = 417

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|260815573|ref|XP_002602547.1| hypothetical protein BRAFLDRAFT_266592 [Branchiostoma floridae]
 gi|18653452|gb|AAK85731.1| winged helix transcription factor AmphiFoxE4 [Branchiostoma
           floridae]
 gi|229287858|gb|EEN58559.1| hypothetical protein BRAFLDRAFT_266592 [Branchiostoma floridae]
          Length = 381

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 64/89 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALI+MAI N+  ++ TL  IY +I  +FPY+    K WQNSIRHNL+LNDCF
Sbjct: 61  GKPPYSYIALISMAIANSPERKLTLGGIYKFIMDRFPYYRDRDKKWQNSIRHNLTLNDCF 120

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 121 VKIPREPGRPGKGNYWTLDPAAEDMFDNG 149


>gi|34596583|gb|AAQ76879.1| FOXD4-like 2 [Homo sapiens]
          Length = 417

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|74353497|gb|AAI03888.1| Forkhead box D4-like 6 [Homo sapiens]
 gi|167773559|gb|ABZ92214.1| FOXD4-like 2 [synthetic construct]
          Length = 417

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|62857631|ref|NP_001016787.1| forkhead box protein I1c [Xenopus (Silurana) tropicalis]
 gi|118582028|sp|Q28D67.1|FXI1C_XENTR RecName: Full=Forkhead box protein I1c; Short=FoxI1c
 gi|89273893|emb|CAJ83910.1| forkhead box I1 [Xenopus (Silurana) tropicalis]
          Length = 358

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N   K+ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 106 RPPYSYSALIAMAIQNAPEKKLTLSQIYQYVADNFPFYKRSKAGWQNSIRHNLSLNDCFK 165

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 166 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 195


>gi|146262007|ref|NP_001078945.1| forkhead box protein D4-like 6 [Homo sapiens]
 gi|166214939|sp|Q3SYB3.2|FX4L6_HUMAN RecName: Full=Forkhead box protein D4-like 6; Short=FOXD4-like 6
 gi|187950621|gb|AAI37367.1| Forkhead box D4-like 6 [Homo sapiens]
 gi|187953543|gb|AAI37366.1| Forkhead box D4-like 6 [Homo sapiens]
          Length = 417

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|148700417|gb|EDL32364.1| mCG11671 [Mus musculus]
          Length = 325

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|190576695|gb|ACE79155.1| winged helix/forkhead transcription factor FoxEa [Branchiostoma
           floridae]
          Length = 381

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 64/89 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALI+MAI N+  ++ TL  IY +I  +FPY+    K WQNSIRHNL+LNDCF
Sbjct: 61  GKPPYSYIALISMAIANSPERKLTLGGIYKFIMDRFPYYRDRDKKWQNSIRHNLTLNDCF 120

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 121 VKIPREPGRPGKGNYWTLDPAAEDMFDNG 149


>gi|403281310|ref|XP_003932135.1| PREDICTED: forkhead box protein S1 [Saimiri boliviensis
           boliviensis]
          Length = 331

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 70/93 (75%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           +S KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSLN+
Sbjct: 16  ESTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSLNE 75

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 76  CFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 108


>gi|390351966|ref|XP_003727782.1| PREDICTED: forkhead box protein C2-B [Strongylocentrotus
           purpuratus]
          Length = 519

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLND
Sbjct: 90  DMVKPPYSYIALIAMAIMNASDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLND 149

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CF+K+ ++     KG+YW+L     +MF+NG+Y
Sbjct: 150 CFIKIPRDDKKPGKGSYWSLDPDSYNMFDNGSY 182


>gi|226693365|ref|NP_076396.3| forkhead box protein I1 [Mus musculus]
 gi|150421553|sp|Q922I5.2|FOXI1_MOUSE RecName: Full=Forkhead box protein I1
 gi|127798526|gb|AAH07475.2| Forkhead box I1 [Mus musculus]
          Length = 372

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    +R TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 117 RPPYSYSALIAMAIHGAPDQRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 176

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 177 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 206


>gi|402881818|ref|XP_003904459.1| PREDICTED: forkhead box protein I2 [Papio anubis]
          Length = 318

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|118787214|ref|XP_315933.3| AGAP005902-PA [Anopheles gambiae str. PEST]
 gi|116126691|gb|EAA11069.3| AGAP005902-PA [Anopheles gambiae str. PEST]
          Length = 496

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 69/90 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N+  K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 60  KPPYSYIALIAMAIQNSADKKITLNGIYQYIMDRFPYYRDNKQGWQNSIRHNLSLNECFV 119

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 120 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 149


>gi|426361945|ref|XP_004048144.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D4-like 1-like
           [Gorilla gorilla gorilla]
          Length = 415

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|26387313|dbj|BAB31957.2| unnamed protein product [Mus musculus]
          Length = 372

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    +R TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 117 RPPYSYSALIAMAIHGAPDQRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 176

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 177 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 206


>gi|383861136|ref|XP_003706042.1| PREDICTED: uncharacterized protein LOC100878233 [Megachile
           rotundata]
          Length = 426

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 106/226 (46%), Gaps = 22/226 (9%)

Query: 181 PSDILRQAFADLDITPDQSAGRTT-SVIISNSPEPKQQILGENSNVQNKKPDPQENQTTP 239
           P   L+  F+   I P+  AG    SV  S SPE       E+S+  +   D   N+T P
Sbjct: 19  PRAALKSNFSIRSILPEACAGTPAPSVSRSTSPEISHVEDSEDSSDLDVTGD-GGNETPP 77

Query: 240 RNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAM 299
            +     +   SSS+P  +    D  S    K                KPPYSY ALI M
Sbjct: 78  LDCSRNATNSVSSSEPKDTK---DRQSDEKKKC--------------EKPPYSYNALIMM 120

Query: 300 AINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKG 359
           AI  +  KR TL  IY YI   FPY+E NK+GWQNSIRHNLSLN CFVKV +      KG
Sbjct: 121 AIRQSPEKRLTLNGIYEYIMRHFPYYENNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKG 180

Query: 360 NYWTLATKHEDMF---ENGNYRRRRRMKRPVRTPSYNAKPYLGDMY 402
           NYW L    ED+F     G  RRR       R  ++     LG +Y
Sbjct: 181 NYWMLDPSSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSVVLGGLY 226


>gi|345308141|ref|XP_003428664.1| PREDICTED: hypothetical protein LOC100681917 [Ornithorhynchus
           anatinus]
          Length = 778

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 452 TPQPQPKDMVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 511

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 512 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 551


>gi|426243424|ref|XP_004015556.1| PREDICTED: forkhead box protein C2 [Ovis aries]
          Length = 323

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 71/98 (72%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           CFVKV ++     KG+YWTL     +MFENG++ RR R
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFPRRPR 166


>gi|256074432|ref|XP_002573529.1| forkhead protein/ forkhead protein domain [Schistosoma mansoni]
 gi|350645440|emb|CCD59888.1| forkhead protein/ forkhead protein domain,putative [Schistosoma
           mansoni]
          Length = 113

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 70/91 (76%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI     ++ TL  IY +I   FPY+  N++GWQNSIRHNLSLNDCF+
Sbjct: 23  KPPYSYIALIAMAIKYAPGQKITLNGIYRFIMEHFPYYRDNRQGWQNSIRHNLSLNDCFI 82

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYR 378
           K+ ++ +   KGNYWTL+T  ++MFE+GNYR
Sbjct: 83  KLPRDKSRPGKGNYWTLSTNADEMFEHGNYR 113


>gi|449282509|gb|EMC89342.1| Forkhead box protein L1, partial [Columba livia]
          Length = 89

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 67/89 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI     ++ TL+ IY +I  +FP++  NK+GWQNSIRHNLSLNDCFV
Sbjct: 1   KPPYSYIALIAMAIKEAPEQKVTLSGIYQFIMDRFPFYHDNKQGWQNSIRHNLSLNDCFV 60

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           KV +E     KG+YWTL  +  DMFENGN
Sbjct: 61  KVPREKGRPGKGSYWTLDPRCLDMFENGN 89


>gi|332018620|gb|EGI59201.1| Fork head domain transcription factor slp2 [Acromyrmex echinatior]
          Length = 421

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 83/150 (55%), Gaps = 9/150 (6%)

Query: 261 PPDESSSTSIKVSSPISSPSST-----TTDSNKPPYSYVALIAMAINNNEHKRATLAEIY 315
           PP + S+++  VS PIS   S         + KPPYSY ALI MAI  +  KR TL  IY
Sbjct: 75  PPLDCSTSATSVS-PISQKDSKEQAEDKKKAEKPPYSYNALIMMAIRQSPEKRLTLNGIY 133

Query: 316 NYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMF--- 372
            YI   FPY+E NK+GWQNSIRHNLSLN CFVKV +      KGNYW L    ED+F   
Sbjct: 134 EYIMRHFPYYENNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSEDVFIGG 193

Query: 373 ENGNYRRRRRMKRPVRTPSYNAKPYLGDMY 402
             G  RRR       R  ++     LG +Y
Sbjct: 194 ATGKLRRRTTAASRSRLAAFKRSVVLGGLY 223


>gi|238054005|ref|NP_001153923.1| forkhead box C1a [Oryzias latipes]
 gi|226441709|gb|ACO57457.1| forkhead box C1a [Oryzias latipes]
          Length = 465

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIRHNLSLN+
Sbjct: 68  DMVKPPYSYIALITMAIQNSPEKKITLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNE 127

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 160


>gi|348539730|ref|XP_003457342.1| PREDICTED: forkhead box protein C1-like [Oreochromis niloticus]
          Length = 471

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIRHNLSLN+
Sbjct: 69  DMVKPPYSYIALITMAIQNSPEKKITLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|109090977|ref|XP_001091576.1| PREDICTED: forkhead box protein I2 [Macaca mulatta]
          Length = 318

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|47225588|emb|CAG07931.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 126

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++ +N K WQNSIRHNL+LNDCF
Sbjct: 12  GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCF 71

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF+NG
Sbjct: 72  VKIPREPGRPGKGNYWTLDPAAEDMFDNG 100


>gi|242019779|ref|XP_002430336.1| Hepatocyte nuclear factor 3-gamma, putative [Pediculus humanus
           corporis]
 gi|212515460|gb|EEB17598.1| Hepatocyte nuclear factor 3-gamma, putative [Pediculus humanus
           corporis]
          Length = 354

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 35  DMVKPPYSYIALIAMAIQNAPEKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 94

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MF+NG+Y
Sbjct: 95  CFVKVPRDDKKPGKGSYWTLDPDSYNMFDNGSY 127


>gi|213512944|ref|NP_001133703.1| Forkhead box protein C1 [Salmo salar]
 gi|209155006|gb|ACI33735.1| Forkhead box protein C1 [Salmo salar]
          Length = 478

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIRHNLSLN+
Sbjct: 71  DMVKPPYSYIALITMAIQNSPDKKVTLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNE 130

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 131 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 163


>gi|74419010|gb|ABA03230.1| forkhead domain protein C [Nematostella vectensis]
          Length = 456

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 69/96 (71%)

Query: 282 TTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLS 341
           T  D  KPPYSY+ALIAMAI +   KR TL+ IY++I  +FPY+  N +GWQNSIRHNLS
Sbjct: 73  TRQDMVKPPYSYIALIAMAIQSAPEKRITLSGIYSFIMDRFPYYRNNXQGWQNSIRHNLS 132

Query: 342 LNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           LN+CFVKV ++     KG++W L     +MFENG+Y
Sbjct: 133 LNECFVKVPRDDKKPGKGSFWMLDPDSLNMFENGSY 168


>gi|348524384|ref|XP_003449703.1| PREDICTED: forkhead box protein D1-like [Oreochromis niloticus]
          Length = 350

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 79/120 (65%), Gaps = 4/120 (3%)

Query: 257 SSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYN 316
           + SPPP   SSTS   S     P+   T   KPPYSY+ALI MAI  +  KR TL+EI +
Sbjct: 49  AGSPPPCLDSSTS---SRDTYKPAGKNTLV-KPPYSYIALITMAILQSPKKRLTLSEICD 104

Query: 317 YIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +I+ +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 105 FISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGS 164


>gi|149045264|gb|EDL98350.1| rCG44068 [Rattus norvegicus]
          Length = 526

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 29  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 88

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 89  HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 128


>gi|118343784|ref|NP_001071711.1| transcription factor protein [Ciona intestinalis]
 gi|70569595|dbj|BAE06441.1| transcription factor protein [Ciona intestinalis]
          Length = 732

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 79/120 (65%), Gaps = 3/120 (2%)

Query: 261 PPDESSSTSIKVSSPISSPSSTTTDS---NKPPYSYVALIAMAINNNEHKRATLAEIYNY 317
           P  ++ +   K+ + IS   S+  DS   N+PPYSY ALIA+AI ++  KR TL +IY Y
Sbjct: 473 PCGQAIAADDKIGADISHDGSSKDDSDTNNRPPYSYSALIALAIQSSPGKRMTLRQIYQY 532

Query: 318 IAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           +   FP+++ +K GW+NSIRHNLSLNDCF KV +      KGNYWTL    E MF+NGN+
Sbjct: 533 VVTYFPFYKNSKTGWRNSIRHNLSLNDCFKKVPRNENDPGKGNYWTLDPGSEKMFDNGNF 592


>gi|118343780|ref|NP_001071708.1| transcription factor protein [Ciona intestinalis]
 gi|70569557|dbj|BAE06434.1| transcription factor protein [Ciona intestinalis]
          Length = 511

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 96  DMVKPPYSYIALIAMAIQNAPDKKVTLNGIYQWIMERFPFYRENKQGWQNSIRHNLSLNE 155

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVK+ ++     KG+YWT+     +MFENG+Y
Sbjct: 156 CFVKIPRDDKKPGKGSYWTMDPDAYNMFENGSY 188


>gi|410932185|ref|XP_003979474.1| PREDICTED: forkhead box C1-A-like, partial [Takifugu rubripes]
          Length = 273

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 70/100 (70%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 64  TPQPQPKDMVKPPYSYIALITMAIQNSPDKKVTLNGIYQFIMERFPFYRDNKQGWQNSIR 123

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 124 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 163


>gi|18858697|ref|NP_571803.1| forkhead box C1-A [Danio rerio]
 gi|82247019|sp|Q9DE25.1|FXC1A_DANRE RecName: Full=Forkhead box C1-A
 gi|12004938|gb|AAG44241.1|AF219949_1 forkhead transcription factor c1.1 [Danio rerio]
 gi|31418753|gb|AAH53129.1| Forkhead box C1a [Danio rerio]
          Length = 476

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 70/100 (70%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 64  TPQPQPKDMVKPPYSYIALITMAIQNSPDKKVTLNGIYQFIMERFPFYRDNKQGWQNSIR 123

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 124 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 163


>gi|190576699|gb|ACE79157.1| winged helix/forkhead transcription factor FoxEb-Ei [Branchiostoma
           floridae]
          Length = 402

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALI MAI N+  ++ TLA IY +I   FPY+ +  K WQNSIRHNL+LNDC
Sbjct: 79  AGKPPYSYVALITMAIVNSPERKTTLAGIYKFIMDHFPYYREADKKWQNSIRHNLTLNDC 138

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRT 389
           FVK+A+      KG+ W L    E MF+NG+Y RRR R KR  +T
Sbjct: 139 FVKLARHPNRPGKGSLWALDPGAEGMFDNGSYLRRRSRYKRSHKT 183


>gi|395823884|ref|XP_003785206.1| PREDICTED: forkhead box protein E1 [Otolemur garnettii]
          Length = 374

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 55  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 114

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 115 LKIPREAGRPGKGNYWALDPNAEDMFESGS 144


>gi|3492787|emb|CAA73816.1| thyroid transcription factor 2 [Homo sapiens]
          Length = 371

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 52  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 111

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 112 LKIPREAGRPGKGNYWALDPNAEDMFESGS 141


>gi|397490681|ref|XP_003816324.1| PREDICTED: forkhead box protein I2 [Pan paniscus]
          Length = 318

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|21618325|ref|NP_004464.2| forkhead box protein E1 [Homo sapiens]
 gi|206729921|sp|O00358.3|FOXE1_HUMAN RecName: Full=Forkhead box protein E1; AltName: Full=Forkhead box
           protein E2; AltName: Full=Forkhead-related protein
           FKHL15; AltName: Full=HFKH4; AltName: Full=HNF-3/fork
           head-like protein 5; Short=HFKL5; AltName: Full=Thyroid
           transcription factor 2; Short=TTF-2
 gi|119579260|gb|EAW58856.1| forkhead box E1 (thyroid transcription factor 2) [Homo sapiens]
 gi|157169590|gb|AAI52745.1| Forkhead box E1 (thyroid transcription factor 2) [synthetic
           construct]
 gi|208968407|dbj|BAG74042.1| forkhead box E1 [synthetic construct]
          Length = 373

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 52  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 111

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 112 LKIPREAGRPGKGNYWALDPNAEDMFESGS 141


>gi|2078533|gb|AAC51294.1| DNA binding protein FKHL15 [Homo sapiens]
          Length = 376

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 52  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 111

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 112 LKIPREAGRPGKGNYWALDPNAEDMFESGS 141


>gi|332835358|ref|XP_003312872.1| PREDICTED: forkhead box protein I2 [Pan troglodytes]
          Length = 318

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|297684931|ref|XP_002820063.1| PREDICTED: forkhead box protein E1 [Pongo abelii]
          Length = 371

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 52  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 111

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 112 LKIPREAGRPGKGNYWALDPNAEDMFESGS 141


>gi|402896892|ref|XP_003911516.1| PREDICTED: forkhead box protein E1 [Papio anubis]
          Length = 369

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 52  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 111

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 112 LKIPREAGRPGKGNYWALDPNAEDMFESGS 141


>gi|268562229|ref|XP_002638541.1| C. briggsae CBR-PHA-4 protein [Caenorhabditis briggsae]
          Length = 477

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           T   +KPPYSY++LI MAI  +  ++ TL+EIYN+I   FPY++ +++ WQNSIRH+LS 
Sbjct: 212 TYGQSKPPYSYISLITMAIQKSATRQLTLSEIYNWIMELFPYYQNHQQRWQNSIRHSLSF 271

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPS 391
           NDCFVKVA+      KG++WTL     +MFENG Y RR++R K   R PS
Sbjct: 272 NDCFVKVARSPDKPGKGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPS 321


>gi|403289070|ref|XP_003935691.1| PREDICTED: forkhead box protein D4 [Saimiri boliviensis
           boliviensis]
          Length = 448

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 73/110 (66%)

Query: 267 STSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFE 326
            T  ++    ++ S   + + KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ 
Sbjct: 86  GTKFRIPPRYAAASGDASQAAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYR 145

Query: 327 KNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 146 RKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 195


>gi|313230717|emb|CBY08115.1| unnamed protein product [Oikopleura dioica]
          Length = 479

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 73/109 (66%), Gaps = 1/109 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI +AI  +  K+ TL EIYN+I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 118 KPPYSYISLITLAIQQSGQKQLTLNEIYNWIIELFPYYRQNQQRWQNSIRHSLSFNDCFV 177

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNAK 395
           KV +      KG+YWTL     +MFENG Y RR++R K   R    N K
Sbjct: 178 KVPRSAEKPGKGSYWTLHEDANNMFENGCYLRRQKRFKAQERLAKGNGK 226


>gi|108796159|gb|ABG21223.1| forkhead box-containing transcription factor FoxB [Clytia
           hemisphaerica]
          Length = 316

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 73/104 (70%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P  ++   +KPPYSYVAL AMAI+++  K  TL++IY +I   FP++ KN   WQNS+RH
Sbjct: 4   PRKSSYGDDKPPYSYVALCAMAIHSSPAKMMTLSQIYKFIMDNFPFYRKNSTRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCFVKV+K      KGNYWTL     +MF++G++ RR+R
Sbjct: 64  NLSFNDCFVKVSKTSEHGGKGNYWTLHQDCTEMFQDGSFLRRKR 107


>gi|449668449|ref|XP_002166230.2| PREDICTED: forkhead box protein B1-like [Hydra magnipapillata]
          Length = 234

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 75/104 (72%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P  ++ + +KPPYSYVAL AMAI+++ ++  TL++IY YI  KFP++ KN K WQNS+RH
Sbjct: 4   PRKSSYEVDKPPYSYVALCAMAIHSSPYQMMTLSDIYKYIMNKFPFYRKNNKKWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCFVK++K      KGNYWT+     +MF  G++ RR++
Sbjct: 64  NLSFNDCFVKISKTSKPGGKGNYWTMHKDCFEMFNEGSFLRRKK 107


>gi|313220795|emb|CBY31635.1| unnamed protein product [Oikopleura dioica]
          Length = 479

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 73/109 (66%), Gaps = 1/109 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI +AI  +  K+ TL EIYN+I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 118 KPPYSYISLITLAIQQSGQKQLTLNEIYNWIIELFPYYRQNQQRWQNSIRHSLSFNDCFV 177

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNAK 395
           KV +      KG+YWTL     +MFENG Y RR++R K   R    N K
Sbjct: 178 KVPRSAEKPGKGSYWTLHEDANNMFENGCYLRRQKRFKAQERLAKGNGK 226


>gi|190576697|gb|ACE79156.1| winged helix/forkhead transcription factor FoxEb-Ei [Branchiostoma
           floridae]
          Length = 402

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSYVALI MAI N+  ++ TLA IY +I   FPY+ +  K WQNSIRHNL+LNDC
Sbjct: 79  TGKPPYSYVALITMAIVNSPERKTTLAGIYKFIMDHFPYYREADKKWQNSIRHNLTLNDC 138

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           FVK+A+      KG+ W L    E MF+NG+Y RRR R KR
Sbjct: 139 FVKLARHPNRPGKGSLWALDPGAEGMFDNGSYLRRRSRYKR 179


>gi|348501210|ref|XP_003438163.1| PREDICTED: forkhead box protein C1-B-like [Oreochromis niloticus]
          Length = 472

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 70/100 (70%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 64  TPQPQPKDMVKPPYSYIALITMAIQNSPDKKVTLNGIYQFIMERFPFYRDNKQGWQNSIR 123

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 124 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 163


>gi|397499975|ref|XP_003820705.1| PREDICTED: forkhead box protein E1 [Pan paniscus]
          Length = 253

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 1/131 (0%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 52  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 111

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQN 406
           +K+ +E     KGNYW L    EDMFE+G++ RRR+  +     +Y A  Y G   A+  
Sbjct: 112 LKIPREAGRPGKGNYWALDPNAEDMFESGSFLRRRKRFKRSDLSTYPAS-YAGPDGAYPQ 170

Query: 407 LIGRDIFSATA 417
             G  IF+A  
Sbjct: 171 GAGSAIFAAAG 181


>gi|355562869|gb|EHH19463.1| hypothetical protein EGK_20173, partial [Macaca mulatta]
          Length = 235

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 29  RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 88

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 89  KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 118


>gi|82706188|gb|ABB89478.1| forkhead transcription factor C [Strongylocentrotus purpuratus]
          Length = 336

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLND
Sbjct: 90  DMVKPPYSYIALIAMAIMNASDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLND 149

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CF+K+ ++     KG+YW+L     +MF+NG+Y
Sbjct: 150 CFIKIPRDDKKPGKGSYWSLDPDSYNMFDNGSY 182


>gi|358413469|ref|XP_003582576.1| PREDICTED: forkhead box protein D4-like [Bos taurus]
          Length = 435

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 108 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 167

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 168 KIPRETGHPGKGNYWSLDPASQDMFDNGS 196


>gi|157135568|ref|XP_001656668.1| forkhead protein/ forkhead protein domain [Aedes aegypti]
 gi|157167302|ref|XP_001658606.1| forkhead protein/ forkhead protein domain [Aedes aegypti]
 gi|108870167|gb|EAT34392.1| AAEL013354-PA [Aedes aegypti]
 gi|108876322|gb|EAT40547.1| AAEL007736-PA [Aedes aegypti]
          Length = 412

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI     K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 63  KPPYSYIALIAMAIQQAPEKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 122

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 123 KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 152


>gi|56118522|ref|NP_001007864.1| forkhead box protein C1 [Xenopus (Silurana) tropicalis]
 gi|82181819|sp|Q68F77.1|FOXC1_XENTR RecName: Full=Forkhead box protein C1
 gi|51258216|gb|AAH79966.1| forkhead box C1 [Xenopus (Silurana) tropicalis]
          Length = 495

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 69  TPQPQPKDMVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMERFPFYRDNKQGWQNSIR 128

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 168


>gi|410036460|ref|XP_003309632.2| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D4 [Pan
           troglodytes]
          Length = 468

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  N HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 115 KPPYSYIALITMAILQNPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 174

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 175 KIPREPGHPGKGNYWSLDPASQDMFDNGS 203


>gi|307192426|gb|EFN75642.1| Fork head domain-containing protein crocodile [Harpegnathos
           saltator]
          Length = 435

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 67  DMVKPPYSYIALIAMAIQNAPEKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 126

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MF+NG+Y
Sbjct: 127 CFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSY 159


>gi|345329957|ref|XP_003431451.1| PREDICTED: hypothetical protein LOC100077216 [Ornithorhynchus
           anatinus]
          Length = 558

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 110 DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 169

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 170 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 202


>gi|326932046|ref|XP_003212132.1| PREDICTED: hypothetical protein LOC100542655 [Meleagris gallopavo]
          Length = 304

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 1/104 (0%)

Query: 274 SPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQ 333
           SP   PS    ++ KPPYSY+ALI MAI +   KR TL+ IY YI  +F ++  NK+GWQ
Sbjct: 20  SPYPGPS-PPAEATKPPYSYIALITMAIQSTPEKRITLSGIYRYIMGRFTFYRDNKQGWQ 78

Query: 334 NSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           NSIRHNLSLN+CFVKV ++     KGNYWTL     +MFENG++
Sbjct: 79  NSIRHNLSLNECFVKVPRDDKKPGKGNYWTLDPDCYNMFENGSF 122


>gi|91694299|gb|ABE41801.1| forkhead box e3 [Danio rerio]
          Length = 422

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 64/89 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  + P++ +N K WQNSIRHNL+LNDCF
Sbjct: 102 GKPPYSYIALIAMAIANSPERKLTLGGIYKFIMERSPFYRENSKKWQNSIRHNLTLNDCF 161

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           VK+ +E     KGNYWTL    EDMF NG
Sbjct: 162 VKIPREPGRPGKGNYWTLDPAAEDMFXNG 190


>gi|307182668|gb|EFN69802.1| Silk gland factor 1 [Camponotus floridanus]
          Length = 522

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 70/98 (71%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N  HK  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 165 KPPYSYISLITMAIQNAPHKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 224

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG++WTL     +MFENG Y RR++R K
Sbjct: 225 KVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFK 262


>gi|119615822|gb|EAW95416.1| forkhead box C2 (MFH-1, mesenchyme forkhead 1), isoform CRA_b [Homo
           sapiens]
          Length = 461

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 69/97 (71%)

Query: 281 STTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNL 340
           +   D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNL
Sbjct: 65  AAPKDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNL 124

Query: 341 SLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           SLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 125 SLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|47220394|emb|CAF98493.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 470

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 70/100 (70%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 64  TPQPQPKDMVKPPYSYIALITMAIQNSPDKKVTLNGIYQFIMERFPFYRDNKQGWQNSIR 123

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 124 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 163


>gi|47551225|ref|NP_999797.1| winged helix transcription factor Forkhead-1 [Strongylocentrotus
           purpuratus]
 gi|4929482|gb|AAD34014.1|AF149706_1 winged helix transcription factor Forkhead-1 [Strongylocentrotus
           purpuratus]
          Length = 360

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 75/109 (68%), Gaps = 1/109 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P+ +T    KPPYSY++L AMAI +++ K   L++IY +I  +FPY+ KN + WQNS+RH
Sbjct: 4   PARSTYSDAKPPYSYISLTAMAIQSSQEKMLPLSDIYKFIMDRFPYYRKNTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRP 386
           NLS NDCF+K+ +      KG+YW L     DMFENG++ RRR+R K P
Sbjct: 64  NLSFNDCFLKIPRRPDRPGKGSYWALHPLSADMFENGSFLRRRKRFKSP 112


>gi|126304727|ref|XP_001365891.1| PREDICTED: forkhead box protein C2-like [Monodelphis domestica]
          Length = 506

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 70  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 129

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 130 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 162


>gi|253722540|pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
          Length = 97

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +E     KGNYWTL  + EDMF+NG++ RRR+
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRK 96


>gi|400621244|gb|AFP87438.1| forkhead domain protein A-B-like protein [Nematostella vectensis]
          Length = 312

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 81/122 (66%), Gaps = 5/122 (4%)

Query: 262 PDESSSTSIKV--SSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P ES+  ++    ++P S P     D  KPP+SY+ALI M+I  + ++  TL EIY +I 
Sbjct: 66  PTESAQEALLTMNTNPQSKP--YLCDEVKPPFSYIALITMSIEASPYRMRTLNEIYEFIM 123

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGE-RKGNYWTLATKHEDMFENGNYR 378
            +FPYF KN++ WQNSIRHNLSLNDCFVKV +   G+  KGNYWTL     DMF +G++ 
Sbjct: 124 TRFPYFRKNQQKWQNSIRHNLSLNDCFVKVPRSIFGKPGKGNYWTLHPSCGDMFGSGSFL 183

Query: 379 RR 380
           RR
Sbjct: 184 RR 185


>gi|345495115|ref|XP_001605424.2| PREDICTED: forkhead box protein C2-A [Nasonia vitripennis]
          Length = 234

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 78/115 (67%), Gaps = 14/115 (12%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KP YSY+ALI MAI ++  +R TL+ IY YI  +FPY+  N++GWQNSIRHNLSLN+CFV
Sbjct: 69  KPAYSYIALITMAIESSPKRRLTLSGIYRYIMDRFPYYRDNRQGWQNSIRHNLSLNECFV 128

Query: 348 KVAK------EGAGE-----RKGNYWTLATKHEDMFENGNYRR---RRRMKRPVR 388
           K+ +      E  GE      KG++WTL      MFENGNYRR   RR+M++ V+
Sbjct: 129 KLPRDKVVDGETGGEGQGCCGKGSFWTLDPSASGMFENGNYRRRKTRRQMQQRVK 183


>gi|195038946|ref|XP_001990839.1| GH18036 [Drosophila grimshawi]
 gi|193895035|gb|EDV93901.1| GH18036 [Drosophila grimshawi]
          Length = 294

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 72/107 (67%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P  TT    KPPYSY++L AMAI  +  K  +L++IY +I  +FPY+  N + WQNS+RH
Sbjct: 4   PLKTTYGDQKPPYSYISLTAMAILQSPQKMLSLSDIYRFIMEQFPYYRNNMQKWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR 385
           NLS NDCF+KV +  +   KG+YWTL  K  DMFENG+  RRR+  R
Sbjct: 64  NLSFNDCFIKVPRNISKAGKGSYWTLHPKAFDMFENGSLLRRRKRFR 110


>gi|348573081|ref|XP_003472320.1| PREDICTED: forkhead box protein D4-like [Cavia porcellus]
          Length = 419

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%)

Query: 240 RNKKTKVSQKNSSSQPSSSSPPPDESS-STSIKVSSPISSPSSTTTDSNKPPYSYVALIA 298
           R +K     +   ++    S P D S      K  +  ++ S       KPPYSY+ALI 
Sbjct: 49  RGQKCLEQPRRPGTRTEGGSCPSDSSGFGREFKAPARCAAASGDAPQPAKPPYSYIALIT 108

Query: 299 MAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERK 358
           MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     K
Sbjct: 109 MAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGK 168

Query: 359 GNYWTLATKHEDMFENGN 376
           GNYW+L    +DMF+NG+
Sbjct: 169 GNYWSLDPASQDMFDNGS 186


>gi|380021495|ref|XP_003694600.1| PREDICTED: fork head domain transcription factor slp1-like [Apis
           florea]
          Length = 427

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY ALI MAI  +  KR TL  IY YI   FPY+E NK+GWQNSIRHNLSLN CFV
Sbjct: 109 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMRHFPYYENNKQGWQNSIRHNLSLNKCFV 168

Query: 348 KVAKEGAGERKGNYWTLATKHEDMF---ENGNYRRRRRMKRPVRTPSYNAKPYLGDMY 402
           KV +      KGNYW L    ED+F     G  RRR       R  ++     LG +Y
Sbjct: 169 KVPRHYDDPGKGNYWMLDPSSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSVVLGGLY 226


>gi|395736634|ref|XP_002816393.2| PREDICTED: uncharacterized protein LOC100443984 [Pongo abelii]
          Length = 662

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|3228522|gb|AAC24209.1| mesoderm/mesenchyme forkhead 1 [Mus musculus]
          Length = 553

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|50345972|ref|NP_032618.2| forkhead box protein C1 [Mus musculus]
 gi|341941095|sp|Q61572.3|FOXC1_MOUSE RecName: Full=Forkhead box protein C1; AltName:
           Full=Forkhead-related protein FKHL7; AltName:
           Full=Forkhead-related transcription factor 3;
           Short=FREAC-3; AltName: Full=Mesoderm/mesenchyme
           forkhead 1; Short=MF-1; AltName: Full=Transcription
           factor FKH-1
 gi|3805941|emb|CAA11239.1| FKH1/MF1 protein [Mus musculus]
 gi|30354119|gb|AAH52011.1| Forkhead box C1 [Mus musculus]
 gi|74190395|dbj|BAE25882.1| unnamed protein product [Mus musculus]
          Length = 553

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|240955404|ref|XP_002399810.1| forkhead domain-containing protein, putative [Ixodes scapularis]
 gi|215490638|gb|EEC00281.1| forkhead domain-containing protein, putative [Ixodes scapularis]
          Length = 231

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 118 DMVKPPYSYIALIAMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 177

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG++WTL     +MF+NG+Y
Sbjct: 178 CFVKVPRDDKKPGKGSFWTLDPDSVNMFDNGSY 210


>gi|194034063|ref|XP_001925267.1| PREDICTED: forkhead box protein E1-like [Sus scrofa]
          Length = 373

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 53  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 112

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 113 LKIPREAGRPGKGNYWALDPNAEDMFESGS 142


>gi|148691780|gb|EDL23727.1| forkhead box I1, isoform CRA_b [Mus musculus]
          Length = 345

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI+    +R TL++IY Y+A  FP++ K+K GWQNSIRHNLSLNDCF 
Sbjct: 90  RPPYSYSALIAMAIHGAPDQRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 149

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 150 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 179


>gi|426222338|ref|XP_004005351.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D4-like 1
           [Ovis aries]
          Length = 404

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 7/148 (4%)

Query: 229 KPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNK 288
           +P PQE +   R       +      PS+SS            VS+  ++ S       K
Sbjct: 55  QPQPQEARE--RGGAPPGERTEGCGGPSNSS-----EFCRKFGVSTGSTAVSRDAPQPAK 107

Query: 289 PPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVK 348
           PPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFVK
Sbjct: 108 PPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVK 167

Query: 349 VAKEGAGERKGNYWTLATKHEDMFENGN 376
           + +E     KGNYW+L    +DMF+NG+
Sbjct: 168 IPREPGHPGKGNYWSLDPASQDMFDNGS 195


>gi|296221466|ref|XP_002756757.1| PREDICTED: forkhead box protein I2 [Callithrix jacchus]
          Length = 318

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDDDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|426218713|ref|XP_004003583.1| PREDICTED: forkhead box protein D2 [Ovis aries]
          Length = 574

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 68/99 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +PS       KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIR
Sbjct: 208 APSKPKNSLVKPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIR 267

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 268 HNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGS 306


>gi|354507551|ref|XP_003515819.1| PREDICTED: forkhead box protein I2-like [Cricetulus griseus]
          Length = 270

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 58  RPPYSYSALIAMAIQSAPLRKLTLSQIYQYVASNFPFYKRSKAGWQNSIRHNLSLNDCFK 117

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 118 KVPRDENDPGKGNYWTLDPNCEKMFDNGNF 147


>gi|33563254|ref|NP_034356.1| forkhead box protein S1 [Mus musculus]
 gi|57015314|sp|Q61574.2|FOXS1_MOUSE RecName: Full=Forkhead box protein S1; AltName: Full=Forkhead-like
           18 protein; AltName: Full=Forkhead-related transcription
           factor 10; Short=FREAC-10; AltName: Full=Transcription
           factor FKH-3
 gi|26346851|dbj|BAC37074.1| unnamed protein product [Mus musculus]
 gi|66910219|gb|AAH96604.1| Forkhead box S1 [Mus musculus]
 gi|74220354|dbj|BAE31404.1| unnamed protein product [Mus musculus]
 gi|124297563|gb|AAI31938.1| Forkhead box S1 [Mus musculus]
 gi|124297789|gb|AAI31940.1| Forkhead box S1 [Mus musculus]
          Length = 329

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 70/95 (73%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           + +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSL
Sbjct: 13  SAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSL 72

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           N+CFVKV ++     KG+YWTL     DMF++G++
Sbjct: 73  NECFVKVPRDDRKPGKGSYWTLDPDCHDMFQHGSF 107


>gi|332016884|gb|EGI57693.1| Fork head domain-containing protein crocodile [Acromyrmex
           echinatior]
          Length = 495

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 66  DMVKPPYSYIALIAMAIQNAPDKKITLNGIYQFIMDRFPYYRENKQGWQNSIRHNLSLNE 125

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MF+NG+Y
Sbjct: 126 CFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSY 158


>gi|426351403|ref|XP_004043236.1| PREDICTED: forkhead box protein C1 [Gorilla gorilla gorilla]
          Length = 445

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|218675730|gb|AAI69306.2| forkhead box C1 [synthetic construct]
          Length = 310

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|348537891|ref|XP_003456426.1| PREDICTED: hepatocyte nuclear factor 3-beta-like [Oreochromis
           niloticus]
          Length = 466

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 154 KPPYSYISLITMAIQQSGSKMLTLNEIYQWIMNLFPYYRENQQRWQNSIRHSLSFNDCFV 213

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL  +  +MFENG Y RR++
Sbjct: 214 KVARSPDKPGKGSYWTLHPQSGNMFENGCYLRRQK 248


>gi|147906673|ref|NP_001081722.1| forkhead box D4-like 1, gene 1 [Xenopus laevis]
 gi|148539636|ref|NP_001091898.1| forkhead box protein D5-B [Xenopus laevis]
 gi|82248109|sp|Q9PT68.1|FXD5B_XENLA RecName: Full=Forkhead box protein D5-B; Short=FoxD5-B;
           Short=FoxD5b; AltName: Full=Fork head domain protein 3;
           AltName: Full=Fork head domain-related protein 12';
           Short=xFD-12'; AltName: Full=Forkhead-like; Short=xFLIP;
           AltName: Full=XlFoxD5b
 gi|6980028|gb|AAF34705.1|AF223426_1 winged helix transcription factor XFD-12' [Xenopus laevis]
 gi|5042347|emb|CAB44729.1| XFD-12' protein [Xenopus laevis]
 gi|54400055|emb|CAH64538.1| Fox protein [Xenopus laevis]
 gi|189441763|gb|AAI67564.1| XFD-12' protein [Xenopus laevis]
 gi|197246328|gb|AAI68543.1| XFD-12' protein [Xenopus laevis]
 gi|213625121|gb|AAI69875.1| XFD-12' protein [Xenopus laevis]
          Length = 353

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 274 SPISSPSSTTTDS-NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGW 332
           SP +SP      +  KPPYSY+ALI MAI  + HK+ TL+ I ++I+ KFPY++     W
Sbjct: 82  SPATSPGGKAKRALVKPPYSYIALITMAILQSPHKKLTLSGICDFISSKFPYYKDKFPAW 141

Query: 333 QNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENG 375
           QNSIRHNLSLNDCF+K+ +E     KGNYWTL    EDMF+NG
Sbjct: 142 QNSIRHNLSLNDCFIKIPREPGNPGKGNYWTLDPASEDMFDNG 184


>gi|345315115|ref|XP_001519689.2| PREDICTED: forkhead box protein D2-like, partial [Ornithorhynchus
           anatinus]
          Length = 420

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 76  KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 135

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 136 KIPREPGNPGKGNYWTLDPESADMFDNGS 164


>gi|6042185|gb|AAF02177.1| fork head domain DNA binding protein [Drosophila melanogaster]
          Length = 128

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI N   K+ TL  IY YI  +FPY+  NK+GWQNSIRHNLSLN+CFV
Sbjct: 16  KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFV 75

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA++     KG+YWTL     +MF+NG++
Sbjct: 76  KVARDDKKPGKGSYWTLDPDSYNMFDNGSF 105


>gi|354480353|ref|XP_003502372.1| PREDICTED: forkhead box protein S1-like [Cricetulus griseus]
 gi|344244187|gb|EGW00291.1| Forkhead box protein S1 [Cricetulus griseus]
          Length = 329

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 70/95 (73%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           + +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSL
Sbjct: 13  SAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYGYIMGRFAFYRHNRPGWQNSIRHNLSL 72

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           N+CFVKV ++     KG+YWTL     DMF++G++
Sbjct: 73  NECFVKVPRDDRKPGKGSYWTLDPDCHDMFQHGSF 107


>gi|47215280|emb|CAF98089.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 174

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 71/100 (71%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++ +NK+GWQNSIR
Sbjct: 62  TPQHQPKDMVKPPYSYIALITMAIQNSAEKKITLNGIYQFIMERFPFYRENKQGWQNSIR 121

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 122 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|47086213|ref|NP_998078.1| forkhead box protein D1 [Danio rerio]
 gi|45501117|gb|AAH67138.1| Forkhead box D1 like [Danio rerio]
          Length = 343

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI ++I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 74  KPPYSYIALITMAILQSPKKRLTLSEICDFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 133

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 134 KIPREPGNPGKGNYWTLDPESADMFDNGS 162


>gi|403259274|ref|XP_003922144.1| PREDICTED: forkhead box protein I2 [Saimiri boliviensis
           boliviensis]
          Length = 318

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   +R TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV +      KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRNEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|322790892|gb|EFZ15558.1| hypothetical protein SINV_02679 [Solenopsis invicta]
          Length = 437

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 70/120 (58%), Gaps = 3/120 (2%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSY ALI MAI  +  KR TL  IY YI   FPY+E NK+GWQNSIRHNLSLN C
Sbjct: 117 AEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMRHFPYYENNKQGWQNSIRHNLSLNKC 176

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMF---ENGNYRRRRRMKRPVRTPSYNAKPYLGDMY 402
           FVKV +      KGNYW L    ED+F     G  RRR       R  ++     LG +Y
Sbjct: 177 FVKVPRHYDDPGKGNYWMLDPSSEDVFIGGATGKLRRRTTAASRSRLAAFKRSVVLGGLY 236


>gi|194669530|ref|XP_873930.3| PREDICTED: forkhead box protein E1 [Bos taurus]
 gi|297478003|ref|XP_002689770.1| PREDICTED: forkhead box protein E1 [Bos taurus]
 gi|296484664|tpg|DAA26779.1| TPA: forkhead box E1 (thyroid transcription factor 2) [Bos taurus]
          Length = 373

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 53  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 112

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 113 LKIPREAGRPGKGNYWALDPNAEDMFESGS 142


>gi|148227814|ref|NP_001089846.1| forkhead box protein C1-B [Xenopus laevis]
 gi|123913511|sp|Q32NP8.1|FXC1B_XENLA RecName: Full=Forkhead box protein C1-B
 gi|80478512|gb|AAI08536.1| MGC130988 protein [Xenopus laevis]
          Length = 495

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 69  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRDNKQGWQNSIR 128

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 168


>gi|47221033|emb|CAG12727.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 463

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 155 KPPYSYISLITMAIQQSSSKMLTLNEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 214

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL  +  +MFENG Y RR++
Sbjct: 215 KVARSPDKPGKGSYWTLHPQSGNMFENGCYLRRQK 249


>gi|213623982|gb|AAI70482.1| XFD-12' protein [Xenopus laevis]
 gi|213626961|gb|AAI70480.1| XFD-12' protein [Xenopus laevis]
          Length = 353

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 274 SPISSPSSTTTDS-NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGW 332
           SP +SP      +  KPPYSY+ALI MAI  + HK+ TL+ I ++I+ KFPY++     W
Sbjct: 82  SPATSPGGKAKRALVKPPYSYIALITMAILQSPHKKLTLSGICDFISSKFPYYKDKFPAW 141

Query: 333 QNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENG 375
           QNSIRHNLSLNDCF+K+ +E     KGNYWTL    EDMF+NG
Sbjct: 142 QNSIRHNLSLNDCFIKIPREPGNPGKGNYWTLDPASEDMFDNG 184


>gi|148227860|ref|NP_001081683.1| forkhead box protein C1-A [Xenopus laevis]
 gi|82248251|sp|Q9PVZ3.1|FXC1A_XENLA RecName: Full=Forkhead box protein C1-A; Short=FoxC1; AltName:
           Full=Fork head domain-related protein 11; Short=XFD-11
 gi|5042343|emb|CAB44727.1| XFD-11 protein [Xenopus laevis]
 gi|213626829|gb|AAI70201.1| Winged helix transcription factor XFD-11 [Xenopus laevis]
          Length = 492

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 69  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRDNKQGWQNSIR 128

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 168


>gi|403310668|ref|NP_599165.1| forkhead box protein C1 [Rattus norvegicus]
          Length = 553

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|213623772|gb|AAI70199.1| Winged helix transcription factor XFD-11 [Xenopus laevis]
          Length = 492

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 69  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRDNKQGWQNSIR 128

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 168


>gi|328702576|ref|XP_001943076.2| PREDICTED: forkhead box protein I1-B-like [Acyrthosiphon pisum]
          Length = 403

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 69/93 (74%), Gaps = 7/93 (7%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI +  ++R TL+EIYNYI  KFPY+ +N++GWQNSIRHNLSLNDCF+
Sbjct: 134 KPPYSYIALIAMAITSTPNQRMTLSEIYNYITDKFPYYRRNRQGWQNSIRHNLSLNDCFI 193

Query: 348 KVAK------EGAGERKGNYWTL-ATKHEDMFE 373
           K+ +      +  G  KG+YWTL      DMFE
Sbjct: 194 KIPRGRTGMDDNMGGGKGSYWTLDPVAAADMFE 226


>gi|297289905|ref|XP_001119000.2| PREDICTED: forkhead box protein C1 [Macaca mulatta]
          Length = 444

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|196009069|ref|XP_002114400.1| hypothetical protein TRIADDRAFT_28100 [Trichoplax adhaerens]
 gi|190583419|gb|EDV23490.1| hypothetical protein TRIADDRAFT_28100 [Trichoplax adhaerens]
          Length = 128

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 3/125 (2%)

Query: 263 DESSSTSIKVSSPISSPSSTTTDS--NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAV 320
           D++ S   K ++ +S    T   S   KPPYSY+ALIAMAI N+ +K+ TL +IY +IA 
Sbjct: 4   DQTVSVKSKGTNQLSQKVKTRRLSRRGKPPYSYIALIAMAIVNSPNKKLTLCDIYQFIAK 63

Query: 321 KFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RR 379
            FPY+  + K WQNSIRHNL+LNDCF+K+ +E     KG+YW L    E MF++G++ RR
Sbjct: 64  HFPYYSLSCKSWQNSIRHNLTLNDCFIKLPRETNQPGKGHYWALDPSSEGMFDSGSFLRR 123

Query: 380 RRRMK 384
           R+R K
Sbjct: 124 RKRFK 128


>gi|194866219|ref|XP_001971815.1| GG15176 [Drosophila erecta]
 gi|190653598|gb|EDV50841.1| GG15176 [Drosophila erecta]
          Length = 364

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 72/98 (73%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 91  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 150

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +        + AG  KG+YW L +   DMFE GNY
Sbjct: 151 KIPRDKNTIEDNDSAG--KGSYWMLDSSASDMFEQGNY 186


>gi|57113909|ref|NP_001009014.1| forkhead box D4-like 4 [Pan troglodytes]
 gi|34451558|gb|AAQ72343.1| FOXD4 [Pan troglodytes]
          Length = 413

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S  S K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 76  PSDPSEFSTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 135

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSI HNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 136 GRFPYYRRKFPAWQNSIHHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 192


>gi|350396947|ref|XP_003484717.1| PREDICTED: hypothetical protein LOC100740124 [Bombus impatiens]
          Length = 491

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 67  DMVKPPYSYIALIAMAIQNAPDKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 126

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MF+NG+Y
Sbjct: 127 CFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSY 159


>gi|291388746|ref|XP_002710886.1| PREDICTED: forkhead box S1-like [Oryctolagus cuniculus]
          Length = 330

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSLN+
Sbjct: 15  EPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSLNE 74

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     DMFE+G++
Sbjct: 75  CFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|328787799|ref|XP_003251005.1| PREDICTED: hypothetical protein LOC724740 [Apis mellifera]
          Length = 427

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY ALI MAI  +  KR TL  IY YI   FPY+E NK+GWQNSIRHNLSLN CFV
Sbjct: 111 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMRHFPYYENNKQGWQNSIRHNLSLNKCFV 170

Query: 348 KVAKEGAGERKGNYWTLATKHEDMF---ENGNYRRRRRMKRPVRTPSYNAKPYLGDMY 402
           KV +      KGNYW L    ED+F     G  RRR       R  ++     LG +Y
Sbjct: 171 KVPRHYDDPGKGNYWMLDPSSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSVVLGGLY 228


>gi|213626620|gb|AAI69733.1| Winged helix transcription factor XFD-11 [Xenopus laevis]
          Length = 492

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 69  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRDNKQGWQNSIR 128

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 168


>gi|190576683|gb|ACE79149.1| winged helix/forkhead transcription factor FoxAb [Branchiostoma
           floridae]
          Length = 443

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MA+ ++ +K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 150 KPPYSYIALITMAVQSSPNKMVTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 209

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL      MFENG Y RR++
Sbjct: 210 KVQRTPDRPGKGSYWTLHPNAHSMFENGCYLRRQK 244


>gi|1668708|emb|CAA70438.1| HNF-3 [Branchiostoma floridae]
          Length = 442

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MA+ ++ +K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 149 KPPYSYIALITMAVQSSPNKMVTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 208

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL      MFENG Y RR++
Sbjct: 209 KVQRTPDRPGKGSYWTLHPNAHSMFENGCYLRRQK 243


>gi|148234012|ref|NP_001080937.1| winged helix transcription factor XFD-11 [Xenopus laevis]
 gi|4092785|gb|AAC99469.1| winged helix transcription factor XFD-11 [Xenopus laevis]
          Length = 492

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 69  APQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRDNKQGWQNSIR 128

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 168


>gi|380018220|ref|XP_003693032.1| PREDICTED: uncharacterized protein LOC100870063 [Apis florea]
          Length = 494

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 67  DMVKPPYSYIALIAMAIQNAPDKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 126

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MF+NG+Y
Sbjct: 127 CFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSY 159


>gi|410910372|ref|XP_003968664.1| PREDICTED: hepatocyte nuclear factor 3-beta-like [Takifugu
           rubripes]
          Length = 444

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 155 KPPYSYISLITMAIQQSSSKMLTLNEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 214

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL  +  +MFENG Y RR++
Sbjct: 215 KVARSPDKPGKGSYWTLHPQSGNMFENGCYLRRQK 249


>gi|327291362|ref|XP_003230390.1| PREDICTED: forkhead box protein C2-like [Anolis carolinensis]
          Length = 486

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 72  DLVKPPYSYIALITMAIQNAPEKKVTLNGIYQFIMERFPFYRENKQGWQNSIRHNLSLNE 131

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 132 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 164


>gi|194224790|ref|XP_001917155.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D4-like [Equus
           caballus]
          Length = 444

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 83/144 (57%)

Query: 233 QENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYS 292
           Q +Q  P+  +   +        S S P  D    T  + ++  ++ S       KPPYS
Sbjct: 55  QLHQPGPQGARRGAAVLPRERTESGSGPRDDSEFGTKFRAATGSAAASGDALQPAKPPYS 114

Query: 293 YVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKE 352
           Y+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFVK+ +E
Sbjct: 115 YIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPRE 174

Query: 353 GAGERKGNYWTLATKHEDMFENGN 376
                KGNYW+L    +DMF+NG+
Sbjct: 175 PGHPGKGNYWSLDPASQDMFDNGS 198


>gi|148674052|gb|EDL05999.1| forkhead-like 18 (Drosophila) [Mus musculus]
          Length = 354

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 70/95 (73%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           + +  KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSL
Sbjct: 38  SAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSL 97

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           N+CFVKV ++     KG+YWTL     DMF++G++
Sbjct: 98  NECFVKVPRDDRKPGKGSYWTLDPDCHDMFQHGSF 132


>gi|260836329|ref|XP_002613158.1| hypothetical protein BRAFLDRAFT_120252 [Branchiostoma floridae]
 gi|229298543|gb|EEN69167.1| hypothetical protein BRAFLDRAFT_120252 [Branchiostoma floridae]
          Length = 482

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MA+ ++ +K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 150 KPPYSYIALITMAVQSSPNKMVTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 209

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL      MFENG Y RR++
Sbjct: 210 KVQRTPDRPGKGSYWTLHPNAHSMFENGCYLRRQK 244


>gi|47497986|ref|NP_998857.1| forkhead box protein C2 [Xenopus (Silurana) tropicalis]
 gi|45709775|gb|AAH67916.1| forkhead box C2 (MFH-1, mesenchyme forkhead 1) [Xenopus (Silurana)
           tropicalis]
 gi|89269875|emb|CAJ83766.1| forkhead box C2 (MFH-1, mesenchyme forkhead 1) [Xenopus (Silurana)
           tropicalis]
          Length = 463

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 68  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 127

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 160


>gi|148236087|ref|NP_001081836.1| forkhead box protein B1 [Xenopus laevis]
 gi|82228188|sp|O93529.1|FOXB1_XENLA RecName: Full=Forkhead box protein B1; Short=FoxB1; AltName:
           Full=Transcription factor FKH-5
 gi|3695057|gb|AAC62623.1| forkhead-domain-containing protein 5 [Xenopus laevis]
 gi|115528660|gb|AAI24884.1| Fkh-5 protein [Xenopus laevis]
          Length = 319

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 70/104 (67%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI  ++ K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQGSQEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L  +  DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPRCGDMFENGSFLRRRK 107


>gi|115502200|sp|Q6NVT7.2|FOXC2_XENTR RecName: Full=Forkhead box protein C2; Short=FoxC2
          Length = 464

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|110758357|ref|XP_001121752.1| PREDICTED: hypothetical protein LOC725966 [Apis mellifera]
          Length = 495

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 67  DMVKPPYSYIALIAMAIQNAPDKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 126

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MF+NG+Y
Sbjct: 127 CFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSY 159


>gi|426366554|ref|XP_004050318.1| PREDICTED: forkhead box protein I2 [Gorilla gorilla gorilla]
          Length = 318

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|426222275|ref|XP_004005322.1| PREDICTED: forkhead box protein E1, partial [Ovis aries]
          Length = 318

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 21  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 80

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 81  LKIPREAGRPGKGNYWALDPNAEDMFESGS 110


>gi|62858379|ref|NP_001016928.1| forkhead box protein D5 [Xenopus (Silurana) tropicalis]
 gi|89269572|emb|CAJ81989.1| novel protein similar to forkhead box L1 [Xenopus (Silurana)
           tropicalis]
          Length = 352

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I+ KFPY++     WQNSIRHNLSLNDCF+
Sbjct: 97  KPPYSYIALITMAILQSPHKKLTLSGICDFISSKFPYYKDKFPAWQNSIRHNLSLNDCFI 156

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL    EDMF+NG+
Sbjct: 157 KIPREPGNPGKGNYWTLDPASEDMFDNGS 185


>gi|259013261|ref|NP_001158436.1| forkhead box E1 [Saccoglossus kowalevskii]
 gi|197320545|gb|ACH68434.1| forkhead box E protein [Saccoglossus kowalevskii]
          Length = 433

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 9/168 (5%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAM+I N+  ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 85  GKPPYSYIALIAMSIANSPERKLTLGGIYKFIMDRFPFYRDNSKKWQNSIRHNLTLNDCF 144

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR---PVRTPSYNAKPYLGDMYA 403
           VK+ +E     KG+YWTL    EDMF+NG++ RRR+  +   P      N   Y+ D   
Sbjct: 145 VKLPREPGRPGKGHYWTLDPAAEDMFDNGSFLRRRKRFKRSDPTEGGYLNGHGYIQDSAF 204

Query: 404 HQNLIGRDIFSAT--ASPFSSRNTWSGPSPNN----VYYPSCVRALPP 445
                GR  + A    + +S +NT   P  ++     +YP+   A PP
Sbjct: 205 TPTATGRAHYQAMYGQTLYSQQNTAYTPGTHHPAMLSHYPTTATAHPP 252


>gi|6679839|ref|NP_032619.1| forkhead box protein D2 [Mus musculus]
 gi|47605575|sp|O35392.1|FOXD2_MOUSE RecName: Full=Forkhead box protein D2; AltName:
           Full=Mesoderm/mesenchyme forkhead 2; Short=MF-2
 gi|2547222|gb|AAB81275.1| forkhead 2 [Mus musculus]
          Length = 492

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 129 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 188

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 189 KIPREPGNPGKGNYWTLDPESADMFDNGS 217


>gi|410032916|ref|XP_003954417.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D2 [Pan
           troglodytes]
          Length = 493

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 69/97 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           ++T +   KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHN
Sbjct: 119 AATRSPLXKPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHN 178

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           LSLNDCFVK+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 179 LSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGS 215


>gi|340716210|ref|XP_003396593.1| PREDICTED: hypothetical protein LOC100648711 [Bombus terrestris]
          Length = 491

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 67  DMVKPPYSYIALIAMAIQNAPDKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 126

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MF+NG+Y
Sbjct: 127 CFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSY 159


>gi|301614509|ref|XP_002936729.1| PREDICTED: forkhead box protein E1 [Xenopus (Silurana) tropicalis]
          Length = 377

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI N+  ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 65  GKPPYSYIALIAMAIANSTDRKLTLGGIYKFITERFPFYRDNSKKWQNSIRHNLTLNDCF 124

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           +K+ +E     KGNYW L    EDMF++G
Sbjct: 125 IKIPREPGRPGKGNYWALDPNAEDMFDSG 153


>gi|165979113|gb|ABY77002.1| FoxC1/2 [Petromyzon marinus]
          Length = 168

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 71/106 (66%)

Query: 274 SPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQ 333
            P S P     D  KPPYSY+ALI MAI +   K+ TL  IY +I  KFP++  NK+GWQ
Sbjct: 63  GPYSHPHQAPKDLVKPPYSYIALITMAIQSAPDKKVTLNGIYQFIMDKFPFYRGNKQGWQ 122

Query: 334 NSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRR 379
           NSIRHNLSLN+CFVKV ++     KG+YW+L     +MFENG++ R
Sbjct: 123 NSIRHNLSLNECFVKVPRDDKKPGKGSYWSLDPDSYNMFENGSFLR 168


>gi|379772239|gb|AFD18724.1| forkhead box L2, partial [Cichlasoma dimerus]
          Length = 69

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/69 (78%), Positives = 59/69 (85%)

Query: 314 IYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFE 373
           IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV +EG GERKGNYWTL    EDMFE
Sbjct: 1   IYQYIISKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFE 60

Query: 374 NGNYRRRRR 382
            GNYRRRRR
Sbjct: 61  KGNYRRRRR 69


>gi|157819329|ref|NP_001102819.1| forkhead box protein I3 [Rattus norvegicus]
 gi|149036363|gb|EDL90981.1| rCG56131 [Rattus norvegicus]
          Length = 400

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 131 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADNFPFYQRSKAGWQNSIRHNLSLNDCFK 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 191 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 220


>gi|126334843|ref|XP_001373972.1| PREDICTED: forkhead box protein D4-like [Monodelphis domestica]
          Length = 400

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 109 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 168

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 169 KIPREPGHPGKGNYWSLDPASQDMFDNGS 197


>gi|75571012|sp|Q5WM45.1|FOXD5_XENTR RecName: Full=Forkhead box protein D5; Short=FoxD5; AltName:
           Full=XtFoxD5
 gi|54400057|emb|CAH64539.1| Fox protein [Xenopus (Silurana) tropicalis]
          Length = 352

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I+ KFPY++     WQNSIRHNLSLNDCF+
Sbjct: 97  KPPYSYIALITMAILQSPHKKLTLSGICDFISSKFPYYKDKFPAWQNSIRHNLSLNDCFI 156

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL    EDMF+NG+
Sbjct: 157 KIPREPGNPGKGNYWTLDPASEDMFDNGS 185


>gi|242129235|gb|ACS83750.1| forkhead box C1 [Homo sapiens]
          Length = 555

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|194224279|ref|XP_001498351.2| PREDICTED: forkhead box protein S1-like [Equus caballus]
          Length = 330

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 68/91 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSLN+CF
Sbjct: 17  TKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSLNECF 76

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           VKV ++     KG+YWTL     DMFE+G++
Sbjct: 77  VKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|119395716|ref|NP_001444.2| forkhead box protein C1 [Homo sapiens]
 gi|13638267|sp|Q12948.3|FOXC1_HUMAN RecName: Full=Forkhead box protein C1; AltName:
           Full=Forkhead-related protein FKHL7; AltName:
           Full=Forkhead-related transcription factor 3;
           Short=FREAC-3
 gi|119575478|gb|EAW55074.1| forkhead box C1 [Homo sapiens]
          Length = 553

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|238054015|ref|NP_001153928.1| forkhead box E1 [Oryzias latipes]
 gi|226441721|gb|ACO57463.1| forkhead box E1 [Oryzias latipes]
          Length = 361

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 65/90 (72%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALI+MAI N+  ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 41  GKPPYSYIALISMAIANSPDRKLTLGGIYKFITERFPFYRDNSKKWQNSIRHNLTLNDCF 100

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 101 IKIPREPGRPGKGNYWALDPNAEDMFESGS 130


>gi|448444|prf||1917213A MFH-1 protein
          Length = 461

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 35  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 94

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 95  CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 127


>gi|158634540|gb|ABW76120.1| FoxD-A [Petromyzon marinus]
          Length = 355

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+ I ++I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 207 KPPYSYIALITMAILQSPQKRLTLSGICDFISARFPYYREKFPAWQNSIRHNLSLNDCFV 266

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL    EDMF+NG+
Sbjct: 267 KIPREPGNPGKGNYWTLDPASEDMFDNGS 295


>gi|194747259|ref|XP_001956070.1| GF25022 [Drosophila ananassae]
 gi|190623352|gb|EDV38876.1| GF25022 [Drosophila ananassae]
          Length = 371

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 91  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 150

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           KV +        + AG  KG+YW L +   DMFE GNY
Sbjct: 151 KVPRDKNTIEDNDSAG--KGSYWMLDSSASDMFEQGNY 186


>gi|195947376|ref|NP_997309.2| forkhead box protein I2 [Homo sapiens]
 gi|182705226|sp|Q6ZQN5.2|FOXI2_HUMAN RecName: Full=Forkhead box protein I2
          Length = 318

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 102 RPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 161

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 162 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 191


>gi|340712557|ref|XP_003394823.1| PREDICTED: fork head domain transcription factor slp1-like [Bombus
           terrestris]
          Length = 426

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY ALI MAI  +  KR TL  IY YI   FPY+E NK+GWQNSIRHNLSLN CFV
Sbjct: 109 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMRHFPYYENNKQGWQNSIRHNLSLNKCFV 168

Query: 348 KVAKEGAGERKGNYWTLATKHEDMF---ENGNYRRRRRMKRPVRTPSYNAKPYLGDMY 402
           KV +      KGNYW L    ED+F     G  RRR       R  ++     LG +Y
Sbjct: 169 KVPRHYDDPGKGNYWMLDPSSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSVVLGGLY 226


>gi|359068158|ref|XP_003586437.1| PREDICTED: forkhead box protein D4-like 1-like, partial [Bos
           taurus]
          Length = 357

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 71/107 (66%)

Query: 270 IKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNK 329
             VS+  ++ S       KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +  
Sbjct: 90  FGVSTGSAAASRDAPQPAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKF 149

Query: 330 KGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
             WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 150 PAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|147907361|ref|NP_001081998.1| forkhead box protein D5-A [Xenopus laevis]
 gi|82248063|sp|Q9PRJ8.1|FXD5A_XENLA RecName: Full=Forkhead box protein D5-A; Short=FoxD5-A;
           Short=FoxD5a; AltName: Full=Fork head domain-related
           protein 12; Short=xFD-12; AltName: Full=XlFoxD5a
 gi|5713121|gb|AAD47811.1|AF162782_1 winged helix protein [Xenopus laevis]
 gi|5042345|emb|CAB44728.1| XFD-12 protein [Xenopus laevis]
 gi|54400053|emb|CAH64537.1| Fox protein [Xenopus laevis]
 gi|213623374|gb|AAI69658.1| Winged helix protein [Xenopus laevis]
 gi|213625026|gb|AAI69656.1| Winged helix protein [Xenopus laevis]
          Length = 352

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HK+ TL+ I ++I+ KFPY++     WQNSIRHNLSLNDCF+
Sbjct: 97  KPPYSYIALITMAILQSPHKKLTLSGICDFISSKFPYYKDKFPAWQNSIRHNLSLNDCFI 156

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL    EDMF+NG+
Sbjct: 157 KIPREPGNPGKGNYWTLDPASEDMFDNGS 185


>gi|386638|gb|AAB27463.1| mesenchyme fork head 1 [Mus sp.]
          Length = 461

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 35  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 94

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 95  CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 127


>gi|159032068|ref|NP_038547.2| forkhead box protein C2 [Mus musculus]
 gi|3041714|sp|Q61850.2|FOXC2_MOUSE RecName: Full=Forkhead box protein C2; AltName: Full=Brain factor
           3; Short=BF-3; AltName: Full=Forkhead-related protein
           FKHL14; AltName: Full=Mesenchyme fork head protein 1;
           Short=MFH-1 protein; AltName: Full=Transcription factor
           FKH-14
 gi|1835130|emb|CAA52192.1| mesenchyme fork head-1 protein [Mus musculus]
 gi|1869969|emb|CAA69399.1| mesenchyme fork head-1 protein [Mus musculus]
 gi|148679706|gb|EDL11653.1| forkhead box C2 [Mus musculus]
 gi|223459990|gb|AAI39209.1| Forkhead box C2 [Mus musculus]
          Length = 494

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 68  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 127

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 160


>gi|3859930|gb|AAC72915.1| forkhead/winged helix-like transcription factor 7 [Homo sapiens]
          Length = 553

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|3170417|gb|AAC18081.1| transcription factor forkhead-like 7 [Homo sapiens]
          Length = 553

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|402854479|ref|XP_003891896.1| PREDICTED: uncharacterized protein LOC101018619 [Papio anubis]
          Length = 733

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 365 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 424

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 425 KIPREPGNPGKGNYWTLDPESADMFDNGS 453


>gi|345318558|ref|XP_001516678.2| PREDICTED: forkhead box protein D4-like [Ornithorhynchus anatinus]
          Length = 430

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 66/94 (70%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           +    KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSL
Sbjct: 84  SAQQAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSL 143

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           NDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 144 NDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 177


>gi|441593548|ref|XP_003273890.2| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D4 [Nomascus
           leucogenys]
          Length = 403

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 108 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 167

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 168 KIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|20302135|ref|NP_620264.1| forkhead box protein E1 [Rattus norvegicus]
 gi|2105085|emb|CAA72174.1| TTF-2 protein [Rattus norvegicus]
 gi|149045835|gb|EDL98835.1| forkhead box E1 (thyroid transcription factor 2) [Rattus
           norvegicus]
          Length = 370

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 53  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 112

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 113 LKIPREAGRPGKGNYWALDPNAEDMFESGS 142


>gi|328790133|ref|XP_001122142.2| PREDICTED: fork head domain-containing protein FD2-like [Apis
           mellifera]
          Length = 228

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 12/100 (12%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAIN++  +R TL+ IY +I  +FPY+ +N++GWQNSIRHNLSLNDCFV
Sbjct: 39  KPPYSYIALIAMAINSSPKQRLTLSGIYRFIMDRFPYYRENRQGWQNSIRHNLSLNDCFV 98

Query: 348 KV----------AKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+          A++ AG  KG+YWTL     +MFE+GNY
Sbjct: 99  KIPRDKVVGNDNAEDQAG--KGSYWTLDPSASEMFEHGNY 136


>gi|328717523|ref|XP_003246231.1| PREDICTED: hypothetical protein LOC100573926 [Acyrthosiphon pisum]
          Length = 408

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 74/113 (65%), Gaps = 1/113 (0%)

Query: 276 ISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           +  P   T    KPPYSY++L AMAI +   K+  L++IY +I+ +FPY+ KN + WQNS
Sbjct: 1   MPRPCRETYGDQKPPYSYISLTAMAIWSAPEKKLPLSDIYKFISDRFPYYRKNTQRWQNS 60

Query: 336 IRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPV 387
           +RHNLS NDCF+K+ +      KG YWTL     DMFENG++ RRR+R K P 
Sbjct: 61  LRHNLSFNDCFMKIPRRPNQPGKGAYWTLHPHALDMFENGSFLRRRKRFKLPA 113


>gi|322786614|gb|EFZ13009.1| hypothetical protein SINV_12552 [Solenopsis invicta]
          Length = 499

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 66  DMVKPPYSYIALIAMAIQNAPDKKITLNGIYQFIMDRFPYYRENKQGWQNSIRHNLSLNE 125

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MF+NG+Y
Sbjct: 126 CFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSY 158


>gi|195170749|ref|XP_002026174.1| GL16060 [Drosophila persimilis]
 gi|194111054|gb|EDW33097.1| GL16060 [Drosophila persimilis]
          Length = 369

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 70/98 (71%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+  NK+GWQNSIRHNLSLNDCFV
Sbjct: 78  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRDNKQGWQNSIRHNLSLNDCFV 137

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           KV +        + AG  KG+YW L     DMFE GNY
Sbjct: 138 KVPRDKNTIDDNDSAG--KGSYWMLDASASDMFEQGNY 173


>gi|13169436|gb|AAK13574.1| forkhead homolog [Homo sapiens]
          Length = 112

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCF 
Sbjct: 9   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFD 68

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           K+ +E A   KGNYWTL  + EDMF+NG++ RRR+R K
Sbjct: 69  KIPREPATRPKGNYWTLDPQSEDMFDNGSFLRRRKRFK 106


>gi|226441734|gb|ACO57469.1| forkhead box I1, partial [Oryzias latipes]
          Length = 253

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 69/90 (76%), Gaps = 7/90 (7%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI N++ K+ TL++IY Y+A  FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 131 RPPYSYSALIAMAIQNSQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KVA       +GNYWTL    E MF+NGN+
Sbjct: 191 KVA-------RGNYWTLDPNCEKMFDNGNF 213


>gi|109004127|ref|XP_001109731.1| PREDICTED: hypothetical protein LOC710284 [Macaca mulatta]
          Length = 495

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 69/97 (71%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
           ++T +   KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHN
Sbjct: 119 AATRSPLVKPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHN 178

Query: 340 LSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           LSLNDCFVK+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 179 LSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGS 215


>gi|26345294|dbj|BAC36298.1| unnamed protein product [Mus musculus]
          Length = 494

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 68  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 127

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 160


>gi|1199529|emb|CAA63244.1| MFH-1 [Mus musculus]
          Length = 493

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 67  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 126

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 127 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 159


>gi|125976788|ref|XP_001352427.1| GA10915 [Drosophila pseudoobscura pseudoobscura]
 gi|54641173|gb|EAL29923.1| GA10915 [Drosophila pseudoobscura pseudoobscura]
          Length = 377

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 70/98 (71%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+  NK+GWQNSIRHNLSLNDCFV
Sbjct: 86  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRDNKQGWQNSIRHNLSLNDCFV 145

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           KV +        + AG  KG+YW L     DMFE GNY
Sbjct: 146 KVPRDKNTIDDNDSAG--KGSYWMLDASASDMFEQGNY 181


>gi|405949949|gb|EKC17959.1| Forkhead box protein C2 [Crassostrea gigas]
          Length = 500

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P  +  D  KPPYSY+ALIAMAI +   K+ TL  IY +I  +FP++ +NK+GWQNSIR
Sbjct: 75  TPHQSPKDMVKPPYSYIALIAMAIQSQPDKKVTLNGIYQFIMDRFPFYRENKQGWQNSIR 134

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVK+ ++     KG+YW+L     +MF+NG+Y
Sbjct: 135 HNLSLNECFVKIPRDDKKPGKGSYWSLDPDSYNMFDNGSY 174


>gi|45384422|ref|NP_990283.1| forkhead box D2 [Gallus gallus]
 gi|1766073|gb|AAC60064.1| winged helix protein CWH-1 [Gallus gallus]
          Length = 443

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 123 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 182

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 183 KIPREPGNPGKGNYWTLDPESADMFDNGS 211


>gi|388594876|gb|AFK74873.1| transcription factor FoxA2 [Hydra vulgaris]
          Length = 467

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 70/90 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI+MAI ++  K+ TL+ IY +I  +FPY+ +NK+GWQNSIRHNLSLN+CF+
Sbjct: 89  KPPYSYIALISMAIQSSPDKKLTLSGIYQFIMERFPYYRQNKQGWQNSIRHNLSLNECFL 148

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KG+YW+L     +MFENG+Y
Sbjct: 149 KVPRDDNKPGKGSYWSLHPDSMNMFENGSY 178


>gi|221131213|ref|XP_002167983.1| PREDICTED: uncharacterized protein LOC100202271 [Hydra
           magnipapillata]
          Length = 467

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 70/90 (77%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI+MAI ++  K+ TL+ IY +I  +FPY+ +NK+GWQNSIRHNLSLN+CF+
Sbjct: 89  KPPYSYIALISMAIQSSPDKKLTLSGIYQFIMERFPYYRQNKQGWQNSIRHNLSLNECFL 148

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KG+YW+L     +MFENG+Y
Sbjct: 149 KVPRDDNKPGKGSYWSLHPDSMNMFENGSY 178


>gi|156119589|ref|NP_001095150.1| forkhead box protein C2 [Rattus norvegicus]
 gi|149038356|gb|EDL92716.1| rCG51679 [Rattus norvegicus]
          Length = 494

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 68  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 127

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 160


>gi|410923745|ref|XP_003975342.1| PREDICTED: forkhead box C1-A-like [Takifugu rubripes]
          Length = 573

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 70/100 (70%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N+  K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 167 TPQPQPKDMVKPPYSYIALITMAIQNSPDKKVTLNGIYQFIMERFPFYRDNKQGWQNSIR 226

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 227 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 266


>gi|110592132|gb|ABG77529.1| FoxDa [Halocynthia roretzi]
          Length = 456

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 74/112 (66%), Gaps = 8/112 (7%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL EI  +I  KFPY+++    WQNSIRHNLSLNDCF+
Sbjct: 163 KPPYSYIALITMAIVQSPGKKLTLGEICEFIMKKFPYYKERFPAWQNSIRHNLSLNDCFI 222

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY--------RRRRRMKRPVRTPS 391
           KV ++     KGNYWT+  + EDMFENG++        R    ++ P+R P+
Sbjct: 223 KVPRQTGVPGKGNYWTIDPEAEDMFENGSFLRRRKRFRRTTTTIQEPIRHPA 274


>gi|380018481|ref|XP_003693156.1| PREDICTED: forkhead box protein I1-ema-like [Apis florea]
          Length = 263

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 12/100 (12%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAIN++  +R TL+ IY +I  +FPY+ +N++GWQNSIRHNLSLNDCFV
Sbjct: 75  KPPYSYIALIAMAINSSPKQRLTLSGIYRFIMDRFPYYRENRQGWQNSIRHNLSLNDCFV 134

Query: 348 KV----------AKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+          A++ AG  KG+YWTL     +MFE+GNY
Sbjct: 135 KIPRDKVVGNDNAEDQAG--KGSYWTLDPSASEMFEHGNY 172


>gi|345481290|ref|XP_001602513.2| PREDICTED: hypothetical protein LOC100118579 [Nasonia vitripennis]
          Length = 424

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 74/126 (58%)

Query: 257 SSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYN 316
            SSP   +SS  S   S   S+  +    S KPPYSY ALI MAI  +  KR TL  IY 
Sbjct: 79  CSSPAGKDSSLGSGAPSKEQSAAEAEKKKSEKPPYSYNALIMMAIRQSPEKRLTLNGIYE 138

Query: 317 YIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           YI   FPY+E NK+GWQNSIRHNLSLN CFVKV +      KGNYW L    ED+F  G 
Sbjct: 139 YIMRNFPYYENNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGT 198

Query: 377 YRRRRR 382
             + RR
Sbjct: 199 TGKLRR 204


>gi|348529526|ref|XP_003452264.1| PREDICTED: forkhead box protein E1-like [Oreochromis niloticus]
          Length = 366

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 65/90 (72%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALI+MAI N+  ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 41  GKPPYSYIALISMAIANSPDRKLTLGGIYKFITERFPFYRDNSKKWQNSIRHNLTLNDCF 100

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 101 IKIPREPGRPGKGNYWALDPNAEDMFESGS 130


>gi|157278036|ref|NP_001098163.1| Me-FKH1 [Oryzias latipes]
 gi|13383191|dbj|BAA23580.2| Me-FKH1 [Oryzias latipes]
          Length = 453

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 150 KPPYSYISLITMAIQQSGSKMLTLNEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 209

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL  +  +MFENG Y RR++
Sbjct: 210 KVARSPDKPGKGSYWTLHPQSGNMFENGCYLRRQK 244


>gi|390457847|ref|XP_003732013.1| PREDICTED: forkhead box protein D4-like [Callithrix jacchus]
          Length = 442

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 71/110 (64%)

Query: 267 STSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFE 326
            T  ++    ++ S       KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ 
Sbjct: 82  GTKFRIPPKYAAASGDAPQPAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYR 141

Query: 327 KNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 142 RKFPAWQNSIRHNLSLNDCFVKIPREPGQPGKGNYWSLDPASQDMFDNGS 191


>gi|405950763|gb|EKC18729.1| Forkhead box protein B1 [Crassostrea gigas]
          Length = 302

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 1/111 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T +  KPPYSY+AL AMAI N+  K   L++IY +I  +FP++ +N + WQNS+RH
Sbjct: 4   PGRNTYNDQKPPYSYIALTAMAIQNSAEKMLPLSDIYKFIMDRFPFYRQNTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVR 388
           NLS NDCF+K+ +      KG+YW L     DMFENG++ RRR+R K   R
Sbjct: 64  NLSFNDCFIKIPRRPDRPGKGSYWALHPMSGDMFENGSFLRRRKRFKMTFR 114


>gi|195125317|ref|XP_002007125.1| GI12553 [Drosophila mojavensis]
 gi|193918734|gb|EDW17601.1| GI12553 [Drosophila mojavensis]
          Length = 349

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 71/98 (72%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 79  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 138

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           KV +        + AG  KG+YW L     DMFE GNY
Sbjct: 139 KVPRDKNTIEDNDSAG--KGSYWMLDASATDMFEQGNY 174


>gi|296231742|ref|XP_002761282.1| PREDICTED: forkhead box protein C2 [Callithrix jacchus]
          Length = 501

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|344292314|ref|XP_003417873.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein C1-like
           [Loxodonta africana]
          Length = 552

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 69  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 128

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 168


>gi|109477031|ref|XP_001069350.1| PREDICTED: forkhead box protein D2 [Rattus norvegicus]
          Length = 459

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 96  KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 155

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 156 KIPREPGNPGKGNYWTLDPESADMFDNGS 184


>gi|395856865|ref|XP_003800838.1| PREDICTED: forkhead box protein C2 [Otolemur garnettii]
          Length = 498

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|296478046|tpg|DAA20161.1| TPA: forkhead box C2 (MFH-1, mesenchyme forkhead 1) [Bos taurus]
          Length = 502

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|348520923|ref|XP_003447976.1| PREDICTED: forkhead box protein D3-A-like [Oreochromis niloticus]
          Length = 309

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 75/123 (60%)

Query: 254 QPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAE 313
           +PSS SP         +++  P          S KPPYSY+ALI MAI  +  KR TL+E
Sbjct: 43  RPSSFSPGVQGEDDFEVRLQDPAVEGPGRRITSVKPPYSYIALITMAILQSPKKRLTLSE 102

Query: 314 IYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFE 373
           I ++I+ +F Y+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYWTL     DMFE
Sbjct: 103 ICDFISQRFVYYREKFPSWQNSIRHNLSLNDCFVKMPREPGNPGKGNYWTLDPMSADMFE 162

Query: 374 NGN 376
           NG+
Sbjct: 163 NGS 165


>gi|392348225|ref|XP_233422.4| PREDICTED: forkhead box protein D2 [Rattus norvegicus]
          Length = 494

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 131 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 191 KIPREPGNPGKGNYWTLDPESADMFDNGS 219


>gi|300796545|ref|NP_001180001.1| forkhead box protein C2 [Bos taurus]
          Length = 502

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|195491571|ref|XP_002093618.1| GE21395 [Drosophila yakuba]
 gi|194179719|gb|EDW93330.1| GE21395 [Drosophila yakuba]
          Length = 362

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 72/98 (73%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 91  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 150

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +        + AG  KG+YW L +   DMFE GNY
Sbjct: 151 KIPRDKNTIEDNDSAG--KGSYWMLDSSASDMFEQGNY 186


>gi|431894275|gb|ELK04075.1| Forkhead box protein S1 [Pteropus alecto]
          Length = 330

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 68/91 (74%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI ++  +RATL+ IY YI  +F ++  N+ GWQNSIRHNLSLN+CF
Sbjct: 17  TKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSLNECF 76

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           VKV ++     KG+YWTL     DMFE+G++
Sbjct: 77  VKVPRDDRKPGKGSYWTLDPDCHDMFEHGSF 107


>gi|336174369|dbj|BAK40074.1| folkhead transcription factor FoxA3 [Takifugu niphobles]
          Length = 461

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 155 KPPYSYISLITMAIQQSGSKMLTLNEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 214

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL  +  +MFENG Y RR++
Sbjct: 215 KVARSPDKPGKGSYWTLHPQSGNMFENGCYLRRQK 249


>gi|25137515|dbj|BAC24088.1| fork head [Achaearanea tepidariorum]
          Length = 406

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N+  K  TL EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 107 KPPYSYISLITMAIQNSPQKMLTLNEIYQFIVDIFPFYRQNQQRWQNSIRHSLSFNDCFV 166

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG++W L  +  DMFENG + RR++
Sbjct: 167 KVARTPDKPGKGSFWALHPESGDMFENGCFLRRQK 201


>gi|307182154|gb|EFN69497.1| Fork head domain-containing protein FD2 [Camponotus floridanus]
          Length = 164

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 78/122 (63%), Gaps = 16/122 (13%)

Query: 272 VSSPISSPSSTTTDS---------NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKF 322
           VS P+   SS  T +          KPPYSY+ALIAMAIN++  +R TL+ IY +I  KF
Sbjct: 20  VSGPVLCQSSRPTSAIISYKTPHYEKPPYSYIALIAMAINSSLKRRLTLSGIYQFIMDKF 79

Query: 323 PYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGER-------KGNYWTLATKHEDMFENG 375
           PY+ +N++GWQNSIRHNLSLNDCFVK+ +    +        KG+YWTL     +MFE G
Sbjct: 80  PYYRENRQGWQNSIRHNLSLNDCFVKIPRNKTVDHDDDHTIGKGSYWTLDPSVSEMFEYG 139

Query: 376 NY 377
           NY
Sbjct: 140 NY 141


>gi|350396988|ref|XP_003484730.1| PREDICTED: forkhead box protein I1-ema-like [Bombus impatiens]
          Length = 250

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 73/98 (74%), Gaps = 8/98 (8%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAIN++  +R TL+ IY +I  +FPY+ +N++GWQNSIRHNLSLNDCFV
Sbjct: 75  KPPYSYIALIAMAINSSPKQRLTLSGIYRFIMDRFPYYRENRQGWQNSIRHNLSLNDCFV 134

Query: 348 KVAKEGA-----GE---RKGNYWTLATKHEDMFENGNY 377
           K+ ++       GE    KG+YWTL     +MFE+GNY
Sbjct: 135 KIPRDKVIGNDNGEDQAGKGSYWTLDPSASEMFEHGNY 172


>gi|410035599|ref|XP_003949933.1| PREDICTED: forkhead box protein D4-like 1 [Pan troglodytes]
          Length = 411

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  + HKR TL+ I  +I+
Sbjct: 76  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQSPHKRLTLSGICAFIS 135

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 136 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 192


>gi|327263114|ref|XP_003216366.1| PREDICTED: forkhead box protein D1-like [Anolis carolinensis]
          Length = 338

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 66/90 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 58  KPPYSYIALITMAILQSAKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 117

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +E     KGNYWTL  +  DMF+NG++
Sbjct: 118 KIPREPGNPGKGNYWTLDPESADMFDNGSF 147


>gi|167560887|ref|NP_001107970.1| forkhead box B1 [Xenopus (Silurana) tropicalis]
 gi|166796519|gb|AAI59041.1| foxb1 protein [Xenopus (Silurana) tropicalis]
          Length = 322

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 70/104 (67%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI +++ K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSQEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|332246836|ref|XP_003272561.1| PREDICTED: forkhead box protein C2 [Nomascus leucogenys]
          Length = 312

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|395510505|ref|XP_003759515.1| PREDICTED: uncharacterized protein LOC100919040 [Sarcophilus
           harrisii]
          Length = 583

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 66/90 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 134 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 193

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +E     KGNYWTL  +  DMF+NG++
Sbjct: 194 KIPREPGNPGKGNYWTLDPESADMFDNGSF 223


>gi|322791237|gb|EFZ15766.1| hypothetical protein SINV_11639 [Solenopsis invicta]
          Length = 502

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N  HK  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 146 KPPYSYISLITMAIQNAPHKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 205

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG++WTL     +MFENG Y RR++
Sbjct: 206 KVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 240


>gi|334326044|ref|XP_001378806.2| PREDICTED: forkhead box protein C1 [Monodelphis domestica]
          Length = 579

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 67  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 126

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 127 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 166


>gi|563166|gb|AAA92040.1| FREAC-5, partial [Homo sapiens]
          Length = 106

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 1/99 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP SY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 6   KPPSSYIALITMAILQSPHKRLTLSGICAFISDRFPYYRRKFPAWQNSIRHNLSLNDCFV 65

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKR 385
           K+ +E     KGNYW+L    +DMF+NG++ RRR+R +R
Sbjct: 66  KIPREPGRPGKGNYWSLDPASQDMFDNGSFLRRRKRFQR 104


>gi|395740525|ref|XP_003777432.1| PREDICTED: forkhead box protein D4-like [Pongo abelii]
          Length = 444

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  + HKR TL+ I  +I+
Sbjct: 79  PSDPSEFGTKFRAPPRSAAASEDAQQPAKPPYSYIALITMAILQSPHKRLTLSGICAFIS 138

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 139 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 195


>gi|134152688|ref|NP_001077066.1| forkhead box protein C2 [Equus caballus]
 gi|87245345|gb|ABD34840.1| forkhead box protein C2 [Equus caballus]
          Length = 502

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|34451545|gb|AAQ72337.1| FOXD4 [Pongo pygmaeus]
          Length = 444

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  + HKR TL+ I  +I+
Sbjct: 79  PSDPSEFGTKFRAPPRSAAASEDAQQPAKPPYSYIALITMAILQSPHKRLTLSGICAFIS 138

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 139 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 195


>gi|34304111|ref|NP_899121.1| forkhead box protein E1 [Mus musculus]
 gi|47605715|sp|Q8R2I0.2|FOXE1_MOUSE RecName: Full=Forkhead box protein E1; AltName: Full=Thyroid
           transcription factor 2; Short=TTF-2
 gi|32187844|emb|CAD29716.2| forkhead box E1 [Mus musculus]
 gi|182888031|gb|AAI60319.1| Forkhead box E1 [synthetic construct]
          Length = 371

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 54  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 113

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 114 LKIPREAGRPGKGNYWALDPNAEDMFESGS 143


>gi|284944522|gb|ADC32285.1| FoxA [Schmidtea polychroa]
          Length = 197

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 73/102 (71%), Gaps = 1/102 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N+     TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 49  KPPYSYISLITMAIQNSPVNMCTLSEIYQFIMDHFPYYRQNQQRWQNSIRHSLSFNDCFV 108

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVR 388
           KV++      KG+YWTL  +  +MFENG Y RR++R K P R
Sbjct: 109 KVSRSPEKPGKGSYWTLHPQSGNMFENGCYLRRQKRFKDPHR 150


>gi|307175174|gb|EFN65267.1| Fork head domain-containing protein crocodile [Camponotus
           floridanus]
          Length = 490

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI N   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 67  DMVKPPYSYIALIAMAIQNAPDKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 126

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CF+KV ++     KG+YW+L     +MF+NG+Y
Sbjct: 127 CFIKVPRDDKKPGKGSYWSLDPDSYNMFDNGSY 159


>gi|68354668|ref|XP_696065.1| PREDICTED: forkhead box protein E1 [Danio rerio]
          Length = 354

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 65/90 (72%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALI+MAI N+  ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 39  GKPPYSYIALISMAIANSPDRKLTLGGIYKFITERFPFYRDNSKKWQNSIRHNLTLNDCF 98

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 99  IKIPREPGRPGKGNYWALDPNAEDMFESGS 128


>gi|340716556|ref|XP_003396763.1| PREDICTED: forkhead box protein I1-like [Bombus terrestris]
          Length = 250

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 73/98 (74%), Gaps = 8/98 (8%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAIN++  +R TL+ IY +I  +FPY+ +N++GWQNSIRHNLSLNDCFV
Sbjct: 75  KPPYSYIALIAMAINSSPKQRLTLSGIYRFIMDRFPYYRENRQGWQNSIRHNLSLNDCFV 134

Query: 348 KVAKEGA-----GE---RKGNYWTLATKHEDMFENGNY 377
           K+ ++       GE    KG+YWTL     +MFE+GNY
Sbjct: 135 KIPRDKVIGNDNGEDQAGKGSYWTLDPSASEMFEHGNY 172


>gi|410955310|ref|XP_003984299.1| PREDICTED: forkhead box protein I3 [Felis catus]
          Length = 525

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 281 STTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNL 340
           S+ TDS +   SY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNL
Sbjct: 246 SSVTDSFRD--SYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNL 303

Query: 341 SLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           SLNDCF KV ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 304 SLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 347


>gi|34451547|gb|AAQ72338.1| FOXD4 [Pongo pygmaeus]
          Length = 444

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  + HKR TL+ I  +I+
Sbjct: 79  PSDPSEFGTKFRAPPRSAAASEDAQQPAKPPYSYIALITMAILQSPHKRLTLSGICAFIS 138

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 139 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 195


>gi|395748185|ref|XP_003778723.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein C2 [Pongo
           abelii]
          Length = 501

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|301603611|ref|XP_002931458.1| PREDICTED: forkhead box protein D2-like [Xenopus (Silurana)
           tropicalis]
          Length = 348

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 64/88 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 78  KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 137

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           K+ +E     KGNYWTL  +  DMF+NG
Sbjct: 138 KIPREPGNPGKGNYWTLDPESADMFDNG 165


>gi|208431706|ref|NP_001094934.1| forkhead box protein I3 [Mus musculus]
 gi|148666513|gb|EDK98929.1| mCG127283 [Mus musculus]
          Length = 399

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF 
Sbjct: 129 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADNFPFYQRSKAGWQNSIRHNLSLNDCFK 188

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 189 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 218


>gi|4885237|ref|NP_005242.1| forkhead box protein C2 [Homo sapiens]
 gi|3024149|sp|Q99958.1|FOXC2_HUMAN RecName: Full=Forkhead box protein C2; AltName:
           Full=Forkhead-related protein FKHL14; AltName:
           Full=Mesenchyme fork head protein 1; Short=MFH-1
           protein; AltName: Full=Transcription factor FKH-14
 gi|1869805|emb|CAA69400.1| Mesenchyme Fork Head-1 [Homo sapiens]
 gi|94963117|gb|AAI11590.1| FOXC2 protein [synthetic construct]
 gi|109731037|gb|AAI13440.1| Forkhead box C2 (MFH-1, mesenchyme forkhead 1) [Homo sapiens]
 gi|109731690|gb|AAI13438.1| Forkhead box C2 (MFH-1, mesenchyme forkhead 1) [Homo sapiens]
 gi|242129237|gb|ACS83751.1| forkhead box C2 (MFH-1, mesenchyme forkhead 1) [Homo sapiens]
          Length = 501

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|17975526|ref|NP_523912.1| forkhead domain 64A, isoform A [Drosophila melanogaster]
 gi|386770532|ref|NP_001246609.1| forkhead domain 64A, isoform B [Drosophila melanogaster]
 gi|13124729|sp|Q02360.2|FD2_DROME RecName: Full=Fork head domain-containing protein FD2
 gi|7292417|gb|AAF47821.1| forkhead domain 64A, isoform A [Drosophila melanogaster]
 gi|289666817|gb|ADD16463.1| RT06062p [Drosophila melanogaster]
 gi|383291739|gb|AFH04280.1| forkhead domain 64A, isoform B [Drosophila melanogaster]
          Length = 365

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 72/98 (73%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 91  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 150

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +        + AG  KG+YW L +   DMFE GNY
Sbjct: 151 KIPRDKNTIEDNDSAG--KGSYWMLDSSASDMFEQGNY 186


>gi|109110870|ref|XP_001114004.1| PREDICTED: forkhead box protein E1-like [Macaca mulatta]
          Length = 372

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 52  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 111

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    E+MFE+G+
Sbjct: 112 LKIPREAGRPGKGNYWALDPNAEEMFESGS 141


>gi|297665005|ref|XP_002810902.1| PREDICTED: forkhead box protein D2 [Pongo abelii]
          Length = 493

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 127 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 186

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 187 KIPREPGNPGKGNYWTLDPESADMFDNGS 215


>gi|431891052|gb|ELK01930.1| Forkhead box protein C1 [Pteropus alecto]
          Length = 513

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 29  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 88

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 89  HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 128


>gi|410297078|gb|JAA27139.1| forkhead box C2 (MFH-1, mesenchyme forkhead 1) [Pan troglodytes]
          Length = 501

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|339250284|ref|XP_003374127.1| forkhead box protein D3 [Trichinella spiralis]
 gi|316969631|gb|EFV53694.1| forkhead box protein D3 [Trichinella spiralis]
          Length = 284

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 65/98 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P      S KPPYSY+ALI MAI N+  K+ TL+ I  +I  +FPY+ +    WQNSIRH
Sbjct: 30  PDRRKASSVKPPYSYIALITMAILNSPEKKLTLSRICEFIMNRFPYYREKFPAWQNSIRH 89

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           NLSLNDCFVKV +E     KGNYW L    EDMF+NG+
Sbjct: 90  NLSLNDCFVKVPREPGNPGKGNYWALDPASEDMFDNGS 127


>gi|431898662|gb|ELK07042.1| Forkhead box protein D4-like 1 [Pteropus alecto]
          Length = 416

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 65/90 (72%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCF
Sbjct: 110 GKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCF 169

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           VK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 170 VKIPREPGHPGKGNYWSLDPASQDMFDNGS 199


>gi|443717659|gb|ELU08626.1| hypothetical protein CAPTEDRAFT_169665 [Capitella teleta]
          Length = 357

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 72/101 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N+ +K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 23  KPPYSYISLITMAIQNSPNKMCTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 82

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVR 388
           KV +      KG+YWTL     +MFENG Y RR++  + ++
Sbjct: 83  KVPRSPDRPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCIK 123


>gi|341874528|gb|EGT30463.1| hypothetical protein CAEBREN_06289 [Caenorhabditis brenneri]
          Length = 277

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 108/211 (51%), Gaps = 36/211 (17%)

Query: 189 FADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKP----------DPQENQTT 238
           F+ LD+ PD         ++  + + +Q +L   S++Q + P          D  +  + 
Sbjct: 4   FSILDLCPD---------LVEKAVKAQQSLLPTQSSIQLQAPKDISDPCTSIDSTDTMSI 54

Query: 239 PRNKKT------KVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYS 292
           P N          +  + S S  S  S  P  +SS   K SSP          ++KPP+S
Sbjct: 55  PTNDNNDYLLDESIDDERSESTSSKDSKSPCSNSSEEKKPSSP----------NDKPPFS 104

Query: 293 YVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKE 352
           Y ALI MAI N+  KR TL+ IY+YI   +P++  NK+GWQNSIRHNLSLN CFVKV + 
Sbjct: 105 YNALIMMAIKNSPEKRLTLSGIYDYITTNYPFYRDNKQGWQNSIRHNLSLNKCFVKVPRN 164

Query: 353 GAGERKGNYWTL-ATKHEDMFENGNYRRRRR 382
                KGNYW L AT  +++F  G   + RR
Sbjct: 165 FDDPGKGNYWMLDATCEDEVFIGGATGKLRR 195


>gi|310923326|ref|NP_001185637.1| forkhead box protein C2 [Macaca mulatta]
          Length = 501

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|449282508|gb|EMC89341.1| Forkhead box protein C2, partial [Columba livia]
          Length = 463

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|1766075|gb|AAC60065.1| winged helix protein CWH-2 [Gallus gallus]
          Length = 445

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 36  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 95

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 96  CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 128


>gi|73956861|ref|XP_860948.1| PREDICTED: forkhead box protein C2 isoform 4 [Canis lupus
           familiaris]
          Length = 505

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|402909237|ref|XP_003917329.1| PREDICTED: forkhead box protein C2 [Papio anubis]
          Length = 447

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|402897561|ref|XP_003911821.1| PREDICTED: forkhead box protein D4-like 1-like [Papio anubis]
          Length = 445

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSP--ISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P   ++ S       KPPYSY+ALI MAI  + HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRTAAASGDAPQPAKPPYSYIALITMAILQSPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|340718915|ref|XP_003397907.1| PREDICTED: protein fork head-like [Bombus terrestris]
          Length = 561

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N   K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 205 KPPYSYISLITMAIQNAPSKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 264

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG++WTL  +  +MFENG Y RR++R K
Sbjct: 265 KVARTPDKPGKGSFWTLHPESGNMFENGCYLRRQKRFK 302


>gi|327279416|ref|XP_003224452.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein C1-like
           [Anolis carolinensis]
          Length = 546

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 68/99 (68%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIRH
Sbjct: 68  PQPQPKDLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRDNKQGWQNSIRH 127

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           NLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 NLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 166


>gi|190339466|gb|AAI62383.1| Forkhead box A3 [Danio rerio]
          Length = 441

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  ++ K  TL EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 143 KPPYSYISLITMAIQQSQSKMLTLNEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 202

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YW L     +MFENG Y RR++
Sbjct: 203 KVARSPDKPGKGSYWALHPNSGNMFENGCYLRRQK 237


>gi|348555495|ref|XP_003463559.1| PREDICTED: forkhead box protein B1-like [Cavia porcellus]
          Length = 403

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 2/118 (1%)

Query: 269 SIKVSSP-ISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEK 327
           S+K + P +  P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +
Sbjct: 71  SLKGAKPKMPRPGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRE 130

Query: 328 NKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           N + WQNS+RHNLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 131 NTQRWQNSLRHNLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 188


>gi|345305124|ref|XP_001511921.2| PREDICTED: forkhead box protein I1-B-like [Ornithorhynchus
           anatinus]
          Length = 253

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 76/115 (66%), Gaps = 13/115 (11%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI      + TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQTPSNKVTLSGIYDFIMKKFPYYRSNQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNY---------RRRRRMKRPVRT 389
           KV + EG  + KGNYWT A+  E   D+FENGN+         +R R+ +RP  T
Sbjct: 92  KVPRTEGNEKGKGNYWTFASGCESMLDLFENGNFRRRRRRRNVKRERKGQRPYGT 146


>gi|296189829|ref|XP_002742939.1| PREDICTED: forkhead box protein D4-like [Callithrix jacchus]
          Length = 447

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 71/110 (64%)

Query: 267 STSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFE 326
            T  ++    ++ S       KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ 
Sbjct: 87  GTKFRIPPRYAAASGDAPQPAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYR 146

Query: 327 KNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +    WQNSIRHNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 147 RKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|348551400|ref|XP_003461518.1| PREDICTED: forkhead box protein D2-like [Cavia porcellus]
          Length = 493

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 126 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 185

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 186 KIPREPGNPGKGNYWTLDPESADMFDNGS 214


>gi|344292812|ref|XP_003418119.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein C2-like
           [Loxodonta africana]
          Length = 499

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|301604704|ref|XP_002932017.1| PREDICTED: forkhead box protein C1-B-like [Xenopus (Silurana)
           tropicalis]
          Length = 246

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 71/96 (73%), Gaps = 4/96 (4%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
           N+P YSY+ALIAMAI  +   + TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CF
Sbjct: 31  NRPAYSYIALIAMAIQQSPDSKVTLSGIYDFIMKKFPYYRSNQRAWQNSIRHNLSLNSCF 90

Query: 347 VKVAK-EGAGERKGNYWTLATKHE---DMFENGNYR 378
           VKV + EG  + KGNYW+ A+  E   D+FENGNY+
Sbjct: 91  VKVPRTEGNEKGKGNYWSFASGCESMLDLFENGNYK 126


>gi|297271031|ref|XP_002800177.1| PREDICTED: forkhead box protein D4-like 1-like isoform 1 [Macaca
           mulatta]
          Length = 444

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 107 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 166

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 167 KIPREPGHPGKGNYWSLDPASQDMFDNGS 195


>gi|395858237|ref|XP_003801479.1| PREDICTED: forkhead box protein D2 [Otolemur garnettii]
          Length = 497

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI N   K  TL +IY +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 127 KPPYSYIALITMAIQNTPKKNITLNDIYQFISDRFPYYREKFPAWQNSIRHNLSLNDCFV 186

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 187 KIPREPGNPGKGNYWTLDPESADMFDNGS 215


>gi|18858689|ref|NP_571374.1| hepatocyte nuclear factor 3-gamma [Danio rerio]
 gi|2982341|gb|AAC06362.1| fork head domain protein FKD2 [Danio rerio]
          Length = 441

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  ++ K  TL EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 143 KPPYSYISLITMAIQQSQSKMLTLNEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 202

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YW L     +MFENG Y RR++
Sbjct: 203 KVARSPDKPGKGSYWALHPNSGNMFENGCYLRRQK 237


>gi|238054007|ref|NP_001153924.1| forkhead box D2 [Oryzias latipes]
 gi|226441713|gb|ACO57459.1| forkhead box D2 [Oryzias latipes]
          Length = 340

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI ++I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 76  KPPYSYIALITMAILQSPKKRLTLSEICDFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 135

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 136 KIPREPGNPGKGNYWTLDPESADMFDNGS 164


>gi|194385284|dbj|BAG65019.1| unnamed protein product [Homo sapiens]
          Length = 439

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 137 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 197 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 234


>gi|149062618|gb|EDM13041.1| rCG47215 [Rattus norvegicus]
          Length = 396

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 103 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 162

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 163 KIPREPGHPGKGNYWSLDPASQDMFDNGS 191


>gi|293344686|ref|XP_001078871.2| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D4 [Rattus
           norvegicus]
 gi|293356484|ref|XP_001055972.2| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D4 [Rattus
           norvegicus]
          Length = 432

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 103 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 162

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 163 KIPREPGHPGKGNYWSLDPASQDMFDNGS 191


>gi|195402990|ref|XP_002060079.1| GJ15456 [Drosophila virilis]
 gi|194141877|gb|EDW58290.1| GJ15456 [Drosophila virilis]
          Length = 348

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 71/98 (72%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 85  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 144

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +        + AG  KG+YW L     DMFE GNY
Sbjct: 145 KIPRDKNTIDDNDSAG--KGSYWMLDASATDMFEQGNY 180


>gi|45384084|ref|NP_990469.1| forkhead box protein C2 [Gallus gallus]
 gi|2072324|gb|AAB53749.1| winged helix transcriptional factor MFH-1 [Gallus gallus]
          Length = 468

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|449472218|ref|XP_002196143.2| PREDICTED: forkhead box protein C2 [Taeniopygia guttata]
          Length = 489

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 70  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 129

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 130 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 162


>gi|432100312|gb|ELK29076.1| Forkhead box protein D4 [Myotis davidii]
          Length = 376

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 49  KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 108

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 109 KIPREPGHPGKGNYWSLDPASKDMFDNGS 137


>gi|397500517|ref|XP_003820957.1| PREDICTED: forkhead box protein C2 [Pan paniscus]
          Length = 408

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|332028098|gb|EGI68149.1| Protein fork head [Acromyrmex echinatior]
          Length = 500

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N  HK  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 144 KPPYSYISLITMAIQNAPHKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 203

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG++WTL     +MFENG Y RR++
Sbjct: 204 KVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 238


>gi|417410756|gb|JAA51844.1| Putative forkhead/hnf-3-related transcription factor, partial
           [Desmodus rotundus]
          Length = 445

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 147 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 206

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 207 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 244


>gi|350399880|ref|XP_003485669.1| PREDICTED: fork head domain transcription factor slp2-like [Bombus
           impatiens]
          Length = 376

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY ALI MAI  +  KR TL  IY YI   FPY+E NK+GWQNSIRHNLSLN CFV
Sbjct: 110 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMRHFPYYENNKQGWQNSIRHNLSLNKCFV 169

Query: 348 KVAKEGAGERKGNYWTLATKHEDMF---ENGNYRRRRRMKRPVRTPSYNAKPYLGDMY 402
           KV +      KGNYW L    ED+F     G  RRR       R  ++     LG +Y
Sbjct: 170 KVPRHYDDPGKGNYWMLDPSSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSVVLGGLY 227


>gi|291383330|ref|XP_002708235.1| PREDICTED: FOXD4-like [Oryctolagus cuniculus]
          Length = 452

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 110 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 169

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 170 KIPREPGHPGKGNYWSLDPASQDMFDNGS 198


>gi|126334138|ref|XP_001372714.1| PREDICTED: forkhead box protein E1-like [Monodelphis domestica]
          Length = 435

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 81  GKPPYSYIALIAMAIAHAPDRKLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 140

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 141 IKIPREPGRPGKGNYWALDPNAEDMFESGS 170


>gi|426383158|ref|XP_004058155.1| PREDICTED: forkhead box protein C2 [Gorilla gorilla gorilla]
          Length = 445

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|403306589|ref|XP_003943810.1| PREDICTED: forkhead box protein L1-like [Saimiri boliviensis
           boliviensis]
          Length = 233

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWT A   E   D+FENGNYRRRRR + P R
Sbjct: 92  KVPRTEGHEKGKGNYWTFAGGCESLLDLFENGNYRRRRRRRGPKR 136


>gi|431909874|gb|ELK12976.1| Forkhead box protein E1 [Pteropus alecto]
          Length = 232

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 51  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 110

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 111 LKIPREAGRPGKGNYWALDPNAEDMFESGS 140


>gi|195337287|ref|XP_002035260.1| GM14607 [Drosophila sechellia]
 gi|194128353|gb|EDW50396.1| GM14607 [Drosophila sechellia]
          Length = 368

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 72/98 (73%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 91  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 150

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +        + AG  KG+YW L +   DMFE GNY
Sbjct: 151 KIPRDKNTIEDNDSAG--KGSYWMLDSSASDMFEQGNY 186


>gi|34451556|gb|AAQ72342.1| FOXD4 [Pan troglodytes]
          Length = 417

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSI HNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIHHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|307198940|gb|EFN79692.1| Fork head domain-containing protein FD2 [Harpegnathos saltator]
          Length = 126

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 73/110 (66%), Gaps = 12/110 (10%)

Query: 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHN 339
             TT    KPPYSY+ALIAMAIN+   +R TL+ IY +I  +FPY+ +N++GWQNSIRHN
Sbjct: 8   CKTTPRYEKPPYSYIALIAMAINSTPKRRLTLSGIYRFIMDRFPYYRENRQGWQNSIRHN 67

Query: 340 LSLNDCFVKVAKE------------GAGERKGNYWTLATKHEDMFENGNY 377
           LSLNDCFVK+ ++            G    KG+YWTL     +MFE+GNY
Sbjct: 68  LSLNDCFVKMPRDKTGADNDEEDGRGGSIGKGSYWTLDPSASEMFEHGNY 117


>gi|359320748|ref|XP_003639410.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein E1 [Canis
           lupus familiaris]
          Length = 271

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   +R TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 50  GKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 109

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 110 LKIPREAGRPGKGNYWALDPNAEDMFESGS 139


>gi|196166493|gb|ACG70805.1| forkhead transcrition factor FoxA [Convolutriloba longifissura]
          Length = 659

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 71/95 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N+ ++  TL++IY++I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 157 KPPYSYISLITMAIQNSNNRMVTLSDIYSFIMELFPYYRQNQQRWQNSIRHSLSFNDCFV 216

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG++WTL  +  +MFENG Y RR++
Sbjct: 217 KVPRTPEKPGKGSFWTLHPESGNMFENGCYLRRQK 251


>gi|194038748|ref|XP_001929311.1| PREDICTED: hepatocyte nuclear factor 3-alpha [Sus scrofa]
          Length = 468

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 169 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 228

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 229 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 266


>gi|307557323|gb|ADN52078.1| forkhead-like protein E1 [Macropus eugenii]
          Length = 437

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 82  GKPPYSYIALIAMAIAHAPDRKLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 141

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 142 IKIPREPGRPGKGNYWALDPNAEDMFESGS 171


>gi|193083011|ref|NP_001122339.1| transcription factor protein [Ciona intestinalis]
 gi|70569552|dbj|BAE06433.1| transcription factor protein [Ciona intestinalis]
          Length = 484

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+AL AMAI ++ +K  +L+EIY YI  +FP++  N + WQNS+RHNLS NDCFV
Sbjct: 13  KPPYSYIALTAMAIQSSPNKMMSLSEIYRYIMDRFPFYRNNTQRWQNSLRHNLSFNDCFV 72

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV + G    KG+ W+L     +MFENG++ RRR+R K
Sbjct: 73  KVPRRGDQPGKGSLWSLHPTCGEMFENGSFLRRRKRFK 110


>gi|344278917|ref|XP_003411238.1| PREDICTED: forkhead box protein D2-like [Loxodonta africana]
          Length = 432

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 64  KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 123

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 124 KIPREPGNPGKGNYWTLDPESADMFDNGS 152


>gi|410984245|ref|XP_003998440.1| PREDICTED: forkhead box protein L1-like [Felis catus]
          Length = 221

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 77/105 (73%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPSGRVTLSGIYDFITRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWTLA   E   D+FENGNYRRRRR + P R
Sbjct: 92  KVPRTEGHEKGKGNYWTLAAGCESLLDLFENGNYRRRRRRRGPKR 136


>gi|395508443|ref|XP_003758521.1| PREDICTED: forkhead box protein C2 [Sarcophilus harrisii]
          Length = 372

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 67/93 (72%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIRHNLSLN+
Sbjct: 70  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNE 129

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 130 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 162


>gi|3421459|gb|AAC32225.1| ForkHead 1 [Molgula occulta]
          Length = 568

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ +++HK  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 117 KPPYSYISLITMALQSSQHKMMTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 176

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 177 KVPRSPDKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 214


>gi|46048827|ref|NP_990337.1| forkhead box protein C1 [Gallus gallus]
 gi|3341441|emb|CAA76851.1| winged-helix transcription factor [Gallus gallus]
          Length = 528

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 67/93 (72%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIRHNLSLN+
Sbjct: 36  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNE 95

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 96  CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 128


>gi|3090887|gb|AAC15421.1| forkhead-related transcription factor FREAC-9 [Homo sapiens]
 gi|119627271|gb|EAX06866.1| forkhead box D2 [Homo sapiens]
          Length = 497

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 127 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 186

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 187 KIPREPGNPGKGNYWTLDPESADMFDNGS 215


>gi|309318831|dbj|BAJ23050.1| forkhead transcription factor FoxB [Halocynthia roretzi]
          Length = 579

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+AL AMAI ++  K  +L+EIY YI  +FP++ KN + WQNS+RHNLS NDCF+
Sbjct: 13  KPPYSYIALTAMAIQSSPDKMMSLSEIYKYIMDRFPFYRKNTQRWQNSLRHNLSFNDCFM 72

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNA---KPYLGDMYA 403
           KV +      KG+ WTL      MFENG++ RRR+R K       ++A   +P++ +   
Sbjct: 73  KVPRRADRPGKGSLWTLHPTCGQMFENGSFLRRRKRFKVAGCDEEHDAEFTRPFVSEDSP 132

Query: 404 HQNLIGRDIFSATASPFSSRNTWSGPS 430
           HQ +  R    A  SP ++ + + G S
Sbjct: 133 HQGI--RRYGPAHVSPSAAEHAFLGMS 157


>gi|195587610|ref|XP_002083554.1| GD13797 [Drosophila simulans]
 gi|194195563|gb|EDX09139.1| GD13797 [Drosophila simulans]
          Length = 368

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 72/98 (73%), Gaps = 10/98 (10%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY +I  KFPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 91  KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 150

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +        + AG  KG+YW L +   DMFE GNY
Sbjct: 151 KIPRDKNTIEDNDSAG--KGSYWMLDSSASDMFEQGNY 186


>gi|127799803|gb|AAH80222.2| Foxa protein [Danio rerio]
          Length = 335

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           T    KPPYSY++LI MAI  +  KR TL EIY++I   FPY+ +N++ WQNSIRH+LS 
Sbjct: 76  TLSHAKPPYSYISLICMAIQQSPAKRLTLNEIYDWIRQLFPYYRQNQQRWQNSIRHSLSF 135

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NDCFV+V +      KG+YW L     +MFENG Y RR++R K
Sbjct: 136 NDCFVRVPRSPDSPGKGSYWALHPDSGNMFENGCYMRRQKRFK 178


>gi|440908795|gb|ELR58780.1| Forkhead box protein C2, partial [Bos grunniens mutus]
          Length = 338

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 70  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 129

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 130 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 162


>gi|56118524|ref|NP_001008148.1| forkhead box protein D1 [Xenopus (Silurana) tropicalis]
 gi|82183741|sp|Q6F2E4.1|FOXD1_XENTR RecName: Full=Forkhead box protein D1; Short=FoxD1; AltName:
           Full=Brain factor 2; Short=BF-2
 gi|50300556|gb|AAT73696.1| BF-2 [Xenopus (Silurana) tropicalis]
 gi|51703783|gb|AAH81361.1| forkhead box D1 [Xenopus (Silurana) tropicalis]
          Length = 329

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 68  KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 127

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 128 KIPREPGNPGKGNYWTLDPESADMFDNGS 156


>gi|328788160|ref|XP_394770.4| PREDICTED: protein fork head-like isoform 1 [Apis mellifera]
          Length = 512

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 69/95 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N   K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 148 KPPYSYISLITMAIQNAPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 207

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG++WTL  +  +MFENG Y RR++
Sbjct: 208 KVARTPDKPGKGSFWTLHPESGNMFENGCYLRRQK 242


>gi|358411591|ref|XP_003582066.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D2 [Bos
           taurus]
          Length = 486

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 130 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 190 KIPREPGNPGKGNYWTLDPESADMFDNGS 218


>gi|334332979|ref|XP_001378075.2| PREDICTED: forkhead box protein C2-like [Monodelphis domestica]
          Length = 220

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/109 (57%), Positives = 78/109 (71%), Gaps = 4/109 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPTNRVTLSGIYDFIMKKFPYYRSNQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVRTPSY 392
           KV + EG  + KGNYWT A+  E   D+FENGNYRRRRR +   + P Y
Sbjct: 92  KVPRMEGNEKGKGNYWTFASGCESMLDLFENGNYRRRRRRRNMKKEPKY 140


>gi|126632009|gb|AAI34422.1| FOXC1 protein [Homo sapiens]
          Length = 212

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|417401460|gb|JAA47616.1| Putative forkhead/hnf-3-related transcription factor [Desmodus
           rotundus]
          Length = 468

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 267


>gi|395819172|ref|XP_003782973.1| PREDICTED: forkhead box protein D4-like 1 [Otolemur garnettii]
          Length = 440

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + H+R TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 103 KPPYSYIALITMAILQSPHQRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 162

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 163 KIPREPGHPGKGNYWSLDPASQDMFDNGS 191


>gi|326673690|ref|XP_003199959.1| PREDICTED: forkhead box protein A4-like [Danio rerio]
          Length = 355

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           T    KPPYSY++LI MAI  +  KR TL EIY++I   FPY+ +N++ WQNSIRH+LS 
Sbjct: 96  TLSHAKPPYSYISLICMAIQQSPAKRLTLNEIYDWIRQLFPYYRQNQQRWQNSIRHSLSF 155

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NDCFV+V +      KG+YW L     +MFENG Y RR++R K
Sbjct: 156 NDCFVRVPRSPDSPGKGSYWALHPDSGNMFENGCYMRRQKRFK 198


>gi|297271033|ref|XP_002800178.1| PREDICTED: forkhead box protein D4-like 1-like isoform 2 [Macaca
           mulatta]
          Length = 408

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 107 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 166

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 167 KIPREPGHPGKGNYWSLDPASQDMFDNGS 195


>gi|301774919|ref|XP_002922879.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein C1-like
           [Ailuropoda melanoleuca]
          Length = 380

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 150 TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 209

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 210 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 249


>gi|395504232|ref|XP_003756460.1| PREDICTED: hepatocyte nuclear factor 3-alpha [Sarcophilus harrisii]
          Length = 466

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 167 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 226

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 227 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 264


>gi|194742401|ref|XP_001953691.1| GF17888 [Drosophila ananassae]
 gi|190626728|gb|EDV42252.1| GF17888 [Drosophila ananassae]
          Length = 272

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 70/107 (65%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  +   L+EIY +I  +FPY+ KN + WQNS+RH
Sbjct: 4   PLKMTYGDQKPPYSYISLTAMAIIHSPQRLLPLSEIYRFIMEQFPYYRKNTQKWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR 385
           NLS NDCF+KV +      KG+YWTL     DMFENG+  RRR+  R
Sbjct: 64  NLSFNDCFIKVPRNVTKAGKGSYWTLHPMAFDMFENGSLLRRRKRFR 110


>gi|63102195|gb|AAH95603.1| Forkhead box D3 [Danio rerio]
          Length = 371

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 96  KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 155

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 156 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 184


>gi|134142824|ref|NP_004465.3| forkhead box protein D2 [Homo sapiens]
 gi|182705227|sp|O60548.2|FOXD2_HUMAN RecName: Full=Forkhead box protein D2; AltName:
           Full=Forkhead-related protein FKHL17; AltName:
           Full=Forkhead-related transcription factor 9;
           Short=FREAC-9
          Length = 495

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 127 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 186

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 187 KIPREPGNPGKGNYWTLDPESADMFDNGS 215


>gi|189236010|ref|XP_966372.2| PREDICTED: similar to Fork head domain-containing protein FD2
           [Tribolium castaneum]
          Length = 255

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 7/97 (7%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI++   +R TL+ IY +I   FPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 46  KPPYSYIALIAMAISSAPKERLTLSGIYRFIMDNFPYYRENKQGWQNSIRHNLSLNDCFV 105

Query: 348 KVAKEGAGER-------KGNYWTLATKHEDMFENGNY 377
           KV ++    R       KG+YW L  K  +MFE GNY
Sbjct: 106 KVPRDKVSPRGPEQAGGKGSYWMLDPKAANMFEKGNY 142


>gi|359064225|ref|XP_003585950.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein D2 [Bos
           taurus]
          Length = 486

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 130 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 190 KIPREPGNPGKGNYWTLDPESADMFDNGS 218


>gi|148224166|ref|NP_001089013.1| forkhead box protein E1 [Xenopus laevis]
 gi|82126092|sp|Q5J3Q5.1|FOXE1_XENLA RecName: Full=Forkhead box protein E1; Short=FoxE1
 gi|46198238|gb|AAS82575.1| FoxE1 [Xenopus laevis]
 gi|213625096|gb|AAI69811.1| FoxE5 [Xenopus laevis]
 gi|213626652|gb|AAI69809.1| FoxE5 [Xenopus laevis]
          Length = 379

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 64/89 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAM+I N+  ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 65  GKPPYSYIALIAMSIANSADRKLTLGGIYKFITERFPFYRDNSKKWQNSIRHNLTLNDCF 124

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           +K+ +E     KGNYW L    EDMF++G
Sbjct: 125 IKIPREPGRPGKGNYWALDPNAEDMFDSG 153


>gi|332832022|ref|XP_003312157.1| PREDICTED: forkhead box protein D4-like 3 [Pan troglodytes]
          Length = 417

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  N HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSI HNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIHHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|444731310|gb|ELW71668.1| Forkhead box protein L1 [Tupaia chinensis]
          Length = 316

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 66/93 (70%), Gaps = 4/93 (4%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAKEGAGERKGNYWTLATKHE---DMFENGNY 377
           KV +   G  KGNYWT A   E   D+FENGNY
Sbjct: 92  KVPR-AEGHGKGNYWTFAGGCESLLDLFENGNY 123


>gi|425906021|gb|AFY10807.1| FoxA1 [Isodiametra pulchra]
          Length = 432

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 282 TTTDSN-KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNL 340
           T ++SN KPPYSY++LI MAI N+ +   TL++IY++I   FPY+ ++++ WQNSIRH+L
Sbjct: 122 TVSNSNAKPPYSYISLITMAIQNSPNHMVTLSDIYSFIMDLFPYYRQHQQRWQNSIRHSL 181

Query: 341 SLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           S NDCFVKVA+      KG++WTL     +MFENG Y RR++
Sbjct: 182 SFNDCFVKVARTPEKPGKGSFWTLHPDSGNMFENGCYLRRQK 223


>gi|332246159|ref|XP_003272217.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein C1 [Nomascus
           leucogenys]
          Length = 444

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|221046108|dbj|BAH14731.1| unnamed protein product [Homo sapiens]
          Length = 439

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 137 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 197 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 234


>gi|148226787|ref|NP_001083920.1| forkhead box protein C2-B [Xenopus laevis]
 gi|5824331|emb|CAB54144.1| FD-4' protein [Xenopus laevis]
          Length = 461

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWSLDPDSYNMFENGSF 161


>gi|74096335|ref|NP_001027657.1| forkhead homolog [Ciona intestinalis]
 gi|2196755|gb|AAB61227.1| forkhead homolog [Ciona intestinalis]
          Length = 587

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|284795270|ref|NP_001089960.2| forkhead box protein C2-A [Xenopus laevis]
 gi|82248250|sp|Q9PVY9.1|FXC2A_XENLA RecName: Full=Forkhead box protein C2-A; Short=FoxC2-A;
           Short=FoxC2a; AltName: Full=Fork head domain-related
           protein 4; Short=FD-4; Short=xFD-4; Short=xFD4 A;
           AltName: Full=Forkhead protein 7; Short=FKH-7;
           Short=xFKH7
 gi|5824329|emb|CAB54143.1| FD-4 protein [Xenopus laevis]
          Length = 465

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWSLDPDSYNMFENGSF 161


>gi|402865590|ref|XP_003896998.1| PREDICTED: forkhead box protein C1 [Papio anubis]
          Length = 485

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 167


>gi|410967507|ref|XP_003990260.1| PREDICTED: forkhead box protein D3 [Felis catus]
          Length = 224

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 85/145 (58%), Gaps = 5/145 (3%)

Query: 232 PQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPY 291
           P   +  PR +  K  ++  +SQP          SSTS+  + P    S       KPPY
Sbjct: 6   PHSQEAGPR-RPVKSHRQLPASQPERGVQTGGPESSTSLHSTYPGRGQSRLV----KPPY 60

Query: 292 SYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAK 351
           SY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFVK+ +
Sbjct: 61  SYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPR 120

Query: 352 EGAGERKGNYWTLATKHEDMFENGN 376
           E     KGNYWTL  + EDMF+NG+
Sbjct: 121 EPGNPGKGNYWTLDPQSEDMFDNGS 145


>gi|74096473|ref|NP_001027695.1| FoxB protein [Ciona intestinalis]
 gi|40642809|emb|CAD58964.1| FoxB protein [Ciona intestinalis]
          Length = 475

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+AL AMAI ++ +K  +L+EIY YI  +FP++  N + WQNS+RHNLS NDCFV
Sbjct: 13  KPPYSYIALTAMAIQSSPNKMMSLSEIYRYIMDRFPFYRNNTQRWQNSLRHNLSFNDCFV 72

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV + G    KG+ W+L     +MFENG++ RRR+R K
Sbjct: 73  KVPRRGDQPGKGSLWSLHPTCGEMFENGSFLRRRKRFK 110


>gi|410921438|ref|XP_003974190.1| PREDICTED: forkhead box protein D2-like [Takifugu rubripes]
          Length = 366

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 91  KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 150

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL     DMF+NG+
Sbjct: 151 KIPREPGNPGKGNYWTLDPDSADMFDNGS 179


>gi|158286845|ref|XP_308959.4| AGAP006786-PA [Anopheles gambiae str. PEST]
 gi|157020663|gb|EAA04166.4| AGAP006786-PA [Anopheles gambiae str. PEST]
          Length = 190

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%), Gaps = 3/93 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPP+SY+ALIAMAI++  ++R TL+ IY YI   FPY+ +N++GWQNSIRHNLSLNDCF+
Sbjct: 69  KPPFSYIALIAMAISSAPNQRLTLSGIYKYIMDNFPYYRENRQGWQNSIRHNLSLNDCFI 128

Query: 348 KVAKE---GAGERKGNYWTLATKHEDMFENGNY 377
           KV +E   G G +  +YW L     DMFE GNY
Sbjct: 129 KVPREKASGTGGKGQSYWMLDPSANDMFEQGNY 161


>gi|18858691|ref|NP_571357.1| forkhead box A sequence [Danio rerio]
 gi|2982345|gb|AAC06364.1| fork head domain protein FKD4 [Danio rerio]
          Length = 343

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSL 342
           T    KPPYSY++LI MAI  +  KR TL EIY++I   FPY+ +N++ WQNSIRH+LS 
Sbjct: 84  TLSHAKPPYSYISLICMAIQQSPAKRLTLNEIYDWIRQLFPYYRQNQQRWQNSIRHSLSF 143

Query: 343 NDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NDCFV+V +      KG+YW L     +MFENG Y RR++R K
Sbjct: 144 NDCFVRVPRSPDSPGKGSYWALHPDSGNMFENGCYMRRQKRFK 186


>gi|259013259|ref|NP_001158435.1| forkhead box B1 [Saccoglossus kowalevskii]
 gi|197320541|gb|ACH68432.1| forkhead box B protein [Saccoglossus kowalevskii]
          Length = 324

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 70/100 (70%), Gaps = 1/100 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+AL AMAI ++  K   L++IY +I  +FP++ KN + WQNS+RHNLS NDCF+
Sbjct: 13  KPPYSYIALTAMAIQSSTEKMLPLSDIYKFIMDRFPFYRKNTQRWQNSLRHNLSFNDCFI 72

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRP 386
           K+ +      KG+YW L     DMFENG++ RRR+R K P
Sbjct: 73  KIPRRPDRPGKGSYWALHPFCGDMFENGSFLRRRKRFKSP 112


>gi|74136027|ref|NP_001027947.1| foxE protein [Ciona intestinalis]
 gi|40642807|emb|CAD58963.1| FoxE [Ciona intestinalis]
          Length = 721

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 65/88 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI+MAI ++  ++ TL  IY +I  +FP++ +  K WQNSIRHNL+LNDCF+
Sbjct: 351 KPPYSYIALISMAIASSPERKLTLGHIYKFIMERFPFYREQNKKWQNSIRHNLTLNDCFI 410

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           K+ +E     KGNYWTL    EDMF+NG
Sbjct: 411 KLPREPGKPGKGNYWTLDPAAEDMFDNG 438


>gi|24497501|ref|NP_004487.2| hepatocyte nuclear factor 3-alpha [Homo sapiens]
 gi|296434509|sp|P55317.2|FOXA1_HUMAN RecName: Full=Hepatocyte nuclear factor 3-alpha; Short=HNF-3-alpha;
           Short=HNF-3A; AltName: Full=Forkhead box protein A1;
           AltName: Full=Transcription factor 3A; Short=TCF-3A
 gi|11878208|gb|AAG40847.1| hepatocyte nuclear factor-3alpha [Homo sapiens]
 gi|21707517|gb|AAH33890.1| Forkhead box A1 [Homo sapiens]
 gi|117644492|emb|CAL37741.1| hypothetical protein [synthetic construct]
 gi|117645302|emb|CAL38117.1| hypothetical protein [synthetic construct]
 gi|117645444|emb|CAL38188.1| hypothetical protein [synthetic construct]
 gi|117645562|emb|CAL38247.1| hypothetical protein [synthetic construct]
 gi|119586248|gb|EAW65844.1| forkhead box A1 [Homo sapiens]
 gi|189054016|dbj|BAG36523.1| unnamed protein product [Homo sapiens]
 gi|208966288|dbj|BAG73158.1| forkhead box A1 [synthetic construct]
          Length = 472

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 267


>gi|284018088|sp|Q9PVY8.2|FXC2B_XENLA RecName: Full=Forkhead box protein C2-B; Short=FoxC2-B;
           Short=FoxC2b; AltName: Full=Fork head domain-related
           protein 4'; Short=FD-4'; Short=xFD-4'; Short=xFD4 B
 gi|213625257|gb|AAI70193.1| FD-4' protein [Xenopus laevis]
 gi|213626827|gb|AAI70195.1| FD-4' protein [Xenopus laevis]
          Length = 461

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWSLDPDSYNMFENGSF 161


>gi|410958608|ref|XP_003985908.1| PREDICTED: forkhead box protein C1 [Felis catus]
          Length = 513

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 217 TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 276

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 277 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 316


>gi|351700955|gb|EHB03874.1| Hepatocyte nuclear factor 3-alpha [Heterocephalus glaber]
          Length = 443

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 160 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 219

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 220 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 257


>gi|34451554|gb|AAQ72341.1| FOXD4 [Pan troglodytes]
          Length = 417

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  N HKR TL+ I  +I+ +FPY+ +    WQNSI HNLSLNDCFV
Sbjct: 108 KPPYSYIALITMAILQNPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIHHNLSLNDCFV 167

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYW+L    +DMF+NG+
Sbjct: 168 KIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|395505507|ref|XP_003757082.1| PREDICTED: forkhead box protein S1 [Sarcophilus harrisii]
          Length = 420

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI ++  +RATL+ IY+YI  +F ++  N+ GWQNSIRHNLSLN+CFV
Sbjct: 38  KPPYSYIALITMAIQSSPGQRATLSAIYHYIMGRFAFYRDNRPGWQNSIRHNLSLNECFV 97

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KG+YWTL     +MFENG++
Sbjct: 98  KVPRDDRRPGKGSYWTLDPDSYNMFENGSF 127


>gi|29838553|gb|AAO92606.1| budhead [Hydra vulgaris]
          Length = 321

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI M+I N   K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCF+
Sbjct: 81  KPPYSYISLITMSIQNTPGKAVTLSEIYQFIMDHFPYYRQNQQRWQNSIRHSLSFNDCFI 140

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPY--LGDMY 402
           KV +      KG++WTL     +MFENG Y RRR   +  R  S N   +  + DMY
Sbjct: 141 KVPRSPDKPGKGSFWTLHPDAGNMFENGCYLRRRERFKSDRKASLNIMNHSRVNDMY 197


>gi|18858703|ref|NP_571365.1| forkhead box protein D3 [Danio rerio]
 gi|2982349|gb|AAC06366.1| fork head domain protein FKD6 [Danio rerio]
          Length = 371

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 96  KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 155

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 156 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 184


>gi|426376729|ref|XP_004055144.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 3-alpha
           [Gorilla gorilla gorilla]
          Length = 440

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 137 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 197 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 234


>gi|329664874|ref|NP_001192958.1| hepatocyte nuclear factor 3-alpha [Bos taurus]
 gi|296475372|tpg|DAA17487.1| TPA: forkhead box A1 [Bos taurus]
          Length = 468

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL     +MFENG Y RR++
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQK 264


>gi|256996788|emb|CAY90194.1| forkhead transcription factor A [Lytechinus variegatus]
          Length = 440

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL++IY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 145 KPPYSYISLITMAIQQSPQKMVTLSDIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 204

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNAKPYLGD 400
           KV +      KG++WTL     +MFENG Y RR++R K P +     A+   GD
Sbjct: 205 KVPRTPDRPGKGSFWTLHPDAGNMFENGCYLRRQKRFKCPKKEAQRQAQKAAGD 258


>gi|440900535|gb|ELR51651.1| Hepatocyte nuclear factor 3-alpha, partial [Bos grunniens mutus]
          Length = 423

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 172 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 231

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL     +MFENG Y RR++
Sbjct: 232 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQK 266


>gi|118344410|ref|NP_001072032.1| transcription factor protein [Ciona intestinalis]
 gi|70569540|dbj|BAE06431.1| transcription factor protein [Ciona intestinalis]
          Length = 587

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|224091399|ref|XP_002186877.1| PREDICTED: forkhead box protein D1 [Taeniopygia guttata]
          Length = 417

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 124 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 183

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 184 KIPREPGNPGKGNYWTLDPESADMFDNGS 212


>gi|84105533|gb|AAI11545.1| Foxc2-a protein [Xenopus laevis]
          Length = 302

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 68  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 127

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MFENG++
Sbjct: 128 CFVKVPRDDKKPGKGSYWSLDPDSYNMFENGSF 160


>gi|395514446|ref|XP_003761428.1| PREDICTED: forkhead box protein E1 [Sarcophilus harrisii]
          Length = 382

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 80  GKPPYSYIALIAMAIAHAPDRKLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 139

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           +K+ +E     KGNYW L    EDMFE+G+
Sbjct: 140 IKIPREPGRPGKGNYWALDPNAEDMFESGS 169


>gi|334321523|ref|XP_003340123.1| PREDICTED: hypothetical protein LOC100619340 [Monodelphis
           domestica]
          Length = 525

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 126 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 185

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 186 KIPREPGNPGKGNYWTLDPESADMFDNGS 214


>gi|321458612|gb|EFX69677.1| hypothetical protein DAPPUDRAFT_8599 [Daphnia pulex]
          Length = 95

 Score =  119 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/95 (58%), Positives = 69/95 (72%)

Query: 291 YSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVA 350
           YSY+ALIAMAI +   K+ TL  IY +I  +FPY+ +N++GWQNSIRHNLSLNDCF+KV 
Sbjct: 1   YSYIALIAMAIQSATDKKITLNGIYQFIMDRFPYYRENRQGWQNSIRHNLSLNDCFIKVP 60

Query: 351 KEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR 385
           +E     KG +WTL     DMFE GNYRRR+R  R
Sbjct: 61  REKGRPGKGAFWTLDPACYDMFEAGNYRRRKRKPR 95


>gi|60654413|gb|AAX29897.1| forkhead box A1 [synthetic construct]
          Length = 473

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 267


>gi|156379696|ref|XP_001631592.1| predicted protein [Nematostella vectensis]
 gi|156218635|gb|EDO39529.1| predicted protein [Nematostella vectensis]
          Length = 116

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 1/98 (1%)

Query: 284 TDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLN 343
            D  KPP+SY+ALI M+I  + ++  TL EIY +I  +FPYF KN++ WQNSIRHNLSLN
Sbjct: 12  CDEVKPPFSYIALITMSIEASPYRMRTLNEIYEFIMTRFPYFRKNQQKWQNSIRHNLSLN 71

Query: 344 DCFVKVAKEGAGE-RKGNYWTLATKHEDMFENGNYRRR 380
           DCFVKV +   G+  KGNYWTL     DMF +G++ RR
Sbjct: 72  DCFVKVPRSIFGKPGKGNYWTLHPSCGDMFGSGSFLRR 109


>gi|405971840|gb|EKC36648.1| Forkhead box protein B1 [Crassostrea gigas]
          Length = 318

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I ++     TL EIY +I  +FPYF+ N++ WQNSIRHNLSLNDCFV
Sbjct: 78  KPPYSYIALITMSIESSTSGMMTLNEIYAFIMNRFPYFKDNQQRWQNSIRHNLSLNDCFV 137

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           K+ +      KGNYW L     DMF NG++ RR +R K
Sbjct: 138 KIPRAPGRPGKGNYWALHPGCGDMFGNGSFLRRAKRFK 175


>gi|403263905|ref|XP_003924240.1| PREDICTED: hepatocyte nuclear factor 3-alpha [Saimiri boliviensis
           boliviensis]
          Length = 437

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 137 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 197 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 234


>gi|334325250|ref|XP_003340627.1| PREDICTED: forkhead box protein D1-like [Monodelphis domestica]
          Length = 486

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 122 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 181

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 182 KIPREPGNPGKGNYWTLDPESADMFDNGS 210


>gi|332679100|gb|AEE88205.1| forkhead-related transcriptional factor E1 [Meleagris gallopavo]
          Length = 286

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 64/92 (69%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           +  KPPYSY+ALIAMAI     +R TL  IY +I  +FP++  + + WQNSIRHNL+LND
Sbjct: 47  ERGKPPYSYIALIAMAIGQAPERRLTLGGIYRFITERFPFYRDSPRKWQNSIRHNLTLND 106

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           CFVKV +E     KGNYWTL     DMFE+G+
Sbjct: 107 CFVKVPREPGRPGKGNYWTLDPHARDMFESGS 138


>gi|410048403|ref|XP_001144389.3| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 3-alpha,
           partial [Pan troglodytes]
          Length = 535

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 233 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 292

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 293 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 330


>gi|224062305|ref|XP_002195537.1| PREDICTED: forkhead box protein B1 [Taeniopygia guttata]
          Length = 320

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 73/111 (65%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRT 389
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+  + V++
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFKVVKS 114


>gi|45384420|ref|NP_990282.1| forkhead box protein D3 [Gallus gallus]
 gi|3913839|sp|P79772.1|FOXD3_CHICK RecName: Full=Forkhead box protein D3; AltName: Full=HNF3/FH
           transcription factor genesis; AltName: Full=Winged-helix
           protein CWH-3
 gi|1766077|gb|AAC60066.1| winged helix protein CWH-3 [Gallus gallus]
          Length = 394

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 117 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 176

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 177 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 205


>gi|126428417|gb|ABO13929.1| forkhead box L2 [Equus caballus]
          Length = 130

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 58/70 (82%)

Query: 308 RATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATK 367
           R TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV +EG GERKGNYWTL   
Sbjct: 1   RLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPA 60

Query: 368 HEDMFENGNY 377
            EDMFE GNY
Sbjct: 61  CEDMFEKGNY 70


>gi|348502106|ref|XP_003438610.1| PREDICTED: forkhead box protein I1-like [Oreochromis niloticus]
          Length = 247

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 75/106 (70%), Gaps = 7/106 (6%)

Query: 279 PSSTTTDSNK---PPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           PSS+T +  K   P YSY+ALIAMAI  +  +R TL+ IY +I  +FPY+  N++ WQNS
Sbjct: 20  PSSSTDEEKKMCRPAYSYIALIAMAIQQSPDQRVTLSGIYEFIMRRFPYYRSNQRAWQNS 79

Query: 336 IRHNLSLNDCFVKVAK-EGAGERKGNYWTLATKHE---DMFENGNY 377
           IRHNLSLN CF+KV + EG  + KGN+WT AT  E   D+FENGN+
Sbjct: 80  IRHNLSLNSCFIKVPRTEGNEKGKGNFWTFATGCESMLDLFENGNF 125


>gi|443697019|gb|ELT97594.1| hypothetical protein CAPTEDRAFT_225366 [Capitella teleta]
          Length = 254

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 67/107 (62%)

Query: 276 ISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           +  P   T    KPPYSY+AL AMAI     K  TL+EIY +I  +FPY+  N   WQNS
Sbjct: 1   MPRPGRNTYSDQKPPYSYIALTAMAIQTAPDKMMTLSEIYKFIMDRFPYYRDNTPRWQNS 60

Query: 336 IRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           +RHNLS NDCF+K+ +      KG+YW L     DMFENG++ RRR+
Sbjct: 61  LRHNLSFNDCFIKIPRRPDRPGKGSYWALHPSCGDMFENGSFLRRRK 107


>gi|2352801|gb|AAB69278.1| fork head 1 [Molgula oculata]
          Length = 567

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ +++HK  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 117 KPPYSYISLITMALQSSQHKMMTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 176

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 177 KVPRSPDKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 214


>gi|327270874|ref|XP_003220213.1| PREDICTED: forkhead box protein D3-like [Anolis carolinensis]
          Length = 386

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 90  KPPYSYIALITMAILQSPQKKLTLSGICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 149

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 150 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 178


>gi|190337950|gb|AAI62391.1| Forkhead box A3 [Danio rerio]
          Length = 441

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  ++ K  TL EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 143 KPPYSYISLITMAIQQSQSKMLTLNEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 202

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YW L     +MFENG Y RR++
Sbjct: 203 KVARSPDKPGKGSYWALHPNSGNMFENGCYLRRQK 237


>gi|4758392|ref|NP_004463.1| forkhead box protein D1 [Homo sapiens]
 gi|2494490|sp|Q16676.1|FOXD1_HUMAN RecName: Full=Forkhead box protein D1; AltName:
           Full=Forkhead-related protein FKHL8; AltName:
           Full=Forkhead-related transcription factor 4;
           Short=FREAC-4
 gi|1399237|gb|AAC50660.1| forkhead related activator 4 [Homo sapiens]
 gi|1399239|gb|AAC50661.1| FREAC-4 [Homo sapiens]
 gi|119616127|gb|EAW95721.1| forkhead box D1 [Homo sapiens]
 gi|182888283|gb|AAI60026.1| Forkhead box D1 [synthetic construct]
          Length = 465

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 125 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 184

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 185 KIPREPGNPGKGNYWTLDPESADMFDNGS 213


>gi|3892202|gb|AAC78313.1| transcription repressor brain factor 2 [Xenopus laevis]
          Length = 345

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I  +  KR TL+EI ++I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 68  KPPYSYIALITMSILQSPKKRLTLSEICDFISSRFPYYREKFPAWQNSIRHNLSLNDCFV 127

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 128 KIPREPGNPGKGNYWTLDPESADMFDNGS 156


>gi|70569568|dbj|BAE06436.1| transcription factor protein [Ciona intestinalis]
          Length = 578

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 65/88 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI+MAI ++  ++ TL  IY +I  +FP++ +  K WQNSIRHNL+LNDCF+
Sbjct: 208 KPPYSYIALISMAIASSPERKLTLGHIYKFIMERFPFYREQNKKWQNSIRHNLTLNDCFI 267

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           K+ +E     KGNYWTL    EDMF+NG
Sbjct: 268 KLPREPGKPGKGNYWTLDPAAEDMFDNG 295


>gi|190576657|gb|ACE79136.1| winged helix/forkhead transcription factor FoxAa [Branchiostoma
           floridae]
          Length = 407

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI M+I ++ +K  TLAEIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 111 KPPYSYISLITMSIQSSPNKMVTLAEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 170

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL  +  +MFENG Y RR++
Sbjct: 171 KVPRTPDRPGKGSYWTLHPEAGNMFENGCYLRRQK 205


>gi|3676255|emb|CAA09725.1| brain factor 2 [Xenopus laevis]
          Length = 345

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I  +  KR TL+EI ++I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 68  KPPYSYIALITMSILQSPKKRLTLSEICDFISSRFPYYREKFPAWQNSIRHNLSLNDCFV 127

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 128 KIPREPGNPGKGNYWTLDPESADMFDNGS 156


>gi|344273379|ref|XP_003408499.1| PREDICTED: hepatocyte nuclear factor 3-alpha [Loxodonta africana]
          Length = 469

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 169 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 228

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 229 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 266


>gi|126293886|ref|XP_001364156.1| PREDICTED: forkhead box protein S1-like [Monodelphis domestica]
          Length = 411

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI ++  +RATL+ IY+YI  +F ++  N+ GWQNSIRHNLSLN+CFV
Sbjct: 29  KPPYSYIALITMAIQSSPGQRATLSAIYHYIMGRFAFYRDNRPGWQNSIRHNLSLNECFV 88

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KG+YWTL     +MFENG++
Sbjct: 89  KVPRDDRRPGKGSYWTLDPDSYNMFENGSF 118


>gi|147901321|ref|NP_001079052.1| forkhead box protein D1 [Xenopus laevis]
 gi|80477637|gb|AAI08578.1| Foxd1-A protein [Xenopus laevis]
          Length = 345

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I  +  KR TL+EI ++I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 68  KPPYSYIALITMSILQSPKKRLTLSEICDFISSRFPYYREKFPAWQNSIRHNLSLNDCFV 127

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 128 KIPREPGNPGKGNYWTLDPESADMFDNGS 156


>gi|116247780|sp|Q9PSY4.2|FOXD1_XENLA RecName: Full=Forkhead box protein D1; Short=FoxD1; AltName:
           Full=Brain factor 2; Short=BF-2; Short=xBF-2; AltName:
           Full=Xbf2
          Length = 345

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 66/89 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I  +  KR TL+EI ++I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 68  KPPYSYIALITMSILQSPKKRLTLSEICDFISSRFPYYREKFPAWQNSIRHNLSLNDCFV 127

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 128 KIPREPGNPGKGNYWTLDPESADMFDNGS 156


>gi|47225587|emb|CAG07930.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 366

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 63/88 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 91  KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 150

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           K+ +E     KGNYWTL     DMF+NG
Sbjct: 151 KIPREPGNPGKGNYWTLDPDSADMFDNG 178


>gi|161511585|gb|ABX71819.1| FOXA [Paracentrotus lividus]
          Length = 436

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL++IY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 142 KPPYSYISLITMAIQQSPQKMVTLSDIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 201

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNAKPYLGD 400
           KV +      KG++WTL     +MFENG Y RR++R K P +     A+   GD
Sbjct: 202 KVPRTPDRPGKGSFWTLHPDAGNMFENGCYLRRQKRFKCPKKEAQRQAQKAAGD 255


>gi|10640964|dbj|BAB16309.1| HNF-3 [Halocynthia roretzi]
          Length = 565

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ +++ K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 126 KPPYSYISLITMALQSSKQKMMTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 185

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YW L     +MFENG Y RR++R K
Sbjct: 186 KVARSPDKPGKGSYWALHQDAHNMFENGCYLRRQKRFK 223


>gi|334313583|ref|XP_001373168.2| PREDICTED: forkhead box protein I2-A-like [Monodelphis domestica]
          Length = 366

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +  +K+ TL++IY Y+   FP+++K+K GWQNSIRHNLSLNDCF 
Sbjct: 122 RPPYSYSALIAMAIESAPYKKLTLSQIYQYVEGTFPFYKKSKAGWQNSIRHNLSLNDCFK 181

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF++GN+
Sbjct: 182 KVPRDEDDPGKGNYWTLDPNCEKMFDHGNF 211


>gi|205364397|gb|ACI04544.1| FOXD3 [Gallus gallus]
          Length = 345

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 119 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 178

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 179 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 207


>gi|2982355|gb|AAC06369.1| fork head domain protein FKD9, partial [Danio rerio]
          Length = 353

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 92  KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 151

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 152 KIPREPGNPGKGNYWTLDPESADMFDNGS 180


>gi|270004635|gb|EFA01083.1| hypothetical protein TcasGA2_TC004006 [Tribolium castaneum]
          Length = 260

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 7/97 (7%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAI++   +R TL+ IY +I   FPY+ +NK+GWQNSIRHNLSLNDCFV
Sbjct: 46  KPPYSYIALIAMAISSAPKERLTLSGIYRFIMDNFPYYRENKQGWQNSIRHNLSLNDCFV 105

Query: 348 KVAKEGAGER-------KGNYWTLATKHEDMFENGNY 377
           KV ++    R       KG+YW L  K  +MFE GNY
Sbjct: 106 KVPRDKVSPRGPEQAGGKGSYWMLDPKAANMFEKGNY 142


>gi|345780584|ref|XP_852832.2| PREDICTED: forkhead box protein E3 [Canis lupus familiaris]
          Length = 348

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMA+ +   +R TLA IY +I  +F ++  + + WQNSIRHNL+LNDCF
Sbjct: 45  GKPPYSYIALIAMALAHAPGRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCF 104

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           VKV +E     KGNYWTL     DMFENG+
Sbjct: 105 VKVPREPGNPGKGNYWTLDPAAADMFENGS 134


>gi|344289787|ref|XP_003416622.1| PREDICTED: forkhead box protein I2-like [Loxodonta africana]
          Length = 317

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
           ++P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CF
Sbjct: 31  SRPAYSYIALIAMAIQQSPAGRVTLSGIYDFIIHKFPYYRANQRAWQNSIRHNLSLNSCF 90

Query: 347 VKVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           VKV + EG  + KGNYWT A   E   D+FENGNYRRRRR + P R
Sbjct: 91  VKVPRAEGHEKGKGNYWTFAGGCESMLDLFENGNYRRRRRRRGPKR 136


>gi|426248842|ref|XP_004018167.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 3-alpha
           [Ovis aries]
          Length = 454

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 66/95 (69%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 173 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 232

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL     +MFENG Y RR +
Sbjct: 233 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRXQ 267


>gi|383853178|ref|XP_003702100.1| PREDICTED: uncharacterized protein LOC100879032 [Megachile
           rotundata]
          Length = 489

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 69/93 (74%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALIAMAI +   K+ TL  IY +I  +FPY+ +NK+GWQNSIRHNLSLN+
Sbjct: 67  DMVKPPYSYIALIAMAIQHAPDKKITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNE 126

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YW+L     +MF+NG+Y
Sbjct: 127 CFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSY 159


>gi|6912372|ref|NP_036315.1| forkhead box protein D3 [Homo sapiens]
 gi|8134475|sp|Q9UJU5.1|FOXD3_HUMAN RecName: Full=Forkhead box protein D3; AltName: Full=HNF3/FH
           transcription factor genesis
 gi|6180201|gb|AAF05844.1|AF197560_1 winged helix/forkhead transcriptional regulator Genesis/HFH2/FoxD3
           [Homo sapiens]
 gi|119626980|gb|EAX06575.1| forkhead box D3 [Homo sapiens]
 gi|208968403|dbj|BAG74040.1| forkhead box D3 [synthetic construct]
 gi|225000298|gb|AAI72572.1| Forkhead box D3 [synthetic construct]
 gi|225000456|gb|AAI72266.1| Forkhead box D3 [synthetic construct]
          Length = 478

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +PS       KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIR
Sbjct: 131 APSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIR 190

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 HNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGS 229


>gi|304376263|ref|NP_001182057.1| forkhead box L1-like [Mus musculus]
          Length = 216

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWT A   E   D+FENGN+RRRRR + P R
Sbjct: 92  KVPRTEGNDKGKGNYWTFAGGCESLLDLFENGNFRRRRRRRGPKR 136


>gi|46048750|ref|NP_990523.1| forkhead box protein D1 [Gallus gallus]
 gi|3023382|sp|Q98937.1|FOXD1_CHICK RecName: Full=Forkhead box protein D1; AltName: Full=Brain factor
           2; Short=BF-2; Short=cBF-2; AltName: Full=HFH-BF-2;
           AltName: Full=T-14-6
 gi|1546784|gb|AAB08467.1| chicken brain factor-2 [Gallus gallus]
          Length = 440

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 143 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 202

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 203 KIPREPGNPGKGNYWTLDPESADMFDNGS 231


>gi|392345282|ref|XP_001057782.2| PREDICTED: forkhead box protein D1 [Rattus norvegicus]
          Length = 455

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 130 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 190 KIPREPGNPGKGNYWTLDPESADMFDNGS 218


>gi|47214250|emb|CAG01927.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 363

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALI+MAI N+  ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 41  GKPPYSYIALISMAIANSPDRKLTLGGIYKFITERFPFYRDNSKKWQNSIRHNLTLNDCF 100

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           +K+ +E     KGNYW L    EDMFE+G
Sbjct: 101 IKIPREPGRPGKGNYWALDPNAEDMFESG 129


>gi|327289932|ref|XP_003229678.1| PREDICTED: forkhead box protein A2-like [Anolis carolinensis]
          Length = 413

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 139 KPPYSYISLITMAIQQAPSKMLTLNEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 198

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNAK 395
           KVA+      KG+YW L     +MFENG Y RR++R K   +    NAK
Sbjct: 199 KVARSPDKPGKGSYWALHPNSGNMFENGCYLRRQKRFKIEDKAKKVNAK 247


>gi|410918345|ref|XP_003972646.1| PREDICTED: uncharacterized protein LOC101073696 [Takifugu rubripes]
          Length = 710

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 65/94 (69%)

Query: 284 TDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLN 343
             S KPPYSY+ALI MAI  +  KR TL+EI ++I  +F Y+ +    WQNSIRHNLSLN
Sbjct: 474 CSSVKPPYSYIALITMAILQSPTKRLTLSEICDFIIQRFAYYREKFPAWQNSIRHNLSLN 533

Query: 344 DCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           DCFVK+ +E     KGNYWTL     DMFENG++
Sbjct: 534 DCFVKMPREPGNPGKGNYWTLDPMSADMFENGSF 567


>gi|395502579|ref|XP_003755656.1| PREDICTED: forkhead box protein B1 [Sarcophilus harrisii]
          Length = 323

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|1066122|gb|AAB06493.1| hepatocyte nuclear factor-3 alpha [Homo sapiens]
 gi|5805398|gb|AAD51979.1| hepatocyte nuclear factor-3alpha [Homo sapiens]
          Length = 473

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 171 KPPYSYISLITMAIQRAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 230

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 231 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 268


>gi|304376261|ref|NP_001182056.1| forkhead box L1-like [Homo sapiens]
          Length = 233

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWT A   E   D+FENGNYRRRRR + P R
Sbjct: 92  KVPRSEGHEKGKGNYWTFAGGCESLLDLFENGNYRRRRRRRGPKR 136


>gi|301069358|ref|NP_571346.2| forkhead box D1 [Danio rerio]
          Length = 369

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 64/88 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 95  KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 154

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           K+ +E     KGNYWTL  +  DMF+NG
Sbjct: 155 KIPREPGNPGKGNYWTLDPESADMFDNG 182


>gi|311213905|ref|NP_001185662.1| forkhead box D3 [Macaca mulatta]
          Length = 478

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +PS       KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIR
Sbjct: 131 APSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIR 190

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 HNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGS 229


>gi|49902739|gb|AAH75922.1| Forkhead box D1 [Danio rerio]
          Length = 363

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 64/88 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 89  KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 148

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           K+ +E     KGNYWTL  +  DMF+NG
Sbjct: 149 KIPREPGNPGKGNYWTLDPESADMFDNG 176


>gi|402854809|ref|XP_003892046.1| PREDICTED: forkhead box protein D3 [Papio anubis]
          Length = 671

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +PS       KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIR
Sbjct: 131 APSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIR 190

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 HNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGS 229


>gi|410917956|ref|XP_003972452.1| PREDICTED: forkhead box protein E1-like [Takifugu rubripes]
          Length = 363

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALI+MAI N+  ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 41  GKPPYSYIALISMAIANSPDRKLTLGGIYKFITERFPFYRDNSKKWQNSIRHNLTLNDCF 100

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENG 375
           +K+ +E     KGNYW L    EDMFE+G
Sbjct: 101 IKIPREPGRPGKGNYWALDPNAEDMFESG 129


>gi|410254042|gb|JAA14988.1| forkhead box C1 [Pan troglodytes]
          Length = 547

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 67/93 (72%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|397515447|ref|XP_003827963.1| PREDICTED: forkhead box protein B1 [Pan paniscus]
          Length = 325

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 110


>gi|109065791|ref|XP_001091091.1| PREDICTED: hypothetical protein LOC702793 [Macaca mulatta]
          Length = 292

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 68/94 (72%), Gaps = 4/94 (4%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 88  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 147

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNY 377
           KV + EG  + KGNYWT A   E   D+FENGNY
Sbjct: 148 KVPRSEGHEKGKGNYWTFAGGCESLLDLFENGNY 181


>gi|126276992|ref|XP_001365592.1| PREDICTED: forkhead box protein B1-like [Monodelphis domestica]
          Length = 323

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|114556961|ref|XP_513453.2| PREDICTED: forkhead box protein D3 [Pan troglodytes]
          Length = 478

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +PS       KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIR
Sbjct: 131 APSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIR 190

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 HNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGS 229


>gi|440899106|gb|ELR50471.1| Forkhead box protein B1 [Bos grunniens mutus]
          Length = 325

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 110


>gi|403303979|ref|XP_003942591.1| PREDICTED: forkhead box protein I3 [Saimiri boliviensis
           boliviensis]
          Length = 544

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 70/94 (74%)

Query: 291 YSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVA 350
           +SY ALIAMAI +   ++ TL+ IY ++A  FP+++++K GWQNSIRHNLSLNDCF KV 
Sbjct: 273 HSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFKKVP 332

Query: 351 KEGAGERKGNYWTLATKHEDMFENGNYRRRRRMK 384
           ++     KGNYWTL    E MF+NGN+RR+R+ +
Sbjct: 333 RDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRR 366


>gi|73977759|ref|XP_852800.1| PREDICTED: forkhead box protein D2 [Canis lupus familiaris]
          Length = 306

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 139 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 198

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 199 KIPREPGNPGKGNYWTLDPESADMFDNGS 227


>gi|395822264|ref|XP_003784441.1| PREDICTED: forkhead box protein B1-like [Otolemur garnettii]
          Length = 325

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|297664747|ref|XP_002810789.1| PREDICTED: forkhead box protein D3 [Pongo abelii]
          Length = 478

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 67/98 (68%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           PS       KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRH
Sbjct: 132 PSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRH 191

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           NLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 192 NLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGS 229


>gi|1296447|emb|CAA65368.1| AmHNF-3-1 protein [Branchiostoma floridae]
          Length = 403

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI M+I ++ +K  TLAEIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 111 KPPYSYISLITMSIQSSPNKMVTLAEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 170

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL  +  +MFENG Y RR++
Sbjct: 171 KVPRTPDRPGKGSYWTLHPEAGNMFENGCYLRRQK 205


>gi|1280487|emb|CAA63336.1| transcription factor [Mus musculus]
          Length = 324

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|355692761|gb|EHH27364.1| Transcription factor FKH-5 [Macaca mulatta]
          Length = 325

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|403274561|ref|XP_003929043.1| PREDICTED: forkhead box protein B1 [Saimiri boliviensis
           boliviensis]
          Length = 325

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|348572333|ref|XP_003471947.1| PREDICTED: hepatocyte nuclear factor 3-alpha-like [Cavia porcellus]
          Length = 377

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 70/100 (70%), Gaps = 1/100 (1%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           + KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDC
Sbjct: 73  ARKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDC 132

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           FVKVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 133 FVKVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 172


>gi|301775813|ref|XP_002923327.1| PREDICTED: forkhead box protein B1-like [Ailuropoda melanoleuca]
 gi|345795016|ref|XP_003433969.1| PREDICTED: forkhead box protein B1 [Canis lupus familiaris]
 gi|410961132|ref|XP_003987139.1| PREDICTED: forkhead box protein B1 [Felis catus]
 gi|281342319|gb|EFB17903.1| hypothetical protein PANDA_012450 [Ailuropoda melanoleuca]
          Length = 325

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|297696783|ref|XP_002825559.1| PREDICTED: forkhead box protein B1 [Pongo abelii]
          Length = 325

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|147903421|ref|NP_001079078.1| forkhead box protein D3-B [Xenopus laevis]
 gi|82247047|sp|Q9DEN3.1|FXD3B_XENLA RecName: Full=Forkhead box protein D3-B; Short=FoxD3-B;
           Short=FoxD3b; AltName: Full=Fork head domain-related
           protein 6'; Short=xFD-6'
 gi|10799935|emb|CAC12895.1| winged helix transcription factor [Xenopus laevis]
 gi|49257271|gb|AAH72772.1| Foxd3b-A protein [Xenopus laevis]
          Length = 371

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 66/90 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCF+
Sbjct: 94  KPPYSYIALITMSILQSPQKKLTLSGICEFISSRFPYYREKFPAWQNSIRHNLSLNDCFI 153

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +E     KGNYWTL  + EDMF+NG++
Sbjct: 154 KIPREPGNPGKGNYWTLDPQSEDMFDNGSF 183


>gi|61867578|ref|XP_585450.1| PREDICTED: forkhead box protein B1 [Bos taurus]
 gi|296213368|ref|XP_002753240.1| PREDICTED: forkhead box protein B1 [Callithrix jacchus]
 gi|297479637|ref|XP_002690896.1| PREDICTED: forkhead box protein B1 [Bos taurus]
 gi|296483253|tpg|DAA25368.1| TPA: forkhead box B1-like [Bos taurus]
          Length = 325

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|159031988|ref|NP_071773.2| forkhead box protein B1 [Mus musculus]
 gi|21542341|sp|Q64732.2|FOXB1_MOUSE RecName: Full=Forkhead box protein B1; AltName: Full=Transcription
           factor FKH-5
 gi|2098744|gb|AAB57686.1| winged-helix protein [Mus musculus]
 gi|84993289|gb|AAI11909.1| Forkhead box B1 [Mus musculus]
 gi|148694227|gb|EDL26174.1| forkhead box B1 [Mus musculus]
          Length = 325

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|402862674|ref|XP_003895671.1| PREDICTED: forkhead box protein L1-like [Papio anubis]
          Length = 236

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWT A   E   D+FENGNYRRRRR + P R
Sbjct: 92  KVPRSEGHEKGKGNYWTFAGGCESLLDLFENGNYRRRRRRRGPKR 136


>gi|348505864|ref|XP_003440480.1| PREDICTED: forkhead box protein B1-like [Oreochromis niloticus]
          Length = 313

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI +   K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPNCGDMFENGSFLRRRKRFK 110


>gi|118344336|ref|NP_001071991.1| transcription factor protein [Ciona intestinalis]
 gi|70569534|dbj|BAE06430.1| transcription factor protein [Ciona intestinalis]
          Length = 633

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|426329903|ref|XP_004025970.1| PREDICTED: forkhead box protein D3 [Gorilla gorilla gorilla]
          Length = 325

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +PS       KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIR
Sbjct: 131 APSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIR 190

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 HNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGS 229


>gi|80477627|gb|AAI08570.1| Foxd2-A protein [Xenopus laevis]
          Length = 346

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 64/88 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 78  KPPYSYIALITMSILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 137

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           K+ +E     KGNYWTL  +  DMF+NG
Sbjct: 138 KIPREPGNPGKGNYWTLDPESADMFDNG 165


>gi|383853321|ref|XP_003702171.1| PREDICTED: fork head domain-containing protein FD2-like [Megachile
           rotundata]
          Length = 225

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 8/98 (8%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMAIN++  +R TL+ IY +I  +FPY+ +N++GWQNSIRHNLSLNDCFV
Sbjct: 39  KPPYSYIALIAMAINSSPKQRLTLSGIYRFIMDRFPYYRENRQGWQNSIRHNLSLNDCFV 98

Query: 348 KVAK--------EGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +        E     KG+YWTL      MFE+GNY
Sbjct: 99  KIPRDKVIGNDNEQDQAGKGSYWTLDPSASGMFEHGNY 136


>gi|297694965|ref|XP_002824727.1| PREDICTED: hepatocyte nuclear factor 3-alpha isoform 1 [Pongo
           abelii]
 gi|297694967|ref|XP_002824728.1| PREDICTED: hepatocyte nuclear factor 3-alpha isoform 2 [Pongo
           abelii]
          Length = 439

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 137 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 197 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 234


>gi|105554437|ref|NP_036314.2| forkhead box protein B1 [Homo sapiens]
 gi|109081359|ref|XP_001100781.1| PREDICTED: forkhead box protein B1-like [Macaca mulatta]
 gi|114657381|ref|XP_529689.2| PREDICTED: forkhead box protein B1 [Pan troglodytes]
 gi|332235822|ref|XP_003267104.1| PREDICTED: forkhead box protein B1 [Nomascus leucogenys]
 gi|338717884|ref|XP_003363716.1| PREDICTED: forkhead box protein B1-like [Equus caballus]
 gi|354465258|ref|XP_003495097.1| PREDICTED: forkhead box protein B1-like [Cricetulus griseus]
 gi|402874456|ref|XP_003901053.1| PREDICTED: forkhead box protein B1 [Papio anubis]
 gi|215274160|sp|Q99853.3|FOXB1_HUMAN RecName: Full=Forkhead box protein B1; AltName: Full=Transcription
           factor FKH-5
 gi|109730609|gb|AAI13711.1| Forkhead box B1 [Homo sapiens]
 gi|119597987|gb|EAW77581.1| forkhead box B1 [Homo sapiens]
 gi|149028868|gb|EDL84209.1| rCG56656 [Rattus norvegicus]
 gi|158255324|dbj|BAF83633.1| unnamed protein product [Homo sapiens]
 gi|261861906|dbj|BAI47475.1| forkhead box B1 [synthetic construct]
 gi|344243806|gb|EGV99909.1| Forkhead box protein B1 [Cricetulus griseus]
 gi|431895949|gb|ELK05367.1| Forkhead box protein B1 [Pteropus alecto]
          Length = 325

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|395838194|ref|XP_003792004.1| PREDICTED: hepatocyte nuclear factor 3-alpha [Otolemur garnettii]
          Length = 439

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 137 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 197 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 234


>gi|119890087|ref|XP_610898.3| PREDICTED: forkhead box protein D3 [Bos taurus]
 gi|297473099|ref|XP_002686387.1| PREDICTED: forkhead box protein D3 [Bos taurus]
 gi|296489154|tpg|DAA31267.1| TPA: forkhead box D3-like [Bos taurus]
          Length = 481

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +PS       KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIR
Sbjct: 131 APSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIR 190

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 HNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGS 229


>gi|402875991|ref|XP_003901770.1| PREDICTED: hepatocyte nuclear factor 3-alpha isoform 1 [Papio
           anubis]
          Length = 470

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 267


>gi|297297716|ref|XP_002805074.1| PREDICTED: hepatocyte nuclear factor 3-alpha-like isoform 2 [Macaca
           mulatta]
 gi|297297718|ref|XP_001086449.2| PREDICTED: hepatocyte nuclear factor 3-alpha-like isoform 1 [Macaca
           mulatta]
 gi|402875993|ref|XP_003901771.1| PREDICTED: hepatocyte nuclear factor 3-alpha isoform 2 [Papio
           anubis]
          Length = 437

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 137 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 197 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 234


>gi|58332618|ref|NP_001011383.1| forkhead box protein D3 [Xenopus (Silurana) tropicalis]
 gi|82179386|sp|Q5M7L9.1|FOXD3_XENTR RecName: Full=Forkhead box protein D3; Short=FoxD3
 gi|56788859|gb|AAH88566.1| forkhead box D3 [Xenopus (Silurana) tropicalis]
 gi|89268301|emb|CAJ82837.1| forkhead box D3 [Xenopus (Silurana) tropicalis]
          Length = 369

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 92  KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 151

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 152 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 180


>gi|1184711|gb|AAA87569.1| Genesis [Mus musculus]
          Length = 465

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 131 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 219


>gi|148228084|ref|NP_001079322.1| forkhead box protein D2 [Xenopus laevis]
 gi|82245406|sp|Q90WN4.1|FOXD2_XENLA RecName: Full=Forkhead box protein D2; Short=FoxD2; Short=xFoxD2;
           AltName: Full=Fork head domain-related protein 9;
           Short=xFD-9; AltName: Full=Forkhead protein 3;
           Short=FKH-3; Short=xFKH3
 gi|15594128|emb|CAC69867.1| transcription factor [Xenopus laevis]
          Length = 346

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 64/88 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 78  KPPYSYIALITMSILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 137

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           K+ +E     KGNYWTL  +  DMF+NG
Sbjct: 138 KIPREPGNPGKGNYWTLDPESADMFDNG 165


>gi|112807215|ref|NP_034555.3| forkhead box protein D3 [Mus musculus]
 gi|157170016|gb|AAI52803.1| Forkhead box D3 [synthetic construct]
 gi|162317844|gb|AAI56565.1| Forkhead box D3 [synthetic construct]
          Length = 469

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 131 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 219


>gi|431838543|gb|ELK00475.1| Forkhead box protein C2 [Pteropus alecto]
          Length = 321

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|326927489|ref|XP_003209925.1| PREDICTED: forkhead box protein C2-like [Meleagris gallopavo]
          Length = 261

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 70  DLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 129

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 130 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 162


>gi|66793398|ref|NP_032285.2| hepatocyte nuclear factor 3-alpha [Mus musculus]
 gi|2506414|sp|P35582.2|FOXA1_MOUSE RecName: Full=Hepatocyte nuclear factor 3-alpha; Short=HNF-3-alpha;
           Short=HNF-3A; AltName: Full=Forkhead box protein A1
 gi|66396602|gb|AAH96524.1| Forkhead box A1 [Mus musculus]
          Length = 468

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 267


>gi|426233198|ref|XP_004010604.1| PREDICTED: forkhead box protein B1 [Ovis aries]
          Length = 304

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 110


>gi|148704754|gb|EDL36701.1| forkhead box A1 [Mus musculus]
          Length = 479

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 181 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 240

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 241 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 278


>gi|426218759|ref|XP_004003604.1| PREDICTED: forkhead box protein D3 [Ovis aries]
          Length = 344

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +PS       KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIR
Sbjct: 131 APSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIR 190

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 HNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGS 229


>gi|363737566|ref|XP_003641864.1| PREDICTED: forkhead box protein B1-like [Gallus gallus]
          Length = 320

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 110


>gi|345800141|ref|XP_003434654.1| PREDICTED: forkhead box protein D3 [Canis lupus familiaris]
          Length = 495

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +PS       KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIR
Sbjct: 132 APSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIR 191

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           HNLSLNDCFVK+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 192 HNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGS 230


>gi|1177219|gb|AAA86760.1| hepatocyte nuclear factor 3 alpha [Mus musculus]
          Length = 468

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 267


>gi|90133397|sp|Q61060.3|FOXD3_MOUSE RecName: Full=Forkhead box protein D3; AltName: Full=HNF3/FH
           transcription factor genesis; AltName: Full=Hepatocyte
           nuclear factor 3 forkhead homolog 2; Short=HFH-2
 gi|58047527|gb|AAC28352.2| HNF3/forkhead homolog 2 [Mus musculus]
          Length = 465

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 131 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  + EDMF+NG+
Sbjct: 191 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 219


>gi|410962156|ref|XP_003987641.1| PREDICTED: hepatocyte nuclear factor 3-alpha [Felis catus]
          Length = 465

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 66/94 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 234 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 293

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRR 381
           KVA+      KG+YWTL     +MFENG Y RR+
Sbjct: 294 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQ 327


>gi|10641134|dbj|BAB16313.1| fork head/HNF-3 homologue [Ciona savignyi]
          Length = 583

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 129 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 188

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 189 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 226


>gi|47225833|emb|CAF98313.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 313

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI +   K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPGCGDMFENGSFLRRRKRFK 110


>gi|402195|emb|CAA52890.1| HNF-3alpha [Mus musculus]
          Length = 468

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 267


>gi|157057168|ref|NP_032268.2| forkhead box protein D1 [Mus musculus]
 gi|341940705|sp|Q61345.2|FOXD1_MOUSE RecName: Full=Forkhead box protein D1; AltName: Full=Brain factor
           2; Short=BF-2; AltName: Full=Forkhead-related protein
           FKHL8; AltName: Full=Forkhead-related transcription
           factor 4; Short=FREAC-4; AltName: Full=HFH-BF-2
 gi|74205730|dbj|BAE21140.1| unnamed protein product [Mus musculus]
 gi|74206403|dbj|BAE24920.1| unnamed protein product [Mus musculus]
          Length = 456

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 130 KPPYSYIALITMAILQSPKKRLTLSEICEFISSRFPYYREKFPAWQNSIRHNLSLNDCFV 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 190 KIPREPGNPGKGNYWTLDPESADMFDNGS 218


>gi|603460|gb|AAC42042.1| transcription factor [Mus musculus]
          Length = 456

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 130 KPPYSYIALITMAILQSPKKRLTLSEICEFISSRFPYYREKFPAWQNSIRHNLSLNDCFV 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 190 KIPREPGNPGKGNYWTLDPESADMFDNGS 218


>gi|426398097|ref|XP_004065238.1| PREDICTED: forkhead box protein S1-like [Gorilla gorilla gorilla]
          Length = 233

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWT A   E   D+FENGNYRRRRR + P R
Sbjct: 92  KVPRSEGHEKGKGNYWTFAGGCESLLDLFENGNYRRRRRRRGPKR 136


>gi|185132786|ref|NP_001117001.1| fork head domain protein [Salmo salar]
 gi|3132705|gb|AAC16333.1| fork head domain protein [Salmo salar]
          Length = 324

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 74/117 (63%)

Query: 266 SSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYF 325
           S TS+  +  +  P   +    KPPYSY++LI MAI  +  K  TL EIY +I   FPY+
Sbjct: 12  SPTSLNRAKEVPKPYRRSLTHAKPPYSYISLITMAIQQSGSKMLTLNEIYQWIMDLFPYY 71

Query: 326 EKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
            +N++ WQNSIRH+LS NDCFVKVA+      KG+YW L     +MFENG Y RR++
Sbjct: 72  RENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPNSGNMFENGCYLRRQK 128


>gi|50345337|gb|AAT74646.1| forkhead [Ciona intestinalis]
          Length = 361

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|50345357|gb|AAT74656.1| forkhead [Ciona intestinalis]
 gi|50345361|gb|AAT74658.1| forkhead [Ciona intestinalis]
          Length = 362

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|50345355|gb|AAT74655.1| forkhead [Ciona intestinalis]
          Length = 362

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|18858699|ref|NP_571360.1| forkhead box protein B1 [Danio rerio]
 gi|326680384|ref|XP_003201510.1| PREDICTED: forkhead box protein B1-like isoform 1 [Danio rerio]
 gi|326680386|ref|XP_003201511.1| PREDICTED: forkhead box protein B1-like isoform 2 [Danio rerio]
 gi|2982343|gb|AAC06363.1| fork head domain protein FKD3 [Danio rerio]
 gi|34785125|gb|AAH56754.1| Foxb1.2 protein [Danio rerio]
 gi|42542436|gb|AAH66395.1| Forkhead box B1.2 [Danio rerio]
          Length = 297

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI +   K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 110


>gi|395842613|ref|XP_003794110.1| PREDICTED: forkhead box protein I2 [Otolemur garnettii]
          Length = 312

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +PPYSY ALIAMAI +   ++ TL++IY Y+A  FP++ ++K GWQNSIRHNLSLNDCF 
Sbjct: 97  RPPYSYSALIAMAIQSAPLQKLTLSQIYQYVAGNFPFYRRSKAGWQNSIRHNLSLNDCFK 156

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           KV ++     KGNYWTL    E MF+NGN+
Sbjct: 157 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNF 186


>gi|50345301|gb|AAT74628.1| forkhead [Ciona intestinalis]
 gi|50345303|gb|AAT74629.1| forkhead [Ciona intestinalis]
 gi|50345305|gb|AAT74630.1| forkhead [Ciona intestinalis]
 gi|50345311|gb|AAT74633.1| forkhead [Ciona intestinalis]
 gi|50345313|gb|AAT74634.1| forkhead [Ciona intestinalis]
 gi|50345315|gb|AAT74635.1| forkhead [Ciona intestinalis]
 gi|50345321|gb|AAT74638.1| forkhead [Ciona intestinalis]
 gi|50345329|gb|AAT74642.1| forkhead [Ciona intestinalis]
 gi|50345363|gb|AAT74659.1| forkhead [Ciona intestinalis]
          Length = 361

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|405963969|gb|EKC29500.1| Hepatocyte nuclear factor 3-beta [Crassostrea gigas]
          Length = 401

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  + +K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 137 KPPYSYISLITMAIQQSPNKMCTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL     +MFENG Y RR++
Sbjct: 197 KVPRTPDRPGKGSYWTLHPDSGNMFENGCYLRRQK 231


>gi|348504642|ref|XP_003439870.1| PREDICTED: forkhead box protein D2-like [Oreochromis niloticus]
          Length = 367

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 93  KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 152

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL     DMF+NG+
Sbjct: 153 KIPREPGNPGKGNYWTLDPDSADMFDNGS 181


>gi|50345307|gb|AAT74631.1| forkhead [Ciona intestinalis]
 gi|50345309|gb|AAT74632.1| forkhead [Ciona intestinalis]
 gi|50345325|gb|AAT74640.1| forkhead [Ciona intestinalis]
 gi|50345341|gb|AAT74648.1| forkhead [Ciona intestinalis]
 gi|50345347|gb|AAT74651.1| forkhead [Ciona intestinalis]
 gi|50345349|gb|AAT74652.1| forkhead [Ciona intestinalis]
          Length = 361

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|410908018|ref|XP_003967488.1| PREDICTED: forkhead box protein B1-like [Takifugu rubripes]
 gi|410908020|ref|XP_003967489.1| PREDICTED: forkhead box protein B1-like [Takifugu rubripes]
          Length = 313

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI +   K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPGCGDMFENGSFLRRRKRFK 110


>gi|18858705|ref|NP_571345.1| forkhead box D5 [Danio rerio]
 gi|2982353|gb|AAC06368.1| fork head domain protein FKD8 [Danio rerio]
          Length = 321

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 67/91 (73%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSY+ALI MAI  +  K+ TL+ I ++I+ KFPY+++    WQNSIRHNLSLNDC
Sbjct: 71  SVKPPYSYIALITMAILQSPMKKLTLSGICDFISNKFPYYKEKFPAWQNSIRHNLSLNDC 130

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           F+K+ +E     KGNYW+L    EDMF+NG+
Sbjct: 131 FIKIPREPGNPGKGNYWSLDPASEDMFDNGS 161


>gi|15706318|dbj|BAB68347.1| forkhead protein FoxD [Ciona savignyi]
          Length = 506

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 67/90 (74%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I ++I  +FPY+++    WQNSIRHNLSLNDCFV
Sbjct: 165 KPPYSYIALITMAILQSPDKKLTLSGICDFIMNRFPYYKEKFPAWQNSIRHNLSLNDCFV 224

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+A+E     KGNYW +  + EDMF+NG++
Sbjct: 225 KIAREPGNPGKGNYWAMDPEAEDMFDNGSF 254


>gi|354489944|ref|XP_003507120.1| PREDICTED: forkhead box protein I2-like [Cricetulus griseus]
          Length = 216

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWT A   E   D+FENGN+RRRRR + P R
Sbjct: 92  KVPRTEGHDKGKGNYWTFAGGCESLLDLFENGNFRRRRRRRGPKR 136


>gi|308486245|ref|XP_003105320.1| hypothetical protein CRE_21244 [Caenorhabditis remanei]
 gi|308256828|gb|EFP00781.1| hypothetical protein CRE_21244 [Caenorhabditis remanei]
          Length = 408

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 1/103 (0%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
           NKPPYSY++LI MAI  +  KR TL+E+YN+I   FPY+  +++ WQNSIRH+LS NDCF
Sbjct: 168 NKPPYSYISLITMAIEQSPVKRLTLSELYNWIMEIFPYYRNHQQKWQNSIRHSLSFNDCF 227

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVR 388
           VKV +      KG++WTL     +MFENG Y RR++R K   R
Sbjct: 228 VKVQRSPDKPGKGSFWTLHDLCGNMFENGCYLRRQKRFKLKER 270


>gi|149051277|gb|EDM03450.1| forkhead box A1 [Rattus norvegicus]
          Length = 468

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 267


>gi|50345317|gb|AAT74636.1| forkhead [Ciona intestinalis]
 gi|50345319|gb|AAT74637.1| forkhead [Ciona intestinalis]
 gi|50345331|gb|AAT74643.1| forkhead [Ciona intestinalis]
 gi|50345333|gb|AAT74644.1| forkhead [Ciona intestinalis]
          Length = 361

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|50345323|gb|AAT74639.1| forkhead [Ciona intestinalis]
 gi|50345327|gb|AAT74641.1| forkhead [Ciona intestinalis]
 gi|50345335|gb|AAT74645.1| forkhead [Ciona intestinalis]
 gi|50345339|gb|AAT74647.1| forkhead [Ciona intestinalis]
          Length = 361

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|322794985|gb|EFZ17841.1| hypothetical protein SINV_00076 [Solenopsis invicta]
          Length = 382

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 63/90 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I  +FPY+      WQNSIRHNLSLNDCF+
Sbjct: 130 KPPYSYIALITMAILQSPQKKLTLSGICEFIMSRFPYYHDKFPAWQNSIRHNLSLNDCFI 189

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +E     KGNYWTL    EDMF+NG++
Sbjct: 190 KIPREPGNPGKGNYWTLDPLAEDMFDNGSF 219


>gi|50345351|gb|AAT74653.1| forkhead [Ciona intestinalis]
 gi|50345353|gb|AAT74654.1| forkhead [Ciona intestinalis]
 gi|50345359|gb|AAT74657.1| forkhead [Ciona intestinalis]
 gi|50345365|gb|AAT74660.1| forkhead [Ciona intestinalis]
          Length = 362

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|329744539|ref|NP_001193251.1| forkhead box protein E3 [Bos taurus]
          Length = 315

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 64/90 (71%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMA+ +   +R TLA IY +I  +F ++  + + WQNSIRHNL+LNDCF
Sbjct: 70  GKPPYSYIALIAMALAHAPGRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCF 129

Query: 347 VKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           VKV +E     KGNYWTL     DMF+NG+
Sbjct: 130 VKVPREPGNPGKGNYWTLDPAAADMFDNGS 159


>gi|189236452|ref|XP_973691.2| PREDICTED: similar to sloppy-paired [Tribolium castaneum]
          Length = 265

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 261 PPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAV 320
           PP + S  + +      +   ++  + KPPYSY ALI MAI N+  KR TL  IY YI  
Sbjct: 52  PPLDCSQKAAESKETEGNGEKSSKPTEKPPYSYNALIMMAIRNSPEKRLTLNGIYEYIIR 111

Query: 321 KFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMF---ENGNY 377
            FPY+++NK+GWQNSIRHNLSLN CFVKV +      KGNYW L    ED+F     G  
Sbjct: 112 NFPYYKENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSAEDVFIGTSTGKL 171

Query: 378 RRRRRMKRPVRTPSYNAKPYLGDMY 402
           RRR       R  ++     LG  Y
Sbjct: 172 RRRSSAASRTRLAAFKRTIALGGFY 196


>gi|296484745|tpg|DAA26860.1| TPA: forkhead box B2-like [Bos taurus]
          Length = 278

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 14/147 (9%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P  ++    KPPYSY++L AMAI ++  K   L++IY +I  +FPY+ ++ + WQNS+RH
Sbjct: 4   PGKSSYSDQKPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYL 398
           NLS NDCF+K+ +      KG++W L     DMFENG++ RR       + P        
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPDCGDMFENGSFLRRXXXTSGFKHP-------- 115

Query: 399 GDMYAHQNLIGRD---IFSATASPFSS 422
              +A +N+IGRD   +  A   P +S
Sbjct: 116 ---FAIENIIGRDYKGVLQAGGLPLAS 139


>gi|392332527|ref|XP_003752609.1| PREDICTED: forkhead box protein I2-like [Rattus norvegicus]
 gi|392352352|ref|XP_001056413.2| PREDICTED: forkhead box protein I2-like [Rattus norvegicus]
          Length = 216

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 68/94 (72%), Gaps = 4/94 (4%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNY 377
           KV + EG  + KGNYWT A   E   D+FENGN+
Sbjct: 92  KVPRTEGHDKGKGNYWTFAGGCESLLDLFENGNF 125


>gi|426329567|ref|XP_004025810.1| PREDICTED: forkhead box protein D2 [Gorilla gorilla gorilla]
          Length = 613

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 245 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 304

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL  +  DMF+NG+
Sbjct: 305 KIPREPGNPGKGNYWTLDPESADMFDNGS 333


>gi|67678185|gb|AAH97095.1| Foxd5 protein [Danio rerio]
          Length = 321

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 67/91 (73%)

Query: 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
           S KPPYSY+ALI MAI  +  K+ TL+ I ++I+ KFPY+++    WQNSIRHNLSLNDC
Sbjct: 71  SVKPPYSYIALITMAILQSPMKKLTLSGICDFISNKFPYYKEKFPAWQNSIRHNLSLNDC 130

Query: 346 FVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           F+K+ +E     KGNYW+L    EDMF+NG+
Sbjct: 131 FIKIPREPGNPGKGNYWSLDPASEDMFDNGS 161


>gi|344237521|gb|EGV93624.1| Hepatocyte nuclear factor 3-alpha [Cricetulus griseus]
          Length = 434

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 137 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL     +MFENG Y RR++
Sbjct: 197 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQK 231


>gi|50345345|gb|AAT74650.1| forkhead [Ciona intestinalis]
          Length = 361

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|148230981|ref|NP_001079026.1| forkhead box protein D3-A [Xenopus laevis]
 gi|82247048|sp|Q9DEN4.1|FXD3A_XENLA RecName: Full=Forkhead box protein D3-A; Short=FoxD3-A;
           Short=FoxD3a; AltName: Full=Fork head domain-related
           protein 6; Short=FKH-6; Short=Forkhead protein 6;
           Short=xFD-6; Short=xFKH6
 gi|4107097|dbj|BAA36334.1| XFD-6 [Xenopus laevis]
 gi|10801038|emb|CAC12963.1| winged helix transcription factor [Xenopus laevis]
 gi|114107898|gb|AAI23273.1| Foxd3-A protein [Xenopus laevis]
          Length = 371

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 66/90 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 94  KPPYSYIALITMSILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 153

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +E     KGNYWTL  + EDMF+NG++
Sbjct: 154 KIPREPGNPGKGNYWTLDPQSEDMFDNGSF 183


>gi|50345367|gb|AAT74661.1| forkhead [Ciona intestinalis]
          Length = 362

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MA+ ++ +K  TL+EIYN+I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 131 KPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 190

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YW+L     +MFENG Y RR++R K
Sbjct: 191 KVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFK 228


>gi|238054001|ref|NP_001153921.1| forkhead box B1.2 [Oryzias latipes]
 gi|226441705|gb|ACO57455.1| forkhead box B1.2 [Oryzias latipes]
          Length = 313

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI +   K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPNCGDMFENGSFLRRRKRFK 110


>gi|42374841|gb|AAS13442.1| forkhead transcription factor [Nematostella vectensis]
          Length = 286

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 69/95 (72%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  + +K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 40  KPPYSYISLITMAIQQSPNKMLTLSEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 99

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL  +  +MFENG Y RR++
Sbjct: 100 KVPRSPDRPGKGSYWTLHPECGNMFENGCYLRRQK 134


>gi|253683466|ref|NP_001156634.1| forkhead box D1 [Oryzias latipes]
 gi|226441711|gb|ACO57458.1| forkhead box D1 [Oryzias latipes]
          Length = 355

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  KR TL+EI  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 83  KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 142

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL     DMF+NG+
Sbjct: 143 KIPREPGNPGKGNYWTLDPDSADMFDNGS 171


>gi|311737|emb|CAA50741.1| fkh-1 [Mus musculus]
          Length = 111

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 68/99 (68%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIRH
Sbjct: 1   PQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRH 60

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           NLSLN+CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 61  NLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 99


>gi|3283040|gb|AAC25103.1| forkhead-5 [Danio rerio]
 gi|51593394|gb|AAH78426.1| Foxb1.1 protein [Danio rerio]
          Length = 296

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 68/104 (65%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI +   K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|432119589|gb|ELK38545.1| Forkhead box protein C1 [Myotis davidii]
          Length = 290

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 67/93 (72%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIRHNLSLN+
Sbjct: 16  DMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNE 75

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 76  CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 108


>gi|194745150|ref|XP_001955055.1| GF16437 [Drosophila ananassae]
 gi|190628092|gb|EDV43616.1| GF16437 [Drosophila ananassae]
          Length = 491

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 191 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 250

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 251 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 285


>gi|33989441|gb|AAH56569.1| Foxa1 protein [Danio rerio]
 gi|41351097|gb|AAH65668.1| Foxa1 protein [Danio rerio]
          Length = 427

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 157 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 216

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTP 390
           KV++      KG+YWTL     +MFENG Y RR++R K   + P
Sbjct: 217 KVSRSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCDKKLP 260


>gi|345803919|ref|XP_852354.2| PREDICTED: hepatocyte nuclear factor 3-alpha [Canis lupus
           familiaris]
          Length = 750

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 170 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 229

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 230 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 267


>gi|28415642|dbj|BAC57420.1| forkhead protein [Ciona intestinalis]
          Length = 393

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 65/88 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI+MAI ++  ++ TL  IY +I  +FP++ +  K WQNSIRHNL+LNDCF+
Sbjct: 23  KPPYSYIALISMAIASSPERKLTLGHIYKFIMERFPFYREQNKKWQNSIRHNLTLNDCFI 82

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENG 375
           K+ +E     KGNYWTL    EDMF+NG
Sbjct: 83  KLPREPGKPGKGNYWTLDPAAEDMFDNG 110


>gi|118601056|ref|NP_001073010.1| forkhead transcription factor A [Strongylocentrotus purpuratus]
 gi|91983614|gb|ABE68834.1| forkhead transcription factor A [Strongylocentrotus purpuratus]
          Length = 440

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL++IY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 144 KPPYSYISLITMAIQQSPQKMVTLSDIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 203

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTPSYNAKPYLGD 400
           KV +      KG++WTL     +MFENG Y RR++R K P +     A+   GD
Sbjct: 204 KVPRTPDRPGKGSFWTLHPDAGNMFENGCYLRRQKRFKCPKKEAQRLAQKAAGD 257


>gi|312375901|gb|EFR23152.1| hypothetical protein AND_13431 [Anopheles darlingi]
          Length = 506

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           PS  T    KPPYSY++L AMAI ++  K   L++IY +I  +FPY+ KN + WQNS+RH
Sbjct: 49  PSRDTYGDQKPPYSYISLTAMAIWSSPDKMLPLSDIYKFITDRFPYYRKNTQRWQNSLRH 108

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN-YRRRRRMK 384
           NLS NDCF+KV +      KG YW L  +  DMFENG+  RRR+R K
Sbjct: 109 NLSFNDCFIKVPRRPDRPGKGAYWALHPQAFDMFENGSLLRRRKRFK 155


>gi|348500468|ref|XP_003437795.1| PREDICTED: forkhead box protein B1-like [Oreochromis niloticus]
          Length = 307

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI +   K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 110


>gi|118097734|ref|XP_425229.2| PREDICTED: forkhead box protein L1-like [Gallus gallus]
          Length = 252

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 4/94 (4%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   + TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPSNKVTLSGIYDFIMKKFPYYRSNQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNY 377
           KV + EG  + KGNYW+ AT  E   D+FENGNY
Sbjct: 92  KVPRTEGNEKGKGNYWSFATGCESMLDLFENGNY 125


>gi|91082603|ref|XP_968211.1| PREDICTED: similar to forkhead protein/ forkhead protein domain
           [Tribolium castaneum]
 gi|270015000|gb|EFA11448.1| hypothetical protein TcasGA2_TC013630 [Tribolium castaneum]
          Length = 326

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PPRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSEIYRFITDRFPYYRRNTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRP 386
           NLS NDCF+K+ +      KG +W L     DMFENG++ RRR+R K P
Sbjct: 64  NLSFNDCFIKIPRRPDRPGKGAFWALHPSALDMFENGSFLRRRKRFKLP 112


>gi|29170619|gb|AAO66455.1| forkhead7/foxa1 [Danio rerio]
          Length = 427

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 157 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 216

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTP 390
           KV++      KG+YWTL     +MFENG Y RR++R K   + P
Sbjct: 217 KVSRSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCDKKLP 260


>gi|156388873|ref|XP_001634717.1| predicted protein [Nematostella vectensis]
 gi|156221803|gb|EDO42654.1| predicted protein [Nematostella vectensis]
          Length = 98

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSYVALI+MAI  ++ ++ TL+ IY +I   FPY+  NK+GWQNSIRHNLSLN CFV
Sbjct: 3   KPPYSYVALISMAIKQSKGQKITLSGIYQFIIENFPYYRLNKRGWQNSIRHNLSLNKCFV 62

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           K+ +E +   KG YW L   +E+MFE+GN+
Sbjct: 63  KIPRERSDPGKGCYWALDPAYEEMFEDGNF 92


>gi|18959276|ref|NP_036316.1| forkhead box protein D4-like 1 [Homo sapiens]
 gi|27923782|sp|Q9NU39.1|FX4L1_HUMAN RecName: Full=Forkhead box protein D4-like 1; Short=FOXD4-like 1
 gi|24850428|gb|AAN64908.1| forkhead box D4 like 1 protein [Homo sapiens]
 gi|34596579|gb|AAQ76877.1| FOXD4-like 1 [Homo sapiens]
 gi|152001120|gb|AAI48649.1| FOXD4L1 protein [synthetic construct]
 gi|157170548|gb|AAI53202.1| Forkhead box D4-like 1 [synthetic construct]
 gi|193785040|dbj|BAG54193.1| unnamed protein product [Homo sapiens]
 gi|223459630|gb|AAI36429.1| FOXD4L1 protein [Homo sapiens]
          Length = 408

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  + HKR TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 107 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 166

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KG YW+L    +DMF+NG+
Sbjct: 167 KIPREPGHPGKGTYWSLDPASQDMFDNGS 195


>gi|195400204|ref|XP_002058708.1| fkh [Drosophila virilis]
 gi|194142268|gb|EDW58676.1| fkh [Drosophila virilis]
          Length = 502

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 198 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 257

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 258 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 292


>gi|354498270|ref|XP_003511238.1| PREDICTED: hepatocyte nuclear factor 3-alpha-like [Cricetulus
           griseus]
          Length = 453

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 156 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 215

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL     +MFENG Y RR++
Sbjct: 216 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQK 250


>gi|391338816|ref|XP_003743751.1| PREDICTED: silk gland factor 1-like [Metaseiulus occidentalis]
          Length = 392

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N+  K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 99  KPPYSYISLITMAIQNSTSKMLTLSEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 158

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVR 388
           KV +      KG++WTL     +MFENG Y RR++R K   R
Sbjct: 159 KVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKR 200


>gi|355689088|gb|AER98714.1| forkhead box C2 [Mustela putorius furo]
          Length = 123

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 67/98 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 26  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 85

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENG 375
           HNLSLN+CFVKV ++     KG+YWTL     +MFENG
Sbjct: 86  HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENG 123


>gi|351698415|gb|EHB01334.1| Forkhead box protein B1 [Heterocephalus glaber]
          Length = 325

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|402854473|ref|XP_003891893.1| PREDICTED: forkhead box protein E3 [Papio anubis]
          Length = 318

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMA+ +   +R TLA IY +I  +F ++  + + WQNSIRHNL+LNDCFV
Sbjct: 71  KPPYSYIALIAMALAHAPGRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCFV 130

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           KV +E     KGNYWTL     DMF+NG+
Sbjct: 131 KVPREPGNPGKGNYWTLDPAAADMFDNGS 159


>gi|307557325|gb|ADN52079.1| forkhead-like protein E1 [Tachyglossus aculeatus]
          Length = 337

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 65/91 (71%), Gaps = 1/91 (1%)

Query: 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCF 346
            KPPYSY+ALIAMAI +   ++ TL  IY +I  +FP++  N K WQNSIRHNL+LNDCF
Sbjct: 35  GKPPYSYIALIAMAIAHAPDRKLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCF 94

Query: 347 VKVAKEGAGE-RKGNYWTLATKHEDMFENGN 376
           +K+ +E  G   KGNYW L    EDMFE+G+
Sbjct: 95  IKIPREEPGRPGKGNYWALDPHAEDMFESGS 125


>gi|348511197|ref|XP_003443131.1| PREDICTED: forkhead box protein D3-A-like [Oreochromis niloticus]
          Length = 323

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 69/101 (68%)

Query: 276 ISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           + +P +    S KPPYSY+ALI MAI  +  KR TL+EI ++I+ +F Y+ +    WQNS
Sbjct: 62  LPAPKTKGPASVKPPYSYIALITMAILQSPKKRLTLSEICDFISHRFVYYREKFPAWQNS 121

Query: 336 IRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           IRHNLSLNDCFVK+ +E     KGNYWTL     DMFENG+
Sbjct: 122 IRHNLSLNDCFVKMPREPGNPGKGNYWTLDPNSSDMFENGS 162


>gi|432104825|gb|ELK31342.1| Forkhead box protein B1 [Myotis davidii]
          Length = 490

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 72/110 (65%), Gaps = 1/110 (0%)

Query: 276 ISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           +  P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS
Sbjct: 1   MPRPGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNS 60

Query: 336 IRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           +RHNLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 61  LRHNLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 110


>gi|114149301|sp|Q6LD29.2|FXA1A_XENLA RecName: Full=Forkhead box protein A1-A; Short=FoxA1a; AltName:
           Full=Fork head domain-related protein 7; Short=xFD-7;
           AltName: Full=Hepatocyte nuclear factor 3-alpha homolog
           A; Short=HNF3alpha homolog A; Short=xHNF3alpha-A
          Length = 429

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 159 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 218

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL     +MFENG Y RR++
Sbjct: 219 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQK 253


>gi|397523626|ref|XP_003831825.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 3-alpha
           [Pan paniscus]
          Length = 439

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+L  NDCFV
Sbjct: 137 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLXFNDCFV 196

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KVA+      KG+YWTL     +MFENG Y RR++R K
Sbjct: 197 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFK 234


>gi|383859670|ref|XP_003705315.1| PREDICTED: uncharacterized protein LOC100877136 [Megachile
           rotundata]
          Length = 358

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           PS  T    KPPYSY++L AMAI ++  K   LAEIY +IA +FPY+ K+ + WQNS+RH
Sbjct: 4   PSRDTYGDQKPPYSYISLTAMAIWSSRDKMLPLAEIYKFIADRFPYYRKDTRRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN-YRRRRRMK 384
           NLS NDCF+KV +      KG YW L      MFENG+  RRR+R K
Sbjct: 64  NLSFNDCFIKVPRGPHRPGKGAYWALHPAALSMFENGSLLRRRKRFK 110


>gi|348568398|ref|XP_003469985.1| PREDICTED: forkhead box protein L1-like [Cavia porcellus]
          Length = 222

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 68/94 (72%), Gaps = 4/94 (4%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 31  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 90

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNY 377
           KV + EG  + KGNYWT A   E   D+FENGN+
Sbjct: 91  KVPRTEGHDKGKGNYWTFAGGCESLLDLFENGNF 124


>gi|390481062|ref|XP_002764077.2| PREDICTED: forkhead box protein L1-like [Callithrix jacchus]
          Length = 233

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   + TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGKVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWT A   E   D+FENGNYRRRRR + P R
Sbjct: 92  KVPRTEGHEKGKGNYWTFAGGCESLLDLFENGNYRRRRRRRGPKR 136


>gi|307203212|gb|EFN82367.1| Fork head domain-containing protein FD4 [Harpegnathos saltator]
          Length = 427

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           PS  T    KPPYSY++L AMAI ++  K   LAEIY +IA +FPY+ K+ + WQNS+RH
Sbjct: 4   PSRDTYGDQKPPYSYISLTAMAIWSSRDKMLPLAEIYKFIADRFPYYRKDTRRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN-YRRRRRMK 384
           NLS NDCF+KV +      KG YW L      MFENG+  RRR+R K
Sbjct: 64  NLSFNDCFIKVPRGPHRPGKGAYWALHPAALSMFENGSLLRRRKRFK 110


>gi|355778084|gb|EHH63120.1| hypothetical protein EGM_16023 [Macaca fascicularis]
          Length = 201

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 110


>gi|357618423|gb|EHJ71407.1| fork head domain-containing protein FD4 [Danaus plexippus]
          Length = 256

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 73/110 (66%), Gaps = 1/110 (0%)

Query: 276 ISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNS 335
           +  P+  +    KPP+SY+AL AMAI ++  +   L+EIY +I  +FPY+ +N + WQNS
Sbjct: 1   MPRPTRESYGDQKPPFSYIALTAMAIWSSPERMLPLSEIYRFITDRFPYYRRNTQRWQNS 60

Query: 336 IRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN-YRRRRRMK 384
           +RHNLS NDCFVKV +      KG YWTL  +  DMFENG+  RRR+R K
Sbjct: 61  LRHNLSFNDCFVKVPRRPDRPGKGAYWTLHPQAFDMFENGSLLRRRKRFK 110


>gi|285157806|gb|ADC35038.1| forkhead box A [Themiste lageniformis]
          Length = 471

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 146 KPPYSYISLITMAIQQSPSKMCTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 205

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL     +MFENG Y RR++
Sbjct: 206 KVPRTPDRPGKGSYWTLHPDAGNMFENGCYLRRQK 240


>gi|195036268|ref|XP_001989593.1| GH18716 [Drosophila grimshawi]
 gi|193893789|gb|EDV92655.1| GH18716 [Drosophila grimshawi]
          Length = 492

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 188 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 247

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 248 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 282


>gi|34451549|gb|AAQ72339.1| FOXD4 [Gorilla gorilla]
          Length = 386

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 262 PDESSSTSIKVSSPISSPSST--TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIA 319
           P + S    K  +P  S +++       KPPYSY+ALI MAI  + HKR TL+ I  +I+
Sbjct: 80  PSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQSPHKRLTLSGICAFIS 139

Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
            +FPY+ +    WQNSI HNLSLNDCFVK+ +E     KGNYW+L    +DMF+NG+
Sbjct: 140 GRFPYYRRKFPAWQNSIHHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGS 196


>gi|91082601|ref|XP_968056.1| PREDICTED: similar to forkhead protein/ forkhead protein domain
           [Tribolium castaneum]
 gi|270015026|gb|EFA11474.1| hypothetical protein TcasGA2_TC014185 [Tribolium castaneum]
          Length = 241

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           PS  +    KPPYSY++L AMAI N+  K   L+EIY +I  +FPY+ KN + WQNS+RH
Sbjct: 4   PSRESYGDQKPPYSYISLTAMAIWNSPEKMLPLSEIYKFITDRFPYYRKNTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN-YRRRRRMK 384
           NLS NDCF+K+ +      KG YW L     DMFENG+  RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDRPGKGAYWALHPAAFDMFENGSLLRRRKRFK 110


>gi|195503549|ref|XP_002098696.1| GE10507 [Drosophila yakuba]
 gi|194184797|gb|EDW98408.1| GE10507 [Drosophila yakuba]
          Length = 509

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 209 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 268

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 269 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 303


>gi|194906935|ref|XP_001981453.1| GG12065 [Drosophila erecta]
 gi|190656091|gb|EDV53323.1| GG12065 [Drosophila erecta]
          Length = 511

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 211 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 270

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 271 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 305


>gi|156388131|ref|XP_001634555.1| predicted protein [Nematostella vectensis]
 gi|156221639|gb|EDO42492.1| predicted protein [Nematostella vectensis]
          Length = 286

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  + +K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 40  KPPYSYISLITMAIQQSPNKMLTLSEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 99

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL     +MFENG Y RR++
Sbjct: 100 KVPRSPDRPGKGSYWTLHPDCGNMFENGCYLRRQK 134


>gi|17738265|ref|NP_524542.1| fork head, isoform A [Drosophila melanogaster]
 gi|281362749|ref|NP_001163762.1| fork head, isoform B [Drosophila melanogaster]
 gi|120228|sp|P14734.1|FKH_DROME RecName: Full=Protein fork head
 gi|157434|gb|AAA28535.1| fork head protein [Drosophila melanogaster]
 gi|7301684|gb|AAF56798.1| fork head, isoform A [Drosophila melanogaster]
 gi|272477224|gb|ACZ95056.1| fork head, isoform B [Drosophila melanogaster]
          Length = 510

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 210 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 269

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 270 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 304


>gi|47214796|emb|CAF89623.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 366

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 120 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 179

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRT 389
           KV++      KG+YWTL     +MFENG Y RR++R K   +T
Sbjct: 180 KVSRSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCEKKT 222


>gi|344246734|gb|EGW02838.1| Dentin matrix protein 4 [Cricetulus griseus]
          Length = 776

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 592 RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 651

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWT A   E   D+FENGN+RRRRR + P R
Sbjct: 652 KVPRTEGHDKGKGNYWTFAGGCESLLDLFENGNFRRRRRRRGPKR 696


>gi|195451545|ref|XP_002072970.1| GK13405 [Drosophila willistoni]
 gi|194169055|gb|EDW83956.1| GK13405 [Drosophila willistoni]
          Length = 211

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 71/107 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  +   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PLKITYGDQKPPYSYISLTAMAIIHSPQRMLPLSEIYRFIIEQFPYYRRNTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR 385
           NLS NDCF+KV +      KG++WTL  K  DMFENG+  RRR+  R
Sbjct: 64  NLSFNDCFIKVPRNVTKSGKGSFWTLHPKAFDMFENGSLLRRRKRFR 110


>gi|289541363|gb|ADD09805.1| forkhead box A2 protein [Branchiostoma belcheri]
          Length = 261

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI M+I ++ +K  TLAEIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 69  KPPYSYISLITMSIQSSPNKMVTLAEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 128

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           KV +      KG+YWTL  +  +MFENG Y RR++R K
Sbjct: 129 KVPRTPDRPGKGSYWTLHPEAGNMFENGCYLRRQKRFK 166


>gi|195574515|ref|XP_002105234.1| GD18028 [Drosophila simulans]
 gi|194201161|gb|EDX14737.1| GD18028 [Drosophila simulans]
          Length = 510

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 210 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 269

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 270 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 304


>gi|195353058|ref|XP_002043027.1| GM16286 [Drosophila sechellia]
 gi|194127092|gb|EDW49135.1| GM16286 [Drosophila sechellia]
          Length = 505

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 205 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 264

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 265 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 299


>gi|78214236|gb|ABB36440.1| RE06859p [Drosophila melanogaster]
          Length = 510

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 210 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 269

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 270 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 304


>gi|338719536|ref|XP_003364019.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein B2-like [Equus
           caballus]
          Length = 300

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 85/144 (59%), Gaps = 11/144 (7%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P  ++    KPPYSY++L AMAI ++  K   L++IY +I  +FPY+ ++ + WQNS+RH
Sbjct: 4   PGKSSYSDQKPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRTP------- 390
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K   R P       
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPDCGDMFENGSFLRRRKRFKVAARGPHSPCTRE 123

Query: 391 ---SYNAKPYLGDMYAHQNLIGRD 411
              +  A+   GD++  Q  I RD
Sbjct: 124 APRAAPARGPGGDVHTPQLYIQRD 147


>gi|18858693|ref|NP_571358.1| forkhead box B1.1 [Danio rerio]
 gi|2982347|gb|AAC06365.1| fork head domain protein FKD5 [Danio rerio]
          Length = 299

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 67/104 (64%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY+ L AMAI +   K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYIPLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK 107


>gi|390178303|ref|XP_001358897.3| GA10002 [Drosophila pseudoobscura pseudoobscura]
 gi|388859398|gb|EAL28040.3| GA10002 [Drosophila pseudoobscura pseudoobscura]
          Length = 481

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 181 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 240

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 241 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 275


>gi|348517146|ref|XP_003446096.1| PREDICTED: forkhead box protein B2-like [Oreochromis niloticus]
          Length = 318

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 73/117 (62%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   +    KPPYSY++L AMAI N+  K   L++IY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGKNSYSDQKPPYSYISLTAMAIQNSTEKMLPLSDIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAK 395
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+  + +R      K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPDCGDMFENGSFLRRRKRFKVLRAEHMTCK 120


>gi|195110519|ref|XP_001999827.1| GI22864 [Drosophila mojavensis]
 gi|193916421|gb|EDW15288.1| GI22864 [Drosophila mojavensis]
          Length = 501

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 198 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 257

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 258 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 292


>gi|477361|pir||A48924 forkhead transcription activator homolog (clone FKH 5-3) - human
           (fragment)
          Length = 108

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCF 
Sbjct: 9   KPPYSYTALITMAIQQSPQKKLTLSGICQFISNRFPYYREKFPAWQNSIRHNLSLNDCFD 68

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           K+ +E A   KGNYWTL  + ++MF+NG++ RRR+R K
Sbjct: 69  KIPREPATRPKGNYWTLDPQSDEMFDNGSFLRRRKRFK 106


>gi|426379303|ref|XP_004056339.1| PREDICTED: forkhead box protein B1 [Gorilla gorilla gorilla]
          Length = 282

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   T    KPPYSY++L AMAI ++  K   L+EIY +I  +FPY+ +N + WQNS+RH
Sbjct: 4   PGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMK 384
           NLS NDCF+K+ +      KG++W L     DMFENG++ RRR+R K
Sbjct: 64  NLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK 110


>gi|395845672|ref|XP_003795549.1| PREDICTED: forkhead box protein I1-like [Otolemur garnettii]
          Length = 231

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           +P YSY+ALIAMAI  +   R TL+ IY++I  KFPY+  N++ WQNSIRHNLSLN CFV
Sbjct: 32  RPAYSYIALIAMAIQQSPAGRVTLSGIYDFIMRKFPYYRANQRAWQNSIRHNLSLNSCFV 91

Query: 348 KVAK-EGAGERKGNYWTLATKHE---DMFENGNYRRRRRMKRPVR 388
           KV + EG  + KGNYWT A   E   D+FENGNYRRRRR + P R
Sbjct: 92  KVPRTEGHEKGKGNYWTFAGGCESLLDLFENGNYRRRRRRRGPKR 136


>gi|10567295|dbj|BAB16116.1| hepatocyte nuclear factor 3 alpha [Mesocricetus auratus]
          Length = 277

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 149 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 208

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL     +MFENG Y RR++
Sbjct: 209 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQK 243


>gi|259013273|ref|NP_001158426.1| forkhead box A [Saccoglossus kowalevskii]
 gi|196475491|gb|ACG76356.1| forkhead box A protein [Saccoglossus kowalevskii]
          Length = 404

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 73/102 (71%), Gaps = 1/102 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI ++ +K  TL++IY +I   FP++ +N++ WQNSIRH+LS NDCF+
Sbjct: 127 KPPYSYISLITMAIQSSPNKMVTLSDIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFL 186

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVR 388
           KV +      KG++WTL     +MFENG Y RR++R K P R
Sbjct: 187 KVPRTPDRPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCPKR 228


>gi|410898710|ref|XP_003962840.1| PREDICTED: forkhead box protein A1-A-like [Takifugu rubripes]
          Length = 396

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 144 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 203

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRT 389
           KV++      KG+YWTL     +MFENG Y RR++R K   +T
Sbjct: 204 KVSRSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCEKKT 246


>gi|194908982|ref|XP_001981873.1| GG11360 [Drosophila erecta]
 gi|190656511|gb|EDV53743.1| GG11360 [Drosophila erecta]
          Length = 265

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 69/104 (66%)

Query: 282 TTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLS 341
            T    KPPYSY++L AMAI ++  +   L+EIY +I  +FPY+ KN + WQNS+RHNLS
Sbjct: 1   MTYGDQKPPYSYISLTAMAIIHSPQRLLPLSEIYRFIMDQFPYYRKNTQKWQNSLRHNLS 60

Query: 342 LNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR 385
            NDCF+KV +      KG+YWTL     DMFENG+  RRR+  R
Sbjct: 61  FNDCFIKVPRNVTKAGKGSYWTLHPMAFDMFENGSLLRRRKRFR 104


>gi|340726948|ref|XP_003401813.1| PREDICTED: hypothetical protein LOC100645267 [Bombus terrestris]
 gi|350421411|ref|XP_003492833.1| PREDICTED: hypothetical protein LOC100744463 [Bombus impatiens]
          Length = 365

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           PS  T    KPPYSY++L AMAI ++  K   LAEIY +IA +FPY+ K+ + WQNS+RH
Sbjct: 4   PSRDTYGDQKPPYSYISLTAMAIWSSRDKMLPLAEIYKFIADRFPYYRKDTRRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN-YRRRRRMK 384
           NLS NDCF+KV +      KG YW L      MFENG+  RRR+R K
Sbjct: 64  NLSFNDCFIKVPRGPHRPGKGAYWALHPAALSMFENGSLLRRRKRFK 110


>gi|347967916|ref|XP_003436136.1| AGAP013297-PA [Anopheles gambiae str. PEST]
 gi|333468245|gb|EGK96877.1| AGAP013297-PA [Anopheles gambiae str. PEST]
          Length = 436

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           PS  T    KPPYSY++L AMAI ++  K   L++IY +I  +FPY+ KN + WQNS+RH
Sbjct: 4   PSRDTYGDQKPPYSYISLTAMAIWSSPDKMLPLSDIYKFITDRFPYYRKNTQRWQNSLRH 63

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGN-YRRRRRMK 384
           NLS NDCF+KV +      KG YW L  +  DMFENG+  RRR+R K
Sbjct: 64  NLSFNDCFIKVPRRPDRPGKGAYWALHPQAFDMFENGSLLRRRKRFK 110


>gi|329805020|gb|AEC05342.1| FoxD3 [Paralichthys olivaceus]
          Length = 396

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI M+I  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 119 KPPYSYIALITMSILQSPQKKLTLSGICEFISSRFPYYREKFPAWQNSIRHNLSLNDCFV 178

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWTL    EDMF+NG+
Sbjct: 179 KIPREPGNPGKGNYWTLDPASEDMFDNGS 207


>gi|268578883|ref|XP_002644424.1| C. briggsae CBR-FKH-2 protein [Caenorhabditis briggsae]
          Length = 279

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 81/128 (63%), Gaps = 11/128 (8%)

Query: 263 DESSSTSIKVSSPISSPSSTTTD-------SNKPPYSYVALIAMAINNNEHKRATLAEIY 315
           + S STS K S    SP S ++D       ++KPP+SY ALI MAI N+  KR TLA IY
Sbjct: 72  ERSESTSSKDSK---SPCSNSSDDKKPSSPNDKPPFSYNALIMMAIKNSPEKRLTLAGIY 128

Query: 316 NYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTL-ATKHEDMFEN 374
           +YI   +P++  NK+GWQNSIRHNLSLN CFVKV +      KGNYW L AT  +++F  
Sbjct: 129 DYILTNYPFYRDNKQGWQNSIRHNLSLNKCFVKVPRNFDDPGKGNYWMLDATCEDEVFIG 188

Query: 375 GNYRRRRR 382
           G   + RR
Sbjct: 189 GATGKLRR 196


>gi|307190518|gb|EFN74515.1| Forkhead box protein D3-B [Camponotus floridanus]
          Length = 451

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 66/99 (66%)

Query: 279 PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRH 338
           P   ++   KPPYSY+ALI MAI  +  K+ TL+ I  +I  +FPY+      WQNSIRH
Sbjct: 184 PDKMSSSLIKPPYSYIALITMAILQSPQKKLTLSGICEFIMSRFPYYHDKFPAWQNSIRH 243

Query: 339 NLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           NLSLNDCF+K+ +E     KGNYWTL    EDMF+NG++
Sbjct: 244 NLSLNDCFIKIPREPGNPGKGNYWTLDPLAEDMFDNGSF 282


>gi|47222158|emb|CAG11584.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 347

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 68  KPPYSYIALITMAILQSPQKKLTLSGICEFISSRFPYYREKFPAWQNSIRHNLSLNDCFV 127

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWT+    EDMF+NG+
Sbjct: 128 KIPREPGNPGKGNYWTMDPASEDMFDNGS 156


>gi|30143280|gb|AAP15181.1| forkhead winged/helix transcription factor mutant 2 [Homo sapiens]
          Length = 553

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 68/100 (68%)

Query: 278 SPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
           +P     D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++  NK+GWQNSIR
Sbjct: 68  TPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIR 127

Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           HNLSLN+CFVKV ++     KG+YWTL     + FENG++
Sbjct: 128 HNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNKFENGSF 167


>gi|195445826|ref|XP_002070503.1| GK10997 [Drosophila willistoni]
 gi|194166588|gb|EDW81489.1| GK10997 [Drosophila willistoni]
          Length = 652

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI NN  +  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 179 KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 238

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +      KG++WTL     +MFENG Y RR++
Sbjct: 239 KIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQK 273


>gi|410921906|ref|XP_003974424.1| PREDICTED: forkhead box protein D3-A-like [Takifugu rubripes]
          Length = 394

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 115 KPPYSYIALITMAILQSPQKKLTLSGICEFISSRFPYYREKFPAWQNSIRHNLSLNDCFV 174

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           K+ +E     KGNYWT+    EDMF+NG+
Sbjct: 175 KIPREPGNPGKGNYWTMDPASEDMFDNGS 203


>gi|355710458|gb|EHH31922.1| Forkhead-related protein FKHL14 [Macaca mulatta]
          Length = 273

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLND 344
           D  KPPYSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+
Sbjct: 69  DLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNE 128

Query: 345 CFVKVAKEGAGERKGNYWTLATKHEDMFENGNY 377
           CFVKV ++     KG+YWTL     +MFENG++
Sbjct: 129 CFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 161


>gi|242022659|ref|XP_002431756.1| protein fork head, putative [Pediculus humanus corporis]
 gi|212517081|gb|EEB19018.1| protein fork head, putative [Pediculus humanus corporis]
          Length = 454

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 77/116 (66%), Gaps = 9/116 (7%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N+  K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 147 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 206

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR---------MKRPVRTPSYNA 394
           KV +      KG++WTL     +MFENG Y RR++         +++  ++PS+N 
Sbjct: 207 KVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKDEKKEAIRQSHKSPSHNG 262


>gi|11386197|ref|NP_036318.1| forkhead box protein E3 [Homo sapiens]
 gi|12644406|sp|Q13461.2|FOXE3_HUMAN RecName: Full=Forkhead box protein E3; AltName:
           Full=Forkhead-related protein FKHL12; AltName:
           Full=Forkhead-related transcription factor 8;
           Short=FREAC-8
 gi|9082291|gb|AAF82793.1|AF275722_1 forkhead transcription factor [Homo sapiens]
 gi|225000122|gb|AAI72358.1| Forkhead box E3 [synthetic construct]
          Length = 319

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALIAMA+ +   +R TLA IY +I  +F ++  + + WQNSIRHNL+LNDCFV
Sbjct: 71  KPPYSYIALIAMALAHAPGRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCFV 130

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
           KV +E     KGNYWTL     DMF+NG+
Sbjct: 131 KVPREPGNPGKGNYWTLDPAAADMFDNGS 159


>gi|327259381|ref|XP_003214516.1| PREDICTED: hepatocyte nuclear factor 3-alpha-like [Anolis
           carolinensis]
          Length = 532

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 67/95 (70%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI     K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 228 KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 287

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KVA+      KG+YWTL     +MFENG Y RR++
Sbjct: 288 KVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQK 322


>gi|339236645|ref|XP_003379877.1| hepatocyte nuclear factor 3-beta [Trichinella spiralis]
 gi|316977393|gb|EFV60502.1| hepatocyte nuclear factor 3-beta [Trichinella spiralis]
          Length = 537

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI  +  K  TL+EIY +I   FPY+ +N++ WQNSIRH+LS NDCFV
Sbjct: 158 KPPYSYISLITMAIQQSNSKMLTLSEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFV 217

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY-RRRRRMKRPVRT 389
           KV +      KG++WTL     +MFENG Y RR++R K   R+
Sbjct: 218 KVPRTPDKPGKGSFWTLHPDCGNMFENGCYLRRQKRFKCEKRS 260


>gi|383848763|ref|XP_003700017.1| PREDICTED: uncharacterized protein LOC100876229 [Megachile
           rotundata]
          Length = 508

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 68/95 (71%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY++LI MAI N   K  TL+EIY +I   FP++ +N++ WQNSIRH+LS NDCFV
Sbjct: 148 KPPYSYISLITMAIQNAPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 207

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG++WTL  +  +MFENG Y RR++
Sbjct: 208 KVPRTPDKPGKGSFWTLHPESGNMFENGCYLRRQK 242


>gi|312066162|ref|XP_003136139.1| winged helix transcription factor [Loa loa]
          Length = 284

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 67/93 (72%)

Query: 284 TDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLN 343
           + + KP YSY+ALIAMAI N+  K+ TL++I ++I  +F Y+ +    WQNSIRHNLSLN
Sbjct: 57  SGATKPAYSYIALIAMAILNSPDKKLTLSQICDFIINRFQYYREKFPAWQNSIRHNLSLN 116

Query: 344 DCFVKVAKEGAGERKGNYWTLATKHEDMFENGN 376
           DCFVK+ +E     KGNYW L  K EDMF+NG+
Sbjct: 117 DCFVKIPREPGNPGKGNYWALDPKAEDMFDNGS 149


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.309    0.127    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,050,771,488
Number of Sequences: 23463169
Number of extensions: 365624671
Number of successful extensions: 1983652
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5277
Number of HSP's successfully gapped in prelim test: 3714
Number of HSP's that attempted gapping in prelim test: 1877081
Number of HSP's gapped (non-prelim): 74629
length of query: 463
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 317
effective length of database: 8,933,572,693
effective search space: 2831942543681
effective search space used: 2831942543681
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 79 (35.0 bits)