Query psy8120
Match_columns 463
No_of_seqs 202 out of 837
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 19:08:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hdc_A Protein (transcription 100.0 4.3E-42 1.5E-46 290.6 4.4 96 287-382 1-96 (97)
2 1vtn_C HNF-3/FORK head DNA-rec 100.0 1.5E-41 5.3E-46 289.4 6.7 98 286-383 1-98 (102)
3 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 1.4E-41 4.8E-46 293.0 4.2 101 287-387 2-102 (109)
4 1kq8_A HFH-1, hepatocyte nucle 100.0 1.5E-41 5.1E-46 288.7 4.2 97 287-383 1-98 (100)
5 2c6y_A Forkhead box protein K2 100.0 4.5E-41 1.5E-45 290.5 5.2 100 283-382 11-110 (111)
6 3l2c_A Forkhead box protein O4 100.0 2.8E-36 9.6E-41 260.0 5.6 89 280-370 16-109 (110)
7 3coa_C Forkhead box protein O1 100.0 2.8E-36 9.5E-41 262.8 5.6 86 282-369 5-95 (117)
8 3bpy_A FORK head domain, forkh 100.0 7.6E-36 2.6E-40 246.9 5.5 79 285-365 2-85 (85)
9 1e17_A AFX; DNA binding domain 100.0 9E-36 3.1E-40 269.1 4.3 98 280-382 32-134 (150)
10 2a07_F Forkhead box protein P2 100.0 4.5E-36 1.5E-40 252.4 0.4 76 287-367 2-77 (93)
11 3g73_A Forkhead box protein M1 100.0 9.1E-35 3.1E-39 260.4 4.7 100 280-382 10-111 (142)
12 1uhm_A Histone H1, histone HHO 77.7 1.9 6.4E-05 34.4 3.6 33 292-324 6-39 (78)
13 1uss_A Histone H1; DNA binding 77.1 2.3 8E-05 34.8 4.1 33 292-324 9-42 (88)
14 1hst_A Histone H5; chromosomal 72.3 3.2 0.00011 34.3 3.7 56 292-351 9-68 (90)
15 1ust_A Histone H1; DNA binding 69.6 3.3 0.00011 34.4 3.2 33 292-324 9-42 (93)
16 2rqp_A Heterochromatin protein 69.4 2 7E-05 34.9 2.0 34 292-325 11-45 (88)
17 2lso_A Histone H1X; structural 52.0 4.2 0.00014 33.0 0.0 34 290-323 5-39 (83)
18 3rsn_A SET1/ASH2 histone methy 31.1 31 0.0011 32.0 3.2 65 286-350 64-144 (177)
19 4aw0_A HPDK1, 3-phosphoinositi 26.0 18 0.0006 35.2 0.7 39 293-334 261-301 (311)
20 2kpm_A Uncharacterized protein 23.5 2.1E+02 0.0072 24.3 6.8 58 293-353 22-84 (105)
21 1ghc_A GH1; chromosomal protei 22.2 11 0.00037 29.5 -1.4 30 292-321 5-35 (75)
No 1
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=4.3e-42 Score=290.62 Aligned_cols=96 Identities=56% Similarity=1.042 Sum_probs=92.7
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCcccccccccceeccCCceEeecccCCCCCCceeEeecC
Q psy8120 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLAT 366 (463)
Q Consensus 287 ~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNLSLNkcFvKVpR~g~~~GKG~yWtLdP 366 (463)
.||||||++||+|||++||+++|||+|||+||+++||||+.+.+|||||||||||||+||+||+|+.+++|||+||+|+|
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 49999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred ChhhhhhccccccccC
Q psy8120 367 KHEDMFENGNYRRRRR 382 (463)
Q Consensus 367 ~~e~~fe~g~~RrRRr 382 (463)
+++++|++|.++|||+
T Consensus 81 ~~~~~f~~g~~~rrr~ 96 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRRK 96 (97)
T ss_dssp THHHHHHHSCCCSSSC
T ss_pred CHHHHHhCCCccCCCC
Confidence 9999999999977765
No 2
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=1.5e-41 Score=289.44 Aligned_cols=98 Identities=53% Similarity=0.962 Sum_probs=93.6
Q ss_pred CCCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCcccccccccceeccCCceEeecccCCCCCCceeEeec
Q psy8120 286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLA 365 (463)
Q Consensus 286 ~~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNLSLNkcFvKVpR~g~~~GKG~yWtLd 365 (463)
..||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 36999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CChhhhhhccccccccCC
Q psy8120 366 TKHEDMFENGNYRRRRRM 383 (463)
Q Consensus 366 P~~e~~fe~g~~RrRRr~ 383 (463)
|+++++|++|.++|||++
T Consensus 81 p~~~~~f~~g~~~rr~~~ 98 (102)
T 1vtn_C 81 PSSGNMFENGCYLRRQKR 98 (102)
T ss_dssp GGGCSTTCSSCSSSCSSC
T ss_pred cCHHHHhhcCCeeccccc
Confidence 999999999998776654
No 3
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.4e-41 Score=292.99 Aligned_cols=101 Identities=53% Similarity=0.986 Sum_probs=90.4
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCcccccccccceeccCCceEeecccCCCCCCceeEeecC
Q psy8120 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLAT 366 (463)
Q Consensus 287 ~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNLSLNkcFvKVpR~g~~~GKG~yWtLdP 366 (463)
.||||||++||+|||++||+++|||+|||+||+++||||+.+.+|||||||||||||+||+||+|+.+++|||+||+|+|
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p 81 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred ChhhhhhccccccccCCCCCC
Q psy8120 367 KHEDMFENGNYRRRRRMKRPV 387 (463)
Q Consensus 367 ~~e~~fe~g~~RrRRr~krp~ 387 (463)
+++++|++|.++|||++.+.+
T Consensus 82 ~~~~~f~~g~~~Rrr~~~~~~ 102 (109)
T 2hfh_A 82 QSEDMFDNGSFLRRRKRFKRL 102 (109)
T ss_dssp TCCHHHHSSSCC---------
T ss_pred cHHHHHhCCCcccCccccccc
Confidence 999999999998888776543
No 4
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.5e-41 Score=288.67 Aligned_cols=97 Identities=54% Similarity=0.950 Sum_probs=72.3
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCcccccccccceeccCCceEeecccCCCC-CCceeEeec
Q psy8120 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGE-RKGNYWTLA 365 (463)
Q Consensus 287 ~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNLSLNkcFvKVpR~g~~~-GKG~yWtLd 365 (463)
.||||||++||+|||+++|+++|||+|||+||+++||||+.+.+|||||||||||||+||+||+|+.+++ |||+||+|+
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 4999999999999999999999999999999999999999999999999999999999999999987765 999999999
Q ss_pred CChhhhhhccccccccCC
Q psy8120 366 TKHEDMFENGNYRRRRRM 383 (463)
Q Consensus 366 P~~e~~fe~g~~RrRRr~ 383 (463)
|+++++|++|.+||||++
T Consensus 81 p~~~~~f~~g~~~rrr~r 98 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRRYR 98 (100)
T ss_dssp C-----------------
T ss_pred cCHHHHHhCCCcccCCCC
Confidence 999999999999877654
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=4.5e-41 Score=290.55 Aligned_cols=100 Identities=42% Similarity=0.775 Sum_probs=94.0
Q ss_pred CCCCCCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCcccccccccceeccCCceEeecccCCCCCCceeE
Q psy8120 283 TTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYW 362 (463)
Q Consensus 283 ~~~~~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNLSLNkcFvKVpR~g~~~GKG~yW 362 (463)
.....||||||++||+|||+++|+++|||+|||+||+++||||+.+.+|||||||||||||+||+||+|..+++|||+||
T Consensus 11 ~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W 90 (111)
T 2c6y_A 11 RGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFW 90 (111)
T ss_dssp ---CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred eecCChhhhhhccccccccC
Q psy8120 363 TLATKHEDMFENGNYRRRRR 382 (463)
Q Consensus 363 tLdP~~e~~fe~g~~RrRRr 382 (463)
+|+|+++++|++|.+||||+
T Consensus 91 ~l~p~~~~~~~~~~~r~rr~ 110 (111)
T 2c6y_A 91 RIDPASESKLIEQAFRKRRP 110 (111)
T ss_dssp EECHHHHHHHHHHHTCCCCC
T ss_pred EeChhHHHhhhcccccccCC
Confidence 99999999999999988765
No 6
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=2.8e-36 Score=260.04 Aligned_cols=89 Identities=38% Similarity=0.674 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccC-----cccccccccceeccCCceEeecccCC
Q psy8120 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKN-----KKGWQNSIRHNLSLNDCFVKVAKEGA 354 (463)
Q Consensus 280 ~~~~~~~~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~-----~kGWQNSIRHNLSLNkcFvKVpR~g~ 354 (463)
......+.||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+|+
T Consensus 16 ~~~~~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~-- 93 (110)
T 3l2c_A 16 KGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE-- 93 (110)
T ss_dssp ----CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--
T ss_pred CCccCCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCC--
Confidence 3345677899999999999999999999999999999999999999976 579999999999999999999985
Q ss_pred CCCCceeEeecCChhh
Q psy8120 355 GERKGNYWTLATKHED 370 (463)
Q Consensus 355 ~~GKG~yWtLdP~~e~ 370 (463)
++|||+||+|+|++++
T Consensus 94 ~~GKG~~W~l~p~~~~ 109 (110)
T 3l2c_A 94 ATGKSSWWMLNPEGGK 109 (110)
T ss_dssp STTCCCEEEEC-----
T ss_pred CCCCCceEEECccccC
Confidence 4789999999999864
No 7
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=2.8e-36 Score=262.80 Aligned_cols=86 Identities=38% Similarity=0.728 Sum_probs=76.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCc-----ccccccccceeccCCceEeecccCCCC
Q psy8120 282 TTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNK-----KGWQNSIRHNLSLNDCFVKVAKEGAGE 356 (463)
Q Consensus 282 ~~~~~~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~-----kGWQNSIRHNLSLNkcFvKVpR~g~~~ 356 (463)
....+.||||||++||+|||+++|+++|||+|||+||+++||||+.+. .|||||||||||||+||+||+++ ++
T Consensus 5 ~s~~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~~--~~ 82 (117)
T 3coa_C 5 SSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNE--GT 82 (117)
T ss_dssp --CCBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECCS--ST
T ss_pred cCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccccC--CC
Confidence 345778999999999999999999999999999999999999999875 79999999999999999999985 46
Q ss_pred CCceeEeecCChh
Q psy8120 357 RKGNYWTLATKHE 369 (463)
Q Consensus 357 GKG~yWtLdP~~e 369 (463)
|||+||+|+|++.
T Consensus 83 GKg~~W~l~p~~~ 95 (117)
T 3coa_C 83 GKSSWWMLNPEGG 95 (117)
T ss_dssp TCCCEEEECC---
T ss_pred CCcceEEECcccc
Confidence 8999999999875
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=246.93 Aligned_cols=79 Identities=43% Similarity=0.758 Sum_probs=74.2
Q ss_pred CCCCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccC-----cccccccccceeccCCceEeecccCCCCCCc
Q psy8120 285 DSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKN-----KKGWQNSIRHNLSLNDCFVKVAKEGAGERKG 359 (463)
Q Consensus 285 ~~~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~-----~kGWQNSIRHNLSLNkcFvKVpR~g~~~GKG 359 (463)
.+.||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+|+ ++|||
T Consensus 2 rn~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~--~~GKg 79 (85)
T 3bpy_A 2 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE--ATGKS 79 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--STTCC
T ss_pred CCCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCC--CCCCC
Confidence 46799999999999999999999999999999999999999976 469999999999999999999985 57899
Q ss_pred eeEeec
Q psy8120 360 NYWTLA 365 (463)
Q Consensus 360 ~yWtLd 365 (463)
+||+||
T Consensus 80 ~~W~ld 85 (85)
T 3bpy_A 80 SWWMLN 85 (85)
T ss_dssp CEEEEC
T ss_pred CceecC
Confidence 999996
No 9
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=9e-36 Score=269.14 Aligned_cols=98 Identities=39% Similarity=0.676 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccC-----cccccccccceeccCCceEeecccCC
Q psy8120 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKN-----KKGWQNSIRHNLSLNDCFVKVAKEGA 354 (463)
Q Consensus 280 ~~~~~~~~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~-----~kGWQNSIRHNLSLNkcFvKVpR~g~ 354 (463)
+.....+.||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+|+
T Consensus 32 ~~~~~rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r~-- 109 (150)
T 1e17_A 32 KGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE-- 109 (150)
T ss_dssp ---CCCCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECCT--
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCCC--
Confidence 3455677899999999999999999999999999999999999999975 489999999999999999999994
Q ss_pred CCCCceeEeecCChhhhhhccccccccC
Q psy8120 355 GERKGNYWTLATKHEDMFENGNYRRRRR 382 (463)
Q Consensus 355 ~~GKG~yWtLdP~~e~~fe~g~~RrRRr 382 (463)
++|||+||+|+|+++. .|..+|||+
T Consensus 110 ~~GKG~~W~ldp~~~~---~gk~~Rrr~ 134 (150)
T 1e17_A 110 ATGKSSWWMLNPEGGK---SGKAPRRRA 134 (150)
T ss_dssp TTSSSCEEEECTTCC-------------
T ss_pred CCCCcceEEECccccc---CCccccccc
Confidence 5789999999998753 344444433
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=4.5e-36 Score=252.44 Aligned_cols=76 Identities=42% Similarity=0.885 Sum_probs=73.2
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCcccccccccceeccCCceEeecccCCCCCCceeEeecC
Q psy8120 287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLAT 366 (463)
Q Consensus 287 ~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNLSLNkcFvKVpR~g~~~GKG~yWtLdP 366 (463)
.||||||++||+|||+++|+++|||+|||+||+++||||+.+.+|||||||||||||+||+||++ |||+||+|++
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~ 76 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE 76 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEECh
Confidence 69999999999999999999999999999999999999999999999999999999999999974 5999999997
Q ss_pred C
Q psy8120 367 K 367 (463)
Q Consensus 367 ~ 367 (463)
+
T Consensus 77 ~ 77 (93)
T 2a07_F 77 V 77 (93)
T ss_dssp H
T ss_pred H
Confidence 5
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.1e-35 Score=260.45 Aligned_cols=100 Identities=42% Similarity=0.779 Sum_probs=81.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCcccc-CcccccccccceeccCCceEeecccCCCCCC
Q psy8120 280 SSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEK-NKKGWQNSIRHNLSLNDCFVKVAKEGAGERK 358 (463)
Q Consensus 280 ~~~~~~~~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~-~~kGWQNSIRHNLSLNkcFvKVpR~g~~~GK 358 (463)
+......+||||||++||+|||+++++++|||+|||+||+++||||+. +..|||||||||||||+||+|+. +++||
T Consensus 10 s~~~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~---~~~GK 86 (142)
T 3g73_A 10 SWQNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET---SANGK 86 (142)
T ss_dssp ----CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE---CTTSC
T ss_pred CCCccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC---CCCCC
Confidence 344567889999999999999999999999999999999999999998 89999999999999999999874 35789
Q ss_pred ceeEeecCChhhhh-hccccccccC
Q psy8120 359 GNYWTLATKHEDMF-ENGNYRRRRR 382 (463)
Q Consensus 359 G~yWtLdP~~e~~f-e~g~~RrRRr 382 (463)
|+||+|+|+++..+ ..+.+|+++.
T Consensus 87 g~~W~i~p~~~~~l~~d~~~k~~~~ 111 (142)
T 3g73_A 87 VSFWTIHPSANRYLTLDQVFKPLDP 111 (142)
T ss_dssp CEEEEECTTTCCCCCCC--------
T ss_pred CceEEECccccccchhhhhhccccC
Confidence 99999999997643 5566665443
No 12
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=77.70 E-value=1.9 Score=34.43 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=28.5
Q ss_pred cHHHHHHHHHhc-CCCCCcCHHHHHHHHHhcCCc
Q psy8120 292 SYVALIAMAINN-NEHKRATLAEIYNYIAVKFPY 324 (463)
Q Consensus 292 SYaaLIamAI~s-SP~krLTLsEIYewI~~~FPY 324 (463)
+|..||..||.. .+.+..++..|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 599999999997 455579999999999999774
No 13
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=77.11 E-value=2.3 Score=34.78 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=28.2
Q ss_pred cHHHHHHHHHhcC-CCCCcCHHHHHHHHHhcCCc
Q psy8120 292 SYVALIAMAINNN-EHKRATLAEIYNYIAVKFPY 324 (463)
Q Consensus 292 SYaaLIamAI~sS-P~krLTLsEIYewI~~~FPY 324 (463)
+|..||..||... ..+..+++.|..||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSS 42 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 5899999999985 44579999999999999763
No 14
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=72.30 E-value=3.2 Score=34.28 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=38.2
Q ss_pred cHHHHHHHHHhcCC-CCCcCHHHHHHHHHhcCCccccCccccccccccee---ccCCceEeecc
Q psy8120 292 SYVALIAMAINNNE-HKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNL---SLNDCFVKVAK 351 (463)
Q Consensus 292 SYaaLIamAI~sSP-~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNL---SLNkcFvKVpR 351 (463)
+|..||..||.... .+..++..|-.||+.+|+. . .....-+++.| .-+..|+++..
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~-~---~~~~~~l~~aLk~~v~~G~l~q~Kg 68 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKV-G---HNADLQIKLSIRRLLAAGVLKQTKG 68 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCC-C---TTHHHHHHHHHHHHHHTTSEEEECC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccC-c---hhHHHHHHHHHHHHHHcCCeeeecC
Confidence 58999999999854 4479999999999999763 1 11222333332 24667777653
No 15
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=69.61 E-value=3.3 Score=34.41 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=28.3
Q ss_pred cHHHHHHHHHhcC-CCCCcCHHHHHHHHHhcCCc
Q psy8120 292 SYVALIAMAINNN-EHKRATLAEIYNYIAVKFPY 324 (463)
Q Consensus 292 SYaaLIamAI~sS-P~krLTLsEIYewI~~~FPY 324 (463)
+|..||..||... ..+..+++.|-.||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 42 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCC
Confidence 5899999999985 44579999999999999763
No 16
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=69.44 E-value=2 Score=34.95 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=28.8
Q ss_pred cHHHHHHHHHhcC-CCCCcCHHHHHHHHHhcCCcc
Q psy8120 292 SYVALIAMAINNN-EHKRATLAEIYNYIAVKFPYF 325 (463)
Q Consensus 292 SYaaLIamAI~sS-P~krLTLsEIYewI~~~FPYY 325 (463)
+|..||..||... +.+..++..|..||+.+|+-+
T Consensus 11 ~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~ 45 (88)
T 2rqp_A 11 KMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSL 45 (88)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCC
Confidence 5899999999973 455799999999999998843
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=52.02 E-value=4.2 Score=33.02 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHhcC-CCCCcCHHHHHHHHHhcCC
Q psy8120 290 PYSYVALIAMAINNN-EHKRATLAEIYNYIAVKFP 323 (463)
Q Consensus 290 PySYaaLIamAI~sS-P~krLTLsEIYewI~~~FP 323 (463)
|-+|..||..||... ..+.-++..|..+|..++.
T Consensus 5 ~~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 5 PGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 348999999999974 4456889999999998874
No 18
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=31.10 E-value=31 Score=32.04 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=50.0
Q ss_pred CCCCCCcHHHHHHHHHhc----------CCCCCcCHH-HHHHHHHhcCCccc----cCcccccccccceeccC-CceEee
Q psy8120 286 SNKPPYSYVALIAMAINN----------NEHKRATLA-EIYNYIAVKFPYFE----KNKKGWQNSIRHNLSLN-DCFVKV 349 (463)
Q Consensus 286 ~~KPPySYaaLIamAI~s----------SP~krLTLs-EIYewI~~~FPYYR----~~~kGWQNSIRHNLSLN-kcFvKV 349 (463)
..|=+.++..|+..||.+ .+.+-..+. ||.-||.++|-..- ..+..|+..|--.|+-+ ..|+.-
T Consensus 64 f~R~~~~w~~v~~laLyNL~~~~~~~~~~~k~yF~~~~dIipfI~~nWe~L~~~~r~~k~~W~~ti~~aLs~~~~~F~~~ 143 (177)
T 3rsn_A 64 FLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVK 143 (177)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHHHHCSSCCSCEETTTTHHHHHHHTGGGTCCCCCCSCCSGGGTHHHHHHTCTTTEEEE
T ss_pred eEeccCCHHHHHHHHHHhhhhhhhhcccCccccccccchHHHHHHHHHHHhcCCCccccccHHHHHHHHHhcCCceEEec
Confidence 456678899998888766 244556666 99999999999874 35579999999999964 488754
Q ss_pred c
Q psy8120 350 A 350 (463)
Q Consensus 350 p 350 (463)
.
T Consensus 144 ~ 144 (177)
T 3rsn_A 144 E 144 (177)
T ss_dssp S
T ss_pred c
Confidence 3
No 19
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=25.99 E-value=18 Score=35.19 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCCcCHHHH--HHHHHhcCCccccCcccccc
Q psy8120 293 YVALIAMAINNNEHKRATLAEI--YNYIAVKFPYFEKNKKGWQN 334 (463)
Q Consensus 293 YaaLIamAI~sSP~krLTLsEI--YewI~~~FPYYR~~~kGWQN 334 (463)
-..||...|.-.|.+|+|..|+ +.||.+ -|||+.- .|++
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~-Hp~F~~i--dw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKA-HPFFESV--TWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHT-SGGGTTC--CCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHC-CCCcCCC--CHHH
Confidence 4689999999999999999998 678865 4999753 4753
No 20
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=23.51 E-value=2.1e+02 Score=24.31 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=39.8
Q ss_pred HHHHHHHHHhc--CCCCCcCHHHHHHHHHhcCCcccc---CcccccccccceeccCCceEeecccC
Q psy8120 293 YVALIAMAINN--NEHKRATLAEIYNYIAVKFPYFEK---NKKGWQNSIRHNLSLNDCFVKVAKEG 353 (463)
Q Consensus 293 YaaLIamAI~s--SP~krLTLsEIYewI~~~FPYYR~---~~kGWQNSIRHNLSLNkcFvKVpR~g 353 (463)
-..||..||.. ..++-..|.+|-.+|.+.+|=|.. .-+.|..=|+-. -+.|.-..|..
T Consensus 22 l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdFDpRnYGy~kLs~Li~a~---~~~FEi~~r~~ 84 (105)
T 2kpm_A 22 PRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRLYGYKKLSDLVKAR---TDLFVTEERQV 84 (105)
T ss_dssp CHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTCCGGGTTCSSHHHHHHHC---TTTEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCCCccccCcccHHHHHHhh---CCcEEEEeecC
Confidence 46899999986 457889999999999999999964 334444433311 34566444443
No 21
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=22.20 E-value=11 Score=29.45 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=25.6
Q ss_pred cHHHHHHHHHhcC-CCCCcCHHHHHHHHHhc
Q psy8120 292 SYVALIAMAINNN-EHKRATLAEIYNYIAVK 321 (463)
Q Consensus 292 SYaaLIamAI~sS-P~krLTLsEIYewI~~~ 321 (463)
+|..||..||... ..+..++.-|..||+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 4899999999985 44568899999999988
Done!