RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8120
(463 letters)
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain.
Length = 96
Score = 146 bits (370), Expect = 6e-43
Identities = 56/95 (58%), Positives = 70/95 (73%)
Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
KPPYSY+ALI MAI + K TL+EIY +I FPY+ +NK+GWQNSIRHNLSLN CF+
Sbjct: 1 KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60
Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
KV + KG+YWTL + E+MFENG Y +RR+
Sbjct: 61 KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRK 95
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix". FH is
named for the Drosophila fork head protein, a
transcription factor which promotes terminal rather than
segmental development. This family of transcription
factor domains, which bind to B-DNA as monomers, are
also found in the Hepatocyte nuclear factor (HNF)
proteins, which provide tissue-specific gene regulation.
The structure contains 2 flexible loops or "wings" in
the C-terminal region, hence the term winged helix.
Length = 78
Score = 143 bits (363), Expect = 4e-42
Identities = 50/77 (64%), Positives = 57/77 (74%)
Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
KPPYSY ALIAMAI ++ KR TL+EIY +I+ FPYF GWQNSIRHNLSLN CFV
Sbjct: 1 KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFV 60
Query: 348 KVAKEGAGERKGNYWTL 364
KV +E KG+YWTL
Sbjct: 61 KVPREPDEPGKGSYWTL 77
>gnl|CDD|214627 smart00339, FH, FORKHEAD. FORKHEAD, also known as a "winged
helix".
Length = 89
Score = 141 bits (359), Expect = 2e-41
Identities = 59/89 (66%), Positives = 70/89 (78%)
Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
KPPYSY+ALIAMAI ++ KR TL+EIY +I FPY+ +N+ GWQNSIRHNLSLNDCFV
Sbjct: 1 KPPYSYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFV 60
Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGN 376
KV +EG KG+YWTL E+MFENGN
Sbjct: 61 KVPREGDRPGKGSYWTLDPAAENMFENGN 89
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family
[Transcription].
Length = 610
Score = 75.2 bits (185), Expect = 2e-14
Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 15/244 (6%)
Query: 149 TMTVPLTGEEGGETFTVSYNVYNTKLNGDVSQPSDILRQAF-----ADLDITPDQSAGRT 203
+T T S N N + D+ + S ++R D+ + S T
Sbjct: 195 KITYSSTHSMPLLESNDSLNSNNERELLDIIKSSALIRIPADSSSNLDVSLGHHISQPST 254
Query: 204 TSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPR---NKKTKVSQKNSSSQPSSSSP 260
+ ++ N ++ I N++ Q P P ++ N + K+ + S SSP
Sbjct: 255 HTPVLDNHSSGEENISRINNSSQIDSPTPNYRMSSIDSSVNPSRLANNKDEGRKGSKSSP 314
Query: 261 PPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAV 320
P +++ S S +S+ + T+ KP +SY I AI ++ + TL+EIY++I+
Sbjct: 315 VPKDAAPPS--TLSDLSADVNRTS---KPAFSYANSITQAILSSPSGKMTLSEIYSWISS 369
Query: 321 KFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRR 380
PY+ WQNSIRHNLSLN F KV + + KG +W + + ++E + R
Sbjct: 370 NLPYYRHKPTAWQNSIRHNLSLNKSFEKVPRSASQPGKGCFWKI--DYSYIYEKESKRNP 427
Query: 381 RRMK 384
R K
Sbjct: 428 RSPK 431
Score = 68.3 bits (167), Expect = 3e-12
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 228 KKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSS------ 281
K+ P+++ T + K+ ++ K+ + SSP S S S S
Sbjct: 16 KQMIPKKSITVSKLKEVVINGKSHNVSSVLSSPKAPTRVSLDYSNSLNRSVGSEEIQAYA 75
Query: 282 ----TTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIR 337
+ PPYSY +AI N+ K TL++IY +I F Y+ K WQNSIR
Sbjct: 76 KLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIR 135
Query: 338 HNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFE 373
HNLSLND F+K+ + KG++W++ HE F
Sbjct: 136 HNLSLNDAFIKIEGRNGAKVKGHFWSIGPGHETQFL 171
>gnl|CDD|219833 pfam08418, Pol_alpha_B_N, DNA polymerase alpha subunit B
N-terminal. This is the eukaryotic DNA polymerase alpha
subunit B N-terminal domain which is involved in complex
formation. Also see pfam04058.
Length = 239
Score = 38.1 bits (89), Expect = 0.006
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 198 QSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSS-SQPS 256
A TS + PE ++ +L + +K +TP K K S SS PS
Sbjct: 68 TPASIKTSKRLIEVPEAEESLLDSYTTPSDKGG-MLRILSTPELPKRKRSFSASSLESPS 126
Query: 257 SSSPPPDESSSTSIKVSSPISSPSSTTTDSNK 288
P S S + SP S+ S+ ++ +
Sbjct: 127 LFFSPASFSPSAAPSTPSPNSAKFSSRSNPGE 158
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 37.2 bits (86), Expect = 0.018
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 214 PKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVS 273
P+ IL E S+ + + P+P +++ P ++K K S++N +PPPD +S TS
Sbjct: 7 PRNAILRETSSGEEQSPNPSSHKSKPSSRKLKSSKEN--------APPPDLNSLTSDL-- 56
Query: 274 SPISSPSSTTTDSNKPP 290
P +S S PP
Sbjct: 57 KPDHRSASAKLKSPLPP 73
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 35.0 bits (80), Expect = 0.059
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 235 NQTTPRNKKTKVSQKNSSS-QPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNK 288
N TTP + K + Q S + + P+ ++ S KV +P +P++TT S K
Sbjct: 29 NATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTK 83
Score = 29.2 bits (65), Expect = 4.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 244 TKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNK 288
T +Q +++ PSS+ +S+ S KV +P S P++TT S K
Sbjct: 22 TTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTK 66
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 35.9 bits (82), Expect = 0.059
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 235 NQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYV 294
T K ++ +SS P++++P P SSS+S S +SP N ++
Sbjct: 1215 GTNTFTFKAAQLQLSAASSPPAATTPTPPPSSSSSSSAQSISTSPGQIQIVLNGSTTIHI 1274
Query: 295 ALI 297
+
Sbjct: 1275 NFL 1277
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 33.2 bits (76), Expect = 0.26
Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 189 FADLDITPDQSAGRTTSVIISNSPEPKQQILG-----ENSNVQN--KKPDPQENQTTPRN 241
L + +S E + IL E S KKP TPRN
Sbjct: 5 LDSLPDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRN 64
Query: 242 KKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPP 290
K SS+ S P S+ S + S P S ST ++ + P
Sbjct: 65 PKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEP 113
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 33.4 bits (76), Expect = 0.29
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 224 NVQNKKPDP-QENQTTP--RNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPS 280
N ++K P +N TTP NKK K + +SSS SSS S+ + S +S+
Sbjct: 95 NERSKTPIKNNDNVTTPIKANKKEKHNLDSSSSSSISSSLTNISFFSSPTSIYSCLSNSL 154
Query: 281 STTTDSNKPPYSYVALIAMAINNNEHK 307
S+ + + ++ +N+
Sbjct: 155 SSKHSPKVIKENQSTHVNISSDNSPRN 181
>gnl|CDD|179334 PRK01770, PRK01770, sec-independent translocase; Provisional.
Length = 171
Score = 31.7 bits (72), Expect = 0.45
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 198 QSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSS 257
Q+A +N PE N K + TP +T Q +S Q
Sbjct: 87 QAAESMKRSYAANDPEKASDEAHTIHNPVVKDNEAAHEGVTPAAAQT---QASSPEQKPE 143
Query: 258 SSPPPDESSSTSIKVSSPISSPSSTTT 284
++P P + + + SPSS+
Sbjct: 144 TTPEPVVKPAADAEPKTAAPSPSSSDK 170
>gnl|CDD|218825 pfam05956, APC_basic, APC basic domain. This region of the APC
family of proteins is known as the basic domain. It
contains a high proportion of positively charged amino
acids and interacts with microtubules.
Length = 359
Score = 32.0 bits (72), Expect = 0.65
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 228 KKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSN 287
K P P + ++ ++ K S+ S P S+ PP + T SS S+PS
Sbjct: 39 KSPSPGQQRSRSLHRPAKPSELAELSPPPRSATPPARLAKTPSSSSSQTSTPSQPLPRPL 98
Query: 288 KPPYS 292
P
Sbjct: 99 PRPTQ 103
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 32.5 bits (74), Expect = 0.68
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
Query: 177 DVSQPSDILRQAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQ 236
S S+ + + P T P + N + +P P +
Sbjct: 237 SDSSSSESSGCGWGPENECPLPRPAPITL--------PTRIWEASGWNGPSSRPGPASSS 288
Query: 237 TTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYS 292
++PR + S + S P+ SSP SSS+S + SS +S SS ++
Sbjct: 289 SSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPG 344
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 31.7 bits (72), Expect = 0.92
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 210 NSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTS 269
+ Q + NS++ + P+ ++ + + + + SS + +
Sbjct: 118 SLTTLIQNLFNLNSDI-SDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKA 176
Query: 270 IKVSSPISSPSSTTTDSNKP 289
++ S S+ +S KP
Sbjct: 177 PSSNNTKPSTSNKQPNSPKP 196
Score = 29.0 bits (65), Expect = 6.0
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 2/100 (2%)
Query: 193 DITPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSS 252
+ + + S + Q ++ K P + + NK+ +
Sbjct: 140 RNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQP 199
Query: 253 SQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYS 292
+Q +S + ++ S S S + DS YS
Sbjct: 200 NQSNSQPAS--DDTANQKSSSKDNQSMSDSALDSILDQYS 237
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 31.8 bits (72), Expect = 0.96
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 208 ISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSP------- 260
S + K Q + N NK + + + S + S S SS
Sbjct: 279 HSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNR 338
Query: 261 PPDESSSTSIKVSSPISSPSSTTTDSNKPP 290
SS S ++ S PSS+ +D+
Sbjct: 339 NKSNSSPKSHSSANG-SVPSSSVSDNESKQ 367
>gnl|CDD|145910 pfam03012, PP_M1, Phosphoprotein. This family includes the M1
phosphoprotein non-structural RNA polymerase alpha
subunit, which is thought to be a component of the
active polymerase, and may be involved in template
binding.
Length = 298
Score = 31.2 bits (71), Expect = 0.99
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 247 SQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEH 306
S ++ S+Q P SS +K SS + +++ PP + + N+E
Sbjct: 140 STEDKSTQTDPEKSKPASQSSAPVKKEEQSSSEKVDSQEASGPP-----ALEWSATNDED 194
Query: 307 KRATLAEIYNYIA------VKFP 323
+ AEI + IA KFP
Sbjct: 195 DASVEAEIAHQIAESFSKKYKFP 217
>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
Length = 486
Score = 30.7 bits (69), Expect = 1.7
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 199 SAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSS 258
++G +TS I NS ++ + + + T + T + S++Q S
Sbjct: 25 ASGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQ- 83
Query: 259 SPPPDESSSTSIKVSSPISSPSSTTTDSN 287
P +T S IS P + D N
Sbjct: 84 ---PHSHETTITCTKSLISVPYYKSVDMN 109
>gnl|CDD|185259 PRK15361, PRK15361, pathogenicity island 2 effector protein SseD;
Provisional.
Length = 195
Score = 30.0 bits (67), Expect = 1.8
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 132 ETFHSKDDPGYGSVIYETMTVPLTGEEGGET-FTVSYNVYNTK-----LNGDVSQPSDIL 185
E F + G+++ +T+ L G GGET V +T L V+Q
Sbjct: 84 EAFRASMITAGGAMLSGVLTIGL-GAVGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQ 142
Query: 186 RQAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNV 225
+A ADL QS ++ + I+ + E QQI+G S++
Sbjct: 143 DKAIADLQQNGAQSYNKSLTEIMEKATEIMQQIIGVGSSL 182
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 30.9 bits (69), Expect = 1.8
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 195 TPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKV-------- 246
+ +A T ++I + G S P E V
Sbjct: 520 SDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLT 579
Query: 247 -----SQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTT 284
Q + S P+S P SS ++ + +S ++P T+
Sbjct: 580 SAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSA 622
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A;
Provisional.
Length = 170
Score = 29.7 bits (67), Expect = 2.0
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 37/124 (29%)
Query: 250 NSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSY---------------- 293
+S+S SS+ SS+S SS S +S+ + Y
Sbjct: 2 SSASSGSSAPAVNSSPSSSSSGKSSNSSKSASSAVNPASVVAGYEPLPSFRDVPNSEKQN 61
Query: 294 ------VALIAMAINNNEHKRATLAEIYNYIA--------VKFPYFEKNKKGWQNSIRHN 339
VA A+ + NN+H I N IA + FP EKN +G N H
Sbjct: 62 LFVRKLVAERALFLWNNDH-------IVNLIAQNRQVILPIIFPALEKNTRGHWNQAVHG 114
Query: 340 LSLN 343
L+LN
Sbjct: 115 LTLN 118
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 30.7 bits (69), Expect = 2.1
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 196 PDQSAGRTTSVIISNSPEPKQQILGENS---NVQNKKPDPQENQTTPRNKKTKVSQKNSS 252
+ +G SP P+ NS N N D +E T N T + +S
Sbjct: 489 SQEPSG-------GESPNPELPANNNNSNSNNNNNNGADRKEAAATTGNATTTSNGSGTS 541
Query: 253 SQPSSSSPPP 262
SS PP
Sbjct: 542 VPLPVSSEPP 551
>gnl|CDD|220662 pfam10265, DUF2217, Uncharacterized conserved protein (DUF2217).
This is a family of conserved proteins of from 500 - 600
residues found from worms to humans. Its function is not
known.
Length = 515
Score = 30.5 bits (69), Expect = 2.1
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 228 KKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTT 283
K+ E T R K+ + +S S SS P D S S K+SS S S +
Sbjct: 42 KRKMEGEQLGTRRPLSRKIGKCSSRRVRSPSSKPNDTLSGASSKLSSKHSGSSHSL 97
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members
of this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 30.5 bits (69), Expect = 2.3
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 236 QTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTT-----TDSNKPP 290
Q +K S ++S+P S + S SPSST + P
Sbjct: 115 QAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQSPQLTPSNKP 174
Query: 291 YSYVAL 296
S +
Sbjct: 175 ASPSSS 180
Score = 30.1 bits (68), Expect = 2.5
Identities = 19/53 (35%), Positives = 22/53 (41%)
Query: 233 QENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTD 285
Q Q TP NK S S SSS P + S + S SSP + SS
Sbjct: 164 QSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSGDKK 216
>gnl|CDD|236627 PRK09824, PRK09824, PTS system beta-glucoside-specific transporter
subunits IIABC; Provisional.
Length = 627
Score = 30.5 bits (69), Expect = 2.3
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 20/58 (34%)
Query: 160 GETFTVSYNVYNTKLNGDVSQPSDIL----RQAFADLDITPDQSAGR--TTSVIISNS 211
G+ FT NV GD D+L A + AG TT V+ISNS
Sbjct: 559 GKFFTAHVNV------GDKVNTGDLLIEFDIPAIRE--------AGYDLTTPVLISNS 602
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 30.0 bits (67), Expect = 2.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 240 RNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPP 290
RN K+ + N S P++ P +++ + VSS I+ + T + NK P
Sbjct: 360 RNIKSMWEKGNVFSSPAAKGTPNKDTAGLKVGVSSRINEWLTKTPEGNKSP 410
>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau;
Validated.
Length = 451
Score = 30.1 bits (68), Expect = 2.7
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 203 TTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTT-PRNKKTKVSQKNSSSQPSSSSPP 261
T S ++S P L S K + + P+ + ++ S +S
Sbjct: 354 TLSQLVSQIKSPAFTQLRLESCPPQIKSSNSQQTVSSPQPQPVAKLEQGSLLTAASPQTK 413
Query: 262 PDESSSTSIKVSSPISSPSST 282
+ +V SP S S+
Sbjct: 414 KETIHQ---EVPSPSLSKSAA 431
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.3 bits (69), Expect = 2.8
Identities = 8/61 (13%), Positives = 18/61 (29%)
Query: 230 PDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKP 289
P ++ + + + S P + P + + SP + +S
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 290 P 290
P
Sbjct: 421 P 421
>gnl|CDD|221734 pfam12722, Hid1, High-temperature-induced dauer-formation protein.
Hid1 (high-temperature-induced dauer-formation protein
1) represents proteins of approximately 800 residues
long and is conserved from fungi to humans. It contains
up to seven potential transmembrane domains separated by
regions of low complexity. Functionally it might be
involved in vesicle secretion or be an inter-cellular
signalling protein or be a novel insulin receptor.
Length = 813
Score = 30.0 bits (68), Expect = 2.8
Identities = 22/141 (15%), Positives = 36/141 (25%), Gaps = 10/141 (7%)
Query: 208 ISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKK---TKVSQKNSSSQPSSSSPPPDE 264
+ N Q E SN ++ ++V ++N S + P
Sbjct: 571 LRNLILDSSQEEDERSNQSASGSLSDNPSNDNDSRSPSLSEVPEENKSLAITDDFDPASR 630
Query: 265 SSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYN-YIAVKFP 323
+STS + P + S + R A +
Sbjct: 631 ENSTSEAAAPPSVNSVPLQLQGP----SEKDRGKNPAGSLAFSRLNSATRPKWPSGLSSK 686
Query: 324 YFEKNKK--GWQNSIRHNLSL 342
EK W S + L L
Sbjct: 687 SKEKFPPTSDWVESWKGKLPL 707
>gnl|CDD|236343 PRK08868, PRK08868, flagellar protein FlaG; Provisional.
Length = 144
Score = 28.6 bits (64), Expect = 3.4
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 236 QTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVA 295
Q N TK + +N + S VS S SS + + S A
Sbjct: 11 QPYGSNSGTKFASENGNGTSSVL-------------VSDKTRSVSSEKVEKTEQELSVEA 57
Query: 296 LIAMAINNNEHKRATLAEI 314
+AMA E R L ++
Sbjct: 58 AVAMAEQRQELNREELEKM 76
>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain. Domain commonly found
in eukaryotic signalling proteins. The domain family
possesses multiple functions including the abilities to
bind inositol phosphates, and various proteins. PH
domains have been found to possess inserted domains
(such as in PLC gamma, syntrophins) and to be inserted
within other domains. Mutations in Brutons tyrosine
kinase (Btk) within its PH domain cause X-linked
agammaglobulinaemia (XLA) in patients. Point mutations
cluster into the positively charged end of the molecule
around the predicted binding site for
phosphatidylinositol lipids.
Length = 102
Score = 28.3 bits (63), Expect = 3.4
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 324 YFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFE 373
Y++ K + ++ L+ C V+ A + +K + + + T
Sbjct: 32 YYKSKKDKKSYKPKGSIDLSGCTVREAPDPDSSKKPHCFEIKTSDRKTLL 81
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.8 bits (67), Expect = 3.6
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 228 KKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPP--PDESSSTSIKVSSPISSPSSTTTD 285
P +P K T ++ SS P S P +S+ + S ++ +
Sbjct: 141 VGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKT 200
Query: 286 SNKPP 290
S K
Sbjct: 201 SVKAA 205
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 29.4 bits (66), Expect = 3.9
Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 2/99 (2%)
Query: 195 TPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDP-QENQTTPRNKKTKVSQKNSSS 253
P + P + K P E + K K K
Sbjct: 51 APTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPK 110
Query: 254 QPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYS 292
P S T+ K + + P+ + ++ +
Sbjct: 111 VKPQPKPKK-PPSKTAAKAPAAPNQPARPPSAASASGAA 148
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 29.3 bits (66), Expect = 4.2
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 197 DQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPS 256
+ + TT+ S E S + P + + S + SS P
Sbjct: 159 EDADVATTNSDNSFPGEDA----DPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPP 214
Query: 257 SSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVAL 296
+ S ++ S + + S P P L
Sbjct: 215 APSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPL 254
>gnl|CDD|152451 pfam12016, Stonin2_N, Stonin 2. Stonin 2 is involved in clathrin
mediated endocytosis. It binds to Eps15 by its highly
conserved NPF motif. The complex formed has been shown
to directly associate with the clathrin adaptor complex
AP-2, and to localize to clathrin-coated pits (CCPs). In
addition, stonin2 was recently identified as a specific
sorting adaptor for synaptotagmin, and may thus regulate
synaptic vesicle recycling.
Length = 341
Score = 29.5 bits (65), Expect = 4.2
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 208 ISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSS 267
+S+SP+ + GEN V D ++ ++K + + +S S PPPD +S+
Sbjct: 39 LSSSPDQSESSSGENHVVDEGSQDHSHSEQDDSSEKMGLISEAASPPGSPEQPPPDLASA 98
Query: 268 TSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAI 301
S V +P ++T+ PP+ A A+ +
Sbjct: 99 ISNWVQFEDDTPWASTS----PPHKETAETALPL 128
>gnl|CDD|214826 smart00806, AIP3, Actin interacting protein 3. Aip3p/Bud6p is a
regulator of cell and cytoskeletal polarity in
Saccharomyces cerevisiae that was previously identified
as an actin-interacting protein. Actin-interacting
protein 3 (Aip3p) localizes at the cell cortex where
cytoskeleton assembly must be achieved to execute
polarized cell growth, and deletion of AIP3 causes gross
defects in cell and cytoskeletal polarity. Aip3p
localization is mediated by the secretory pathway,
mutations in early- or late-acting components of the
secretory apparatus lead to Aip3p mislocalization.
Length = 426
Score = 29.3 bits (66), Expect = 4.5
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 212 PEPKQQILGENSNVQNKKPDPQENQTTPRN--KKTKVSQKNSS---SQPSSSSPPPDESS 266
E K+ I E +QN+ + ++ + R ++ K Q+NS+ ++P++S P SS
Sbjct: 77 DEVKKHIDDEIDTLQNELDEVKQALESQREAIQRLKERQQNSAANIARPAASPSPVLASS 136
Query: 267 STSIKVSSPISS 278
S++I +++
Sbjct: 137 SSAISLANNPDK 148
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 29.5 bits (66), Expect = 4.6
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 236 QTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPP 290
+ RN N SSS S S S S S SS+ ++ N+PP
Sbjct: 376 KPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPP 430
Score = 28.7 bits (64), Expect = 8.3
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 201 GRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSP 260
+ TS S K + +K E +KK ++ +K+SS PSSSS
Sbjct: 733 KKQTSKTASEKSSSKGK----------RKHKNDEEADKIESKKQRLEEKSSSCSPSSSSS 782
Query: 261 PPDESSSTSIKVSS------PISSPSSTTTDSNKPP 290
SS+ + SS + SPSS + S+ P
Sbjct: 783 HHHSSSNKESRKSSRNKEEEMLPSPSSPLSSSSPKP 818
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 29.6 bits (67), Expect = 4.7
Identities = 21/194 (10%), Positives = 49/194 (25%), Gaps = 4/194 (2%)
Query: 78 DRYIEYVEEQSDIKYNDISHADISRHDRLDISSQYLDHDFDSREVTSGESRSKPETFHSK 137
+ V + ++ D ++ SS D + ++ +S K
Sbjct: 1189 SKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKN 1248
Query: 138 DDPGYGSVIYETMTVPLTGEEGG--ETFTVSYNVYNTKLNGDVSQPSDILRQAFADLDIT 195
+ E + L+ E VS Y+ +
Sbjct: 1249 NSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKK 1308
Query: 196 PDQSAGRTTSVIISNSPEPKQQILGENSNVQNKK--PDPQENQTTPRNKKTKVSQKNSSS 253
+ + + + +++ + + K Q ++ R +K K +
Sbjct: 1309 KVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDD 1368
Query: 254 QPSSSSPPPDESSS 267
S DE
Sbjct: 1369 DDSEVDDSEDEDDE 1382
>gnl|CDD|241334 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-binding domain.
RanBP3, a Ran-interacting nuclear protein, unlike the
related proteins RanBP1 and RanBP2, which promote
disassembly of the export complex in the cytosol, acts
as a CRM1 cofactor, enhancing nuclear export signal
(NES) export by stabilizing the export complex in the
nucleus. CRM1/Exportin1 is responsible for exporting
many proteins and ribonucleoproteins from the nucleus to
the cytosol. RanBP3 also alters the cargo selectivity of
CRM1, promoting recognition of the NES of HIV-1 Rev and
of other cargos while deterring recognition of the
import adaptor protein Snurportin1. RanBP3 contains a
N-terminal nuclear localization signal (NLS), 2 FxFG
motifs, and a single RanBD. RabBD shares structural
similarity to the PH domain, but lacks detectable
sequence similarity.
Length = 113
Score = 27.6 bits (62), Expect = 5.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 318 IAVKFPYFEKNKKGWQNSIRHNLSLNDC 345
I K F+K+K+ W R L LND
Sbjct: 8 INCKLFAFDKSKQSWVERGRGTLRLNDK 35
>gnl|CDD|220132 pfam09174, Maf1, Maf1 regulator. Maf1 is a negative regulator of
RNA polymerase III. It targets the initiation factor
TFIIIB.
Length = 177
Score = 28.5 bits (64), Expect = 5.9
Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 27/146 (18%)
Query: 218 ILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPIS 277
I G K + + +S S P S SP S+ ++ P+S
Sbjct: 2 ITGRLEAYSCKSAGSDKRLFKSIESEVNNCDLSSLSSPESLSPLNLSDSNDNLSPFGPLS 61
Query: 278 SPSSTTTDSNKPPYSYVALIAM-----------AINNNEHKR-----ATLAEIYNYI--A 319
SS T LIA+ + ++ K+ + EI N +
Sbjct: 62 EKSSRKT--------LAYLIAILNASFPDYDFSVLKPHDFKKEPSLSTVINEINNNLSSL 113
Query: 320 VKFPYFEKNKKGWQNSIRHNLSLNDC 345
VK Y ++ W+ I +SL DC
Sbjct: 114 VKNIYPSFVEELWEI-IDEVISLKDC 138
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase.
Length = 586
Score = 29.0 bits (65), Expect = 6.2
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 15/54 (27%)
Query: 244 TKVSQKNSSSQPSSSSPPPDESSSTSIK------------VSSPISSPSSTTTD 285
T V ++ + S PS PPP+ + +TS+K +SS S P+S TTD
Sbjct: 50 TVVHKRKNESNPS---PPPELTPATSLKAVCSVTRYPESCISSISSLPTSNTTD 100
>gnl|CDD|225372 COG2815, COG2815, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 303
Score = 28.9 bits (65), Expect = 6.3
Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 17/158 (10%)
Query: 139 DPGYGSVIYETMTVPLTGEEGGETFTVSYNVYNTKLNGDVSQPSDILRQAFADLDITPDQ 198
P G+ + TV LT +G ET TV V T + S L+ A ++
Sbjct: 138 SPSAGTEVKPGETVKLTVSKGPETITVPDLVGMT-----YDEASSNLKAAGLTVNSKEYV 192
Query: 199 SAGRTTSVIISNSPEP------KQQILGENSNVQNKKPD-----PQENQTTPRNKKTKVS 247
S+ R +IS SP +I S PD E + PR +
Sbjct: 193 SSDRPEGEVISQSPPAGTTVNVGSKIEIVVSKGAFVAPDLSGMFTVEAEPHPREEGDTSQ 252
Query: 248 QKNSSSQPSSSSPPPDESS-STSIKVSSPISSPSSTTT 284
+ ++ D S + + S T+
Sbjct: 253 EVIRDKDADVTASGTDSSVNIQPPPGGTIVLKGSEITS 290
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 28.9 bits (64), Expect = 6.6
Identities = 17/83 (20%), Positives = 28/83 (33%)
Query: 209 SNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSST 268
P+ ++ ++P ++ P S K S S PPP + S+
Sbjct: 585 PKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSS 644
Query: 269 SIKVSSPISSPSSTTTDSNKPPY 291
+ P S S KPP+
Sbjct: 645 PERPEGPKIIKSPKPPKSPKPPF 667
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 28.6 bits (63), Expect = 7.0
Identities = 12/61 (19%), Positives = 25/61 (40%)
Query: 226 QNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTD 285
+ +P +E ++ + Q+ S + S++P ++ S P+ S S T
Sbjct: 94 KISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQ 153
Query: 286 S 286
S
Sbjct: 154 S 154
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 27.7 bits (62), Expect = 7.0
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 231 DPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPI 276
+ KK K S NSS +S+ DE ++ + P
Sbjct: 20 SKRSELKKASKKKKKRS--NSSPGSTSNEENEDEDDESTAESKRPE 63
>gnl|CDD|213363 cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1p-like subfamily.
This eukaryotic subfamily belongs to the Thermotoga
maritima CorA (TmCorA)-family of the MIT superfamily of
essential membrane proteins involved in transporting
divalent cations (uptake or efflux) across membranes.
This subfamily includes three Saccharomyces cerevisiae
members: two plasma membrane proteins, the Mg2+
transporter Alr1p/Swc3p and the putative Mg2+
transporter, Alr2p, and the vacuole membrane protein
Mnr2p, a putative Mg2+ transporter. Thermotoga maritima
CorA forms funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport by Alr1p. Natural variants in this signature
sequence may be associated with the transport of
different divalent cations. The functional diversity of
the MIT superfamily may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 305
Score = 28.4 bits (64), Expect = 7.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 379 RRRRMKRPVRTPSYNAKPYLGDMYAH-----QNL-IGRDIFS 414
+R MK+ +P YLGD+ H Q L D+ S
Sbjct: 179 LKRLMKKTFVSPDSEVAIYLGDVQDHILTLLQKLNHYEDLLS 220
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 29.0 bits (65), Expect = 7.4
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 18/97 (18%)
Query: 205 SVIISNSPEPKQQILGENSNVQNKKPDPQE---NQTT-----------PRNKKTKVSQKN 250
V + + +QI + N+Q P + N TT PR +K K +
Sbjct: 221 FVNLEVNESDIEQISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRTRKRKSIDDH 280
Query: 251 SSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSN 287
S + + + P S S + +
Sbjct: 281 KLSLNQAPEKFKNNTKPD----DDPQSDFSDKGSRKS 313
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 28.9 bits (65), Expect = 7.5
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 228 KKPDPQENQTTPRNKKTKVSQKNSSSQPSS---SSPPPDESSSTSIKVSSPISSPSSTTT 284
KK TP ++ S +S P + S+ + S + ++ +
Sbjct: 637 KKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGS 696
Query: 285 DSNKPP 290
PP
Sbjct: 697 APAPPP 702
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 28.7 bits (64), Expect = 8.0
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 187 QAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKV 246
Q F+ +P R ++ I++SP NSN +Q +P + +
Sbjct: 71 QIFSSFSSSPKLFQRRNSAGPITHSPSATSSTSSLNSN--------DGDQFSPASD--SL 120
Query: 247 SQKNSSSQPSSSSPPPDESSSTSIK------VSSPISSPSSTTTDSN 287
S SS+Q S P D S K S+ + P TD+N
Sbjct: 121 SFNPSSTQSRKDSGPGDGSPVQKRKNPLLPSSSTHGTHPPIVFTDNN 167
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.5 bits (64), Expect = 8.1
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 229 KPDPQENQT-TPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSN 287
D VS + SS PPD S S + P +S S + +
Sbjct: 288 NADSSVEANGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAAF 347
Query: 288 KPP 290
+ P
Sbjct: 348 ERP 350
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 28.5 bits (63), Expect = 8.9
Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 165 VSYNVYNTKLNGDVSQPSDILRQAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSN 224
VS+ Y +++ + + A A+ ++ + G T S++PEP+ + +
Sbjct: 184 VSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVG-TQGTTTSSNPEPQTEP---PPS 239
Query: 225 VQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTT 283
+ PQ +T ++ +Q + P S + P ++ T
Sbjct: 240 QRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQET 298
>gnl|CDD|234428 TIGR03979, His_Ser_Rich, His-Xaa-Ser repeat protein HxsA. Members
of this protein share two defining regions. One is a
histidine/serine-rich cluster, typically
H-R-S-H-S-S-H-R-S-H-S-S-H. Members are found always in
the context of a pair of radical SAM proteins, HxsB and
HxsC, and a fourth protein HxsD. The system is predicted
to perform peptide modifications, likely in the
His-Xaa-Ser region, to produce some uncharacterized
natural product.
Length = 186
Score = 27.9 bits (62), Expect = 9.5
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 251 SSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRAT 310
S S S P ++S+ S V SP SPS ++ + P + V + A N N KR
Sbjct: 69 YSGAGGSYSVPSGDTSTYSYPVPSPSYSPSPGSSIQSLPSTTGVRPQSSAENANSEKRKL 128
Query: 311 L 311
L
Sbjct: 129 L 129
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 28.3 bits (63), Expect = 9.9
Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 5/141 (3%)
Query: 167 YNVYNTKLNGDVSQPSDILRQAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNVQ 226
+ T ++ + Q D S I + S P ++ +
Sbjct: 354 WLSLKTVVDHVLRDSQSSKIQQIRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSG 413
Query: 227 NKKPDPQENQTTPRNKKTKVS---QKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTT 283
TP +K +V + + +P+ +S P DE S +SP+S+T
Sbjct: 414 PGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIP-DEKPSNISVFEDSETSPNSST 472
Query: 284 TDSNKPPYSYVALIAMAINNN 304
PP + + NN
Sbjct: 473 L-LRDPPPKKCGEESGHLPNN 492
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.127 0.369
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,247,152
Number of extensions: 2193613
Number of successful extensions: 2483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2298
Number of HSP's successfully gapped: 177
Length of query: 463
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 363
Effective length of database: 6,502,202
Effective search space: 2360299326
Effective search space used: 2360299326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (27.3 bits)