RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8120
(463 letters)
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 136 bits (345), Expect = 5e-40
Identities = 54/95 (56%), Positives = 70/95 (73%)
Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
KPPYSY+ALI MAI + K+ TL+ I +I+ +FPY+ + WQNSIRHNLSLNDCFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
K+ +E KGNYWTL + EDMF+NG++ RRR+
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRK 96
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 134 bits (338), Expect = 7e-39
Identities = 42/95 (44%), Positives = 53/95 (55%)
Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
KPPYSY LI AI K+ TL IY +I +PY+ KGWQNSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
KV + KG++W + E +R+RR
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRP 97
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 132 bits (334), Expect = 2e-38
Identities = 52/90 (57%), Positives = 67/90 (74%)
Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
KPPYSY+ALI MAI N K+ TL IY +I +FP++ +NK+GWQNSIRHNLSLN+CFV
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNY 377
KV ++ KG+YWTL +MFENG++
Sbjct: 64 KVPRDDKKPGKGSYWTLDPDSYNMFENGSF 93
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 105 bits (264), Expect = 1e-28
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 14/95 (14%)
Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
+PP++Y LI AI + ++ TL EIY++ F YF +N W+N++RHNLSL+ CFV
Sbjct: 2 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 61
Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
+V KG WT+ + ++RR
Sbjct: 62 RVENV-----KGAVWTV---------DEVEYQKRR 82
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 105 bits (264), Expect = 2e-28
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYF-----EKNKKGWQNSIRHNLSL 342
SY LI+ AI + KR TLA+IY ++ PYF + GW+NSIRHNLSL
Sbjct: 5 WGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSL 64
Query: 343 NDCFVKVAKEGAGERKGNYWTL 364
+ F+KV E G K ++W L
Sbjct: 65 HSKFIKVHNEATG--KSSWWML 84
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 75
Score = 103 bits (259), Expect = 6e-28
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 293 YVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKE 352
Y+ALI MAI ++ R TLAEI Y+ KFP+F + GW+NS+RHNLSLNDCFVKV ++
Sbjct: 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60
Query: 353 -GAGERKGNYWTL 364
K NYW L
Sbjct: 61 PSRPWGKDNYWML 73
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 75
Score = 28.2 bits (63), Expect = 0.49
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 289 PPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKK 330
P + + A++ + E K +LA + +A EKN
Sbjct: 4 PSVTELITKAVS-ASKERKGLSLAALKKALAAGGYDVEKNNS 44
>d1u1ha2 c.1.22.2 (A:396-760)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 365
Score = 28.2 bits (62), Expect = 2.4
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 61 RYEDNRYLEHQVQDISHDRYIEYVEEQSDIKYNDISHADISRHD 104
Y+ + E + + V+ Q ++ + + H + R+D
Sbjct: 57 EYKAKKVSEEDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERND 100
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 90
Score = 25.8 bits (57), Expect = 4.0
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 53 SHRYK---EHNRYEDNRYLEHQVQDISHDRY 80
SHRYK EH + ED + V DI HD
Sbjct: 20 SHRYKADLEHRKVEDGDVIAGTVVDIEHDPA 50
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 85
Score = 25.1 bits (55), Expect = 5.8
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 234 ENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPY 291
++ T P+N + + E+ S ++ ++ +S D N P +
Sbjct: 20 QDITVPKNVRKVAQDSKAKLS--------QENESLDLRCATVLSMLDEMANDPNVPAH 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.127 0.369
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,683,385
Number of extensions: 78146
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 20
Length of query: 463
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 375
Effective length of database: 1,199,356
Effective search space: 449758500
Effective search space used: 449758500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.7 bits)