BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8121
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 21/246 (8%)
Query: 47 YTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLG 106
Y SE + ++ + +G N +P + K+ LV E +D+ + IL +AA +S
Sbjct: 15 YFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLAACISFV 74
Query: 107 LSFYKPADEDVFDDDEAKHGWIEGLAXXXXXXXXXXXTAFNDYTKERQFRGLQSRIEGEH 166
L++++ +E V ++E + + E L+
Sbjct: 75 LAWFEEGEETV-------TAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMG 127
Query: 167 KFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCL--IQSNDLKVDESSLTGESDHV 224
K + V++I DIV GDI ++ GD +PAD + I+S L+VD+S LTGES V
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSV 187
Query: 225 KKGEAFDP-----------MVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQE 273
K P M+ SGT++ G +V GV ++ G I + AA ++ +
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQM-AATEQDK 246
Query: 274 QEIKKK 279
+++K
Sbjct: 247 TPLQQK 252
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 21/246 (8%)
Query: 47 YTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLG 106
Y SE + ++ + +G N +P + K+ LV E +D+ + IL +AA +S
Sbjct: 15 YFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFV 74
Query: 107 LSFYKPADEDVFDDDEAKHGWIEGLAXXXXXXXXXXXTAFNDYTKERQFRGLQSRIEGEH 166
L++++ +E + ++E + + E L+
Sbjct: 75 LAWFEEGEETI-------TAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMG 127
Query: 167 KFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCL--IQSNDLKVDESSLTGESDHV 224
K + V++I DIV GDI ++ GD +PAD + I+S L+VD+S LTGES V
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 187
Query: 225 KKGEAFDP-----------MVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQE 273
K P M+ SGT++ G +V GV+++ G I + AA ++ +
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM-AATEQDK 246
Query: 274 QEIKKK 279
+++K
Sbjct: 247 TPLQQK 252
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 21/246 (8%)
Query: 47 YTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLG 106
Y SE + ++ + +G N +P + K+ LV E +D+ + IL +AA +S
Sbjct: 16 YFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFV 75
Query: 107 LSFYKPADEDVFDDDEAKHGWIEGLAXXXXXXXXXXXTAFNDYTKERQFRGLQSRIEGEH 166
L++++ +E + ++E + + E L+
Sbjct: 76 LAWFEEGEETI-------TAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMG 128
Query: 167 KFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCL--IQSNDLKVDESSLTGESDHV 224
K + V++I DIV GDI ++ GD +PAD + I+S L+VD+S LTGES V
Sbjct: 129 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 188
Query: 225 KKGEAFDP-----------MVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQE 273
K P M+ SGT++ G +V GV+++ G I + AA ++ +
Sbjct: 189 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM-AATEQDK 247
Query: 274 QEIKKK 279
+++K
Sbjct: 248 TPLQQK 253
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 21/246 (8%)
Query: 47 YTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLG 106
Y SE + ++ + +G N +P + K+ LV E +D+ + IL +AA +S
Sbjct: 15 YFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFV 74
Query: 107 LSFYKPADEDVFDDDEAKHGWIEGLAXXXXXXXXXXXTAFNDYTKERQFRGLQSRIEGEH 166
L++++ +E + ++E + + E L+
Sbjct: 75 LAWFEEGEETI-------TAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMG 127
Query: 167 KFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCL--IQSNDLKVDESSLTGESDHV 224
K + V++I DIV GDI ++ GD +PAD + I+S L+VD+S LTGES V
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 187
Query: 225 KKGEAFDP-----------MVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQE 273
K P M+ SGT++ G +V GV+++ G I + AA ++ +
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM-AATEQDK 246
Query: 274 QEIKKK 279
+++K
Sbjct: 247 TPLQQK 252
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 20/236 (8%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
+ E+ +K T S GL+ + A RD + T PP P+ ++ + ++++
Sbjct: 23 LDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPE-WVKFCRQLFGGFSMLLWI 81
Query: 99 IAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAXXXXXXXXXXXTAFNDYTKERQFRGL 158
A L L +E+ +D+ L T Y +E + +
Sbjct: 82 GAILCFLAYGIQAATEEEPQNDN---------LYLGVVLSAVVIITGCFSYYQEAKSSKI 132
Query: 159 QSRIEG--EHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESS 216
+ + VIR GE I+ ++VVGD+ ++K GD +PAD +I +N KVD SS
Sbjct: 133 MESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSS 192
Query: 217 LTGESDHVKKGEAF---DPM-----VLSGTHVMEGSGKMLVTAVGVNSQAGIIFTL 264
LTGES+ + F +P+ T+ +EG+ + +V G + G I TL
Sbjct: 193 LTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATL 248
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 20/236 (8%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
+ E+ +K T S GL+ + A RD + T PP P+ ++ + ++++
Sbjct: 17 LDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPE-WVKFCRQLFGGFSMLLWI 75
Query: 99 IAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAXXXXXXXXXXXTAFNDYTKERQFRGL 158
A L L +E+ +D+ L T Y +E + +
Sbjct: 76 GAILCFLAYGIQAATEEEPQNDN---------LYLGVVLSAVVIITGCFSYYQEAKSSKI 126
Query: 159 QSRIEG--EHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESS 216
+ + VIR GE I+ ++VVGD+ ++K GD +PAD +I +N KVD SS
Sbjct: 127 MESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSS 186
Query: 217 LTGESDHVKKGEAF---DPM-----VLSGTHVMEGSGKMLVTAVGVNSQAGIIFTL 264
LTGES+ + F +P+ T+ +EG+ + +V G + G I TL
Sbjct: 187 LTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATL 242
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 16/234 (6%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
+ E+ K T + GL+ + A RD S T PP P+ ++ + + I+L
Sbjct: 53 LDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPE-WIKFCRQLFGGFS-ILLW 110
Query: 99 IAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAXXXXXXXXXXXTAFNDYTKERQFRGL 158
I A+ L F + +D+ A G+ + + + R
Sbjct: 111 IGAI----LCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSF 166
Query: 159 QSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLT 218
++ + + VIR GE I+ +V GD+ ++K GD +PAD +I ++ KVD SSLT
Sbjct: 167 KNMVP--QQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLT 224
Query: 219 GESDHVKKGEAF---DPM-----VLSGTHVMEGSGKMLVTAVGVNSQAGIIFTL 264
GES+ + F +P+ T+ +EG+ + +V G + G I TL
Sbjct: 225 GESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATL 278
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 167 KFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKK 226
K V+R G+ + +V GDI IK GD++PAD L++ + LKVD+S+LTGES V K
Sbjct: 131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 190
Query: 227 GEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAG 259
+ V SG+ +G + +V A GV++ G
Sbjct: 191 HPGQE--VFSGSTCKQGEIEAVVIATGVHTFFG 221
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 167 KFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSND-LKVDESSLTGESDHVK 225
K V+R G +K+I ++V GDI Q++ G ++PADG ++ + L+VD+S+LTGES V
Sbjct: 179 KAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVD 238
Query: 226 KGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAA 268
K + V + + V G +++TA G N+ G L+ AA
Sbjct: 239 KHKG--DQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAA 279
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 20/245 (8%)
Query: 38 GIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTI-PPKPPKTFLTLVWEALQDVTLII 96
+ E+ +K TS ++GLS S A RD G N + PP+ ++ + L +
Sbjct: 57 SVAELEQKYQTSATKGLSASLAAELLLRD--GPNALRPPRGTPEYVKFARQ-LAGGLQCL 113
Query: 97 LEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAXXXXXXXXXXXTAFNDYTKERQFR 156
+ +AA + L ++F A E D+ + + +A F F+
Sbjct: 114 MWVAAAICL-IAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFK 172
Query: 157 GLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESS 216
L + + +VIR G+ QI+ +VVGD+ ++K GD +PAD ++Q+ KVD SS
Sbjct: 173 NLVPQ-----QATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSS 227
Query: 217 LTGESD---------HVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGA 267
LTGES+ H E + S T +EG+ + LV G + G I +L
Sbjct: 228 LTGESEPQTRSPECTHESPLETRNIAFFS-TMCLEGTAQGLVVNTGDRTIIGRIASLASG 286
Query: 268 AVDEQ 272
+E+
Sbjct: 287 VENEK 291
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 153 RQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKV 212
++ GLQ++ VIR G+ + V ++ VGDI ++ G+ +P DG +++ V
Sbjct: 125 KKLVGLQAKTA-----VVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-V 178
Query: 213 DESSLTGESDHVKKGE 228
DES ++GE V K +
Sbjct: 179 DESMISGEPVPVLKSK 194
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 153 RQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKV 212
++ GLQ++ VIR G+ + V ++ VGDI ++ G+ +P DG +++ V
Sbjct: 203 KKLVGLQAKTA-----VVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-V 256
Query: 213 DESSLTGESDHVKKGE 228
DES ++GE V K +
Sbjct: 257 DESMISGEPVPVLKSK 272
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 153 RQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKV 212
++ GLQ++ VIR G+ + V ++ VGDI ++ G+ +P DG +++ V
Sbjct: 4 KKLVGLQAK-----TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-V 57
Query: 213 DESSLTGESDHVKK 226
DES ++GE V K
Sbjct: 58 DESMISGEPVPVLK 71
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 174 GEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKK 226
G +++S+ ++ VGD+ +++ G+ +P DG +Q VDES +TGE V K
Sbjct: 234 GSEEEVSLDNVAVGDLLRVRPGEKIPVDGE-VQEGRSFVDESMVTGEPIPVAK 285
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 177 KQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLS 236
+Q+ V + GDI ++ G P DG +I+ + + VDES +TGE+ V K V++
Sbjct: 35 EQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPG--STVIA 91
Query: 237 GTHVMEGSGKMLVTAVGVNSQAGIIFTLL 265
G+ GS + T VG ++ I L+
Sbjct: 92 GSINQNGSLLICATHVGADTTLSQIVKLV 120
>pdb|2I71|A Chain A, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
pdb|2I71|B Chain B, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
Length = 400
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 177 KQISVGDIVVGDICQIKYGDLLPADGCLIQS--NDLKVDESSLTGESDHVK-KGE---AF 230
K + + I V D+ KY D C+IQ+ NDL + ES + + + K KG+ F
Sbjct: 65 KTVVILGISVADVYNCKYADYRSCKECIIQNSKNDLGISESYVVAPNVYQKFKGKPDHYF 124
Query: 231 DPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIF 262
+ ++E G + V +++ GI +
Sbjct: 125 TYIYYHSLRILEKEG---INEVFIDTTHGINY 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,321,979
Number of Sequences: 62578
Number of extensions: 332258
Number of successful extensions: 644
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 29
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)