Query psy8121
Match_columns 285
No_of_seqs 233 out of 1703
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 19:08:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0204|consensus 100.0 5.8E-53 1.3E-57 401.0 19.0 260 12-284 79-338 (1034)
2 TIGR01517 ATPase-IIB_Ca plasma 100.0 1E-48 2.2E-53 397.0 31.2 272 4-283 11-282 (941)
3 TIGR01523 ATPase-IID_K-Na pota 100.0 1.3E-47 2.8E-52 390.3 27.1 211 37-268 10-233 (1053)
4 TIGR01522 ATPase-IIA2_Ca golgi 100.0 2E-46 4.3E-51 378.3 27.9 227 37-283 7-246 (884)
5 PRK10517 magnesium-transportin 100.0 3.5E-46 7.6E-51 375.3 28.8 225 37-283 52-293 (902)
6 KOG0202|consensus 100.0 8.5E-48 1.8E-52 366.0 15.1 226 37-283 7-244 (972)
7 TIGR01524 ATPase-IIIB_Mg magne 100.0 8.2E-46 1.8E-50 372.3 29.6 224 37-283 18-258 (867)
8 PRK15122 magnesium-transportin 100.0 8.7E-45 1.9E-49 365.6 28.7 235 37-283 30-291 (903)
9 TIGR01106 ATPase-IIC_X-K sodiu 100.0 3E-44 6.6E-49 365.7 27.4 240 36-283 19-266 (997)
10 TIGR01647 ATPase-IIIA_H plasma 100.0 1.7E-44 3.8E-49 358.4 25.0 207 53-283 1-207 (755)
11 COG0474 MgtA Cation transport 100.0 2.1E-41 4.5E-46 341.6 22.6 230 37-283 26-269 (917)
12 KOG0205|consensus 100.0 3.7E-40 8.1E-45 306.0 12.6 228 36-282 20-247 (942)
13 TIGR01657 P-ATPase-V P-type AT 100.0 2.3E-38 5E-43 324.4 23.4 209 51-283 137-370 (1054)
14 TIGR01116 ATPase-IIA1_Ca sarco 100.0 3.2E-36 6.9E-41 305.0 21.7 190 85-283 1-201 (917)
15 KOG0203|consensus 100.0 3.2E-36 6.9E-41 286.8 10.1 241 35-283 40-288 (1019)
16 PRK14010 potassium-transportin 100.0 7E-33 1.5E-37 269.2 21.4 188 87-282 28-221 (673)
17 PRK01122 potassium-transportin 100.0 1.4E-32 3.1E-37 267.3 22.5 192 86-282 28-221 (679)
18 TIGR01497 kdpB K+-transporting 100.0 3E-32 6.5E-37 264.5 22.3 192 86-283 27-223 (675)
19 TIGR01512 ATPase-IB2_Cd heavy 100.0 5.5E-32 1.2E-36 260.5 20.9 166 96-283 4-169 (536)
20 COG2217 ZntA Cation transport 100.0 6.9E-32 1.5E-36 262.7 20.8 191 78-283 131-326 (713)
21 TIGR01511 ATPase-IB1_Cu copper 100.0 1.5E-31 3.3E-36 258.5 22.0 199 79-283 3-206 (562)
22 PRK11033 zntA zinc/cadmium/mer 100.0 1.8E-31 3.9E-36 264.8 21.8 183 79-283 171-357 (741)
23 KOG0208|consensus 100.0 3E-31 6.5E-36 256.3 20.5 218 40-282 148-389 (1140)
24 TIGR01525 ATPase-IB_hvy heavy 100.0 1.1E-30 2.4E-35 252.7 20.1 153 126-283 17-170 (556)
25 PRK10671 copA copper exporting 100.0 2.5E-30 5.5E-35 260.5 21.4 199 79-283 235-437 (834)
26 PF00122 E1-E2_ATPase: E1-E2 A 100.0 1.6E-30 3.5E-35 224.7 16.6 146 133-283 2-154 (230)
27 KOG0207|consensus 100.0 6E-30 1.3E-34 246.8 12.6 198 78-283 291-493 (951)
28 TIGR01652 ATPase-Plipid phosph 99.9 1.2E-26 2.6E-31 238.7 17.3 197 68-284 1-252 (1057)
29 KOG0209|consensus 99.9 3.3E-26 7.1E-31 217.9 13.8 200 52-274 161-391 (1160)
30 TIGR01494 ATPase_P-type ATPase 99.9 4.6E-26 1E-30 218.1 14.5 142 138-283 7-148 (499)
31 PLN03190 aminophospholipid tra 99.9 2.3E-22 5E-27 206.8 18.7 197 67-284 86-334 (1178)
32 COG2216 KdpB High-affinity K+ 99.9 1.4E-21 3.1E-26 178.8 11.6 185 89-279 30-218 (681)
33 PF00690 Cation_ATPase_N: Cati 99.6 1.3E-14 2.9E-19 101.6 7.9 67 36-104 3-69 (69)
34 KOG0210|consensus 99.5 1.8E-13 4E-18 129.6 14.1 177 63-257 74-303 (1051)
35 KOG0206|consensus 99.4 4.6E-13 1E-17 135.6 11.2 199 64-283 28-280 (1151)
36 smart00831 Cation_ATPase_N Cat 99.4 7.6E-13 1.6E-17 91.3 6.9 62 45-108 2-63 (64)
37 KOG4383|consensus 95.0 0.053 1.2E-06 53.0 6.2 83 125-207 86-197 (1354)
38 COG0272 Lig NAD-dependent DNA 82.7 2 4.3E-05 42.5 4.8 74 180-265 364-439 (667)
39 PF08006 DUF1700: Protein of u 79.1 34 0.00074 28.1 11.1 15 34-48 48-62 (181)
40 PF03120 DNA_ligase_OB: NAD-de 73.0 2.1 4.5E-05 30.7 1.3 21 180-200 46-67 (82)
41 PF11694 DUF3290: Protein of u 69.0 39 0.00085 27.1 8.0 69 126-194 45-116 (149)
42 PRK04980 hypothetical protein; 68.5 15 0.00031 27.5 5.0 56 166-226 19-81 (102)
43 PF01455 HupF_HypC: HupF/HypC 67.3 18 0.00039 24.8 5.0 32 166-197 17-51 (68)
44 PRK05886 yajC preprotein trans 66.0 24 0.00052 26.7 5.8 6 188-193 61-66 (109)
45 PRK11507 ribosome-associated p 64.7 9.6 0.00021 26.4 3.2 26 169-194 38-63 (70)
46 PF02699 YajC: Preprotein tran 63.1 18 0.0004 25.7 4.6 13 150-162 22-34 (82)
47 COG1862 YajC Preprotein transl 63.0 25 0.00055 26.0 5.4 22 142-163 21-42 (97)
48 PF15584 Imm44: Immunity prote 63.0 3.3 7.1E-05 30.2 0.7 20 186-205 13-32 (94)
49 TIGR01657 P-ATPase-V P-type AT 61.6 93 0.002 33.2 11.4 38 173-212 249-288 (1054)
50 COG1188 Ribosome-associated he 60.0 12 0.00026 27.8 3.2 35 169-205 35-69 (100)
51 PRK07956 ligA NAD-dependent DN 59.5 19 0.00042 36.2 5.6 25 181-205 365-391 (665)
52 PF13275 S4_2: S4 domain; PDB: 57.9 5.7 0.00012 27.1 1.1 23 170-192 35-57 (65)
53 PRK05585 yajC preprotein trans 57.7 38 0.00083 25.4 5.7 11 150-160 41-51 (106)
54 smart00306 HintN Hint (Hedgeho 57.2 15 0.00033 26.3 3.5 28 166-193 72-99 (100)
55 PRK06788 flagellar motor switc 42.1 54 0.0012 25.2 4.4 71 177-264 40-111 (119)
56 PF03453 MoeA_N: MoeA N-termin 41.7 36 0.00078 27.5 3.7 59 181-245 81-142 (162)
57 PRK08433 flagellar motor switc 41.3 26 0.00057 26.6 2.6 26 177-202 38-63 (111)
58 PF09926 DUF2158: Uncharacteri 40.5 19 0.00042 23.4 1.5 12 185-196 2-13 (53)
59 TIGR00074 hypC_hupF hydrogenas 40.1 67 0.0014 22.6 4.3 30 167-196 16-48 (76)
60 smart00532 LIGANc Ligase N fam 38.5 19 0.0004 34.3 1.7 21 180-200 359-380 (441)
61 PRK05585 yajC preprotein trans 38.5 1.7E+02 0.0037 22.0 8.5 21 143-163 31-51 (106)
62 PF07591 PT-HINT: Pretoxin HIN 37.4 28 0.0006 27.1 2.3 28 177-204 70-97 (130)
63 cd00081 Hint Hedgehog/Intein d 37.0 51 0.0011 25.0 3.8 28 166-193 72-99 (136)
64 PRK11479 hypothetical protein; 36.5 9.8 0.00021 33.7 -0.5 20 177-196 58-77 (274)
65 PRK14715 DNA polymerase II lar 35.9 30 0.00064 37.3 2.7 31 166-196 988-1018(1627)
66 COG2501 S4-like RNA binding pr 35.7 48 0.0011 23.1 3.0 26 169-194 38-63 (73)
67 TIGR02988 YaaA_near_RecF S4 do 34.6 43 0.00093 21.9 2.6 23 170-192 36-58 (59)
68 PF12368 DUF3650: Protein of u 34.0 37 0.0008 19.0 1.7 15 51-67 13-27 (28)
69 TIGR01525 ATPase-IB_hvy heavy 33.9 2.5E+02 0.0054 27.5 8.8 106 127-245 15-126 (556)
70 PRK14350 ligA NAD-dependent DN 33.1 25 0.00054 35.4 1.7 21 180-200 361-382 (669)
71 PRK06033 hypothetical protein; 33.0 19 0.00041 25.8 0.6 25 178-202 14-38 (83)
72 PF12911 OppC_N: N-terminal TM 32.3 81 0.0018 20.1 3.6 13 79-91 2-14 (56)
73 PRK05015 aminopeptidase B; Pro 32.2 60 0.0013 30.7 3.9 58 166-223 235-307 (424)
74 PRK15078 polysaccharide export 32.1 79 0.0017 29.5 4.7 39 166-204 211-263 (379)
75 PRK14898 DNA-directed RNA poly 31.9 55 0.0012 34.1 3.9 35 166-202 169-203 (858)
76 PRK15122 magnesium-transportin 31.8 5E+02 0.011 27.3 10.9 41 173-214 174-214 (903)
77 PF07385 DUF1498: Protein of u 31.6 97 0.0021 26.6 4.7 28 166-198 137-164 (225)
78 PRK08097 ligB NAD-dependent DN 31.4 28 0.00061 34.2 1.7 20 181-200 357-377 (562)
79 PRK15175 Vi polysaccharide exp 31.3 84 0.0018 29.1 4.7 29 166-194 198-236 (355)
80 PF12534 DUF3733: Leucine-rich 31.1 28 0.0006 23.8 1.1 31 66-96 8-38 (65)
81 KOG3416|consensus 30.5 31 0.00068 26.7 1.5 16 182-197 60-75 (134)
82 PF08006 DUF1700: Protein of u 29.9 3E+02 0.0066 22.3 9.5 29 38-74 42-70 (181)
83 PRK14351 ligA NAD-dependent DN 29.7 31 0.00068 34.8 1.7 26 180-205 386-413 (689)
84 KOG0210|consensus 29.5 5E+02 0.011 26.7 9.6 56 140-195 145-205 (1051)
85 PRK10680 molybdopterin biosynt 29.4 81 0.0018 29.7 4.4 26 181-206 87-114 (411)
86 TIGR00575 dnlj DNA ligase, NAD 29.2 32 0.00069 34.5 1.7 21 180-200 352-373 (652)
87 TIGR02480 fliN flagellar motor 29.2 20 0.00044 25.0 0.3 22 180-201 17-38 (77)
88 PRK10914 dipeptide transporter 28.9 3.2E+02 0.007 24.9 8.1 15 58-72 46-60 (339)
89 PRK10413 hydrogenase 2 accesso 28.1 1.1E+02 0.0025 21.8 3.9 30 167-196 19-55 (82)
90 PF12791 RsgI_N: Anti-sigma fa 27.9 1.2E+02 0.0025 19.5 3.8 35 166-200 6-42 (56)
91 PF06819 Arc_PepC: Archaeal Pe 27.6 41 0.0009 25.4 1.7 32 179-219 29-60 (110)
92 PRK10352 nickel transporter pe 27.5 4.6E+02 0.01 23.6 10.0 15 58-72 48-62 (314)
93 PRK15133 microcin C ABC transp 27.5 3.6E+02 0.0078 25.0 8.2 19 53-73 80-98 (364)
94 PF05568 ASFV_J13L: African sw 27.5 97 0.0021 24.7 3.7 34 146-181 51-84 (189)
95 smart00739 KOW KOW (Kyprides, 27.4 82 0.0018 16.6 2.5 23 184-206 2-24 (28)
96 COG3097 Uncharacterized protei 27.4 1.6E+02 0.0035 21.6 4.5 44 166-214 20-65 (106)
97 PRK10517 magnesium-transportin 27.4 7.5E+02 0.016 26.0 11.9 18 189-206 175-192 (902)
98 PF13829 DUF4191: Domain of un 27.1 4.1E+02 0.0088 22.9 9.3 13 78-90 6-18 (224)
99 cd00433 Peptidase_M17 Cytosol 27.1 1.3E+02 0.0028 29.0 5.3 56 166-221 284-354 (468)
100 COG1030 NfeD Membrane-bound se 27.0 5.6E+02 0.012 24.4 12.7 24 169-192 393-418 (436)
101 COG4709 Predicted membrane pro 26.6 3.8E+02 0.0083 22.4 11.4 9 39-47 43-51 (195)
102 PRK10409 hydrogenase assembly 26.0 1.2E+02 0.0027 22.0 3.9 30 167-196 16-54 (90)
103 PRK08983 fliN flagellar motor 25.6 30 0.00066 26.9 0.7 26 177-202 57-82 (127)
104 PF04835 Pox_A9: A9 protein co 25.4 1.6E+02 0.0034 19.2 3.8 19 78-96 19-37 (54)
105 PRK10348 ribosome-associated h 25.3 77 0.0017 24.9 2.9 27 170-197 36-62 (133)
106 TIGR01523 ATPase-IID_K-Na pota 25.3 6.8E+02 0.015 26.9 10.7 110 141-253 98-224 (1053)
107 TIGR02219 phage_NlpC_fam putat 24.9 38 0.00082 26.4 1.1 17 178-194 71-87 (134)
108 TIGR01511 ATPase-IB1_Cu copper 24.8 2.4E+02 0.0053 27.7 6.9 66 142-209 69-146 (562)
109 PRK14497 putative molybdopteri 24.4 1.1E+02 0.0023 30.1 4.3 26 180-205 87-114 (546)
110 TIGR01652 ATPase-Plipid phosph 24.3 3.5E+02 0.0076 28.9 8.4 118 78-209 18-145 (1057)
111 COG5038 Ca2+-dependent lipid-b 24.2 3.6E+02 0.0078 29.1 8.0 16 95-110 159-174 (1227)
112 cd00887 MoeA MoeA family. Memb 23.8 1.1E+02 0.0024 28.5 4.2 25 182-206 79-105 (394)
113 COG3768 Predicted membrane pro 23.4 5.4E+02 0.012 23.5 8.0 17 74-90 56-72 (350)
114 TIGR01517 ATPase-IIB_Ca plasma 22.7 6.2E+02 0.013 26.7 9.8 82 127-209 132-221 (941)
115 PRK00913 multifunctional amino 22.6 1.8E+02 0.0038 28.2 5.3 56 166-221 298-368 (483)
116 TIGR01524 ATPase-IIIB_Mg magne 22.6 9E+02 0.02 25.3 11.6 42 172-214 150-191 (867)
117 COG0474 MgtA Cation transport 22.4 6.2E+02 0.013 26.7 9.7 112 140-254 119-246 (917)
118 PLN03190 aminophospholipid tra 22.0 3.2E+02 0.0068 29.8 7.5 21 186-206 178-198 (1178)
119 TIGR01477 RIFIN variant surfac 22.0 1.7E+02 0.0036 27.0 4.8 27 131-157 317-343 (353)
120 PF01479 S4: S4 domain; Inter 22.0 52 0.0011 20.3 1.1 21 170-190 28-48 (48)
121 PF06738 DUF1212: Protein of u 21.9 4.4E+02 0.0095 21.4 9.4 30 33-67 64-93 (193)
122 PF14382 ECR1_N: Exosome compl 21.9 88 0.0019 18.9 2.1 24 184-208 2-25 (39)
123 PF06645 SPC12: Microsomal sig 21.8 2.4E+02 0.0052 19.7 4.6 17 95-111 15-31 (76)
124 COG0361 InfA Translation initi 21.8 52 0.0011 23.1 1.2 13 183-195 46-58 (75)
125 COG0522 RpsD Ribosomal protein 21.6 75 0.0016 26.9 2.3 31 169-199 120-150 (205)
126 PTZ00046 rifin; Provisional 21.6 1.7E+02 0.0037 27.0 4.7 27 131-157 322-348 (358)
127 PF14592 Chondroitinas_B: Chon 21.2 1.3E+02 0.0027 28.6 3.9 18 183-200 13-30 (425)
128 PRK08916 flagellar motor switc 21.2 44 0.00095 25.6 0.7 25 178-202 52-76 (116)
129 CHL00113 rps4 ribosomal protei 21.1 99 0.0021 26.1 3.0 25 170-194 116-140 (201)
130 PF00877 NLPC_P60: NlpC/P60 fa 21.0 1.3E+02 0.0029 21.8 3.4 37 176-213 44-80 (105)
131 PF06341 DUF1056: Protein of u 20.8 2.8E+02 0.0061 18.8 7.8 8 80-87 5-12 (63)
132 cd04451 S1_IF1 S1_IF1: Transla 20.8 79 0.0017 21.0 1.9 12 183-194 40-51 (64)
133 PRK05327 rpsD 30S ribosomal pr 20.7 1E+02 0.0022 26.0 3.0 27 169-195 119-145 (203)
134 PF02009 Rifin_STEVOR: Rifin/s 20.6 1.8E+02 0.004 26.2 4.7 28 130-157 262-289 (299)
135 PF11198 DUF2857: Protein of u 20.2 3.5E+02 0.0076 22.2 6.0 56 10-72 55-115 (180)
136 PRK06437 hypothetical protein; 20.2 1.5E+02 0.0032 20.0 3.2 27 165-192 34-60 (67)
No 1
>KOG0204|consensus
Probab=100.00 E-value=5.8e-53 Score=400.98 Aligned_cols=260 Identities=58% Similarity=0.894 Sum_probs=245.3
Q ss_pred ccCHHHHHHHHHhcChhhHHHHHhhcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhh
Q psy8121 12 GVTLRQLRELMEHRGREGIAKVNELGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQD 91 (285)
Q Consensus 12 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~ 91 (285)
+++.|+|..+.+.++.+ .++.+++++++|+.|+|+|..||+++.++..+|++.||.|.+|++++++||+++|+++++
T Consensus 79 ~i~~e~l~~i~~~~~~~---~L~~~gGv~gL~~~LKt~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD 155 (1034)
T KOG0204|consen 79 GIGAEELVKIVKEHDLK---ALNAYGGVEGLCKKLKTDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQD 155 (1034)
T ss_pred ccCHHHHHHHhhccchh---hhhhccCHHHHHHHhccCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhcc
Confidence 66779999999999865 478999999999999999999999888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEE
Q psy8121 92 VTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVI 171 (285)
Q Consensus 92 ~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~ 171 (285)
.++++|.++|++|+.+++|.+.. ..+|++++.|+++++++++++++.+|++++++++|++ .....++.|+
T Consensus 156 ~TLiIL~vaAvvSl~lgi~~~g~---------~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~-~k~~~k~~Vi 225 (1034)
T KOG0204|consen 156 VTLIILMVAAVVSLGLGIYTPGI---------EDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQK-EKRNIKFQVI 225 (1034)
T ss_pred chHHHHHHHHHHHHhhhhccCCC---------CcccccchhheeeEEEEEEEeecchhHHhhhhhhhhh-hhhceEEEEE
Confidence 99999999999999999997642 3489999999999988889999999999999999995 4445789999
Q ss_pred ECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCCCeEeeccEeeeeeEEEEEEE
Q psy8121 172 RQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTA 251 (285)
Q Consensus 172 rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~v~~Gt~v~~G~~~~~V~~ 251 (285)
|||+.++|+..|||||||+.++.||.+||||++++|+++.+|||+|||||.++.|....++++++||.+++|+++++|++
T Consensus 226 R~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfLlSGTkv~eGsgkMlVTa 305 (1034)
T KOG0204|consen 226 RGGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFLLSGTKVMEGSGKMLVTA 305 (1034)
T ss_pred ECCEEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCCCCeEeecceeecCcceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred ecCccHHHHHHHHHhhcccccchHHHHHhhhcC
Q psy8121 252 VGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVGL 284 (285)
Q Consensus 252 tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
+|.+|++|+++.++.+..++++|+|-+++++|.
T Consensus 306 VGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~ 338 (1034)
T KOG0204|consen 306 VGMNTQWGIIMTLLGAGGEEETPLQVKLNGLAT 338 (1034)
T ss_pred eeecchHhhHHHhhhcCCCcCCcHHHHHHHHHH
Confidence 999999999999999999999999999999874
No 2
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=1e-48 Score=397.04 Aligned_cols=272 Identities=46% Similarity=0.708 Sum_probs=240.7
Q ss_pred CCCCCCccccCHHHHHHHHHhcChhhHHHHHhhcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHH
Q psy8121 4 VDGRPAQYGVTLRQLRELMEHRGREGIAKVNELGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLT 83 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~ 83 (285)
.+++.++|+++.+++.++++.++ ..+.+++|++++++++.|+++...||+++++|+++|+++||+|+++.++++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~ 88 (941)
T TIGR01517 11 RDNFTDGFDVGVSILTDLTDIFK--RAPIYEKLGGAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQ 88 (941)
T ss_pred hhccCCCCCCCHHHHHHhcCchh--hHHHHHHhCCHHHHHHHhCcCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHH
Confidence 45688999999999999886544 2356888999999999999999899996678999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8121 84 LVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIE 163 (285)
Q Consensus 84 ~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~ 163 (285)
+++++|++++.++|+++++++++++++.+.. ........|+++++++++++++.+++++++|+++++.++|++...
T Consensus 89 ~~~~~f~~~~~~~l~~~ails~~~~~~~~~~----~~~~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~ 164 (941)
T TIGR01517 89 IVWAALSDQTLILLSVAAVVSLVLGLPEPGE----GKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKS 164 (941)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHhhccccc----ccCccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999887553210 011223479999999998888999999999999999999986432
Q ss_pred CCCeEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCCCeEeeccEeeee
Q psy8121 164 GEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVMEG 243 (285)
Q Consensus 164 ~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~v~~Gt~v~~G 243 (285)
+++++|+|||+++.|++++|||||+|.+++||+|||||+|++|+.+.||||+|||||.|+.|.++..|++|+||.|.+|
T Consensus 165 -~~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G 243 (941)
T TIGR01517 165 -AQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEG 243 (941)
T ss_pred -CCceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEee
Confidence 4689999999999999999999999999999999999999999668999999999999999999888899999999999
Q ss_pred eEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 244 SGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 244 ~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
+++++|++||.+|.+|||+++++.++ .++|+|+++++++
T Consensus 244 ~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~~~~~ 282 (941)
T TIGR01517 244 SGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKLSELA 282 (941)
T ss_pred EEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHHHHHH
Confidence 99999999999999999999998865 6789999888754
No 3
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=1.3e-47 Score=390.32 Aligned_cols=211 Identities=29% Similarity=0.419 Sum_probs=199.0
Q ss_pred cCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCC
Q psy8121 37 GGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADED 116 (285)
Q Consensus 37 ~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~ 116 (285)
.+++++++.|++++..||| ++|+++|+++||+|+++.++++++|+.++++|++++.++|+++++++++++
T Consensus 10 ~~~~~v~~~l~t~~~~GLs--~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~-------- 79 (1053)
T TIGR01523 10 DIADEAAEFIGTSIPEGLT--HDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMH-------- 79 (1053)
T ss_pred CCHHHHHHHhCcCcccCCC--HHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh--------
Confidence 6889999999999888999 899999999999999999989999999999999999999999999998765
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecCCC
Q psy8121 117 VFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGD 196 (285)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~ 196 (285)
.|.++++|+++++++++++++|++++++++++|+++.+ ++++|+|||++++|++++|||||||.|++||
T Consensus 80 ---------~~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~--~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd 148 (1053)
T TIGR01523 80 ---------DWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLAS--PMAHVIRNGKSDAIDSHDLVPGDICLLKTGD 148 (1053)
T ss_pred ---------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCC--CceEEEeCCeeeecCHhhCCCCCEEEECCCC
Confidence 78999999999999999999999999999999999865 7899999999999999999999999999999
Q ss_pred eeeccEEEEeeCceeEeccccCCCCCceeccCC-------------CCCeEeeccEeeeeeEEEEEEEecCccHHHHHHH
Q psy8121 197 LLPADGCLIQSNDLKVDESSLTGESDHVKKGEA-------------FDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFT 263 (285)
Q Consensus 197 ~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~-------------~~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~ 263 (285)
+|||||+|++++++.||||+|||||.|+.|.+. ..|++|+||.|.+|+++++|++||.+|++|+|.+
T Consensus 149 ~VPAD~rLi~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~ 228 (1053)
T TIGR01523 149 TIPADLRLIETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAA 228 (1053)
T ss_pred EeeccEEEEEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHH
Confidence 999999999998899999999999999999742 2478999999999999999999999999999999
Q ss_pred HHhhc
Q psy8121 264 LLGAA 268 (285)
Q Consensus 264 ~~~~~ 268 (285)
++...
T Consensus 229 ~~~~~ 233 (1053)
T TIGR01523 229 GLQGD 233 (1053)
T ss_pred HHhhh
Confidence 99754
No 4
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=2e-46 Score=378.26 Aligned_cols=227 Identities=26% Similarity=0.444 Sum_probs=211.3
Q ss_pred cCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhccCCCC
Q psy8121 37 GGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEAL-QDVTLIILEIAALVSLGLSFYKPADE 115 (285)
Q Consensus 37 ~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~-~~~~~~ll~~~ai~s~~~~~~~~~~~ 115 (285)
.+.+++++.|++++..|||+ ++|+++|+++||+|+++.++++++|+.++++| ++|+.++|+++++++++++
T Consensus 7 ~~~~~v~~~l~t~~~~GLs~-~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g------- 78 (884)
T TIGR01522 7 LSVEETCSKLQTDLQNGLNS-SQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMG------- 78 (884)
T ss_pred CCHHHHHHHhCcCcccCCCc-HHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHc-------
Confidence 58899999999999899984 47899999999999999998899999999999 9999999999999998775
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecCC
Q psy8121 116 DVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYG 195 (285)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G 195 (285)
.|.+++++++++++++++++++++++++.+++|.++.+ .+++|+|||++++|++++|||||+|.+++|
T Consensus 79 ----------~~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~--~~~~ViRdg~~~~I~~~eLv~GDiv~l~~G 146 (884)
T TIGR01522 79 ----------NIDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVP--PECHLIREGKLEHVLASTLVPGDLVCLSVG 146 (884)
T ss_pred ----------chhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCC--CeeEEEECCEEEEEEHHHCccCCEEEecCC
Confidence 67888888888888899999999999999999998765 789999999999999999999999999999
Q ss_pred CeeeccEEEEeeCceeEeccccCCCCCceeccCCC------------CCeEeeccEeeeeeEEEEEEEecCccHHHHHHH
Q psy8121 196 DLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAF------------DPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFT 263 (285)
Q Consensus 196 ~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~------------~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~ 263 (285)
|+|||||+|++|+++.||||+|||||.|+.|.++. +|++|+||.|.+|+++++|++||.+|.+|+|.+
T Consensus 147 d~IPaDg~ii~g~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~ 226 (884)
T TIGR01522 147 DRVPADLRIVEAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFK 226 (884)
T ss_pred CEEeeeEEEEEcCceEEEcccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHH
Confidence 99999999999987899999999999999998752 369999999999999999999999999999999
Q ss_pred HHhhcccccchHHHHHhhhc
Q psy8121 264 LLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~ 283 (285)
++++++..++|+|+.+++++
T Consensus 227 ~v~~~~~~kt~lq~~l~~l~ 246 (884)
T TIGR01522 227 MMQAIEKPKTPLQKSMDLLG 246 (884)
T ss_pred HhccCCCCCCcHHHHHHHHH
Confidence 99999999999999998875
No 5
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=3.5e-46 Score=375.30 Aligned_cols=225 Identities=26% Similarity=0.401 Sum_probs=211.0
Q ss_pred cCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCC
Q psy8121 37 GGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADED 116 (285)
Q Consensus 37 ~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~ 116 (285)
.+.+++++.|++++ +||| ++|+++|+++||+|+++.++++++|+.++++|++|+.+++++++++++++.
T Consensus 52 ~~~~~v~~~l~~~~-~GLs--~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~-------- 120 (902)
T PRK10517 52 MPEEELWKTFDTHP-EGLN--EAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATE-------- 120 (902)
T ss_pred CCHHHHHHHhCCCC-CCCC--HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc--------
Confidence 48999999999987 6999 899999999999999999999999999999999999999999999988764
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEC------CEEEEEEcCCcccCcEE
Q psy8121 117 VFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQ------GEVKQISVGDIVVGDIC 190 (285)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rd------g~~~~i~~~~lv~GDiv 190 (285)
.|.++++|+++++++.++++++++++++++++|+++.+ ++++|+|| |++++|++++|||||+|
T Consensus 121 ---------~~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~--~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV 189 (902)
T PRK10517 121 ---------DLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVS--NTATVLRVINDKGENGWLEIPIDQLVPGDII 189 (902)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CeEEEEECCccCCCCeEEEEEHHhCCCCCEE
Confidence 68899999999999999999999999999999999876 78999999 78999999999999999
Q ss_pred EecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCC-----------CCeEeeccEeeeeeEEEEEEEecCccHHH
Q psy8121 191 QIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAF-----------DPMVLSGTHVMEGSGKMLVTAVGVNSQAG 259 (285)
Q Consensus 191 ~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~-----------~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g 259 (285)
.+++||+|||||+|++|+++.||||+|||||.|+.|.++. +|++|+||.|.+|+++++|++||.+|++|
T Consensus 190 ~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~G 269 (902)
T PRK10517 190 KLAAGDMIPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFG 269 (902)
T ss_pred EECCCCEEeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHH
Confidence 9999999999999999988899999999999999998753 36899999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHHHHhhhc
Q psy8121 260 IIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 260 ~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
+|++++++++.+++|+|+.+++++
T Consensus 270 kI~~~v~~~~~~~t~lq~~~~~i~ 293 (902)
T PRK10517 270 QLAGRVSEQDSEPNAFQQGISRVS 293 (902)
T ss_pred HHHHHhhccCCCCCcHHHHHHHHH
Confidence 999999999999999999999864
No 6
>KOG0202|consensus
Probab=100.00 E-value=8.5e-48 Score=365.96 Aligned_cols=226 Identities=31% Similarity=0.520 Sum_probs=213.5
Q ss_pred cCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCC
Q psy8121 37 GGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADED 116 (285)
Q Consensus 37 ~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~ 116 (285)
.+++|.+..|.+++.+||+ ++|+.+|+++||.|+++.....|+|+.+++||.+++..+|+++|++|+++.
T Consensus 7 ~~v~e~~~~f~t~~~~GLt--~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~-------- 76 (972)
T KOG0202|consen 7 KSVSEVLAEFGTDLEEGLT--SDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLA-------- 76 (972)
T ss_pred CcHHHHHHHhCcCcccCCC--HHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------
Confidence 6789999999999999999 899999999999999999999999999999999999999999999999997
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecCCC
Q psy8121 117 VFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGD 196 (285)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~ 196 (285)
.|.+++.|.++++++++++++|||+++|++++|+++.+ +.++|+|+|+.+.+++++|||||||.++-||
T Consensus 77 ---------~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p--~~~~V~R~gk~~~i~A~eLVPGDiV~l~vGD 145 (972)
T KOG0202|consen 77 ---------DFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVP--PMAHVLRSGKLQHILARELVPGDIVELKVGD 145 (972)
T ss_pred ---------hcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCC--ccceEEecCcccceehhccCCCCEEEEecCC
Confidence 45577888888888999999999999999999999866 8899999999999999999999999999999
Q ss_pred eeeccEEEEeeCceeEeccccCCCCCceeccC------------CCCCeEeeccEeeeeeEEEEEEEecCccHHHHHHHH
Q psy8121 197 LLPADGCLIQSNDLKVDESSLTGESDHVKKGE------------AFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTL 264 (285)
Q Consensus 197 ~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~------------~~~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~ 264 (285)
+||||.|+++..++.+|||+|||||.|+.|.. ++.|++|+||.|..|.++++|+.||.+|++|+|.+.
T Consensus 146 kVPADlRl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~ 225 (972)
T KOG0202|consen 146 KIPADLRLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKM 225 (972)
T ss_pred ccccceeEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHH
Confidence 99999999999999999999999999999954 246899999999999999999999999999999999
Q ss_pred HhhcccccchHHHHHhhhc
Q psy8121 265 LGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~ 283 (285)
+++.++++||+|++++.+.
T Consensus 226 m~~~e~~kTPLqk~ld~~G 244 (972)
T KOG0202|consen 226 MQATESPKTPLQKKLDEFG 244 (972)
T ss_pred HhccCCCCCcHHHHHHHHH
Confidence 9999999999999998763
No 7
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=8.2e-46 Score=372.32 Aligned_cols=224 Identities=24% Similarity=0.337 Sum_probs=209.2
Q ss_pred cCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCC
Q psy8121 37 GGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADED 116 (285)
Q Consensus 37 ~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~ 116 (285)
.+++++++.|+++. +||+ ++|+.+|+++||+|+++.++++++|+.++++|++|+.++|++++++++++.
T Consensus 18 ~~~~~~~~~l~~~~-~GLs--~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~-------- 86 (867)
T TIGR01524 18 MGKETLLRKLGVHE-TGLT--NVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTD-------- 86 (867)
T ss_pred CCHHHHHHHhCCCC-CCCC--HHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------
Confidence 58999999999986 6999 899999999999999999988899999999999999999999999888664
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEE------CCEEEEEEcCCcccCcEE
Q psy8121 117 VFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIR------QGEVKQISVGDIVVGDIC 190 (285)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~r------dg~~~~i~~~~lv~GDiv 190 (285)
.|.++++++++++++.+++++++++++++.++|+++.+ .+++|+| ||++++|++++|||||+|
T Consensus 87 ---------~~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~--~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV 155 (867)
T TIGR01524 87 ---------DLEATVIIALMVLASGLLGFIQESRAERAAYALKNMVK--NTATVLRVINENGNGSMDEVPIDALVPGDLI 155 (867)
T ss_pred ---------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CeeEEEEecccCCCCeEEEEEhhcCCCCCEE
Confidence 78899999999999999999999999999999999876 6899999 999999999999999999
Q ss_pred EecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCC-----------CCeEeeccEeeeeeEEEEEEEecCccHHH
Q psy8121 191 QIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAF-----------DPMVLSGTHVMEGSGKMLVTAVGVNSQAG 259 (285)
Q Consensus 191 ~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~-----------~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g 259 (285)
.+++||+|||||+|++|+++.||||+|||||.|+.|.++. +|++|+||.|.+|+++++|++||.+|++|
T Consensus 156 ~l~~Gd~VPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~g 235 (867)
T TIGR01524 156 ELAAGDIIPADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFG 235 (867)
T ss_pred EECCCCEEcccEEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHH
Confidence 9999999999999999988899999999999999998753 36899999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHHHHhhhc
Q psy8121 260 IIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 260 ~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
+|++++++ ...++|+|+.+++++
T Consensus 236 ki~~~v~~-~~~~t~lq~~~~~i~ 258 (867)
T TIGR01524 236 SLAIAATE-RRGQTAFDKGVKSVS 258 (867)
T ss_pred HHHHHhhC-CCCCCcHHHHHHHHH
Confidence 99999988 778899999998864
No 8
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=8.7e-45 Score=365.60 Aligned_cols=235 Identities=23% Similarity=0.393 Sum_probs=211.4
Q ss_pred cCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCC
Q psy8121 37 GGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADED 116 (285)
Q Consensus 37 ~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~ 116 (285)
.+.+++++.|+++. +||| ++|+++|+++||+|+++.++++++|+.++++|++|+.++|++++++++++++|.+..
T Consensus 30 ~~~~~v~~~l~~~~-~GLs--~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~-- 104 (903)
T PRK15122 30 NSLEETLANLNTHR-QGLT--EEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLR-- 104 (903)
T ss_pred CCHHHHHHHhCCCC-CCCC--HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc--
Confidence 58999999999985 7999 899999999999999999988999999999999999999999999999987664310
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECC------EEEEEEcCCcccCcEE
Q psy8121 117 VFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQG------EVKQISVGDIVVGDIC 190 (285)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg------~~~~i~~~~lv~GDiv 190 (285)
.+....|.++++|+++++++.+++++++++++++.++|+++.+ .+++|+||| +++.|++++|||||+|
T Consensus 105 ----~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~--~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV 178 (903)
T PRK15122 105 ----RGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVR--TTATVLRRGHAGAEPVRREIPMRELVPGDIV 178 (903)
T ss_pred ----CCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CceEEEECCccCCCCeEEEEEHHHCCCCCEE
Confidence 0111369999999999999999999999999999999999876 679999994 7899999999999999
Q ss_pred EecCCCeeeccEEEEeeCceeEeccccCCCCCceeccC--C-------------------CCCeEeeccEeeeeeEEEEE
Q psy8121 191 QIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGE--A-------------------FDPMVLSGTHVMEGSGKMLV 249 (285)
Q Consensus 191 ~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~--~-------------------~~~~v~~Gt~v~~G~~~~~V 249 (285)
.+++||+|||||+|++|+++.||||+|||||.|+.|.+ + ..|++|+||.|.+|+++++|
T Consensus 179 ~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V 258 (903)
T PRK15122 179 HLSAGDMIPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVV 258 (903)
T ss_pred EECCCCEEeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEE
Confidence 99999999999999999888999999999999999975 1 13789999999999999999
Q ss_pred EEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 250 TAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 250 ~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
++||.+|++|+|.++++. ...++|+|+++++++
T Consensus 259 ~atG~~T~~gkI~~~v~~-~~~~t~l~~~l~~i~ 291 (903)
T PRK15122 259 VATGSRTYFGSLAKSIVG-TRAQTAFDRGVNSVS 291 (903)
T ss_pred EEeccccHhhHHHHHhcC-CCCCCcHHHHHHHHH
Confidence 999999999999999987 677899998777654
No 9
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=3e-44 Score=365.69 Aligned_cols=240 Identities=24% Similarity=0.313 Sum_probs=215.4
Q ss_pred hcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCC
Q psy8121 36 LGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADE 115 (285)
Q Consensus 36 ~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~ 115 (285)
-.+.+++++.|++++..||+ ++|+++|+++||+|+++.++++++|+.++++|++++.++|++++++++++..+....+
T Consensus 19 ~~~~~~~~~~l~t~~~~GLs--~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~~ 96 (997)
T TIGR01106 19 KLSLDELERKYGTDLSKGLS--AARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQASTE 96 (997)
T ss_pred hCCHHHHHHHhCcCcccCCC--HHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccC
Confidence 36899999999999989999 8999999999999999998899999999999999999999999999887654432100
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecCC
Q psy8121 116 DVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYG 195 (285)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G 195 (285)
.......|++++++++++++++++++++++++++..++|+++.+ .+++|+|||+++.|++++|||||+|.+++|
T Consensus 97 ----~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~--~~~~ViRdg~~~~I~~~~lv~GDiv~l~~G 170 (997)
T TIGR01106 97 ----EEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVP--QQALVIRDGEKMSINAEQVVVGDLVEVKGG 170 (997)
T ss_pred ----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CeeEEEECCEEEEeeHHHCCCCCEEEECCC
Confidence 01122378999999999999999999999999999999998765 789999999999999999999999999999
Q ss_pred CeeeccEEEEeeCceeEeccccCCCCCceeccCCC--------CCeEeeccEeeeeeEEEEEEEecCccHHHHHHHHHhh
Q psy8121 196 DLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAF--------DPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGA 267 (285)
Q Consensus 196 ~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~--------~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~ 267 (285)
|+|||||++++|+++.||||+|||||.|+.|.++. .|++|+||.|++|+++++|++||.+|.+|+|.++++.
T Consensus 171 d~IPaD~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~ 250 (997)
T TIGR01106 171 DRIPADLRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASG 250 (997)
T ss_pred CEEeeeEEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhh
Confidence 99999999999987899999999999999997752 3689999999999999999999999999999999999
Q ss_pred cccccchHHHHHhhhc
Q psy8121 268 AVDEQEQEIKKKRKVG 283 (285)
Q Consensus 268 ~~~~~~~~~~~~~~~~ 283 (285)
++.+++|+|+++++++
T Consensus 251 ~~~~~~pl~~~~~~~~ 266 (997)
T TIGR01106 251 LENGKTPIAIEIEHFI 266 (997)
T ss_pred cccCCCcHHHHHHHHH
Confidence 9899999999888764
No 10
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=1.7e-44 Score=358.41 Aligned_cols=207 Identities=27% Similarity=0.445 Sum_probs=194.5
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHH
Q psy8121 53 GLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLA 132 (285)
Q Consensus 53 GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (285)
||| ++|+++|+++||+|+++.+ ++++|+.++++|++|+.++|+++++++++++ .|.++++
T Consensus 1 GLs--~~ea~~r~~~~G~N~~~~~-~~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~-----------------~~~~~~~ 60 (755)
T TIGR01647 1 GLT--SAEAKKRLAKYGPNELPEK-KVSPLLKFLGFFWNPLSWVMEAAAIIAIALE-----------------NWVDFVI 60 (755)
T ss_pred CcC--HHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhhc-----------------chhhhhh
Confidence 899 8999999999999999985 4567899999999999999999999988775 6888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeE
Q psy8121 133 ILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKV 212 (285)
Q Consensus 133 il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~v 212 (285)
++++++++..+++++++++++..++|+++.+ ++++|+|||++++|++++|||||+|.+++||+|||||+|++|+++.|
T Consensus 61 i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~--~~~~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g~~~~V 138 (755)
T TIGR01647 61 ILGLLLLNATIGFIEENKAGNAVEALKQSLA--PKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDYIQV 138 (755)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCC--CeEEEEECCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEecCceEE
Confidence 9999999999999999999999999998765 78999999999999999999999999999999999999999987899
Q ss_pred eccccCCCCCceeccCCCCCeEeeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 213 DESSLTGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 213 deS~LTGEs~pv~k~~~~~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
|||+|||||.|+.|.++ +.+|+||.|.+|+++++|++||.+|++|+|.+++++++..++|+|+.+++++
T Consensus 139 DeS~LTGES~PV~K~~~--~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~ 207 (755)
T TIGR01647 139 DQAALTGESLPVTKKTG--DIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIG 207 (755)
T ss_pred EcccccCCccceEeccC--CeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHH
Confidence 99999999999999987 8999999999999999999999999999999999999999999999998875
No 11
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-41 Score=341.61 Aligned_cols=230 Identities=33% Similarity=0.530 Sum_probs=208.8
Q ss_pred cCHH--HHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCC
Q psy8121 37 GGIQ--EICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPAD 114 (285)
Q Consensus 37 ~~~~--~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~ 114 (285)
.+++ +++..+.+++..||+ ++|+.+|++.||+|+++..+..++|..++.+|++++.++|+++++++++++.+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~GLs--~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~~~~- 102 (917)
T COG0474 26 LSVERNELLLELFTSPTTGLS--EEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVDA- 102 (917)
T ss_pred cccchhhHHHhhcCCcccCCC--HHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-
Confidence 3455 889999999999999 89999999999999999999999999999999999999999999999888755321
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecC
Q psy8121 115 EDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKY 194 (285)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~ 194 (285)
. .++.+++.+++++.+++++|+++++++.++|+++.+ .+++|+|||++++|++++|||||||.+++
T Consensus 103 -----------~-~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~--~~~~V~R~g~~~~i~a~eLVpGDiV~l~~ 168 (917)
T COG0474 103 -----------G-VDAIVILLVVVINALLGFVQEYRAEKALEALKKMSS--PKAKVLRDGKFVEIPASELVPGDIVLLEA 168 (917)
T ss_pred -----------C-cceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CceEEEeCCcEEEecHHHCCCCcEEEECC
Confidence 0 344566666777889999999999999999999875 78999999999999999999999999999
Q ss_pred CCeeeccEEEEeeCceeEeccccCCCCCceeccC------------CCCCeEeeccEeeeeeEEEEEEEecCccHHHHHH
Q psy8121 195 GDLLPADGCLIQSNDLKVDESSLTGESDHVKKGE------------AFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIF 262 (285)
Q Consensus 195 G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~------------~~~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~ 262 (285)
||+||||+++++++++.||||+|||||.|+.|.+ +.+|++|+||.+.+|++.++|++||.+|++|++.
T Consensus 169 gd~vPAD~rLl~~~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia 248 (917)
T COG0474 169 GDVVPADLRLLESSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIA 248 (917)
T ss_pred CCccccceEEEEecCceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHH
Confidence 9999999999999999999999999999999973 3469999999999999999999999999999999
Q ss_pred HHHhhcccccchHHHHHhhhc
Q psy8121 263 TLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~ 283 (285)
+++......++|+|+.+++++
T Consensus 249 ~~~~~~~~~~t~l~~~l~~~~ 269 (917)
T COG0474 249 RLLPTKKEVKTPLQRKLNKLG 269 (917)
T ss_pred HhhccccccCCcHHHHHHHHH
Confidence 999988899999999998875
No 12
>KOG0205|consensus
Probab=100.00 E-value=3.7e-40 Score=306.02 Aligned_cols=228 Identities=26% Similarity=0.395 Sum_probs=204.1
Q ss_pred hcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCC
Q psy8121 36 LGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADE 115 (285)
Q Consensus 36 ~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~ 115 (285)
-+.++++.+.|++... ||+ ++|+++|+++||+|++..++.+.|. .|+..+.+|..|+...+|++++.+.
T Consensus 20 ~~p~eeVfeeL~~t~~-GLt--~~E~~eRlk~fG~NkleEkken~~l-KFl~Fm~~PlswVMEaAAimA~~La------- 88 (942)
T KOG0205|consen 20 AIPIEEVFEELLCTRE-GLT--SDEVEERLKIFGPNKLEEKKESKFL-KFLGFMWNPLSWVMEAAAIMAIGLA------- 88 (942)
T ss_pred cCchhhhHHHHhcCCC-CCc--hHHHHHHHHhhCchhhhhhhhhHHH-HHHHHHhchHHHHHHHHHHHHHHHh-------
Confidence 4678999999998865 999 8999999999999999987655554 4566777888888889999887775
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecCC
Q psy8121 116 DVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYG 195 (285)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G 195 (285)
++++...+|-++..|.+++++++.+++++|+++.....+|.+-+. +++.|+|||+|.++++.+||||||+.++.|
T Consensus 89 ---ng~~~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA--~KakVlRDGkw~E~eAs~lVPGDIlsik~G 163 (942)
T KOG0205|consen 89 ---NGGGRPPDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLA--PKAKVLRDGKWSEQEASILVPGDILSIKLG 163 (942)
T ss_pred ---cCCCCCcchhhhhhhheeeeecceeeeeeccccchHHHHHHhccC--cccEEeecCeeeeeeccccccCceeeeccC
Confidence 233445689999999999999999999999999999999987665 788999999999999999999999999999
Q ss_pred CeeeccEEEEeeCceeEeccccCCCCCceeccCCCCCeEeeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchH
Q psy8121 196 DLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQE 275 (285)
Q Consensus 196 ~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~ 275 (285)
++|||||++++|..|.||+|+|||||.|+.|.++ +.+|+||+|.+|++.++|++||.+|+.|+-++++.. ......+
T Consensus 164 dIiPaDaRLl~gD~LkiDQSAlTGESLpvtKh~g--d~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHF 240 (942)
T KOG0205|consen 164 DIIPADARLLEGDPLKIDQSALTGESLPVTKHPG--DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHF 240 (942)
T ss_pred CEecCccceecCCccccchhhhcCCccccccCCC--CceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccH
Confidence 9999999999999999999999999999999998 679999999999999999999999999999999977 7888999
Q ss_pred HHHHhhh
Q psy8121 276 IKKKRKV 282 (285)
Q Consensus 276 ~~~~~~~ 282 (285)
|+-+..+
T Consensus 241 qkVLt~I 247 (942)
T KOG0205|consen 241 QKVLTGI 247 (942)
T ss_pred HHHHHhh
Confidence 9877654
No 13
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=2.3e-38 Score=324.43 Aligned_cols=209 Identities=22% Similarity=0.313 Sum_probs=179.5
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHH
Q psy8121 51 SEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEG 130 (285)
Q Consensus 51 ~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (285)
..||+ ++|+.+|+++||+|+++.+ .++||+++++++.+|+.+++++++++++ +. .+|+++
T Consensus 137 ~~GLs--~~e~~~r~~~yG~N~i~~~-~~s~~~ll~~~~~~p~~i~~i~~~~l~~-~~----------------~~~~~~ 196 (1054)
T TIGR01657 137 SNGLT--TGDIAQRKAKYGKNEIEIP-VPSFLELLKEEVLHPFYVFQVFSVILWL-LD----------------EYYYYS 196 (1054)
T ss_pred ccCCC--HHHHHHHHHhcCCCeeecC-CCCHHHHHHHHHhchHHHHHHHHHHHHH-hh----------------hhHHHH
Confidence 36999 8999999999999999997 4799999999999999888777644433 21 168888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEec--CCCeeeccEEEEeeC
Q psy8121 131 LAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIK--YGDLLPADGCLIQSN 208 (285)
Q Consensus 131 ~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~--~G~~iPaDg~il~g~ 208 (285)
++++++++++.++..+++++..+.+++ +...+..++|+|||++++|++++|||||+|.++ +|++|||||+|++|+
T Consensus 197 ~~i~~i~~~~~~~~~~~~~k~~~~L~~---~~~~~~~v~V~Rdg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g~ 273 (1054)
T TIGR01657 197 LCIVFMSSTSISLSVYQIRKQMQRLRD---MVHKPQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGS 273 (1054)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCeeEEEEECCEEEEEEcccCCCCCEEEEecCCCCEecceEEEEeCc
Confidence 988888888777777777666555444 443447899999999999999999999999999 999999999999997
Q ss_pred ceeEeccccCCCCCceeccCC----------------CCCeEeeccEeee-------eeEEEEEEEecCccHHHHHHHHH
Q psy8121 209 DLKVDESSLTGESDHVKKGEA----------------FDPMVLSGTHVME-------GSGKMLVTAVGVNSQAGIIFTLL 265 (285)
Q Consensus 209 ~l~vdeS~LTGEs~pv~k~~~----------------~~~~v~~Gt~v~~-------G~~~~~V~~tG~~T~~g~i~~~~ 265 (285)
+.||||+|||||.|+.|.+. ++|++|+||.|++ |.+.++|++||.+|..|+|++++
T Consensus 274 -~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T~~G~i~~~i 352 (1054)
T TIGR01657 274 -CIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFSTSKGQLVRSI 352 (1054)
T ss_pred -EEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccccchHHHHHh
Confidence 69999999999999999752 2468999999995 78999999999999999999999
Q ss_pred hhcccccchHHHHHhhhc
Q psy8121 266 GAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~ 283 (285)
......++++++...++.
T Consensus 353 ~~~~~~~~~~~~~~~~~~ 370 (1054)
T TIGR01657 353 LYPKPRVFKFYKDSFKFI 370 (1054)
T ss_pred hCCCCCCCchHHHHHHHH
Confidence 998889999999877664
No 14
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=3.2e-36 Score=305.02 Aligned_cols=190 Identities=31% Similarity=0.457 Sum_probs=172.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy8121 85 VWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEG 164 (285)
Q Consensus 85 ~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~ 164 (285)
++++|++++.++|++++++|++++++.. .......|+++++|++++++++++++++++++++..++|+++.+
T Consensus 1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~-------~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~- 72 (917)
T TIGR01116 1 VLEQFEDLLVRILLLAACVSFVLAWFEE-------GEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYES- 72 (917)
T ss_pred ChHHHhCHHHHHHHHHHHHHHHHhcccc-------cccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 3688999999999999999998875531 01122479999999999999999999999999999999998754
Q ss_pred CCeEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCC-----------CCCe
Q psy8121 165 EHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEA-----------FDPM 233 (285)
Q Consensus 165 ~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~-----------~~~~ 233 (285)
++++|+|||+++.|++++|||||+|.+++||+|||||++++|+.+.||||+|||||.|+.|.++ .+|+
T Consensus 73 -~~~~ViRdg~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~ 151 (917)
T TIGR01116 73 -EHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNM 151 (917)
T ss_pred -CceEEEECCEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEecceEEEcccccCCCCcccccccccCccccCcccccce
Confidence 7899999999999999999999999999999999999999998789999999999999999764 2389
Q ss_pred EeeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 234 VLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 234 v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
+|+||.+.+|+++++|++||.+|.+|+|.++++.++.+++|+|+++++++
T Consensus 152 l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~~~~t~lq~~l~~~~ 201 (917)
T TIGR01116 152 LFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAEQEDTPLQKKLDEFG 201 (917)
T ss_pred eeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999864
No 15
>KOG0203|consensus
Probab=100.00 E-value=3.2e-36 Score=286.78 Aligned_cols=241 Identities=25% Similarity=0.342 Sum_probs=213.7
Q ss_pred hhcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCC
Q psy8121 35 ELGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPAD 114 (285)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~ 114 (285)
|..+++|+++++.++.++||+ ++++.+++.+.|+|.+++|+..|-|..|.+++++.+.++++++++++++.+.+....
T Consensus 40 H~~~~~eL~~r~~t~~~~Glt--~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~~s~ 117 (1019)
T KOG0203|consen 40 HKLSVDELCERYGTSVSQGLT--SQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQAST 117 (1019)
T ss_pred ccCCHHHHHHHhcCChhhccc--HHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccc
Confidence 457999999999999999999 999999999999999999999999999999999999999999999999888776543
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecC
Q psy8121 115 EDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKY 194 (285)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~ 194 (285)
.+. ......+-+.++..++++..++.++|+.+..+.+++++++++ +.++|+|||+...+.+++||+||+|.++-
T Consensus 118 ~~~----~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P--~~~~ViRdg~k~~i~~eelVvGD~v~vk~ 191 (1019)
T KOG0203|consen 118 EDD----PSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVP--QQALVIRDGEKMTINAEELVVGDLVEVKG 191 (1019)
T ss_pred CCC----CCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccch--hhheeeecceeEEechhhcccccceeecc
Confidence 221 122234444555555555667888999999999999999987 78999999999999999999999999999
Q ss_pred CCeeeccEEEEeeCceeEeccccCCCCCceeccCC--------CCCeEeeccEeeeeeEEEEEEEecCccHHHHHHHHHh
Q psy8121 195 GDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEA--------FDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLG 266 (285)
Q Consensus 195 G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~--------~~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~ 266 (285)
||+||||.+++++..+++|+|+|||||+|...++. ..|+.|.+|.+++|.++++|++||++|.+|+|+.+-.
T Consensus 192 GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~ 271 (1019)
T KOG0203|consen 192 GDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLAS 271 (1019)
T ss_pred CCcccceeEEEEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhc
Confidence 99999999999999999999999999999998763 4689999999999999999999999999999999999
Q ss_pred hcccccchHHHHHhhhc
Q psy8121 267 AAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 267 ~~~~~~~~~~~~~~~~~ 283 (285)
.-...++|+++.++++.
T Consensus 272 ~~~~~~t~~~~ei~~fi 288 (1019)
T KOG0203|consen 272 GLEDGKTPIAKEIEHFI 288 (1019)
T ss_pred cCCCCCCcchhhhhchH
Confidence 98999999999988764
No 16
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=7e-33 Score=269.19 Aligned_cols=188 Identities=22% Similarity=0.309 Sum_probs=153.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhh
Q psy8121 87 EALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFN----DYTKERQFRGLQSRI 162 (285)
Q Consensus 87 ~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~----~~~~~k~~~~l~~~~ 162 (285)
..+++|+.++++++++++++++.|....+ ... ..+++++.++++++++.++..++ +++.+++.++|+++.
T Consensus 28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~----~~~--~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~ 101 (673)
T PRK14010 28 YMIKNPIMFVVEVGMLLALGLTIYPDLFH----QES--VSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQ 101 (673)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHhhhcc----ccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45678999999999999998886632110 000 01244566666666677777666 577777788888765
Q ss_pred cCCCeEE-EEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCC-CCeEeeccEe
Q psy8121 163 EGEHKFS-VIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAF-DPMVLSGTHV 240 (285)
Q Consensus 163 ~~~~~~~-V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~-~~~v~~Gt~v 240 (285)
+ +.+++ |+|||++++|++++|+|||+|.+++||+|||||++++|++ .||||+|||||.|+.|.++. .+.+|+||.|
T Consensus 102 ~-~~~a~~v~rdg~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~-~VDESaLTGES~PV~K~~g~d~~~V~aGT~v 179 (673)
T PRK14010 102 T-EMKARRIKQDGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA-TVDESAITGESAPVIKESGGDFDNVIGGTSV 179 (673)
T ss_pred C-cceEEEEEeCCEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcce-EEecchhcCCCCceeccCCCccCeeecCcee
Confidence 4 22565 6799999999999999999999999999999999999986 99999999999999999862 2349999999
Q ss_pred eeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhh
Q psy8121 241 MEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKV 282 (285)
Q Consensus 241 ~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~ 282 (285)
.+|+++++|+++|.+|++|||+++++.++.+++|.|.....+
T Consensus 180 ~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l 221 (673)
T PRK14010 180 ASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTL 221 (673)
T ss_pred ecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999866554
No 17
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.4e-32 Score=267.26 Aligned_cols=192 Identities=19% Similarity=0.227 Sum_probs=160.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy8121 86 WEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGE 165 (285)
Q Consensus 86 ~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~ 165 (285)
..+|++|++++++++++++++++++..... ........|..++++++.+++..+++.+++++.++++++|+++.+ .
T Consensus 28 ~~~~~~p~~~vl~~~a~ls~~~~~~~~~~~---~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~-~ 103 (679)
T PRK01122 28 RVQIRNPVMFVVEVGSILTTILTIAPLLFQ---SGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKK-D 103 (679)
T ss_pred HHHhhChHHHHHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C
Confidence 456789999999999999999886532110 001112345555666666666667777888888899999988654 2
Q ss_pred CeEEEEECCE-EEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCC-CCeEeeccEeeee
Q psy8121 166 HKFSVIRQGE-VKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAF-DPMVLSGTHVMEG 243 (285)
Q Consensus 166 ~~~~V~rdg~-~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~-~~~v~~Gt~v~~G 243 (285)
.+++|+|||+ +++|++++|++||+|.+++||+|||||++++|. ..||||+|||||.|+.|.++. .+.+|+||.|.+|
T Consensus 104 ~~a~vir~g~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vieG~-a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G 182 (679)
T PRK01122 104 TFARKLREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEGV-ASVDESAITGESAPVIRESGGDFSSVTGGTRVLSD 182 (679)
T ss_pred CeEEEEECCCEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEEEcc-EEEEcccccCCCCceEeCCCCccCeEEeceEEEee
Confidence 4699999988 899999999999999999999999999999997 599999999999999999873 2459999999999
Q ss_pred eEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhh
Q psy8121 244 SGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKV 282 (285)
Q Consensus 244 ~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~ 282 (285)
.++++|+++|.+|++|+|+++++.++.+++|.|+..+.+
T Consensus 183 ~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l 221 (679)
T PRK01122 183 WIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTIL 221 (679)
T ss_pred eEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999877663
No 18
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=3e-32 Score=264.52 Aligned_cols=192 Identities=19% Similarity=0.232 Sum_probs=156.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8121 86 WEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEG---LAILISVIVVVIVTAFNDYTKERQFRGLQSRI 162 (285)
Q Consensus 86 ~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~ 162 (285)
..+|++|++++++++++++++++++.... ...+....|++. +++++.+++..+++.+++++.++++++|+++.
T Consensus 27 ~~~~~~p~~~il~~~a~is~~l~~~~~~~----~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~ 102 (675)
T TIGR01497 27 KAQWRNPVMFIVWVGSLLTTCITIAPASF----GMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTK 102 (675)
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHhhhcc----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45678999999999999999987642110 000111246664 33344445556667788888888888888865
Q ss_pred cCCCeEEEEE-CCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCC-CeEeeccEe
Q psy8121 163 EGEHKFSVIR-QGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFD-PMVLSGTHV 240 (285)
Q Consensus 163 ~~~~~~~V~r-dg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~-~~v~~Gt~v 240 (285)
+ +..++|+| ||+++.|++++|+|||+|.+++||+|||||++++|+ +.||||+|||||.|+.|.++.+ +.+|+||.|
T Consensus 103 ~-~~~a~vlr~dg~~~~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG~-~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v 180 (675)
T TIGR01497 103 K-TTFAKLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEGV-ASVDESAITGESAPVIKESGGDFASVTGGTRI 180 (675)
T ss_pred C-CceEEEEeeCCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcc-EEEEcccccCCCCceeecCCCCcceeecCcEE
Confidence 4 23577885 899999999999999999999999999999999997 5999999999999999998753 249999999
Q ss_pred eeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 241 MEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 241 ~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
.+|+++++|+++|.+|++|+|+++++.++.+++|.|+.++.++
T Consensus 181 ~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~~l~~l~ 223 (675)
T TIGR01497 181 LSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEIALTILL 223 (675)
T ss_pred EeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999998776543
No 19
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=5.5e-32 Score=260.46 Aligned_cols=166 Identities=24% Similarity=0.422 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCE
Q psy8121 96 ILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGE 175 (285)
Q Consensus 96 ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~ 175 (285)
++.++++++++++ .|++++++++++++..+++.+++++.++.+++|.++.+ ++++|+|||+
T Consensus 4 l~~~a~~~~~~~~-----------------~~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~--~~~~v~r~g~ 64 (536)
T TIGR01512 4 LMALAALGAVAIG-----------------EYLEGALLLLLFSIGETLEEYASGRARRALKALMELAP--DTARVLRGGS 64 (536)
T ss_pred HHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEEEEECCE
Confidence 4455666666554 68888887777777777777777777777888777654 7899999999
Q ss_pred EEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCCCeEeeccEeeeeeEEEEEEEecCc
Q psy8121 176 VKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVN 255 (285)
Q Consensus 176 ~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~v~~Gt~v~~G~~~~~V~~tG~~ 255 (285)
++.+++++|+|||+|.+++||+|||||++++|++ .||||+|||||.|+.|+++ +.+|+||.+.+|+++++|++||.+
T Consensus 65 ~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~-~vdes~lTGEs~pv~k~~g--~~v~aGt~v~~G~~~~~V~~~g~~ 141 (536)
T TIGR01512 65 LEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTS-TVDESALTGESVPVEKAPG--DEVFAGAINLDGVLTIVVTKLPAD 141 (536)
T ss_pred EEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcE-EEEecccCCCCCcEEeCCC--CEEEeeeEECCceEEEEEEEeccc
Confidence 9999999999999999999999999999999985 9999999999999999988 789999999999999999999999
Q ss_pred cHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 256 SQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 256 T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
|.+|+|.+++++++.+++|+|+.+++++
T Consensus 142 t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 169 (536)
T TIGR01512 142 STIAKIVNLVEEAQSRKAKTQRFIDRFA 169 (536)
T ss_pred cHHHHHHHHHHHHhhCCChHHHHHHHHH
Confidence 9999999999999999999999999865
No 20
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-32 Score=262.72 Aligned_cols=191 Identities=27% Similarity=0.410 Sum_probs=159.4
Q ss_pred CchHHHHHHHHhhhh---HHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8121 78 PKTFLTLVWEALQDV---TLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQ 154 (285)
Q Consensus 78 ~~~~~~~~~~~~~~~---~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~ 154 (285)
..||++.+|+.+++. +..+..++++.+++++.|..... .||+...+++.++ .+.++++++.+.|+
T Consensus 131 g~~f~~~a~~~l~~~~~~md~Lv~la~~~A~~~s~~~~~~~----------~yf~~aa~ii~l~--~~G~~LE~~a~~ra 198 (713)
T COG2217 131 GWPFYRGAWRALRRGRLNMDTLVALATIGAYAYSLYATLFP----------VYFEEAAMLIFLF--LLGRYLEARAKGRA 198 (713)
T ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 456777778888764 33345556666777776643211 4556555555433 47788899999998
Q ss_pred HHHHHhhhc-CCCeEEEEE-CCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCCC
Q psy8121 155 FRGLQSRIE-GEHKFSVIR-QGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDP 232 (285)
Q Consensus 155 ~~~l~~~~~-~~~~~~V~r-dg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~ 232 (285)
.+++++++. .++++++++ ||++++|+.++|.+||+|.++|||+||+||+|++|++ .||||+|||||.|+.|.+| +
T Consensus 199 ~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s-~vDeS~iTGEs~PV~k~~G--d 275 (713)
T COG2217 199 RRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSS-SVDESMLTGESLPVEKKPG--D 275 (713)
T ss_pred HHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcE-EeecchhhCCCCCEecCCC--C
Confidence 888888776 467787776 5558999999999999999999999999999999997 9999999999999999998 7
Q ss_pred eEeeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 233 MVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 233 ~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
.||+||.+.+|..+++|+++|.+|.+++|++++++++..|+|+||.++|++
T Consensus 276 ~V~aGtiN~~G~l~i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a 326 (713)
T COG2217 276 EVFAGTVNLDGSLTIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVA 326 (713)
T ss_pred EEeeeEEECCccEEEEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999986
No 21
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=1.5e-31 Score=258.45 Aligned_cols=199 Identities=25% Similarity=0.355 Sum_probs=154.5
Q ss_pred chHHHHHHHHhhhh---HHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8121 79 KTFLTLVWEALQDV---TLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQF 155 (285)
Q Consensus 79 ~~~~~~~~~~~~~~---~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~ 155 (285)
.||++.+|+.++.. +-.+..++++.+++++.|....+.... ......||+.+.++++++ .+.++++++.++|+.
T Consensus 3 ~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~--~~g~~le~~~~~~a~ 79 (562)
T TIGR01511 3 RPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLT-GLHVHTFFDASAMLITFI--LLGRWLEMLAKGRAS 79 (562)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhccccc-ccccchhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 57888888888652 334455666667776655432111000 001125777776655543 244566666555555
Q ss_pred HHHHhhhc-CCCeEEEEEC-CEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCCCe
Q psy8121 156 RGLQSRIE-GEHKFSVIRQ-GEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPM 233 (285)
Q Consensus 156 ~~l~~~~~-~~~~~~V~rd-g~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~ 233 (285)
+.++++.. .+.+++++|+ |++++|++++|+|||+|.+++||+|||||+|++|++ .||||+|||||.|+.|.++ +.
T Consensus 80 ~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~-~vdes~lTGEs~pv~k~~g--d~ 156 (562)
T TIGR01511 80 DALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGES-EVDESLVTGESLPVPKKVG--DP 156 (562)
T ss_pred HHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEecCceEEEECce-EEehHhhcCCCCcEEcCCC--CE
Confidence 55554433 3478888885 667999999999999999999999999999999986 9999999999999999998 78
Q ss_pred EeeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 234 VLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 234 v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
||+||.+.+|.++++|+++|.+|.+|+|++++++++.+++|+|+.+++++
T Consensus 157 V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a 206 (562)
T TIGR01511 157 VIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVA 206 (562)
T ss_pred EEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975
No 22
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.98 E-value=1.8e-31 Score=264.83 Aligned_cols=183 Identities=20% Similarity=0.267 Sum_probs=151.3
Q ss_pred chHHHHHHHHhhhh----HHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8121 79 KTFLTLVWEALQDV----TLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQ 154 (285)
Q Consensus 79 ~~~~~~~~~~~~~~----~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~ 154 (285)
.||++..|+.++.. +-.++.++++.+++++ .|.+++.+++++++...++.+.+.+.++.
T Consensus 171 ~~~~~~a~~~l~~~~~~~~~~L~~~a~~~a~~~~-----------------~~~~a~~i~~l~~~g~~le~~~~~ra~~~ 233 (741)
T PRK11033 171 YPIARKALRLIRSGSPFAIETLMSVAAIGALFIG-----------------ATAEAAMVLLLFLIGERLEGYAASRARRG 233 (741)
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777776542 2223334444444432 46777776666665556666666666666
Q ss_pred HHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCCCeE
Q psy8121 155 FRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMV 234 (285)
Q Consensus 155 ~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~v 234 (285)
+++|.++.+ .+++|+|||+++.|++++|+|||+|.+++||+|||||+|++|+. .||||+|||||.|+.|.+| +.|
T Consensus 234 ~~~L~~l~p--~~a~vir~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~-~vdes~lTGEs~Pv~k~~G--d~V 308 (741)
T PRK11033 234 VSALMALVP--ETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFA-SFDESALTGESIPVERATG--EKV 308 (741)
T ss_pred HHHHHhCCC--CEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEecceEEEECcE-EeecccccCCCCCEecCCC--Cee
Confidence 777776554 78999999999999999999999999999999999999999985 9999999999999999998 789
Q ss_pred eeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 235 LSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 235 ~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
|+||.+.+|.++++|+++|.+|.+|+|.+++++++.+++|+|+.+++++
T Consensus 309 ~aGt~~~~G~~~i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a 357 (741)
T PRK11033 309 PAGATSVDRLVTLEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFS 357 (741)
T ss_pred ccCCEEcCceEEEEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875
No 23
>KOG0208|consensus
Probab=99.98 E-value=3e-31 Score=256.28 Aligned_cols=218 Identities=22% Similarity=0.289 Sum_probs=169.4
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCC
Q psy8121 40 QEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFD 119 (285)
Q Consensus 40 ~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~ 119 (285)
...++..... ++||+ .+++..|+..||+|.+..+ .++.++++.++..+|+.+...+ |+++|+..
T Consensus 148 ~~~~~~~~~~-~~gL~--~~~~~~r~~iyG~N~i~l~-ik~i~~iLv~EvL~PfYlFQ~f----Sv~lW~~d-------- 211 (1140)
T KOG0208|consen 148 PRWYSTESYV-SNGLE--RQEIIDRRIIYGRNVISLP-IKSISQILVKEVLNPFYLFQAF----SVALWLAD-------- 211 (1140)
T ss_pred hhhhccceec-cCCcc--HHHHHhHHhhcCCceeeee-cccHHHHHHHhccchHHHHHhH----Hhhhhhcc--------
Confidence 3334444332 58999 8999999999999999997 5689999999988887655433 34444332
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecC-CCee
Q psy8121 120 DDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKY-GDLL 198 (285)
Q Consensus 120 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~-G~~i 198 (285)
.+++++++|+++.+.+.+.+.++ .+++..++++|......|+|+|||.|++|+++|||||||+++.+ |...
T Consensus 212 -----~Y~~YA~cI~iisv~Si~~sv~e---~r~qs~rlr~mv~~~~~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~ 283 (1140)
T KOG0208|consen 212 -----SYYYYAFCIVIISVYSIVLSVYE---TRKQSIRLRSMVKFTCPVTVIRDGFWETVDSSELVPGDILYIPPPGKIM 283 (1140)
T ss_pred -----cchhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCceEEEEECCEEEEEeccccccccEEEECCCCeEe
Confidence 14555666665555555544444 44455566666665578999999999999999999999999988 9999
Q ss_pred eccEEEEeeCceeEeccccCCCCCceeccCC-----------------CCCeEeeccEeee------eeEEEEEEEecCc
Q psy8121 199 PADGCLIQSNDLKVDESSLTGESDHVKKGEA-----------------FDPMVLSGTHVME------GSGKMLVTAVGVN 255 (285)
Q Consensus 199 PaDg~il~g~~l~vdeS~LTGEs~pv~k~~~-----------------~~~~v~~Gt~v~~------G~~~~~V~~tG~~ 255 (285)
|||+++++|++ .||||||||||.|+.|.+- .+|++|+||.+++ +.+.++|++||.+
T Consensus 284 PcDa~Li~g~c-ivNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTGF~ 362 (1140)
T KOG0208|consen 284 PCDALLISGDC-IVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLRTGFS 362 (1140)
T ss_pred ecceEEEeCcE-EeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEecccc
Confidence 99999999986 9999999999999999862 3589999999995 5789999999999
Q ss_pred cHHHHHHHHHhhcccccchHHHHHhhh
Q psy8121 256 SQAGIIFTLLGAAVDEQEQEIKKKRKV 282 (285)
Q Consensus 256 T~~g~i~~~~~~~~~~~~~~~~~~~~~ 282 (285)
|..|++.+.+-......-++-|-..++
T Consensus 363 T~KGqLVRsilyPkP~~fkfyrds~~f 389 (1140)
T KOG0208|consen 363 TTKGQLVRSILYPKPVNFKFYRDSFKF 389 (1140)
T ss_pred ccccHHHHhhcCCCCcccHHHHHHHHH
Confidence 999999999977666655555544443
No 24
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.97 E-value=1.1e-30 Score=252.69 Aligned_cols=153 Identities=25% Similarity=0.345 Sum_probs=137.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECC-EEEEEEcCCcccCcEEEecCCCeeeccEEE
Q psy8121 126 GWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQG-EVKQISVGDIVVGDICQIKYGDLLPADGCL 204 (285)
Q Consensus 126 ~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg-~~~~i~~~~lv~GDiv~l~~G~~iPaDg~i 204 (285)
.|.++..+++++++..+++.+++++.++..++|.+..+ .+++|+||| +++.|++++|+|||+|.+++||.|||||+|
T Consensus 17 ~~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~--~~~~v~r~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~v 94 (556)
T TIGR01525 17 LVLEGALLLFLFLLGETLEERAKGRASDALSALLALAP--STARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVV 94 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEeccceEE
Confidence 56677777777776777777777777777777766543 789999996 999999999999999999999999999999
Q ss_pred EeeCceeEeccccCCCCCceeccCCCCCeEeeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 205 IQSNDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 205 l~g~~l~vdeS~LTGEs~pv~k~~~~~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
++|++ .||||+|||||.|+.|.++ +.+|+||.+.+|.++++|+++|.+|++|+|.++++++..+++|+|+.+++++
T Consensus 95 i~g~~-~vdes~lTGEs~pv~k~~g--~~v~aGt~v~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a 170 (556)
T TIGR01525 95 ISGES-EVDESALTGESMPVEKKEG--DEVFAGTINGDGSLTIRVTKLGEDSTLAQIVKLVEEAQSSKAPIQRLADRIA 170 (556)
T ss_pred Eecce-EEeehhccCCCCCEecCCc--CEEeeceEECCceEEEEEEEecccCHHHHHHHHHHHHhhcCCcHHHHHHHHH
Confidence 99985 9999999999999999988 7899999999999999999999999999999999999999999999998874
No 25
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.97 E-value=2.5e-30 Score=260.49 Aligned_cols=199 Identities=23% Similarity=0.308 Sum_probs=156.2
Q ss_pred chHHHHHHHHhhhh---HHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8121 79 KTFLTLVWEALQDV---TLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQF 155 (285)
Q Consensus 79 ~~~~~~~~~~~~~~---~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~ 155 (285)
.+|++.+|+.++.. +..+..++++.+++++.+.......+.. ...+.||+.+.++++++ .+.++++++.+.|+.
T Consensus 235 ~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~--~~g~~le~~~~~~~~ 311 (834)
T PRK10671 235 GHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPM-EARHLYYEASAMIIGLI--NLGHMLEARARQRSS 311 (834)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45666667776642 2334455666666665432210000000 01124778766665543 467778888887777
Q ss_pred HHHHhhhc-CCCeEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCCCeE
Q psy8121 156 RGLQSRIE-GEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMV 234 (285)
Q Consensus 156 ~~l~~~~~-~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~v 234 (285)
+.++++.. .+++++++|||++++|++++|+|||+|.+++||+|||||+|++|+ ..||||+|||||.|+.|.+| +.|
T Consensus 312 ~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~-~~vdeS~lTGEs~pv~k~~g--d~V 388 (834)
T PRK10671 312 KALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGE-AWLDEAMLTGEPIPQQKGEG--DSV 388 (834)
T ss_pred HHHHHHhccCCCEEEEEeCCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEce-EEEeehhhcCCCCCEecCCC--CEE
Confidence 76666554 357899999999999999999999999999999999999999997 59999999999999999998 789
Q ss_pred eeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 235 LSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 235 ~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
|+||.+.+|.++++|+++|.+|.+|+|++++++++..++|+|+.+++++
T Consensus 389 ~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a 437 (834)
T PRK10671 389 HAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKIS 437 (834)
T ss_pred EecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875
No 26
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.97 E-value=1.6e-30 Score=224.75 Aligned_cols=146 Identities=33% Similarity=0.563 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCe-EEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEe-eCce
Q psy8121 133 ILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHK-FSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQ-SNDL 210 (285)
Q Consensus 133 il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~-~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~-g~~l 210 (285)
+++++++..++..+++++.++..++++++.+ ++ ++|+|||+++.+++++|+|||+|.+++||.+||||++++ |. +
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~g~-~ 78 (230)
T PF00122_consen 2 ILFLILLSNIIEIWQEYRSKKQLKKLNNLNP--QKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLESGS-A 78 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSS--SEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEESSE-E
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHHHhccCC--CccEEEEeccccccchHhhccceeeeecccccccccCccceeccc-c
Confidence 3445556678888999999999999887654 44 899999999999999999999999999999999999999 75 6
Q ss_pred eEeccccCCCCCceecc-----CCCCCeEeeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 211 KVDESSLTGESDHVKKG-----EAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 211 ~vdeS~LTGEs~pv~k~-----~~~~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
.||||.+|||+.|+.|. .+ +++|+||.+.+|.+.++|++||.+|..|++.+.+...+.+++++++.+++++
T Consensus 79 ~vd~s~ltGes~pv~k~~~~~~~~--~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00122_consen 79 YVDESALTGESEPVKKTPLPLNPG--NIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIA 154 (230)
T ss_dssp EEECHHHHSBSSEEEESSSCCCTT--TEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHH
T ss_pred cccccccccccccccccccccccc--chhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHH
Confidence 99999999999999999 55 9999999999999999999999999999999999999888899999998765
No 27
>KOG0207|consensus
Probab=99.96 E-value=6e-30 Score=246.81 Aligned_cols=198 Identities=23% Similarity=0.364 Sum_probs=164.7
Q ss_pred CchHHHHHHHHhhhhHH---HHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8121 78 PKTFLTLVWEALQDVTL---IILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQ 154 (285)
Q Consensus 78 ~~~~~~~~~~~~~~~~~---~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~ 154 (285)
..+|+..+|+.+++... .+..+++..+++++.+.....-.+ . ....||+...|++.++ .+.++++...+.|+
T Consensus 291 G~~fy~~A~ksL~~g~~nMdvLv~L~t~aay~~S~~~~~~~~~~--~-~~~tfFdt~~MLi~fi--~lgr~LE~~Ak~kt 365 (951)
T KOG0207|consen 291 GRPFYLAAYKSLKRGSANMDVLVVLGTTAAYFYSIFSLLAAVVF--D-SPPTFFDTSPMLITFI--TLGRWLESLAKGKT 365 (951)
T ss_pred ceeeHHHHHHHHhcCCCCceeehhhHHHHHHHHHHHHHHHHHHc--c-CcchhccccHHHHHHH--HHHHHHHHHhhccc
Confidence 67889999999988533 234445555555553321111111 0 1236888888887765 47888888999998
Q ss_pred HHHHHhhhc-CCCeEEEEECCE-EEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCCC
Q psy8121 155 FRGLQSRIE-GEHKFSVIRQGE-VKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDP 232 (285)
Q Consensus 155 ~~~l~~~~~-~~~~~~V~rdg~-~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~ 232 (285)
...+.++++ .+.++.++.+|+ +++|+.+.+.+||+|.+.||++||+||++++|++ .||||++|||++||.|+++ .
T Consensus 366 s~alskLmsl~p~~a~ii~~g~~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss-~VDEs~iTGEs~PV~Kk~g--s 442 (951)
T KOG0207|consen 366 SEALSKLMSLAPSKATIIEDGSEEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSS-EVDESLITGESMPVPKKKG--S 442 (951)
T ss_pred hHHHHHHhhcCcccceEeecCCcceEeeeeeeccCCEEEECCCCccccccEEEeCce-eechhhccCCceecccCCC--C
Confidence 888888776 457788999996 8899999999999999999999999999999997 9999999999999999998 7
Q ss_pred eEeeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 233 MVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 233 ~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
.|.+||.+.+|...+.++++|.+|.++||+++++++|..|+|+||.+|+++
T Consensus 443 ~ViaGsiN~nG~l~VkaT~~g~dttla~IvkLVEEAQ~sKapiQq~aDkia 493 (951)
T KOG0207|consen 443 TVIAGSINLNGTLLVKATKVGGDTTLAQIVKLVEEAQLSKAPIQQLADKIA 493 (951)
T ss_pred eeeeeeecCCceEEEEEEeccccchHHHHHHHHHHHHcccchHHHHHHHhh
Confidence 899999999999999999999999999999999999999999999999986
No 28
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.94 E-value=1.2e-26 Score=238.74 Aligned_cols=197 Identities=19% Similarity=0.220 Sum_probs=158.3
Q ss_pred cCCCCCCCCCCchH---HHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHH
Q psy8121 68 FGSNTIPPKPPKTF---LTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVT 144 (285)
Q Consensus 68 ~G~N~i~~~~~~~~---~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~ 144 (285)
|..|.+...+...| ++.+|++|+.+..+.+++.++++++..+... ..+.....++++++++.+..
T Consensus 1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s~~------------~~~t~~~pL~~v~~~~~~~~ 68 (1057)
T TIGR01652 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILSPT------------YRGTSIVPLAFVLIVTAIKE 68 (1057)
T ss_pred CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcCCC------------CccHhHHhHHHHHHHHHHHH
Confidence 56799988776555 7889999999999999999888876543211 12222333444444667888
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCeEEEEEC-CEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCc----eeEeccccCC
Q psy8121 145 AFNDYTKERQFRGLQSRIEGEHKFSVIRQ-GEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSND----LKVDESSLTG 219 (285)
Q Consensus 145 ~~~~~~~~k~~~~l~~~~~~~~~~~V~rd-g~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~----l~vdeS~LTG 219 (285)
++++++++++.+++++ .+++|+|+ |+++.+++++|+|||+|.|++||.|||||++++++. +.||||+|||
T Consensus 69 ~~ed~~r~~~d~~~n~-----~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~G 143 (1057)
T TIGR01652 69 AIEDIRRRRRDKEVNN-----RLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDG 143 (1057)
T ss_pred HHHHHHHHHhHHHHhC-----cEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceEEEEeeccCC
Confidence 9999999988876543 68999997 899999999999999999999999999999998543 6999999999
Q ss_pred CCCceeccCC----------------------------------------------CCCeEeeccEeee-eeEEEEEEEe
Q psy8121 220 ESDHVKKGEA----------------------------------------------FDPMVLSGTHVME-GSGKMLVTAV 252 (285)
Q Consensus 220 Es~pv~k~~~----------------------------------------------~~~~v~~Gt~v~~-G~~~~~V~~t 252 (285)
||.|+.|.+. .+|++++||.+.+ |.+.++|++|
T Consensus 144 Es~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~~gvVvyT 223 (1057)
T TIGR01652 144 ETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGVVVYT 223 (1057)
T ss_pred eecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeEEEEEEEE
Confidence 9999988631 1368899999999 9999999999
Q ss_pred cCccHHHHHHHHHhhcccccchHHHHHhhhcC
Q psy8121 253 GVNSQAGIIFTLLGAAVDEQEQEIKKKRKVGL 284 (285)
Q Consensus 253 G~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
|.+|.+++ .......+++++|+++++++.
T Consensus 224 G~~Tk~~~---n~~~~~~k~s~le~~ln~~~~ 252 (1057)
T TIGR01652 224 GHDTKLMR---NATQAPSKRSRLEKELNFLII 252 (1057)
T ss_pred chhhhhhh---cCCCCcccccHHHHHHhhHHH
Confidence 99997655 455667788999999998753
No 29
>KOG0209|consensus
Probab=99.94 E-value=3.3e-26 Score=217.89 Aligned_cols=200 Identities=19% Similarity=0.246 Sum_probs=161.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHH
Q psy8121 52 EGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGL 131 (285)
Q Consensus 52 ~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (285)
+|+.. ..++.....+||+|....+ .+.|..+|.+.-..|++.+..++. .+|... ++||.++
T Consensus 161 ~G~~~-~~~i~~a~~~~G~N~fdi~-vPtF~eLFkE~A~aPfFVFQVFcv----gLWCLD-------------eyWYySl 221 (1160)
T KOG0209|consen 161 TGHEE-ESEIKLAKHKYGKNKFDIV-VPTFSELFKEHAVAPFFVFQVFCV----GLWCLD-------------EYWYYSL 221 (1160)
T ss_pred cCcch-HHHHHHHHHHhcCCccccC-CccHHHHHHHhccCceeeHhHHhH----HHHHhH-------------HHHHHHH
Confidence 68872 4566666667999999998 558999999988888655543332 334332 2788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecC---CCeeeccEEEEeeC
Q psy8121 132 AILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKY---GDLLPADGCLIQSN 208 (285)
Q Consensus 132 ~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~---G~~iPaDg~il~g~ 208 (285)
.-++|++ .+++-.-+++.+++..+++|-..+..+.|+|+++|+.+.++||.|||+|.+.. ...||||.+++.|+
T Consensus 222 FtLfMli---~fE~tlV~Qrm~~lse~R~Mg~kpy~I~v~R~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~Gs 298 (1160)
T KOG0209|consen 222 FTLFMLI---AFEATLVKQRMRTLSEFRTMGNKPYTINVYRNKKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGS 298 (1160)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCcceeccccccCCCceEEeccCcccCcCCceEEEEecc
Confidence 7777665 45556667888888999988777788999999999999999999999999976 56799999999999
Q ss_pred ceeEeccccCCCCCceeccC---------------CCCCeEeeccEee-------------eeeEEEEEEEecCccHHHH
Q psy8121 209 DLKVDESSLTGESDHVKKGE---------------AFDPMVLSGTHVM-------------EGSGKMLVTAVGVNSQAGI 260 (285)
Q Consensus 209 ~l~vdeS~LTGEs~pv~k~~---------------~~~~~v~~Gt~v~-------------~G~~~~~V~~tG~~T~~g~ 260 (285)
+ .||||||||||.|..|.+ ++.+.+|+||.++ +|.+.+.|++||.+|..|+
T Consensus 299 c-iVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQGk 377 (1160)
T KOG0209|consen 299 C-IVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQGK 377 (1160)
T ss_pred e-eechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEEEeccccccCCc
Confidence 7 999999999999999976 2457999999998 4568999999999999999
Q ss_pred HHHHHhhcccccch
Q psy8121 261 IFTLLGAAVDEQEQ 274 (285)
Q Consensus 261 i~~~~~~~~~~~~~ 274 (285)
+.+.+-.+.++-|-
T Consensus 378 LvRtilf~aervTa 391 (1160)
T KOG0209|consen 378 LVRTILFSAERVTA 391 (1160)
T ss_pred eeeeEEecceeeee
Confidence 99988776555443
No 30
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.94 E-value=4.6e-26 Score=218.06 Aligned_cols=142 Identities=31% Similarity=0.465 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEecccc
Q psy8121 138 IVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSL 217 (285)
Q Consensus 138 ~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~L 217 (285)
++..++..+++++.++..+++.++...+.+++|+|+| ++.|++++|+|||+|.+++||.|||||++++|. +.||||+|
T Consensus 7 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~-~~vdes~L 84 (499)
T TIGR01494 7 LLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGS-CFVDESNL 84 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEcc-EEEEcccc
Confidence 3455777788888888999988843345889999999 999999999999999999999999999999997 49999999
Q ss_pred CCCCCceeccCCCCCeEeeccEeeeeeEEEEEEEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 218 TGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 218 TGEs~pv~k~~~~~~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
||||.|+.|.++ +.+|+||.+.+|++++.|+++|.+|..++|..+++.+...++|++++.++++
T Consensus 85 TGEs~pv~k~~g--~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~ 148 (499)
T TIGR01494 85 TGESVPVLKTAG--DAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLS 148 (499)
T ss_pred cCCCCCeeeccC--CccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 999999999987 6799999999999999999999999999999999999888999999988875
No 31
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.89 E-value=2.3e-22 Score=206.79 Aligned_cols=197 Identities=17% Similarity=0.181 Sum_probs=153.5
Q ss_pred hcCCCCCCCCCCc---hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHH
Q psy8121 67 TFGSNTIPPKPPK---TFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIV 143 (285)
Q Consensus 67 ~~G~N~i~~~~~~---~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~ 143 (285)
+|..|.+...|-. -+.+.++++|+.+..+.+++.+++.++-.+... ..+...+.+++++++..+.
T Consensus 86 ~f~~N~i~TsKYt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s~~------------~~~t~~~PL~~vl~v~~ik 153 (1178)
T PLN03190 86 EFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVF------------GRGASILPLAFVLLVTAVK 153 (1178)
T ss_pred cCCCCeeeccccccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcccC------------CcchHHHHHHHHHHHHHHH
Confidence 5888999887643 235568899998888888887777765432211 1233445555555566788
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEe-----eCceeEeccccC
Q psy8121 144 TAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQ-----SNDLKVDESSLT 218 (285)
Q Consensus 144 ~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~-----g~~l~vdeS~LT 218 (285)
..+++++++|+.+++++ ..++|+|+|+++.+++.+|+|||+|.+++||.|||||++++ |. +.||+|+||
T Consensus 154 e~~Ed~~r~k~d~~~N~-----~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~-~~Vdts~Ld 227 (1178)
T PLN03190 154 DAYEDWRRHRSDRIENN-----RLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGV-AYVQTINLD 227 (1178)
T ss_pred HHHHHHHHHHhHHhhcC-----cEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCce-EEEEccccC
Confidence 89999999998877643 67899999999999999999999999999999999999998 44 599999999
Q ss_pred CCCCceeccCC-------------------------------------------CCCeEeeccEeeee-eEEEEEEEecC
Q psy8121 219 GESDHVKKGEA-------------------------------------------FDPMVLSGTHVMEG-SGKMLVTAVGV 254 (285)
Q Consensus 219 GEs~pv~k~~~-------------------------------------------~~~~v~~Gt~v~~G-~~~~~V~~tG~ 254 (285)
|||.|+.|.++ .+|+++.||.+.+. .+.++|++||.
T Consensus 228 GEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~ 307 (1178)
T PLN03190 228 GESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCGR 307 (1178)
T ss_pred CeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEech
Confidence 99999998642 13567777777765 79999999999
Q ss_pred ccHHHHHHHHHhhcccccchHHHHHhhhcC
Q psy8121 255 NSQAGIIFTLLGAAVDEQEQEIKKKRKVGL 284 (285)
Q Consensus 255 ~T~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
+|. ++..-..+..+.+++|+.++++.+
T Consensus 308 dTK---~~~N~~~~~~K~S~le~~~N~~vi 334 (1178)
T PLN03190 308 ETK---AMLNNSGAPSKRSRLETRMNLEII 334 (1178)
T ss_pred hhh---HhhcCCCCCCCccHHHHHHhHHHH
Confidence 995 444444555788999999998753
No 32
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.4e-21 Score=178.83 Aligned_cols=185 Identities=19% Similarity=0.272 Sum_probs=134.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy8121 89 LQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIE--GLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEH 166 (285)
Q Consensus 89 ~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~ 166 (285)
.++|-+++.++.++++.++.++....+. ......|.- .+++++.+++..+-+++.|-+.+.+.++|++.- ...
T Consensus 30 ~kNPVMFvv~vg~~lt~~l~~~~~lfg~----~~~~~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~-~~~ 104 (681)
T COG2216 30 VKNPVMFVVEVGSILTTFLTIFPDLFGG----TGGSRLFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTK-TET 104 (681)
T ss_pred hhCCeEEeehHHHHHHHHHHHhhhhcCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH-HHH
Confidence 3556666667777776644443322111 010111211 122222233333444455555555666666532 234
Q ss_pred eEEEEEC-CEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCC-CCeEeeccEeeeee
Q psy8121 167 KFSVIRQ-GEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAF-DPMVLSGTHVMEGS 244 (285)
Q Consensus 167 ~~~V~rd-g~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~-~~~v~~Gt~v~~G~ 244 (285)
.++++++ |.++.+++.+|..||+|.+.+||.||+||.+++|.+ +||||.+||||.||.|.+|. ..-|-.||.+++..
T Consensus 105 ~A~~l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~a-sVdESAITGESaPViresGgD~ssVtGgT~v~SD~ 183 (681)
T COG2216 105 IARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVA-SVDESAITGESAPVIRESGGDFSSVTGGTRVLSDW 183 (681)
T ss_pred HHHHhcCCCCeeeccccccccCCEEEEecCCCccCCCeEEeeee-ecchhhccCCCcceeeccCCCcccccCCcEEeeee
Confidence 4566665 899999999999999999999999999999999997 99999999999999999863 24599999999999
Q ss_pred EEEEEEEecCccHHHHHHHHHhhcccccchHHHHH
Q psy8121 245 GKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKK 279 (285)
Q Consensus 245 ~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~ 279 (285)
.++++++...+|++.+++.+++-++.+|||=|--+
T Consensus 184 l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL 218 (681)
T COG2216 184 LKIRITANPGETFLDRMIALVEGAERQKTPNEIAL 218 (681)
T ss_pred EEEEEEcCCCccHHHHHHHHhhchhccCChhHHHH
Confidence 99999999999999999999999999999977633
No 33
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=99.56 E-value=1.3e-14 Score=101.64 Aligned_cols=67 Identities=33% Similarity=0.573 Sum_probs=63.5
Q ss_pred hcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH
Q psy8121 36 LGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVS 104 (285)
Q Consensus 36 ~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s 104 (285)
..+++++++.|+++...||+ ++|+.+|+++||+|.++.++++++|+.++++|++|+.++|++++++|
T Consensus 3 ~~~~~~v~~~l~t~~~~GLs--~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 3 QLSVEEVLKRLNTSSSQGLS--SEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp TSSHHHHHHHHTTBTSSBBT--HHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCCCCCCC--HHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 46899999999999999999 99999999999999999999999999999999999999999998875
No 34
>KOG0210|consensus
Probab=99.52 E-value=1.8e-13 Score=129.61 Aligned_cols=177 Identities=22% Similarity=0.328 Sum_probs=117.4
Q ss_pred HHHHhcCCCCCCCCCCc---hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHH
Q psy8121 63 HRRDTFGSNTIPPKPPK---TFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIV 139 (285)
Q Consensus 63 ~r~~~~G~N~i~~~~~~---~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~ 139 (285)
.++++|.+|.+...+.+ .+...++++|+.+..+.+++.+...++-. +.. +....+|. .+. +++.+
T Consensus 74 ~~~~r~~pn~v~nqKyn~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~-~~i--------g~l~ty~~-pl~--fvl~i 141 (1051)
T KOG0210|consen 74 YRRRRFPPNEVRNQKYNIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPA-LKI--------GYLSTYWG-PLG--FVLTI 141 (1051)
T ss_pred cccccCCCchhhhcccceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCch-hee--------cchhhhhH-HHH--HHHHH
Confidence 46678899999887643 22445666776655554444443333222 110 00111222 222 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEE-ECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeC----ceeEec
Q psy8121 140 VVIVTAFNDYTKERQFRGLQSRIEGEHKFSVI-RQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSN----DLKVDE 214 (285)
Q Consensus 140 ~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~-rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~----~l~vde 214 (285)
..+-.+..++.+.+.-+..++ ...+++ |+|-... ++.+|.+||+|.++.+++||||.++++.+ ++.+-.
T Consensus 142 tl~keavdd~~r~~rd~~~Ns-----e~y~~ltr~~~~~~-~Ss~i~vGDvi~v~K~~RVPADmilLrTsd~sg~~FiRT 215 (1051)
T KOG0210|consen 142 TLIKEAVDDLKRRRRDRELNS-----EKYTKLTRDGTRRE-PSSDIKVGDVIIVHKDERVPADMILLRTSDKSGSCFIRT 215 (1051)
T ss_pred HHHHHHHHHHHHHHhhhhhhh-----hhheeeccCCcccc-cccccccccEEEEecCCcCCcceEEEEccCCCCceEEec
Confidence 345566677766666555544 334454 7775444 99999999999999999999999999632 258888
Q ss_pred cccCCCCCceeccC---------------------------------------------CCCCeEeeccEeeeeeEEEEE
Q psy8121 215 SSLTGESDHVKKGE---------------------------------------------AFDPMVLSGTHVMEGSGKMLV 249 (285)
Q Consensus 215 S~LTGEs~pv~k~~---------------------------------------------~~~~~v~~Gt~v~~G~~~~~V 249 (285)
-.|.||+....|-+ +.+|+++++|.+.+|.+.++|
T Consensus 216 DQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~LsventLWanTVvAs~t~~gvV 295 (1051)
T KOG0210|consen 216 DQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSVENTLWANTVVASGTAIGVV 295 (1051)
T ss_pred cccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccccceeeeeeeEecCcEEEEE
Confidence 89999998766643 125799999999999999999
Q ss_pred EEecCccH
Q psy8121 250 TAVGVNSQ 257 (285)
Q Consensus 250 ~~tG~~T~ 257 (285)
+.||.+|.
T Consensus 296 vYTG~dtR 303 (1051)
T KOG0210|consen 296 VYTGRDTR 303 (1051)
T ss_pred EEecccHH
Confidence 99999984
No 35
>KOG0206|consensus
Probab=99.44 E-value=4.6e-13 Score=135.63 Aligned_cols=199 Identities=20% Similarity=0.289 Sum_probs=155.7
Q ss_pred HHHhcCCCCCCCCCCc---hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCccccccchHHHHHHHHHHHHH
Q psy8121 64 RRDTFGSNTIPPKPPK---TFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVV 140 (285)
Q Consensus 64 r~~~~G~N~i~~~~~~---~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 140 (285)
+...|-.|.+...|-. -+-+.++++|+....+.+++.++++++- +. +. ..|...+.+++++.++
T Consensus 28 ~~~~~~~N~i~TtKYt~~tFlPk~l~eQf~r~aN~yFl~~~il~~ip-~~-~~-----------~~~~~~~pl~~vl~~t 94 (1151)
T KOG0206|consen 28 PQRKYCDNRISTTKYTLFTFLPKNLFEQFHRVANLYFLFIAILQFIP-LS-PF-----------NPYTTLVPLLFVLGIT 94 (1151)
T ss_pred hhccccCCeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCc-cc-cc-----------CccceeeceeeeehHH
Confidence 5558999999987743 2356689999988888788888887665 22 21 1345555666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCE-EEEEEcCCcccCcEEEecCCCeeeccEEEEeeCc----eeEecc
Q psy8121 141 VIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGE-VKQISVGDIVVGDICQIKYGDLLPADGCLIQSND----LKVDES 215 (285)
Q Consensus 141 ~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~-~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~----l~vdeS 215 (285)
.+-.++++|++.++-.++++ .++.|+|++. ++....+++.+||+|.+..++.+|||.++++++. ++|..+
T Consensus 95 ~iKd~~eD~rR~~~D~~iN~-----~~~~v~~~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~ 169 (1151)
T KOG0206|consen 95 AIKDAIEDYRRHKQDKEVNN-----RKVEVLRGDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETA 169 (1151)
T ss_pred HHHHHHhhhhhhhccHHhhc-----ceeEEecCCceeeeeccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEe
Confidence 78889999999998887765 6788998644 8999999999999999999999999999997542 699999
Q ss_pred ccCCCCCceeccC---------------------------------------------CCCCeEeeccEeeee-eEEEEE
Q psy8121 216 SLTGESDHVKKGE---------------------------------------------AFDPMVLSGTHVMEG-SGKMLV 249 (285)
Q Consensus 216 ~LTGEs~pv~k~~---------------------------------------------~~~~~v~~Gt~v~~G-~~~~~V 249 (285)
.|.||+....|.. ..+++++.|+.+.+. .+.+.|
T Consensus 170 nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~v 249 (1151)
T KOG0206|consen 170 NLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVV 249 (1151)
T ss_pred ecCCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEE
Confidence 9999998776642 013578888888876 678999
Q ss_pred EEecCccHHHHHHHHHhhcccccchHHHHHhhhc
Q psy8121 250 TAVGVNSQAGIIFTLLGAAVDEQEQEIKKKRKVG 283 (285)
Q Consensus 250 ~~tG~~T~~g~i~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
+-||.+| |++..-..+..++++++|.++...
T Consensus 250 v~tG~dt---K~~~n~~~~~~Krs~ier~~n~~i 280 (1151)
T KOG0206|consen 250 VFTGHDT---KLMQNSGKPPSKRSRIERKMNKII 280 (1151)
T ss_pred EEcCCcc---hHHHhcCCCccccchhhhhhhhhH
Confidence 9999999 555566678999999999888654
No 36
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=99.41 E-value=7.6e-13 Score=91.26 Aligned_cols=62 Identities=29% Similarity=0.431 Sum_probs=56.7
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy8121 45 KLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLS 108 (285)
Q Consensus 45 ~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~ 108 (285)
.|++++..||+ ++++++|+++||+|+++.++++++|+.++++|.+|+.++|++++++|++++
T Consensus 2 ~l~~~~~~GLs--~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 2 RLQTSLESGLS--SEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALLG 63 (64)
T ss_pred CCCCCcccCCC--HHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 46788878999 899999999999999999988999999999999999999999999988653
No 37
>KOG4383|consensus
Probab=95.04 E-value=0.053 Score=53.01 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=57.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhcC----------CC-------eE----EEEECCE
Q psy8121 125 HGWIEGLAILISVIVVVIVTAFNDYTKERQ--------FRGLQSRIEG----------EH-------KF----SVIRQGE 175 (285)
Q Consensus 125 ~~~~~~~~il~~~~~~~~~~~~~~~~~~k~--------~~~l~~~~~~----------~~-------~~----~V~rdg~ 175 (285)
..+..+.+..+.++++.++..+|+..+++. ++++.++... ++ .+ +.+|||+
T Consensus 86 igl~nAsal~LLLLlnilL~grQdRikrr~~eqklRg~~DaI~da~kdgreiq~~nam~~dL~~pfa~s~s~h~afRDGh 165 (1354)
T KOG4383|consen 86 IGLSNASALALLLLLNILLEGRQDRIKRRAFEQKLRGAFDAILDAEKDGREIQKFNAMPKDLEAPFADSASCHSAFRDGH 165 (1354)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCccccCccCcHHHHHHHhccCe
Confidence 355566666666667777777777655554 3333333221 00 01 2579999
Q ss_pred EEEEEcCCcccCcEEEecCCCeeeccEEEEee
Q psy8121 176 VKQISVGDIVVGDICQIKYGDLLPADGCLIQS 207 (285)
Q Consensus 176 ~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g 207 (285)
..++|..-||.||||-++||+.-||.++=+++
T Consensus 166 lm~lP~~LLVeGDiIa~RPGQeafan~~g~~d 197 (1354)
T KOG4383|consen 166 LMELPRILLVEGDIIAFRPGQEAFANCEGFDD 197 (1354)
T ss_pred eeecceeEEEeccEEEecCCccccccccccCC
Confidence 99999999999999999999999998876655
No 38
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=82.74 E-value=2 Score=42.53 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=46.6
Q ss_pred EcCCcccCcEEEe-cCCCeee-ccEEEEeeCceeEeccccCCCCCceeccCCCCCeEeeccEeeeeeEEEEEEEecCccH
Q psy8121 180 SVGDIVVGDICQI-KYGDLLP-ADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQ 257 (285)
Q Consensus 180 ~~~~lv~GDiv~l-~~G~~iP-aDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~v~~Gt~v~~G~~~~~V~~tG~~T~ 257 (285)
.-.+|.+||.|.| ++||+|| .++++.+-. +|+..|.. .|.. | =.+||.+......+..-.++..+.
T Consensus 364 ~rkdIrIGDtV~V~kAGdVIP~V~~Vv~e~R---------~~~~~~~~-~P~~-C-P~C~s~l~r~~~e~~~rC~n~~~C 431 (667)
T COG0272 364 KRKDIRIGDTVVVRKAGDVIPQVVGVVLEKR---------PGNEKPIP-FPTH-C-PVCGSELVREEGEVVIRCTNGLNC 431 (667)
T ss_pred HhcCCCCCCEEEEEecCCCCcceeeeecccC---------CCCCCCCC-CCCC-C-CCCCCeeEeccCceeEecCCCCCC
Confidence 3479999999999 7899999 666666543 35555543 2221 2 257888877555555555554555
Q ss_pred HHHHHHHH
Q psy8121 258 AGIIFTLL 265 (285)
Q Consensus 258 ~g~i~~~~ 265 (285)
-+|..+.+
T Consensus 432 ~aq~~e~l 439 (667)
T COG0272 432 PAQLKERL 439 (667)
T ss_pred hHHHhhhe
Confidence 55555444
No 39
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=79.09 E-value=34 Score=28.06 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=7.2
Q ss_pred HhhcCHHHHHHHhCC
Q psy8121 34 NELGGIQEICKKLYT 48 (285)
Q Consensus 34 ~~~~~~~~l~~~l~t 48 (285)
+++|+++++++++..
T Consensus 48 ~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 48 AELGSPKEIAREILA 62 (181)
T ss_pred HHcCCHHHHHHHHHH
Confidence 334555555554443
No 40
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=73.01 E-value=2.1 Score=30.72 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=16.2
Q ss_pred EcCCcccCcEEEe-cCCCeeec
Q psy8121 180 SVGDIVVGDICQI-KYGDLLPA 200 (285)
Q Consensus 180 ~~~~lv~GDiv~l-~~G~~iPa 200 (285)
.-.+|.+||.|.+ ++||.||-
T Consensus 46 ~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 46 KELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHTT-BBT-EEEEEEETTTEEE
T ss_pred HHcCCCCCCEEEEEECCCccce
Confidence 3568999999998 78999994
No 41
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=68.99 E-value=39 Score=27.08 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCeE-E-EEECCEEEEEEcCCcccCcEEEecC
Q psy8121 126 GWIEGLAILISVIVVVIVTAFNDYTKERQFRG-LQSRIEGEHKF-S-VIRQGEVKQISVGDIVVGDICQIKY 194 (285)
Q Consensus 126 ~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~-l~~~~~~~~~~-~-V~rdg~~~~i~~~~lv~GDiv~l~~ 194 (285)
.|-|..+|++++++..+.--+.+|.+.++..+ -..+.+--..+ . ---+-+...+++..+.-|-||.+..
T Consensus 45 KyRDL~II~~L~ll~l~giq~~~y~~~~~~~~q~~~~~~fi~~vA~~~~V~~~~v~VNst~l~dG~iVki~~ 116 (149)
T PF11694_consen 45 KYRDLSIIALLLLLLLIGIQYSDYQQNQNQHSQSSQMVHFIESVAKDLGVSKEEVYVNSTALTDGMIVKIGD 116 (149)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHhCCChheEEEecccccCCeEEEECC
Confidence 67887777777766666566777766654322 11111100000 0 0013345778888888888887763
No 42
>PRK04980 hypothetical protein; Provisional
Probab=68.47 E-value=15 Score=27.53 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=36.9
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEec--CCCeeeccEEEEeeCceeEec-----cccCCCCCceec
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIK--YGDLLPADGCLIQSNDLKVDE-----SSLTGESDHVKK 226 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~--~G~~iPaDg~il~g~~l~vde-----S~LTGEs~pv~k 226 (285)
.+..-+||+. -...+|||++.+. .+.+.-|+..+++-....+|| +-.-|+|.+-.|
T Consensus 19 kKTiTiRd~s-----e~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~f~eLte~hA~qEg~sL~elk 81 (102)
T PRK04980 19 RKTITIRDES-----ESHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVTFDELNEKHAEQENMTLPELK 81 (102)
T ss_pred CceEEeeCCc-----ccCCCCCCEEEEEECCCCcEEEEEEEEEEEEEehhhCCHHHHHHhCCCHHHHH
Confidence 3444567753 2368899999997 788888999998765444432 334466555444
No 43
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=67.29 E-value=18 Score=24.82 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=24.0
Q ss_pred CeEEEEECCEEEEEEc---CCcccCcEEEecCCCe
Q psy8121 166 HKFSVIRQGEVKQISV---GDIVVGDICQIKYGDL 197 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~---~~lv~GDiv~l~~G~~ 197 (285)
..+.|-.+|..++++. .++.|||.|.+..|--
T Consensus 17 ~~A~v~~~G~~~~V~~~lv~~v~~Gd~VLVHaG~A 51 (68)
T PF01455_consen 17 GMAVVDFGGVRREVSLALVPDVKVGDYVLVHAGFA 51 (68)
T ss_dssp TEEEEEETTEEEEEEGTTCTSB-TT-EEEEETTEE
T ss_pred CEEEEEcCCcEEEEEEEEeCCCCCCCEEEEecChh
Confidence 5677888999888874 4688999999999843
No 44
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=65.98 E-value=24 Score=26.74 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.7
Q ss_pred cEEEec
Q psy8121 188 DICQIK 193 (285)
Q Consensus 188 Div~l~ 193 (285)
|.+.++
T Consensus 61 ~~v~le 66 (109)
T PRK05886 61 DTVDLE 66 (109)
T ss_pred CEEEEE
Confidence 444443
No 45
>PRK11507 ribosome-associated protein; Provisional
Probab=64.72 E-value=9.6 Score=26.40 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.6
Q ss_pred EEEECCEEEEEEcCCcccCcEEEecC
Q psy8121 169 SVIRQGEVKQISVGDIVVGDICQIKY 194 (285)
Q Consensus 169 ~V~rdg~~~~i~~~~lv~GDiv~l~~ 194 (285)
.|..||+...-.-+.|.|||+|.+..
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~g 63 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFAG 63 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEECC
Confidence 47789999999999999999998853
No 46
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=63.06 E-value=18 Score=25.72 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhh
Q psy8121 150 TKERQFRGLQSRI 162 (285)
Q Consensus 150 ~~~k~~~~l~~~~ 162 (285)
.++|+.++.+++.
T Consensus 22 pqkk~~k~~~~m~ 34 (82)
T PF02699_consen 22 PQKKQQKEHQEML 34 (82)
T ss_dssp HHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 47
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=63.04 E-value=25 Score=25.99 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q psy8121 142 IVTAFNDYTKERQFRGLQSRIE 163 (285)
Q Consensus 142 ~~~~~~~~~~~k~~~~l~~~~~ 163 (285)
++.++.-+.++|+.++-+++++
T Consensus 21 ifyFli~RPQrKr~K~~~~ml~ 42 (97)
T COG1862 21 IFYFLIIRPQRKRMKEHQELLN 42 (97)
T ss_pred HHHHhhcCHHHHHHHHHHHHHH
Confidence 3344444455555555555543
No 48
>PF15584 Imm44: Immunity protein 44
Probab=62.98 E-value=3.3 Score=30.16 Aligned_cols=20 Identities=30% Similarity=0.352 Sum_probs=16.1
Q ss_pred cCcEEEecCCCeeeccEEEE
Q psy8121 186 VGDICQIKYGDLLPADGCLI 205 (285)
Q Consensus 186 ~GDiv~l~~G~~iPaDg~il 205 (285)
+.+...|+.|++|||||+--
T Consensus 13 ~~~~~~I~SG~~iP~~GIwE 32 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIWE 32 (94)
T ss_pred CCCCCEEecCCCcccCCeEc
Confidence 44556789999999999873
No 49
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=61.57 E-value=93 Score=33.21 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=20.9
Q ss_pred CCEEEEEE--cCCcccCcEEEecCCCeeeccEEEEeeCceeE
Q psy8121 173 QGEVKQIS--VGDIVVGDICQIKYGDLLPADGCLIQSNDLKV 212 (285)
Q Consensus 173 dg~~~~i~--~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~v 212 (285)
-|....+. ..+.+|-|.+.++ |+ .-+|=-.+.|++.-+
T Consensus 249 pGDiv~l~~~~g~~iPaD~~ll~-g~-~~VdES~LTGES~Pv 288 (1054)
T TIGR01657 249 PGDIVSIPRPEEKTMPCDSVLLS-GS-CIVNESMLTGESVPV 288 (1054)
T ss_pred CCCEEEEecCCCCEecceEEEEe-Cc-EEEecccccCCccce
Confidence 45566666 6677777776664 32 234444445554333
No 50
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=59.96 E-value=12 Score=27.81 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=26.3
Q ss_pred EEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEE
Q psy8121 169 SVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLI 205 (285)
Q Consensus 169 ~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il 205 (285)
.|.-||+.. -++.++.+||+|.|.-|...- .-.|+
T Consensus 35 rV~vNG~~a-KpS~~VK~GD~l~i~~~~~~~-~v~Vl 69 (100)
T COG1188 35 RVKVNGQRA-KPSKEVKVGDILTIRFGNKEF-TVKVL 69 (100)
T ss_pred eEEECCEEc-ccccccCCCCEEEEEeCCcEE-EEEEE
Confidence 456688766 789999999999999887643 24444
No 51
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=59.46 E-value=19 Score=36.15 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=19.9
Q ss_pred cCCcccCcEEEe-cCCCeee-ccEEEE
Q psy8121 181 VGDIVVGDICQI-KYGDLLP-ADGCLI 205 (285)
Q Consensus 181 ~~~lv~GDiv~l-~~G~~iP-aDg~il 205 (285)
-.+|.+||.|.| ++||+|| .++++.
T Consensus 365 ~~~i~iGD~V~V~raGdVIP~i~~vv~ 391 (665)
T PRK07956 365 RKDIRIGDTVVVRRAGDVIPEVVGVVL 391 (665)
T ss_pred HcCCCCCCEEEEEECCCccceeeeeec
Confidence 468899999999 7899999 444443
No 52
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=57.89 E-value=5.7 Score=27.11 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=13.3
Q ss_pred EEECCEEEEEEcCCcccCcEEEe
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQI 192 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l 192 (285)
|..||+.+.-.-..|.+||+|.+
T Consensus 35 V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 35 VKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HEETTB----SS----SSEEEEE
T ss_pred eEECCEEccccCCcCCCCCEEEE
Confidence 66799888888999999999998
No 53
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=57.66 E-value=38 Score=25.44 Aligned_cols=11 Identities=9% Similarity=0.419 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q psy8121 150 TKERQFRGLQS 160 (285)
Q Consensus 150 ~~~k~~~~l~~ 160 (285)
++++..+++.+
T Consensus 41 K~~k~~~~~~~ 51 (106)
T PRK05585 41 KRQKEHKKMLS 51 (106)
T ss_pred HHHHHHHHHHH
Confidence 33333344443
No 54
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=57.17 E-value=15 Score=26.33 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=21.3
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEec
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIK 193 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~ 193 (285)
+...+..+++...+.+.+|.+||.|.+.
T Consensus 72 H~~~~~~~~~~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 72 HLLLVRDGGKLVWVFASELKPGDYVLVP 99 (100)
T ss_pred CEEEEecCCcEEEEEHHHCCCCCEEEec
Confidence 4455666777778899999999998764
No 55
>PRK06788 flagellar motor switch protein; Validated
Probab=42.06 E-value=54 Score=25.24 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=45.1
Q ss_pred EEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCCCCCceeccCCCCCeEeeccEeee-eeEEEEEEEecCc
Q psy8121 177 KQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVME-GSGKMLVTAVGVN 255 (285)
Q Consensus 177 ~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~v~~Gt~v~~-G~~~~~V~~tG~~ 255 (285)
..+...++-++|++.++.||+||.|-.+- .|+.-..+. ...|.|..... +..-+.++....+
T Consensus 40 aeLG~t~ltl~DlL~L~vGDVI~Ldk~~~----------------dpv~v~Vng-~~~f~G~~Gv~~~~~AVrItei~~~ 102 (119)
T PRK06788 40 VKLGKASITLGDVKQLKVGDVLEVEKNLG----------------HKVDVYLSN-MKVGIGEAIVMDEKFGIIISEIEAD 102 (119)
T ss_pred EEEecceecHHHHhCCCCCCEEEeCCcCC----------------CCEEEEECC-EEEEEEEEEEECCEEEEEEEEecCh
Confidence 44666788899999999999999875431 122222222 34666766665 4556778888876
Q ss_pred cHHHHHHHH
Q psy8121 256 SQAGIIFTL 264 (285)
Q Consensus 256 T~~g~i~~~ 264 (285)
-..+.+++.
T Consensus 103 ~~~~~~~~~ 111 (119)
T PRK06788 103 KKQAALMKA 111 (119)
T ss_pred HHHHHHHHH
Confidence 665555443
No 56
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=41.69 E-value=36 Score=27.49 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=31.0
Q ss_pred cCCcccCcEEEecCCCeee--ccEEEEeeCceeEeccccCCCCCceeccC-CCCCeEeeccEeeeeeE
Q psy8121 181 VGDIVVGDICQIKYGDLLP--ADGCLIQSNDLKVDESSLTGESDHVKKGE-AFDPMVLSGTHVMEGSG 245 (285)
Q Consensus 181 ~~~lv~GDiv~l~~G~~iP--aDg~il~g~~l~vdeS~LTGEs~pv~k~~-~~~~~v~~Gt~v~~G~~ 245 (285)
...+.+|.-+++..|..+| ||++|-.-.. .+.+. ..-+.+.. ...|+-..|+-+..|..
T Consensus 81 ~~~l~~g~av~I~TGa~vP~g~DaVV~~E~~-~~~~~-----~i~i~~~~~~g~nIr~~G~di~~G~~ 142 (162)
T PF03453_consen 81 PIPLQPGEAVRIMTGAPVPEGADAVVPIEDT-EVEGD-----EIRILKPVKPGQNIRPKGEDIKKGEV 142 (162)
T ss_dssp SSB--TTEEEEE-TTSB--TT-SEEEEGGGC-EEETT-----EEEESS--STTTTEE-TTSSB-TTSE
T ss_pred cccCCCCeEEEEeCCCccCCCCCEEEEehhe-eeccc-----EEEEeeccCCCCcEEeCCccccCCCE
Confidence 4689999999999999999 8988754332 34333 22222211 12367778888877774
No 57
>PRK08433 flagellar motor switch protein; Validated
Probab=41.35 E-value=26 Score=26.60 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=18.9
Q ss_pred EEEEcCCcccCcEEEecCCCeeeccE
Q psy8121 177 KQISVGDIVVGDICQIKYGDLLPADG 202 (285)
Q Consensus 177 ~~i~~~~lv~GDiv~l~~G~~iPaDg 202 (285)
..+...++-+.|++.+++||+||-|-
T Consensus 38 v~LG~t~itl~dlL~Lq~GDVI~Ld~ 63 (111)
T PRK08433 38 AELGTTQISLLEILKFEKGSVIDLEK 63 (111)
T ss_pred EEEecccccHHHHhCCCCCCEEEeCC
Confidence 34555677778888888888888764
No 58
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=40.52 E-value=19 Score=23.42 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=10.3
Q ss_pred ccCcEEEecCCC
Q psy8121 185 VVGDICQIKYGD 196 (285)
Q Consensus 185 v~GDiv~l~~G~ 196 (285)
.+||+|.|+.|-
T Consensus 2 ~~GDvV~LKSGG 13 (53)
T PF09926_consen 2 KIGDVVQLKSGG 13 (53)
T ss_pred CCCCEEEEccCC
Confidence 589999999874
No 59
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=40.09 E-value=67 Score=22.59 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=21.4
Q ss_pred eEEEEECCEEEEEE---cCCcccCcEEEecCCC
Q psy8121 167 KFSVIRQGEVKQIS---VGDIVVGDICQIKYGD 196 (285)
Q Consensus 167 ~~~V~rdg~~~~i~---~~~lv~GDiv~l~~G~ 196 (285)
.+.|-.+|..++++ ..++.|||-|.+..|-
T Consensus 16 ~A~v~~~G~~~~v~l~lv~~~~vGD~VLVH~G~ 48 (76)
T TIGR00074 16 IALVEFCGIKRDVSLDLVGEVKVGDYVLVHVGF 48 (76)
T ss_pred EEEEEcCCeEEEEEEEeeCCCCCCCEEEEecCh
Confidence 35555566666655 4578999999999884
No 60
>smart00532 LIGANc Ligase N family.
Probab=38.54 E-value=19 Score=34.35 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=18.3
Q ss_pred EcCCcccCcEEEe-cCCCeeec
Q psy8121 180 SVGDIVVGDICQI-KYGDLLPA 200 (285)
Q Consensus 180 ~~~~lv~GDiv~l-~~G~~iPa 200 (285)
.-.+|.+||.|.| ++||+||.
T Consensus 359 ~~~~i~iGd~V~V~raGdVIP~ 380 (441)
T smart00532 359 EEKDIRIGDTVVVRKAGDVIPK 380 (441)
T ss_pred HHcCCCCCCEEEEEECCCcCcc
Confidence 4578999999999 78999995
No 61
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=38.52 E-value=1.7e+02 Score=21.95 Aligned_cols=21 Identities=0% Similarity=-0.040 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q psy8121 143 VTAFNDYTKERQFRGLQSRIE 163 (285)
Q Consensus 143 ~~~~~~~~~~k~~~~l~~~~~ 163 (285)
+-++.-..++|..++.+++..
T Consensus 31 ~yf~~~RpqkK~~k~~~~~~~ 51 (106)
T PRK05585 31 FYFLIIRPQQKRQKEHKKMLS 51 (106)
T ss_pred HHHHhccHHHHHHHHHHHHHH
Confidence 334444567777777777655
No 62
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=37.36 E-value=28 Score=27.10 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=17.4
Q ss_pred EEEEcCCcccCcEEEecCCCeeeccEEE
Q psy8121 177 KQISVGDIVVGDICQIKYGDLLPADGCL 204 (285)
Q Consensus 177 ~~i~~~~lv~GDiv~l~~G~~iPaDg~i 204 (285)
..+++.+|.+||.+.-..|.......+-
T Consensus 70 gWv~A~~L~~GD~L~~~~G~~~~v~~i~ 97 (130)
T PF07591_consen 70 GWVEAEDLKVGDRLLTADGSWVTVTSIR 97 (130)
T ss_dssp --EEGGG--TTSEEEEE-SSEEEEE---
T ss_pred hhhhHhhCCCCCEEEcCCCCEEEEEEEE
Confidence 4789999999999998888876665543
No 63
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=37.05 E-value=51 Score=25.05 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=23.4
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEec
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIK 193 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~ 193 (285)
+...+..++.+..+.+.+|.+||.+.+.
T Consensus 72 H~~~~~~~~~~~~~~a~~l~~gd~l~~~ 99 (136)
T cd00081 72 HLLFVLEDGELKWVFASDLKPGDYVLVP 99 (136)
T ss_pred CEEEEEeCCeEEEEEHHHCCCCCEEEEc
Confidence 4556667777889999999999999987
No 64
>PRK11479 hypothetical protein; Provisional
Probab=36.54 E-value=9.8 Score=33.73 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.0
Q ss_pred EEEEcCCcccCcEEEecCCC
Q psy8121 177 KQISVGDIVVGDICQIKYGD 196 (285)
Q Consensus 177 ~~i~~~~lv~GDiv~l~~G~ 196 (285)
..|+..+|.|||||....+.
T Consensus 58 ~~Vs~~~LqpGDLVFfst~t 77 (274)
T PRK11479 58 KEITAPDLKPGDLLFSSSLG 77 (274)
T ss_pred cccChhhCCCCCEEEEecCC
Confidence 37889999999999987664
No 65
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=35.94 E-value=30 Score=37.32 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=26.8
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEecCCC
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIKYGD 196 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~ 196 (285)
+.+.++++|+|....+.+|.|||.|.+...+
T Consensus 988 HPVLv~~~Gk~i~K~A~dlK~GD~vvIPK~~ 1018 (1627)
T PRK14715 988 HPVMVYENGKFIKKRAMDVKEGDLMLIPKLD 1018 (1627)
T ss_pred CceEEeccCccceeehhhcCcCceeeccccc
Confidence 4567888999999999999999999987653
No 66
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=35.75 E-value=48 Score=23.13 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.7
Q ss_pred EEEECCEEEEEEcCCcccCcEEEecC
Q psy8121 169 SVIRQGEVKQISVGDIVVGDICQIKY 194 (285)
Q Consensus 169 ~V~rdg~~~~i~~~~lv~GDiv~l~~ 194 (285)
.|+.||+.+.-.-..|..||+|.+..
T Consensus 38 ~V~vNGe~EtRRgkKlr~gd~V~i~~ 63 (73)
T COG2501 38 EVKVNGEVETRRGKKLRDGDVVEIPG 63 (73)
T ss_pred eEEECCeeeeccCCEeecCCEEEECC
Confidence 68889999988999999999998753
No 67
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=34.56 E-value=43 Score=21.86 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=18.4
Q ss_pred EEECCEEEEEEcCCcccCcEEEe
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQI 192 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l 192 (285)
|.-||+...-+...|.+||.|.+
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 44589877677889999999876
No 68
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=34.04 E-value=37 Score=19.00 Aligned_cols=15 Identities=27% Similarity=0.466 Sum_probs=12.4
Q ss_pred CCCCCCCHHHHHHHHHh
Q psy8121 51 SEGLSGSAADMEHRRDT 67 (285)
Q Consensus 51 ~~GLs~~~~e~~~r~~~ 67 (285)
..||| .+++.+|++.
T Consensus 13 eh~ls--~ee~~~RL~~ 27 (28)
T PF12368_consen 13 EHGLS--EEEVAERLAA 27 (28)
T ss_pred hcCCC--HHHHHHHHHc
Confidence 46999 8999999874
No 69
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=33.86 E-value=2.5e+02 Score=27.49 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCccc-CcEEEecCCCeeeccEEEE
Q psy8121 127 WIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVV-GDICQIKYGDLLPADGCLI 205 (285)
Q Consensus 127 ~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~-GDiv~l~~G~~iPaDg~il 205 (285)
+-......+++++..+..+++.+.+.|+.+.++++.. ..... ..+- .- |....+..-+.+|-|-+++
T Consensus 15 ~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~-------~~~~~-~~v~----r~~g~~~~i~~~~l~~GDiv~v 82 (556)
T TIGR01525 15 MGLVLEGALLLFLFLLGETLEERAKGRASDALSALLA-------LAPST-ARVL----QGDGSEEEVPVEELQVGDIVIV 82 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCE-EEEE----ECCCeEEEEEHHHCCCCCEEEE
Confidence 4444444444444455566666777777777776532 11111 2211 12 3566777777778887777
Q ss_pred e-eCceeEeccccCCCCCceecc--CCCC--CeEeeccEeeeeeE
Q psy8121 206 Q-SNDLKVDESSLTGESDHVKKG--EAFD--PMVLSGTHVMEGSG 245 (285)
Q Consensus 206 ~-g~~l~vdeS~LTGEs~pv~k~--~~~~--~~v~~Gt~v~~G~~ 245 (285)
. |+.+-+|--.+.|+.. +.-. .|.. -....|..+.+|+.
T Consensus 83 ~~G~~iP~Dg~vi~g~~~-vdes~lTGEs~pv~k~~g~~v~aGt~ 126 (556)
T TIGR01525 83 RPGERIPVDGVVISGESE-VDESALTGESMPVEKKEGDEVFAGTI 126 (556)
T ss_pred CCCCEeccceEEEecceE-EeehhccCCCCCEecCCcCEEeeceE
Confidence 5 3334456555666532 2111 1111 12345666666654
No 70
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=33.08 E-value=25 Score=35.37 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=17.7
Q ss_pred EcCCcccCcEEEe-cCCCeeec
Q psy8121 180 SVGDIVVGDICQI-KYGDLLPA 200 (285)
Q Consensus 180 ~~~~lv~GDiv~l-~~G~~iPa 200 (285)
.-.+|.+||.|.| ++||+||.
T Consensus 361 ~~~di~iGD~V~V~raGdVIP~ 382 (669)
T PRK14350 361 DSIGLNVGDVVKISRRGDVIPA 382 (669)
T ss_pred HHcCCCCCCEEEEEecCCCCCc
Confidence 3567888999999 78999993
No 71
>PRK06033 hypothetical protein; Validated
Probab=32.97 E-value=19 Score=25.77 Aligned_cols=25 Identities=12% Similarity=0.389 Sum_probs=17.4
Q ss_pred EEEcCCcccCcEEEecCCCeeeccE
Q psy8121 178 QISVGDIVVGDICQIKYGDLLPADG 202 (285)
Q Consensus 178 ~i~~~~lv~GDiv~l~~G~~iPaDg 202 (285)
.....++-+.|++.+++||.||-|-
T Consensus 14 ~Lg~~~i~l~dlL~L~~GDVI~L~~ 38 (83)
T PRK06033 14 VLGRSSMPIHQVLRMGRGAVIPLDA 38 (83)
T ss_pred EEecccccHHHHhCCCCCCEEEeCC
Confidence 3445567777778888888877653
No 72
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=32.30 E-value=81 Score=20.11 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=9.8
Q ss_pred chHHHHHHHHhhh
Q psy8121 79 KTFLTLVWEALQD 91 (285)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (285)
+++|+.+|+.|+.
T Consensus 2 ~s~~~~~~~~f~~ 14 (56)
T PF12911_consen 2 RSPWKDAWRRFRR 14 (56)
T ss_pred CCHHHHHHHHHHh
Confidence 5778888888755
No 73
>PRK05015 aminopeptidase B; Provisional
Probab=32.16 E-value=60 Score=30.69 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=39.4
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEecCCCeee-----ccEEEEee----------CceeEeccccCCCCCc
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLP-----ADGCLIQS----------NDLKVDESSLTGESDH 223 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iP-----aDg~il~g----------~~l~vdeS~LTGEs~p 223 (285)
.++..+----+-.|+..-..|||||.-..|-.|- |.||++=+ -.+.||-+.|||-...
T Consensus 235 ~nV~~il~~aENmisg~A~kpgDVIt~~nGkTVEI~NTDAEGRLVLAD~L~yA~~~~p~~IID~ATLTGA~~~ 307 (424)
T PRK05015 235 KRVKLFLCCAENLISGNAFKLGDIITYRNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAKT 307 (424)
T ss_pred ceEEEEEEecccCCCCCCCCCCCEEEecCCcEEeeeccCccceeeehhHHHHhhhcCCCEEEEeeccchhhHh
Confidence 4444333323346778889999999999887664 55666532 2368999999997653
No 74
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=32.09 E-value=79 Score=29.45 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=25.5
Q ss_pred CeEEEEECCEEEEEEcCC------------cccCcEEEecCC--CeeeccEEE
Q psy8121 166 HKFSVIRQGEVKQISVGD------------IVVGDICQIKYG--DLLPADGCL 204 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~------------lv~GDiv~l~~G--~~iPaDg~i 204 (285)
..+.+.|+|+...++..+ |.+||+|.|..- ..|-+-|.+
T Consensus 211 ~~V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~~~~~v~V~GeV 263 (379)
T PRK15078 211 RNVVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVMGEV 263 (379)
T ss_pred ceEEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCCCCcEEEEeeec
Confidence 568889999988887432 667888877542 234444444
No 75
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=31.85 E-value=55 Score=34.06 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=28.1
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccE
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADG 202 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg 202 (285)
+.+.|.+||+...+.+.+|.+||.|.+.. .+|.++
T Consensus 169 H~~~v~~~g~~~~~~a~~l~~GD~i~~~~--~~~~~~ 203 (858)
T PRK14898 169 HSFVTRKDNEVIPVEGSELKIGDWLPVVR--SLPANC 203 (858)
T ss_pred CeEEEeeCCeEEEeeHHhCCCCCEEeeee--eccccc
Confidence 55668899999999999999999987754 556543
No 76
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=31.76 E-value=5e+02 Score=27.29 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEec
Q psy8121 173 QGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDE 214 (285)
Q Consensus 173 dg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vde 214 (285)
-|....+.+.|.+|-|.+.++.. -+-+|=-.+.|++.-|.-
T Consensus 174 ~GDiV~l~~Gd~IPaDg~li~g~-~l~VDES~LTGES~PV~K 214 (903)
T PRK15122 174 PGDIVHLSAGDMIPADVRLIESR-DLFISQAVLTGEALPVEK 214 (903)
T ss_pred CCCEEEECCCCEEeeeEEEEEcC-ceEEEccccCCCCcceee
Confidence 45566666666666666655432 233454445455433433
No 77
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=31.56 E-value=97 Score=26.59 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=13.4
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEecCCCee
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIKYGDLL 198 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~i 198 (285)
..|+|..||..+.++ +|..|.|.||+.|
T Consensus 137 ~~v~V~~DG~~~t~~-----aG~~l~L~PGESi 164 (225)
T PF07385_consen 137 TDVTVPVDGIRRTVP-----AGTQLRLNPGESI 164 (225)
T ss_dssp S-EEEEETTEEEEE------TT-EEEE-TT-EE
T ss_pred CCeEEecCCcEEEec-----CCceEEeCCCCeE
Confidence 456666777666554 3555555555543
No 78
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=31.35 E-value=28 Score=34.20 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.0
Q ss_pred cCCcccCcEEEe-cCCCeeec
Q psy8121 181 VGDIVVGDICQI-KYGDLLPA 200 (285)
Q Consensus 181 ~~~lv~GDiv~l-~~G~~iPa 200 (285)
-.+|.+||.|.| ++||+||.
T Consensus 357 ~~~I~iGD~V~V~raGdVIP~ 377 (562)
T PRK08097 357 QWDIAPGDQVLVSLAGQGIPR 377 (562)
T ss_pred HcCCCCCCEEEEEecCCCCcc
Confidence 467889998888 88999995
No 79
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=31.25 E-value=84 Score=29.05 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=20.5
Q ss_pred CeEEEEECCEEEEEEcCC----------cccCcEEEecC
Q psy8121 166 HKFSVIRQGEVKQISVGD----------IVVGDICQIKY 194 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~----------lv~GDiv~l~~ 194 (285)
..+++.|+|+...++..+ |.+||+|.+..
T Consensus 198 ~~V~l~R~~~~~~i~l~dL~~~~~~ni~L~~GDvI~V~~ 236 (355)
T PRK15175 198 MEVHVTRQQHYFTARLSDIYQYPGLDIALQPDDRITLRQ 236 (355)
T ss_pred cEEEEEECCEEEEEEHHHHhhCCcCCcEeCCCCEEEEcc
Confidence 568899999988876655 44666666643
No 80
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=31.11 E-value=28 Score=23.75 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=19.4
Q ss_pred HhcCCCCCCCCCCchHHHHHHHHhhhhHHHH
Q psy8121 66 DTFGSNTIPPKPPKTFLTLVWEALQDVTLII 96 (285)
Q Consensus 66 ~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~l 96 (285)
+.|+.|.......+|||..++.-+.-.++.+
T Consensus 8 ~q~~~~q~~y~~lkPWwdvf~~YL~~~mlmi 38 (65)
T PF12534_consen 8 QQYSENQPCYRILKPWWDVFFDYLVLLMLMI 38 (65)
T ss_pred HHHHhhHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 3455666666667789988877665433333
No 81
>KOG3416|consensus
Probab=30.54 E-value=31 Score=26.72 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=13.1
Q ss_pred CCcccCcEEEecCCCe
Q psy8121 182 GDIVVGDICQIKYGDL 197 (285)
Q Consensus 182 ~~lv~GDiv~l~~G~~ 197 (285)
..+.|||||.+..|-.
T Consensus 60 ~~~~PGDIirLt~Gy~ 75 (134)
T KOG3416|consen 60 CLIQPGDIIRLTGGYA 75 (134)
T ss_pred cccCCccEEEecccch
Confidence 5689999999988743
No 82
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=29.94 E-value=3e+02 Score=22.33 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=17.0
Q ss_pred CHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCC
Q psy8121 38 GIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIP 74 (285)
Q Consensus 38 ~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~ 74 (285)
+-+|++++|++. .+-+++-+..|+.+..+
T Consensus 42 sEeeii~~LG~P--------~~iA~~i~~~~~i~~~~ 70 (181)
T PF08006_consen 42 SEEEIIAELGSP--------KEIAREILAEYSIKEEE 70 (181)
T ss_pred CHHHHHHHcCCH--------HHHHHHHHHhhhhhhhh
Confidence 568888888753 34444445566654443
No 83
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=29.67 E-value=31 Score=34.83 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=20.3
Q ss_pred EcCCcccCcEEEe-cCCCeeec-cEEEE
Q psy8121 180 SVGDIVVGDICQI-KYGDLLPA-DGCLI 205 (285)
Q Consensus 180 ~~~~lv~GDiv~l-~~G~~iPa-Dg~il 205 (285)
.-.+|.+||.|.| ++||+||. .+++.
T Consensus 386 ~~~di~iGD~V~V~raGdVIPkI~~vv~ 413 (689)
T PRK14351 386 EELGVNVGDRVRVKRAGDVIPYVEEVVE 413 (689)
T ss_pred HHcCCCCCCEEEEEecCCccceeeeeec
Confidence 4568899999999 78999994 44443
No 84
>KOG0210|consensus
Probab=29.48 E-value=5e+02 Score=26.68 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhcCCC----eEEEEECCEEEEEEcCCcccCcEEEecCC
Q psy8121 140 VVIVTAFNDYTKERQFRG-LQSRIEGEH----KFSVIRQGEVKQISVGDIVVGDICQIKYG 195 (285)
Q Consensus 140 ~~~~~~~~~~~~~k~~~~-l~~~~~~~~----~~~V~rdg~~~~i~~~~lv~GDiv~l~~G 195 (285)
-..+.-+.++++.+..++ +-..+.... +..-+.=|....+.-.+=||-|.|.++.-
T Consensus 145 keavdd~~r~~rd~~~Nse~y~~ltr~~~~~~~Ss~i~vGDvi~v~K~~RVPADmilLrTs 205 (1051)
T KOG0210|consen 145 KEAVDDLKRRRRDRELNSEKYTKLTRDGTRREPSSDIKVGDVIIVHKDERVPADMILLRTS 205 (1051)
T ss_pred HHHHHHHHHHHhhhhhhhhhheeeccCCcccccccccccccEEEEecCCcCCcceEEEEcc
Confidence 456777888877776543 222221111 12224456778888899999999999643
No 85
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=29.36 E-value=81 Score=29.74 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.4
Q ss_pred cCCcccCcEEEecCCCeee--ccEEEEe
Q psy8121 181 VGDIVVGDICQIKYGDLLP--ADGCLIQ 206 (285)
Q Consensus 181 ~~~lv~GDiv~l~~G~~iP--aDg~il~ 206 (285)
...+.+|.-+++..|..+| ||++|-.
T Consensus 87 ~~~~~~g~av~I~TGa~vP~gaDaVv~~ 114 (411)
T PRK10680 87 HGEWPAGTCIRIMTGAPVPEGCEAVVMQ 114 (411)
T ss_pred CcccCCCeEEEEecCCcCCCCCCEEEEE
Confidence 4578899999999999999 8888863
No 86
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=29.22 E-value=32 Score=34.54 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=17.8
Q ss_pred EcCCcccCcEEEe-cCCCeeec
Q psy8121 180 SVGDIVVGDICQI-KYGDLLPA 200 (285)
Q Consensus 180 ~~~~lv~GDiv~l-~~G~~iPa 200 (285)
.-.+|.+||.|.| ++||+||.
T Consensus 352 ~~~~i~iGD~V~V~raGdVIP~ 373 (652)
T TIGR00575 352 EELDIRIGDTVVVRKAGDVIPK 373 (652)
T ss_pred HHcCCCCCCEEEEEecCCcCce
Confidence 3468899999999 78999993
No 87
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=29.17 E-value=20 Score=25.04 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=13.6
Q ss_pred EcCCcccCcEEEecCCCeeecc
Q psy8121 180 SVGDIVVGDICQIKYGDLLPAD 201 (285)
Q Consensus 180 ~~~~lv~GDiv~l~~G~~iPaD 201 (285)
...++-++|+..+++||.+|.|
T Consensus 17 g~~~itl~ell~L~~Gdvi~L~ 38 (77)
T TIGR02480 17 GRTRITLGDLLKLGEGSVIELD 38 (77)
T ss_pred eceEeEHHHHhcCCCCCEEEcC
Confidence 3345556666666777776665
No 88
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=28.91 E-value=3.2e+02 Score=24.90 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCCCC
Q psy8121 58 AADMEHRRDTFGSNT 72 (285)
Q Consensus 58 ~~e~~~r~~~~G~N~ 72 (285)
.+++++-+++||-|+
T Consensus 46 ~e~~~~~~~~~GLd~ 60 (339)
T PRK10914 46 PERHAQLLAELGLDK 60 (339)
T ss_pred HHHHHHHHHHHCCCC
Confidence 666666777777764
No 89
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=28.13 E-value=1.1e+02 Score=21.77 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=21.5
Q ss_pred eEEEEECCEEEEEEcC-------CcccCcEEEecCCC
Q psy8121 167 KFSVIRQGEVKQISVG-------DIVVGDICQIKYGD 196 (285)
Q Consensus 167 ~~~V~rdg~~~~i~~~-------~lv~GDiv~l~~G~ 196 (285)
.+.|-.+|..++|+.. ++.|||-|.++.|-
T Consensus 19 ~A~vd~~Gv~r~V~l~Lv~~~~~~~~vGDyVLVHaGf 55 (82)
T PRK10413 19 LAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGF 55 (82)
T ss_pred EEEEEcCCeEEEEEeeeeccCCcccccCCEEEEecch
Confidence 4666677777776632 45689999999884
No 90
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=27.93 E-value=1.2e+02 Score=19.51 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=26.5
Q ss_pred CeEEEE-ECCEEEEEEcC-CcccCcEEEecCCCeeec
Q psy8121 166 HKFSVI-RQGEVKQISVG-DIVVGDICQIKYGDLLPA 200 (285)
Q Consensus 166 ~~~~V~-rdg~~~~i~~~-~lv~GDiv~l~~G~~iPa 200 (285)
..+.|+ .||+...|+.. +..+||-|.+.+.+..+.
T Consensus 6 ~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~~~ 42 (56)
T PF12791_consen 6 KYAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDIINK 42 (56)
T ss_pred CEEEEEcCCCcEEEEeCCCCCcccCEEEEechhhccc
Confidence 455555 68888888744 799999999988877653
No 91
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=27.56 E-value=41 Score=25.45 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=23.4
Q ss_pred EEcCCcccCcEEEecCCCeeeccEEEEeeCceeEeccccCC
Q psy8121 179 ISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTG 219 (285)
Q Consensus 179 i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vdeS~LTG 219 (285)
.+.++|..||| |+|-++..++.+.+|.+.+.+
T Consensus 29 ~~VeELkEgdI---------L~e~I~~k~~~v~~d~~~~~~ 60 (110)
T PF06819_consen 29 KPVEELKEGDI---------LGEIIYEKDDGVYRDRSSFFK 60 (110)
T ss_pred ccHhhcCccce---------ehheEEEeCCcEEEecccHHH
Confidence 34567888886 488888887778888776654
No 92
>PRK10352 nickel transporter permease NikB; Provisional
Probab=27.47 E-value=4.6e+02 Score=23.60 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCCC
Q psy8121 58 AADMEHRRDTFGSNT 72 (285)
Q Consensus 58 ~~e~~~r~~~~G~N~ 72 (285)
.+++++.+++||-|+
T Consensus 48 ~e~~~~~~~~~Gld~ 62 (314)
T PRK10352 48 PEMLASTRTMLGLDQ 62 (314)
T ss_pred HHHHHHHHHHhCCCC
Confidence 667777777777765
No 93
>PRK15133 microcin C ABC transporter permease YejB; Provisional
Probab=27.47 E-value=3.6e+02 Score=24.96 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.4
Q ss_pred CCCCCHHHHHHHHHhcCCCCC
Q psy8121 53 GLSGSAADMEHRRDTFGSNTI 73 (285)
Q Consensus 53 GLs~~~~e~~~r~~~~G~N~i 73 (285)
+.+ .+++++-+++||-|+.
T Consensus 80 ~~~--~e~~~~~~~~~GLd~p 98 (364)
T PRK15133 80 GLD--PEVIAEITHRYGFDKP 98 (364)
T ss_pred CCC--HHHHHHHHHHhCCCCC
Confidence 345 6777778888888753
No 94
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=27.45 E-value=97 Score=24.67 Aligned_cols=34 Identities=3% Similarity=0.011 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEc
Q psy8121 146 FNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISV 181 (285)
Q Consensus 146 ~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~ 181 (285)
|...+++|.+.++.+.-- +-..+..|-+|-.++.
T Consensus 51 lcssRKkKaaAAi~eedi--QfinpyqDqqw~~v~p 84 (189)
T PF05568_consen 51 LCSSRKKKAAAAIEEEDI--QFINPYQDQQWAGVTP 84 (189)
T ss_pred HHhhhhHHHHhhhhhhcc--cccCcccchhhccCCC
Confidence 445566677777765321 3344566777765543
No 95
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=27.45 E-value=82 Score=16.60 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=15.4
Q ss_pred cccCcEEEecCCCeeeccEEEEe
Q psy8121 184 IVVGDICQIKYGDLLPADGCLIQ 206 (285)
Q Consensus 184 lv~GDiv~l~~G~~iPaDg~il~ 206 (285)
+.+||.|.+..|..----|.+++
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~ 24 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLE 24 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEE
Confidence 56888888887765544555543
No 96
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.44 E-value=1.6e+02 Score=21.59 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=31.4
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEec--CCCeeeccEEEEeeCceeEec
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIK--YGDLLPADGCLIQSNDLKVDE 214 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~--~G~~iPaDg~il~g~~l~vde 214 (285)
.+..-+||..+ +.-+|||++.|- ..++--|..-+++-+.+..|+
T Consensus 20 rKTITIRD~SE-----Shf~~g~vlrV~r~Ed~~~fc~I~vl~vspvtld~ 65 (106)
T COG3097 20 RKTITIRDKSE-----SHFKPGDVLRVGRFEDDRYFCTIEVLAVSPVTLDE 65 (106)
T ss_pred CceEEEeccch-----hcCCCCCEEEEEEecCCcEEEEEEEEEeccEehhh
Confidence 34445677643 468899999994 567778888888777666665
No 97
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=27.37 E-value=7.5e+02 Score=26.03 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=8.5
Q ss_pred EEEecCCCeeeccEEEEe
Q psy8121 189 ICQIKYGDLLPADGCLIQ 206 (285)
Q Consensus 189 iv~l~~G~~iPaDg~il~ 206 (285)
...+..-+.+|-|-++++
T Consensus 175 ~~~I~~~eLvpGDiV~l~ 192 (902)
T PRK10517 175 WLEIPIDQLVPGDIIKLA 192 (902)
T ss_pred EEEEEHHhCCCCCEEEEC
Confidence 444444444454544443
No 98
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=27.13 E-value=4.1e+02 Score=22.89 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=7.2
Q ss_pred CchHHHHHHHHhh
Q psy8121 78 PKTFLTLVWEALQ 90 (285)
Q Consensus 78 ~~~~~~~~~~~~~ 90 (285)
.+..++.+|..|+
T Consensus 6 ~~~~~~Qi~q~y~ 18 (224)
T PF13829_consen 6 KPGRRKQIWQAYK 18 (224)
T ss_pred cchHHHHHHHHHH
Confidence 4455666666554
No 99
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=27.06 E-value=1.3e+02 Score=29.01 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=39.7
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEecCCCeee-----ccEEEEeeC----------ceeEeccccCCCC
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLP-----ADGCLIQSN----------DLKVDESSLTGES 221 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iP-----aDg~il~g~----------~l~vdeS~LTGEs 221 (285)
.++..+----+-.++..-..|||||.-..|-.|- |.||++=+. ...||=+.|||--
T Consensus 284 vnV~~i~~~~EN~is~~A~rPgDVi~s~~GkTVEI~NTDAEGRLVLaDal~ya~~~~p~~iIDiATLTGA~ 354 (468)
T cd00433 284 VNVVGVLPLAENMISGNAYRPGDVITSRSGKTVEILNTDAEGRLVLADALTYAQEFKPDLIIDIATLTGAA 354 (468)
T ss_pred ceEEEEEEeeecCCCCCCCCCCCEeEeCCCcEEEEecCCcccceeehhHHHHHhhcCCCEEEEecchHHHH
Confidence 3444443333446888899999999999998775 667777432 3578999999853
No 100
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=26.96 E-value=5.6e+02 Score=24.44 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=17.2
Q ss_pred EEEECC-EEEEEE-cCCcccCcEEEe
Q psy8121 169 SVIRQG-EVKQIS-VGDIVVGDICQI 192 (285)
Q Consensus 169 ~V~rdg-~~~~i~-~~~lv~GDiv~l 192 (285)
+|.-+| .|+-++ .+.+..||-|.+
T Consensus 393 ~V~v~GE~W~AvS~~~~I~kG~~VkV 418 (436)
T COG1030 393 FVLVEGERWRAVSEGEPIEKGEKVKV 418 (436)
T ss_pred EEEECCEEEEEeeCCCcccCCCEEEE
Confidence 454444 477777 788888988877
No 101
>COG4709 Predicted membrane protein [Function unknown]
Probab=26.61 E-value=3.8e+02 Score=22.42 Aligned_cols=9 Identities=44% Similarity=0.401 Sum_probs=4.2
Q ss_pred HHHHHHHhC
Q psy8121 39 IQEICKKLY 47 (285)
Q Consensus 39 ~~~l~~~l~ 47 (285)
-+|+.++|+
T Consensus 43 E~EI~~~LG 51 (195)
T COG4709 43 EEEIAKDLG 51 (195)
T ss_pred HHHHHHHhC
Confidence 444444444
No 102
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=25.96 E-value=1.2e+02 Score=22.02 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=21.3
Q ss_pred eEEEEECCEEEEEEcC---------CcccCcEEEecCCC
Q psy8121 167 KFSVIRQGEVKQISVG---------DIVVGDICQIKYGD 196 (285)
Q Consensus 167 ~~~V~rdg~~~~i~~~---------~lv~GDiv~l~~G~ 196 (285)
.++|-..|..++|+.. ++.+||-|.++.|-
T Consensus 16 ~A~vd~~Gv~reV~l~Lv~~~~~~~~~~vGDyVLVHaGf 54 (90)
T PRK10409 16 QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGF 54 (90)
T ss_pred eEEEEcCCeEEEEEEeeecccCCCCccCCCCEEEEecCh
Confidence 4566667766666533 46899999999884
No 103
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=25.62 E-value=30 Score=26.92 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=19.5
Q ss_pred EEEEcCCcccCcEEEecCCCeeeccE
Q psy8121 177 KQISVGDIVVGDICQIKYGDLLPADG 202 (285)
Q Consensus 177 ~~i~~~~lv~GDiv~l~~G~~iPaDg 202 (285)
..+....+-++|++.+++|++||.|-
T Consensus 57 v~LG~t~ltl~dlL~L~~GDVI~Ld~ 82 (127)
T PRK08983 57 MEVGRSFISIRNLLQLNQGSVVELDR 82 (127)
T ss_pred EEEecCcccHHHHhCCCCCCEEEeCC
Confidence 34556677888888888888888764
No 104
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=25.39 E-value=1.6e+02 Score=19.18 Aligned_cols=19 Identities=11% Similarity=0.452 Sum_probs=11.6
Q ss_pred CchHHHHHHHHhhhhHHHH
Q psy8121 78 PKTFLTLVWEALQDVTLII 96 (285)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l 96 (285)
|.+||-.+.+.+-+..+++
T Consensus 19 ~NsF~fViik~vismimyl 37 (54)
T PF04835_consen 19 PNSFWFVIIKSVISMIMYL 37 (54)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 4577777777665544333
No 105
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=25.31 E-value=77 Score=24.90 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=22.3
Q ss_pred EEECCEEEEEEcCCcccCcEEEecCCCe
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQIKYGDL 197 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l~~G~~ 197 (285)
|.-||+. .-++.++.+||.|.|..|..
T Consensus 36 V~vnG~~-~Kps~~V~~gd~l~v~~~~~ 62 (133)
T PRK10348 36 VHYNGQR-SKPSKIVELNATLTLRQGND 62 (133)
T ss_pred EEECCEE-CCCCCccCCCCEEEEEECCE
Confidence 4458887 78899999999999988764
No 106
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=25.25 E-value=6.8e+02 Score=26.89 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc---CCCeE-EE----EECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeE
Q psy8121 141 VIVTAFNDYTKERQFRGLQSRIE---GEHKF-SV----IRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKV 212 (285)
Q Consensus 141 ~~~~~~~~~~~~k~~~~l~~~~~---~~~~~-~V----~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~v 212 (285)
.+..-+...+.-.+++++..-.. ...+. .+ +--|....+.+.|.+|-|...++. ..+-+|=-.|.|++.-|
T Consensus 98 ~~~QE~~aekal~aL~~l~~~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~-~~L~VDES~LTGES~pV 176 (1053)
T TIGR01523 98 GFIQEYKAEKTMDSLKNLASPMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIET-KNFDTDEALLTGESLPV 176 (1053)
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEe-CceEEEchhhcCCCCce
Confidence 34554555555555555544221 11111 11 235778889999999999998874 34456666666776555
Q ss_pred ecccc--C--CCCCce-ec----cCCCCCeEeeccEeeeeeEEEEEEEec
Q psy8121 213 DESSL--T--GESDHV-KK----GEAFDPMVLSGTHVMEGSGKMLVTAVG 253 (285)
Q Consensus 213 deS~L--T--GEs~pv-~k----~~~~~~~v~~Gt~v~~G~~~~~V~~tG 253 (285)
+-... . .+..|. .+ ..| ..|.+|.-..--..++.-+..|
T Consensus 177 ~K~~~~~~~~~~~~~~~d~~n~lf~G--T~V~~G~g~~vVvatG~~T~~G 224 (1053)
T TIGR01523 177 IKDAHATFGKEEDTPIGDRINLAFSS--SAVTKGRAKGICIATALNSEIG 224 (1053)
T ss_pred eccccccccccccCCcccCCCccccC--ceEEeeeEEEEEEEecCccHHH
Confidence 44321 1 121222 11 234 4677887443334455556666
No 107
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=24.89 E-value=38 Score=26.41 Aligned_cols=17 Identities=12% Similarity=0.358 Sum_probs=13.9
Q ss_pred EEEcCCcccCcEEEecC
Q psy8121 178 QISVGDIVVGDICQIKY 194 (285)
Q Consensus 178 ~i~~~~lv~GDiv~l~~ 194 (285)
.|+.+++.|||+|..+.
T Consensus 71 ~v~~~~~qpGDlvff~~ 87 (134)
T TIGR02219 71 PVPCDAAQPGDVLVFRW 87 (134)
T ss_pred ccchhcCCCCCEEEEee
Confidence 46677999999999863
No 108
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=24.78 E-value=2.4e+02 Score=27.68 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hhcCCCe-EEE----EECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCc
Q psy8121 142 IVTAFNDYTKERQFRGLQS-------RIEGEHK-FSV----IRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSND 209 (285)
Q Consensus 142 ~~~~~~~~~~~k~~~~l~~-------~~~~~~~-~~V----~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~ 209 (285)
+++.+..++.++.+++|.+ ....... ..| ++-|....+...+.+|-|-+.++ |+ .-+|=-.+.|++
T Consensus 69 ~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~-g~-~~vdes~lTGEs 146 (562)
T TIGR01511 69 WLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIE-GE-SEVDESLVTGES 146 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEecCceEEEE-Cc-eEEehHhhcCCC
Confidence 3455566666666666544 1111111 233 45788889999999999988886 32 134444444544
No 109
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=24.42 E-value=1.1e+02 Score=30.13 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.7
Q ss_pred EcCCcccCcEEEecCCCeee--ccEEEE
Q psy8121 180 SVGDIVVGDICQIKYGDLLP--ADGCLI 205 (285)
Q Consensus 180 ~~~~lv~GDiv~l~~G~~iP--aDg~il 205 (285)
+...+.+|.-+.+..|..+| ||++|-
T Consensus 87 ~~~~l~~GeAv~I~TGaplP~GaDAVV~ 114 (546)
T PRK14497 87 KEIHIKECEAVEVDTGSMIPMGADAVIK 114 (546)
T ss_pred CCcccCCCceEEeccCCCCCCCCCEEEE
Confidence 34578899999999999999 999887
No 110
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=24.26 E-value=3.5e+02 Score=28.93 Aligned_cols=118 Identities=8% Similarity=0.119 Sum_probs=67.9
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHh-hhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8121 78 PKTFLTLVWEALQDVTLIILEIAALVSLGL-SFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFR 156 (285)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~ 156 (285)
|..+|..|.+...-.++++.++..+..+.. ..+. .+.-.++++++..+--++.-+..+++.+..+
T Consensus 18 p~~l~~qf~~~~N~yfl~i~ilq~ip~~s~~~~~t--------------~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n 83 (1057)
T TIGR01652 18 PKNLFEQFKRFANLYFLVVALLQQVPILSPTYRGT--------------SIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN 83 (1057)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHcCCCcCCCCccH--------------hHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 567888888776666655544444321110 1110 2222344444445667788888888878766
Q ss_pred HHHhhhcCC--Ce----EEEEECCEEEEEEcCCcccCcEEEecCCC---eeeccEEEEeeCc
Q psy8121 157 GLQSRIEGE--HK----FSVIRQGEVKQISVGDIVVGDICQIKYGD---LLPADGCLIQSND 209 (285)
Q Consensus 157 ~l~~~~~~~--~~----~~V~rdg~~~~i~~~~lv~GDiv~l~~G~---~iPaDg~il~g~~ 209 (285)
.-.-..-.. .. ..=++-|....+...|.+|-|++.+...+ ..-+|--.+.|++
T Consensus 84 ~~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs 145 (1057)
T TIGR01652 84 NRLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDGET 145 (1057)
T ss_pred CcEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceEEEEeeccCCee
Confidence 544432211 11 12246778889999999999999997533 2445555555543
No 111
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=24.19 E-value=3.6e+02 Score=29.08 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhc
Q psy8121 95 IILEIAALVSLGLSFY 110 (285)
Q Consensus 95 ~ll~~~ai~s~~~~~~ 110 (285)
.++++++++||+++++
T Consensus 159 ~i~l~~~v~Swifg~~ 174 (1227)
T COG5038 159 AIVLIGSVASWIFGYL 174 (1227)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566788888888743
No 112
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=23.81 E-value=1.1e+02 Score=28.53 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.2
Q ss_pred CCcccCcEEEecCCCeee--ccEEEEe
Q psy8121 182 GDIVVGDICQIKYGDLLP--ADGCLIQ 206 (285)
Q Consensus 182 ~~lv~GDiv~l~~G~~iP--aDg~il~ 206 (285)
..+.+|.-+++..|..+| ||++|-.
T Consensus 79 ~~~~~g~av~I~TGa~lP~gaDaVV~~ 105 (394)
T cd00887 79 GPLGPGEAVRIMTGAPLPEGADAVVMV 105 (394)
T ss_pred cccCCCeEEEEcCCCCCCCCCCEEEEE
Confidence 478899999999999999 9998864
No 113
>COG3768 Predicted membrane protein [Function unknown]
Probab=23.43 E-value=5.4e+02 Score=23.48 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=11.3
Q ss_pred CCCCCchHHHHHHHHhh
Q psy8121 74 PPKPPKTFLTLVWEALQ 90 (285)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ 90 (285)
+..+.++||+.++..+.
T Consensus 56 ~~rpr~s~~k~~~~a~~ 72 (350)
T COG3768 56 PLRPRSSFWKIMLGAGG 72 (350)
T ss_pred hccccchHHHHHHHHHH
Confidence 33456789988777653
No 114
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=22.71 E-value=6.2e+02 Score=26.72 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhc--CCCe-EEE----EECCEEEEEEcCCcccCcEEEecCCCee
Q psy8121 127 WIEGLAILISVIVVVIVTAFNDYTKERQFRGLQS-RIE--GEHK-FSV----IRQGEVKQISVGDIVVGDICQIKYGDLL 198 (285)
Q Consensus 127 ~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~-~~~--~~~~-~~V----~rdg~~~~i~~~~lv~GDiv~l~~G~~i 198 (285)
.+-.+++++.+++..+-.+.+++..++..+...+ ... ...+ ..+ +.-|....+...+.+|.|.+.++. +..
T Consensus 132 ~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g-~~l 210 (941)
T TIGR01517 132 VAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISG-LSL 210 (941)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEc-CcE
Confidence 3334445555555556666666555553332222 111 1122 222 356888999999999999998863 333
Q ss_pred eccEEEEeeCc
Q psy8121 199 PADGCLIQSND 209 (285)
Q Consensus 199 PaDg~il~g~~ 209 (285)
-+|=-.+.|++
T Consensus 211 ~VdES~LTGES 221 (941)
T TIGR01517 211 EIDESSITGES 221 (941)
T ss_pred EEEecccCCCC
Confidence 35555555554
No 115
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=22.64 E-value=1.8e+02 Score=28.19 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=37.9
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEecCCCeee-----ccEEEEeeC----------ceeEeccccCCCC
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLP-----ADGCLIQSN----------DLKVDESSLTGES 221 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iP-----aDg~il~g~----------~l~vdeS~LTGEs 221 (285)
..+..+--=-+-.++..-..|||||.-..|-.|- |.||++=+. ...||-+.|||--
T Consensus 298 vnV~~v~~l~ENm~~~~A~rPgDVi~~~~GkTVEV~NTDAEGRLvLADal~ya~~~~p~~iiDiATLTGa~ 368 (483)
T PRK00913 298 VNVVGVVAACENMPSGNAYRPGDVLTSMSGKTIEVLNTDAEGRLVLADALTYAERFKPDAIIDVATLTGAC 368 (483)
T ss_pred ceEEEEEEeeccCCCCCCCCCCCEEEECCCcEEEeecCCcccceeehhHHHHhhhcCCCEEEEecchHHHH
Confidence 3444333333446778899999999999997765 566776322 3578888888753
No 116
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=22.55 E-value=9e+02 Score=25.28 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=30.2
Q ss_pred ECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEec
Q psy8121 172 RQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDE 214 (285)
Q Consensus 172 rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vde 214 (285)
.-|....+...+.+|-|.+.++ |.-+-+|=-.+.|++.-|+-
T Consensus 150 v~GDiV~l~~Gd~VPaDg~li~-g~~l~VDES~LTGES~PV~K 191 (867)
T TIGR01524 150 VPGDLIELAAGDIIPADARVIS-ARDLFINQSALTGESLPVEK 191 (867)
T ss_pred CCCCEEEECCCCEEcccEEEEe-cCceEEEcccccCCCCcccc
Confidence 4677889999999999988886 44345677777777644433
No 117
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.45 E-value=6.2e+02 Score=26.67 Aligned_cols=112 Identities=17% Similarity=0.246 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc----CCCeEEE----EECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEeeCcee
Q psy8121 140 VVIVTAFNDYTKERQFRGLQSRIE----GEHKFSV----IRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLK 211 (285)
Q Consensus 140 ~~~~~~~~~~~~~k~~~~l~~~~~----~~~~~~V----~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~ 211 (285)
..+..-++..+.-++++++.+... ......+ +.-|....+.+.|.+|-|...++.-+ .-+|=-.|.|++.-
T Consensus 119 ~g~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~-l~VdEs~LTGES~p 197 (917)
T COG0474 119 LGFVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSD-LEVDESALTGESLP 197 (917)
T ss_pred HHHHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecC-ceEEcccccCCCcc
Confidence 346777777777666666655432 1222222 35688899999999999999998877 45666667777655
Q ss_pred Eecccc--CCCCCcee-cc-----CCCCCeEeeccEeeeeeEEEEEEEecC
Q psy8121 212 VDESSL--TGESDHVK-KG-----EAFDPMVLSGTHVMEGSGKMLVTAVGV 254 (285)
Q Consensus 212 vdeS~L--TGEs~pv~-k~-----~~~~~~v~~Gt~v~~G~~~~~V~~tG~ 254 (285)
+.--.. +.|..|.. -. .| ..+.+|+-..--..++.-|..|.
T Consensus 198 v~K~~~~~~~~~~~~~~d~~n~l~sG--t~V~~G~~~giVvaTG~~T~~G~ 246 (917)
T COG0474 198 VEKQALPLTKSDAPLGLDRDNMLFSG--TTVVSGRAKGIVVATGFETEFGK 246 (917)
T ss_pred hhccccccccccccccCCccceEEeC--CEEEcceEEEEEEEEcCccHHHH
Confidence 543222 23444443 21 24 56777774433333444444443
No 118
>PLN03190 aminophospholipid translocase; Provisional
Probab=22.03 E-value=3.2e+02 Score=29.77 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=13.1
Q ss_pred cCcEEEecCCCeeeccEEEEe
Q psy8121 186 VGDICQIKYGDLLPADGCLIQ 206 (285)
Q Consensus 186 ~GDiv~l~~G~~iPaDg~il~ 206 (285)
-|....+...+..|-|.+.+.
T Consensus 178 ~~~~~~i~~~~i~vGDiv~v~ 198 (1178)
T PLN03190 178 DDQFQEKKWKDIRVGEIIKIQ 198 (1178)
T ss_pred CCeEEEEeHHHCCCCCEEEEC
Confidence 355566666666666666664
No 119
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=22.02 E-value=1.7e+02 Score=27.03 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8121 131 LAILISVIVVVIVTAFNDYTKERQFRG 157 (285)
Q Consensus 131 ~~il~~~~~~~~~~~~~~~~~~k~~~~ 157 (285)
++|++++++.+++-.+.+|++.|.+++
T Consensus 317 IAIvvIVLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 317 IAILIIVLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 344444444566777788888877664
No 120
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=21.96 E-value=52 Score=20.25 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=17.7
Q ss_pred EEECCEEEEEEcCCcccCcEE
Q psy8121 170 VIRQGEVKQISVGDIVVGDIC 190 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv 190 (285)
|.-||+...-+...+.+||+|
T Consensus 28 V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 28 VKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp EEETTEEESSTTSBESTTEEE
T ss_pred EEECCEEEcCCCCCCCCcCCC
Confidence 667998888888899999986
No 121
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.92 E-value=4.4e+02 Score=21.45 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=21.0
Q ss_pred HHhhcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHh
Q psy8121 33 VNELGGIQEICKKLYTSPSEGLSGSAADMEHRRDT 67 (285)
Q Consensus 33 ~~~~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~ 67 (285)
+++...++++.+++.. ..++ -+|+.+|+++
T Consensus 64 l~~l~~v~~l~~~~~~---~~~~--~~ea~~~L~~ 93 (193)
T PF06738_consen 64 LDKLAAVNRLSRRIVA---GQLS--LEEAIERLDE 93 (193)
T ss_pred HHHHHHHHHHHHHHhc---CCCC--HHHHHHHHHH
Confidence 3445556777777755 4778 7888888875
No 122
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=21.88 E-value=88 Score=18.86 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=13.8
Q ss_pred cccCcEEEecCCCeeeccEEEEeeC
Q psy8121 184 IVVGDICQIKYGDLLPADGCLIQSN 208 (285)
Q Consensus 184 lv~GDiv~l~~G~~iPaDg~il~g~ 208 (285)
++|||.+-.. .+.+|-.|.-++..
T Consensus 2 V~PG~~l~~~-~e~~~G~GTY~~~g 25 (39)
T PF14382_consen 2 VVPGDRLGSS-EEYMPGHGTYVRDG 25 (39)
T ss_dssp E-TT-EEEET-TTSEESTTEEEETT
T ss_pred CCCCCEeecC-CCEecCCCEEEeCC
Confidence 3578877664 46677776666543
No 123
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.81 E-value=2.4e+02 Score=19.70 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy8121 95 IILEIAALVSLGLSFYK 111 (285)
Q Consensus 95 ~ll~~~ai~s~~~~~~~ 111 (285)
.++.++++++++.+++.
T Consensus 15 ~il~~~~iisfi~Gy~~ 31 (76)
T PF06645_consen 15 YILIISAIISFIVGYIT 31 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55667778888887653
No 124
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=21.77 E-value=52 Score=23.12 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=9.8
Q ss_pred CcccCcEEEecCC
Q psy8121 183 DIVVGDICQIKYG 195 (285)
Q Consensus 183 ~lv~GDiv~l~~G 195 (285)
-+.|||+|.+++=
T Consensus 46 ~I~~GD~V~Ve~~ 58 (75)
T COG0361 46 RILPGDVVLVELS 58 (75)
T ss_pred EeCCCCEEEEEec
Confidence 4679999988753
No 125
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=21.64 E-value=75 Score=26.94 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=26.4
Q ss_pred EEEECCEEEEEEcCCcccCcEEEecCCCeee
Q psy8121 169 SVIRQGEVKQISVGDIVVGDICQIKYGDLLP 199 (285)
Q Consensus 169 ~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iP 199 (285)
.|.-||+.+.+|+-.+.|||.+.|+.-+.-|
T Consensus 120 HI~VnGk~V~iPSy~V~~gdei~V~~k~~s~ 150 (205)
T COG0522 120 HILVNGKRVNIPSYLVSPGDEISVREKSKSP 150 (205)
T ss_pred eEEECCEEeccCcEEecCCCEEEeeecccch
Confidence 4677999999999999999999998655544
No 126
>PTZ00046 rifin; Provisional
Probab=21.60 E-value=1.7e+02 Score=27.04 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8121 131 LAILISVIVVVIVTAFNDYTKERQFRG 157 (285)
Q Consensus 131 ~~il~~~~~~~~~~~~~~~~~~k~~~~ 157 (285)
++|++++++.+++-.+.+|++.|.+++
T Consensus 322 iAIvVIVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 322 VAIVVIVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 444444445566777788888877664
No 127
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=21.23 E-value=1.3e+02 Score=28.61 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=10.0
Q ss_pred CcccCcEEEecCCCeeec
Q psy8121 183 DIVVGDICQIKYGDLLPA 200 (285)
Q Consensus 183 ~lv~GDiv~l~~G~~iPa 200 (285)
.++|||.|.|+.|..-..
T Consensus 13 ~a~pGD~I~L~~Gty~~~ 30 (425)
T PF14592_consen 13 NAKPGDTIVLADGTYKDV 30 (425)
T ss_dssp H--TT-EEEE-SEEEET-
T ss_pred hCCCCCEEEECCceeecc
Confidence 567888888888877644
No 128
>PRK08916 flagellar motor switch protein; Reviewed
Probab=21.17 E-value=44 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=17.7
Q ss_pred EEEcCCcccCcEEEecCCCeeeccE
Q psy8121 178 QISVGDIVVGDICQIKYGDLLPADG 202 (285)
Q Consensus 178 ~i~~~~lv~GDiv~l~~G~~iPaDg 202 (285)
.+....+-+.|++.+++|++||.|-
T Consensus 52 ~LG~~~ltl~ELL~L~~GDVI~Ld~ 76 (116)
T PRK08916 52 VLGRSKMDVGQLLKLGPGSVLELDR 76 (116)
T ss_pred EEecccccHHHHhcCCCCCEEEcCC
Confidence 3455667777778888888877763
No 129
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=21.15 E-value=99 Score=26.11 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.7
Q ss_pred EEECCEEEEEEcCCcccCcEEEecC
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQIKY 194 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l~~ 194 (285)
|.-||+...+++..+.+||+|.+..
T Consensus 116 V~VNGk~v~~ps~~Vk~GD~I~V~~ 140 (201)
T CHL00113 116 ILVNGRIVDIPSYRCKPKDIITVKD 140 (201)
T ss_pred EEECCEEecCccccCCCCCEEEEcc
Confidence 5569999999999999999999864
No 130
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=20.96 E-value=1.3e+02 Score=21.78 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=22.2
Q ss_pred EEEEEcCCcccCcEEEecCCCeeeccEEEEeeCceeEe
Q psy8121 176 VKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVD 213 (285)
Q Consensus 176 ~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g~~l~vd 213 (285)
...++..++.|||+|.... ...|.-.-|.-|+.-.+.
T Consensus 44 ~~~~~~~~~~pGDlif~~~-~~~~~Hvgiy~g~~~~ih 80 (105)
T PF00877_consen 44 QKRVPISELQPGDLIFFKG-GGGISHVGIYLGDGKFIH 80 (105)
T ss_dssp EEHEEGGG-TTTEEEEEEG-TGGEEEEEEEEETTEEEE
T ss_pred ccccchhcCCcccEEEEeC-CccCCEeEEEEeCCeEEE
Confidence 3468999999999999988 333333333334443333
No 131
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=20.81 E-value=2.8e+02 Score=18.76 Aligned_cols=8 Identities=25% Similarity=1.099 Sum_probs=4.8
Q ss_pred hHHHHHHH
Q psy8121 80 TFLTLVWE 87 (285)
Q Consensus 80 ~~~~~~~~ 87 (285)
.+++.+|+
T Consensus 5 ~~fk~iW~ 12 (63)
T PF06341_consen 5 KFFKTIWK 12 (63)
T ss_pred HHHHHHHH
Confidence 45666666
No 132
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=20.80 E-value=79 Score=21.00 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=10.1
Q ss_pred CcccCcEEEecC
Q psy8121 183 DIVVGDICQIKY 194 (285)
Q Consensus 183 ~lv~GDiv~l~~ 194 (285)
.+++||.|.+++
T Consensus 40 ~~~vGD~V~~~~ 51 (64)
T cd04451 40 RILPGDRVKVEL 51 (64)
T ss_pred ccCCCCEEEEEE
Confidence 489999999984
No 133
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=20.69 E-value=1e+02 Score=25.96 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=22.8
Q ss_pred EEEECCEEEEEEcCCcccCcEEEecCC
Q psy8121 169 SVIRQGEVKQISVGDIVVGDICQIKYG 195 (285)
Q Consensus 169 ~V~rdg~~~~i~~~~lv~GDiv~l~~G 195 (285)
.|.-||+....++..+.+||+|.+...
T Consensus 119 ~V~VNgk~v~~ps~~v~~GD~I~v~~~ 145 (203)
T PRK05327 119 HILVNGKKVNIPSYRVKPGDVIEVREK 145 (203)
T ss_pred cEEECCEEECCCCcCCCCCCEEEECCc
Confidence 366699988889999999999999753
No 134
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.62 E-value=1.8e+02 Score=26.16 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8121 130 GLAILISVIVVVIVTAFNDYTKERQFRG 157 (285)
Q Consensus 130 ~~~il~~~~~~~~~~~~~~~~~~k~~~~ 157 (285)
.++|++++++.+++-.+.+|++.|.+.+
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKKmkK 289 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKKMKK 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3444444445556667777887665543
No 135
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=20.21 E-value=3.5e+02 Score=22.24 Aligned_cols=56 Identities=29% Similarity=0.411 Sum_probs=36.5
Q ss_pred ccccCHHHHHHHHHhcCh-----hhHHHHHhhcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCC
Q psy8121 10 QYGVTLRQLRELMEHRGR-----EGIAKVNELGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNT 72 (285)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~ 72 (285)
.+.++.+.|+.+++.... +-++.+-.+|.--++...| -||| ..|+..|++.-|-..
T Consensus 55 ~i~in~~~l~~~L~~~~~~~~~~~~idr~L~lGAS~~mm~~~-----FGls--~~ev~~rR~llgi~~ 115 (180)
T PF11198_consen 55 SISINHDVLWRLLEQARREQQEQQLIDRALRLGASIEMMQRL-----FGLS--SAEVAARRRLLGIPV 115 (180)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-----HCCC--HHHHHHHHHHhCCCC
Confidence 467788888888764322 1222333356555666666 3999 899999998877654
No 136
>PRK06437 hypothetical protein; Provisional
Probab=20.17 E-value=1.5e+02 Score=20.03 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=17.9
Q ss_pred CCeEEEEECCEEEEEEcCCcccCcEEEe
Q psy8121 165 EHKFSVIRQGEVKQISVGDIVVGDICQI 192 (285)
Q Consensus 165 ~~~~~V~rdg~~~~i~~~~lv~GDiv~l 192 (285)
+..+.|.+||+... +...|..||.|.+
T Consensus 34 ~~~vaV~vNg~iv~-~~~~L~dgD~Vei 60 (67)
T PRK06437 34 EEEYVVIVNGSPVL-EDHNVKKEDDVLI 60 (67)
T ss_pred CccEEEEECCEECC-CceEcCCCCEEEE
Confidence 35677788887665 4445667777655
Done!