Query psy8121
Match_columns 285
No_of_seqs 233 out of 1703
Neff 8.5
Searched_HMMs 13730
Date Fri Aug 16 19:09:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wpga1 b.82.7.1 (A:125-239) C 100.0 2.4E-31 1.8E-35 201.5 10.4 99 167-265 2-115 (115)
2 d1wpga4 f.33.1.1 (A:1-124,A:24 99.8 1.3E-18 9.3E-23 162.1 10.8 136 35-206 5-140 (472)
3 d1dgsa2 b.40.4.6 (A:315-400) N 70.6 0.76 5.6E-05 30.5 1.4 22 179-200 48-70 (86)
4 d1c06a_ d.66.1.2 (A:) Ribosoma 65.8 1.2 9E-05 33.0 1.8 26 170-195 78-103 (159)
5 d1dq3a1 b.86.1.2 (A:1-128,A:41 62.9 5.4 0.00039 29.5 5.2 35 166-200 99-134 (168)
6 d2z1ca1 b.40.14.1 (A:2-72) Hyd 61.4 8.8 0.00064 24.0 5.2 32 166-197 14-48 (71)
7 d1dm9a_ d.66.1.3 (A:) Heat sho 58.6 2.4 0.00017 29.0 2.2 27 170-197 32-58 (104)
8 d1vioa2 d.66.1.5 (A:0-57) Pseu 55.2 1.6 0.00011 26.4 0.6 29 170-199 28-56 (58)
9 d2gy9d1 d.66.1.2 (D:2-205) Rib 51.8 1.7 0.00012 33.6 0.4 27 170-196 121-147 (204)
10 d2uubd1 d.66.1.2 (D:2-209) Rib 48.9 3.1 0.00023 32.1 1.6 26 170-195 125-150 (208)
11 d1at0a_ b.86.1.1 (A:) Hedgehog 45.6 15 0.0011 25.6 5.0 31 166-196 72-104 (145)
12 d3d3ra1 b.40.14.1 (A:1-76) Hyd 43.6 15 0.0011 23.2 4.1 31 166-196 17-51 (76)
13 d2ftsa2 b.103.1.1 (A:318-498) 42.6 16 0.0011 27.1 4.8 65 180-245 82-152 (181)
14 d2nqra2 b.103.1.1 (A:7-177) Mo 41.4 15 0.0011 27.0 4.5 27 180-206 80-108 (171)
15 d1p9ka_ d.66.1.6 (A:) Hypothet 37.8 3.7 0.00027 26.4 0.3 28 170-198 48-75 (79)
16 d1wu2a2 b.103.1.1 (A:6-180) Mo 36.0 16 0.0012 26.9 3.9 61 180-245 86-148 (175)
17 d2dsma1 d.372.1.1 (A:1-64) Hyp 34.2 7.7 0.00056 23.3 1.3 18 181-198 26-43 (64)
18 d1c7va_ a.39.1.5 (A:) Calcium 32.5 46 0.0033 19.7 5.7 51 16-72 2-52 (68)
19 d2evra2 d.3.1.16 (A:87-234) Ce 29.6 13 0.00095 26.7 2.3 20 177-196 67-86 (148)
20 d2ot2a1 b.40.14.1 (A:1-90) Hyd 28.5 39 0.0028 21.9 4.4 31 166-196 15-54 (90)
21 d1uz5a2 b.103.1.1 (A:5-180) Mo 28.3 22 0.0016 26.1 3.5 59 181-245 86-147 (176)
22 d1d7ya2 c.3.1.5 (A:116-236) NA 27.5 80 0.0058 20.9 7.2 33 168-206 87-119 (121)
23 d2ba0a2 b.84.4.2 (A:2-52) Exos 26.7 12 0.0009 21.7 1.3 23 184-208 4-26 (51)
24 d1vcta2 d.286.1.1 (A:108-201) 26.4 27 0.002 22.4 3.3 25 169-193 47-73 (94)
25 d1te7a_ b.122.1.7 (A:) Hypothe 26.1 23 0.0016 23.5 2.7 43 166-213 20-64 (103)
26 d1m6ia2 c.3.1.5 (A:264-400) Ap 24.3 89 0.0065 21.0 6.2 38 167-206 97-134 (137)
27 d1rutx4 g.39.1.3 (X:114-146) L 23.4 23 0.0017 18.0 1.8 15 182-196 7-21 (33)
28 d1nhpa2 c.3.1.5 (A:120-242) NA 22.9 99 0.0072 20.4 7.2 37 166-205 85-121 (123)
29 d1g2ha_ a.4.1.12 (A:) Transcri 21.0 56 0.0041 19.2 3.8 31 33-71 30-60 (61)
30 d1iz6a1 b.34.5.2 (A:2-70) Euka 20.7 32 0.0023 21.0 2.6 20 174-193 1-20 (69)
31 d2q07a1 b.122.1.1 (A:460-527) 20.2 27 0.002 21.4 2.1 16 181-196 23-38 (68)
No 1
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=99.97 E-value=2.4e-31 Score=201.54 Aligned_cols=99 Identities=35% Similarity=0.479 Sum_probs=90.2
Q ss_pred eEEEEECCEE--EEEEcCCcccCcEEEecCCCeeeccEEEEee--CceeEeccccCCCCCceeccCC-----------CC
Q psy8121 167 KFSVIRQGEV--KQISVGDIVVGDICQIKYGDLLPADGCLIQS--NDLKVDESSLTGESDHVKKGEA-----------FD 231 (285)
Q Consensus 167 ~~~V~rdg~~--~~i~~~~lv~GDiv~l~~G~~iPaDg~il~g--~~l~vdeS~LTGEs~pv~k~~~-----------~~ 231 (285)
.++|+|+|++ ++|++++|||||||.|++|++|||||+|+++ .++.||||+|||||.|+.|.+. ..
T Consensus 2 ~~kV~R~g~~~v~~I~~~eLv~GDiv~l~~G~~vPaD~~ll~~~~~~l~vdes~lTGEs~pv~K~~~~~~~~~~~~~~~~ 81 (115)
T d1wpga1 2 MGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKK 81 (115)
T ss_dssp EEEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCCEEECHHHHSCCSCEECCCSCCCCTTCCGGGCT
T ss_pred ceEEEECCCceEEEEeHHHCCCCCEEEECCCCEEeeceEEEEeeccceEEEEeecccceEEEEeeccccccccccccccc
Confidence 4789999985 6899999999999999999999999999864 3478999999999999999752 35
Q ss_pred CeEeeccEeeeeeEEEEEEEecCccHHHHHHHHH
Q psy8121 232 PMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLL 265 (285)
Q Consensus 232 ~~v~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~ 265 (285)
|++|+||.|.+|+++++|++||.+|++|+|.+++
T Consensus 82 n~lf~GT~V~~G~~~~~V~~tG~~T~~G~i~~~i 115 (115)
T d1wpga1 82 NMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 115 (115)
T ss_dssp TEECTTCEEEECEEEEEEEECGGGSHHHHHHHHH
T ss_pred ceEEeccEEEeeeEEEEEEEEccccHHHHHHHhC
Confidence 7899999999999999999999999999999875
No 2
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=99.75 E-value=1.3e-18 Score=162.12 Aligned_cols=136 Identities=22% Similarity=0.356 Sum_probs=118.8
Q ss_pred hhcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccCCC
Q psy8121 35 ELGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPAD 114 (285)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~ll~~~ai~s~~~~~~~~~~ 114 (285)
|-.++||++++|++|+++||| ++|+++|+++||+|+++.++++++|+.++++|++++.++|++++++|++++.+...
T Consensus 5 h~~~~e~v~~~l~td~~~GLs--~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~- 81 (472)
T d1wpga4 5 HSKSTEECLAYFGVSETTGLT--PDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEG- 81 (472)
T ss_dssp GGSCHHHHHHHHTCCTTTCBC--HHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHTSCT-
T ss_pred hhCCHHHHHHHhCcCcccCcC--HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcc-
Confidence 347899999999999999999 99999999999999999999999999999999999999999999999999876532
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEECCEEEEEEcCCcccCcEEEecC
Q psy8121 115 EDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKY 194 (285)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~V~rdg~~~~i~~~~lv~GDiv~l~~ 194 (285)
......|.++.++++++++++.++.+||++++|+..+++++.+.. ..
T Consensus 82 ------~~~~~~~~~~~~I~~vv~~n~~i~~~qe~~a~~~~~~l~~~~~~~---------------------------~~ 128 (472)
T d1wpga4 82 ------EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPAA---------------------------TE 128 (472)
T ss_dssp ------TSTTSSSHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHGGGSCCC---------------------------CC
T ss_pred ------cccchhHhHhhhhhheeeeeeeEEeEEechHHHHHHHHhhhcccc---------------------------cc
Confidence 122347999999999999999999999999999999998875421 35
Q ss_pred CCeeeccEEEEe
Q psy8121 195 GDLLPADGCLIQ 206 (285)
Q Consensus 195 G~~iPaDg~il~ 206 (285)
||++|+|.++.+
T Consensus 129 ~~~~P~d~~l~~ 140 (472)
T d1wpga4 129 QDKTPLQQKLDE 140 (472)
T ss_dssp CCCCHHHHHHHH
T ss_pred ccCchHHHHHHH
Confidence 888999987753
No 3
>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
Probab=70.64 E-value=0.76 Score=30.52 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=18.6
Q ss_pred EEcCCcccCcEEEe-cCCCeeec
Q psy8121 179 ISVGDIVVGDICQI-KYGDLLPA 200 (285)
Q Consensus 179 i~~~~lv~GDiv~l-~~G~~iPa 200 (285)
+.-.+|-+||.|.+ ++||.||-
T Consensus 48 i~~~~i~~Gd~V~i~raGdVIP~ 70 (86)
T d1dgsa2 48 IEELDIRIGDWVLVHKAGGVIPE 70 (86)
T ss_dssp HHHTTCBSSCEEEEEEETTTEEE
T ss_pred HhhcCCCcCceEEEEECCCCccc
Confidence 34568999999998 78999995
No 4
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=65.77 E-value=1.2 Score=33.05 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=23.6
Q ss_pred EEECCEEEEEEcCCcccCcEEEecCC
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQIKYG 195 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l~~G 195 (285)
+.-||+...||+-.+.|||+|.+++.
T Consensus 78 i~vNgk~v~iPSy~vk~GDvIsvkek 103 (159)
T d1c06a_ 78 ILVDGSRVNIPSYRVKPGQTIAVREK 103 (159)
T ss_dssp EEETTEECCCSSCCCCSSCEEEECGG
T ss_pred eEccceEEEecceeecCCcEEeeccc
Confidence 66799999999999999999999754
No 5
>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=62.90 E-value=5.4 Score=29.47 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=26.9
Q ss_pred CeEEEEE-CCEEEEEEcCCcccCcEEEecCCCeeec
Q psy8121 166 HKFSVIR-QGEVKQISVGDIVVGDICQIKYGDLLPA 200 (285)
Q Consensus 166 ~~~~V~r-dg~~~~i~~~~lv~GDiv~l~~G~~iPa 200 (285)
++..+.+ +|+.+.+++.+|.+||.+.-..|..++.
T Consensus 99 Hp~~v~~~~~~~~~~~a~~L~~GD~l~~~~~~~~v~ 134 (168)
T d1dq3a1 99 HPFFVLTPDFKIVEKRADELKEGDILIGGMGLEVVR 134 (168)
T ss_dssp CEEEEECTTSCEEEEETTTCCTTCEECBCCHCEEEE
T ss_pred ceEEEecCCCeEEEEEcccCCCCCEEEecCcceeEE
Confidence 5566776 4688899999999999998766665543
No 6
>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=61.37 E-value=8.8 Score=24.04 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=25.0
Q ss_pred CeEEEEECCEEEEEEc---CCcccCcEEEecCCCe
Q psy8121 166 HKFSVIRQGEVKQISV---GDIVVGDICQIKYGDL 197 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~---~~lv~GDiv~l~~G~~ 197 (285)
..+.|-.+|..++++. .++.|||-|.++.|--
T Consensus 14 ~~A~vd~~G~~r~v~l~lv~e~~vGDyVLVh~G~A 48 (71)
T d2z1ca1 14 PVAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGFA 48 (71)
T ss_dssp TEEEEEETTEEEEEECTTSTTCCTTCEEEEETTEE
T ss_pred CEEEEEcCCeEEEEEEEeeCCCCCCCEEEEeechh
Confidence 4566778888888774 5788999999999843
No 7
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}
Probab=58.57 E-value=2.4 Score=28.99 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=22.1
Q ss_pred EEECCEEEEEEcCCcccCcEEEecCCCe
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQIKYGDL 197 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l~~G~~ 197 (285)
|.-||+... ++..+.+||+|.+..+..
T Consensus 32 V~vNg~~vK-ps~~vk~GDvI~i~~~~~ 58 (104)
T d1dm9a_ 32 VHYNGQRSK-PSKIVELNATLTLRQGND 58 (104)
T ss_dssp EEETTEECC-TTCBCCTTCEEEEEETTE
T ss_pred eeeCCeecc-ccccCCCCCEEEEEeCCe
Confidence 455998764 799999999999987764
No 8
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=55.21 E-value=1.6 Score=26.41 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=23.4
Q ss_pred EEECCEEEEEEcCCcccCcEEEecCCCeee
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQIKYGDLLP 199 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l~~G~~iP 199 (285)
|.-||+...-+..++.+||.|.+. |+.+|
T Consensus 28 V~Vng~~v~~~~~~v~~~d~I~~~-g~~l~ 56 (58)
T d1vioa2 28 VKINGEIVKSGSVQISQEDEIYFE-DELLT 56 (58)
T ss_dssp EEETTEECCCTTCEECTTSCEEET-TEECC
T ss_pred EEECCEEeCCCCCCCCCCCEEEEC-CEEcc
Confidence 556998888889999999999885 66665
No 9
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=51.76 E-value=1.7 Score=33.65 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.1
Q ss_pred EEECCEEEEEEcCCcccCcEEEecCCC
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQIKYGD 196 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l~~G~ 196 (285)
|.-||+.+.||+-.+.|||+|.+++..
T Consensus 121 i~VNgk~VnIPSy~vk~GDvIsvkeks 147 (204)
T d2gy9d1 121 IMVNGRVVNIASYQVSPNDVVSIREKA 147 (204)
T ss_dssp EEESSSBCCCTTCBCCTTCBEEECTTG
T ss_pred eecCCEEEEeccEeecCCCEEEeccch
Confidence 556999999999999999999998754
No 10
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=48.94 E-value=3.1 Score=32.12 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=23.6
Q ss_pred EEECCEEEEEEcCCcccCcEEEecCC
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQIKYG 195 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l~~G 195 (285)
|.-||+.+.||+-.+.|||+|.+++.
T Consensus 125 i~vNg~~v~ips~~~~~gd~I~vrek 150 (208)
T d2uubd1 125 ITVNGRRVDLPSYRVRPGDEIAVAEK 150 (208)
T ss_dssp EEETTEECCCTTCBCCTTCEEEECGG
T ss_pred eecCCeEEEeccEEecCCceeehhhc
Confidence 66799999999999999999999754
No 11
>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=45.57 E-value=15 Score=25.58 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=23.8
Q ss_pred CeEEEEE--CCEEEEEEcCCcccCcEEEecCCC
Q psy8121 166 HKFSVIR--QGEVKQISVGDIVVGDICQIKYGD 196 (285)
Q Consensus 166 ~~~~V~r--dg~~~~i~~~~lv~GDiv~l~~G~ 196 (285)
+.+.+.+ ++....+.+++|.+||.|.+..++
T Consensus 72 H~~~v~~~~~~~~~~v~a~~l~~GD~l~~~~~~ 104 (145)
T d1at0a_ 72 HLVSVWQPESQKLTFVFADRIEEKNQVLVRDVE 104 (145)
T ss_dssp CEEEEEETTTTEEEEEEGGGCCTTCEEEEECTT
T ss_pred ceEEEEcCCCCceeEEEeeeecCCCEEEEEcCC
Confidence 4555555 457788999999999999986654
No 12
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]}
Probab=43.62 E-value=15 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=23.6
Q ss_pred CeEEEEECCEEEEEEc---C-CcccCcEEEecCCC
Q psy8121 166 HKFSVIRQGEVKQISV---G-DIVVGDICQIKYGD 196 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~---~-~lv~GDiv~l~~G~ 196 (285)
..++|-.+|..++++. . ++.|||-|.++.|-
T Consensus 17 ~~a~vd~~G~~r~v~l~lv~e~v~vGDyVLVH~G~ 51 (76)
T d3d3ra1 17 QSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGF 51 (76)
T ss_dssp TEEEEEETTEEEEEECTTBSSCCCTTCEEEEEEEE
T ss_pred cEEEEECCCeEEEEEEEeccCCCCCCCEEEEecch
Confidence 3567778898888863 3 37899999999873
No 13
>d2ftsa2 b.103.1.1 (A:318-498) Gephyrin, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=42.59 E-value=16 Score=27.07 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=40.8
Q ss_pred EcCCcccCcEEEecCCCeee--ccEEEEeeCceeEeccccCCCCC---ceeccC-CCCCeEeeccEeeeeeE
Q psy8121 180 SVGDIVVGDICQIKYGDLLP--ADGCLIQSNDLKVDESSLTGESD---HVKKGE-AFDPMVLSGTHVMEGSG 245 (285)
Q Consensus 180 ~~~~lv~GDiv~l~~G~~iP--aDg~il~g~~l~vdeS~LTGEs~---pv~k~~-~~~~~v~~Gt~v~~G~~ 245 (285)
+...+.+|+-+++..|..+| ||++|-.-.. .+.+....|... -+.+.. ..+|+-..|+-+..|..
T Consensus 82 ~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~-~~~~~~~~~~~~~~i~i~~~~~~g~~Ir~~GeD~~~G~~ 152 (181)
T d2ftsa2 82 PTQTVMPGQVMRVTTGAPIPCGADAVVQVEDT-ELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGEC 152 (181)
T ss_dssp CCCCCCTTEEEEECTTCBCCTTCCEEEEGGGE-EEEEESTTSSCEEEEEECSCCCTTTTEECTTSSBCTTCE
T ss_pred ccccccCceEEEcccCcccccccceEEEeeee-EEeccccccccccceEEeccccCCCccccchhccCCCCE
Confidence 35688999999999999999 9999875443 443332222211 111111 12367777887777773
No 14
>d2nqra2 b.103.1.1 (A:7-177) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Escherichia coli [TaxId: 562]}
Probab=41.41 E-value=15 Score=27.00 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.5
Q ss_pred EcCCcccCcEEEecCCCeee--ccEEEEe
Q psy8121 180 SVGDIVVGDICQIKYGDLLP--ADGCLIQ 206 (285)
Q Consensus 180 ~~~~lv~GDiv~l~~G~~iP--aDg~il~ 206 (285)
....|.+|..+++..|..+| ||++|-.
T Consensus 80 ~~~~l~~g~~~~I~TGa~lP~gaDaVI~~ 108 (171)
T d2nqra2 80 YHGEWPAGTCIRIMTGAPVPEGCEAVVMQ 108 (171)
T ss_dssp CCSCCCTTCEEEECTTCBCCTTCCEEEEG
T ss_pred CccccccCcceEEeccccccccccEEEEE
Confidence 45678999999999999999 9998864
No 15
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=37.77 E-value=3.7 Score=26.43 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=22.8
Q ss_pred EEECCEEEEEEcCCcccCcEEEecCCCee
Q psy8121 170 VIRQGEVKQISVGDIVVGDICQIKYGDLL 198 (285)
Q Consensus 170 V~rdg~~~~i~~~~lv~GDiv~l~~G~~i 198 (285)
|.-||+...-+...+.+||+|.+. |+.+
T Consensus 48 V~VNG~~~~~p~~~V~~~d~I~vd-G~~i 75 (79)
T d1p9ka_ 48 VKVDGAVETRKRCKIVAGQTVSFA-GHSV 75 (79)
T ss_dssp HEETTBCCCCSSCCCCSSEEEEET-TEEE
T ss_pred cccCCEEeccccccCCCCCEEEEC-CEEE
Confidence 556998888899999999999885 6543
No 16
>d1wu2a2 b.103.1.1 (A:6-180) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}
Probab=36.02 E-value=16 Score=26.87 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=39.0
Q ss_pred EcCCcccCcEEEecCCCeee--ccEEEEeeCceeEeccccCCCCCceeccCCCCCeEeeccEeeeeeE
Q psy8121 180 SVGDIVVGDICQIKYGDLLP--ADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVMEGSG 245 (285)
Q Consensus 180 ~~~~lv~GDiv~l~~G~~iP--aDg~il~g~~l~vdeS~LTGEs~pv~k~~~~~~~v~~Gt~v~~G~~ 245 (285)
+...|.+|.-+++..|..+| ||++|-.-. +.+++-.+.=- .|+. ++ +|+-..|+-+..|..
T Consensus 86 ~~~~l~~g~~v~I~TGa~iP~g~d~VI~~E~-~~~~~~~i~i~-~~~~--~g-~nIr~~G~d~~~G~~ 148 (175)
T d1wu2a2 86 AKEEVTTGKAIKVLTGTRIPKGANAVIMQEM-VKREGDKIYVL-RPVA--PG-QNIAFTGEDVKKGEV 148 (175)
T ss_dssp CSSCCCTTEEEEECTTCBCCTTCCEEEEGGG-SEEETTEEEEC-SCCC--TT-TTEECTTSSBCTTCE
T ss_pred ccccccCCceEEEeeccceeeccchheeeee-eecCCceEEEe-cCCC--CC-CceeccccccCCCCE
Confidence 35689999999999999999 999987543 24433221110 1111 12 367777887777763
No 17
>d2dsma1 d.372.1.1 (A:1-64) Hypothetical protein YqaI {Bacillus subtilis [TaxId: 1423]}
Probab=34.22 E-value=7.7 Score=23.32 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=14.1
Q ss_pred cCCcccCcEEEecCCCee
Q psy8121 181 VGDIVVGDICQIKYGDLL 198 (285)
Q Consensus 181 ~~~lv~GDiv~l~~G~~i 198 (285)
-+++-|||-+.+.||+++
T Consensus 26 Gsev~p~Dd~li~pGEv~ 43 (64)
T d2dsma1 26 GDEVTPVDDYVIDGGEII 43 (64)
T ss_dssp SSCBCTTSCEEEETTEEE
T ss_pred ccccccCCceEEcCCeee
Confidence 467888888888888765
No 18
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Probab=32.49 E-value=46 Score=19.70 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=36.0
Q ss_pred HHHHHHHHhcChhhHHHHHhhcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCCC
Q psy8121 16 RQLRELMEHRGREGIAKVNELGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNT 72 (285)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N~ 72 (285)
++++.+|...+... .-+.+.+++...+..-....+| .+++..-.+.+-.|.
T Consensus 2 eel~~~F~~~D~d~----~G~I~~~el~~~l~~~g~~~~s--~~e~~~~~~~~D~d~ 52 (68)
T d1c7va_ 2 EEILRAFKVFDANG----DGVIDFDEFKFIMQKVGEEPLT--DAEVEEAMKEADEDG 52 (68)
T ss_dssp HHHHHHHHHHSCSG----GGEECHHHHHHHSSTTTTCCCC--HHHHHHHHHHHCSSG
T ss_pred HHHHHHHHHHcCCC----cCeEcHHHHHHHHHHhCCCCCC--HHHHHHHHHHhCCCC
Confidence 56888887776553 2467889998888776555677 788887777665553
No 19
>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Probab=29.58 E-value=13 Score=26.69 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=16.0
Q ss_pred EEEEcCCcccCcEEEecCCC
Q psy8121 177 KQISVGDIVVGDICQIKYGD 196 (285)
Q Consensus 177 ~~i~~~~lv~GDiv~l~~G~ 196 (285)
..|+.+++.|||+|....+.
T Consensus 67 ~~V~~~~l~pGDLvFf~~~~ 86 (148)
T d2evra2 67 QPITIAELVAGDLVFFGTSQ 86 (148)
T ss_dssp EEECGGGCCTTCEEEEECSS
T ss_pred CcccccccCcceeEEecCCC
Confidence 35788999999999987543
No 20
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}
Probab=28.53 E-value=39 Score=21.90 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=23.2
Q ss_pred CeEEEEECCEEEEEEcCC---------cccCcEEEecCCC
Q psy8121 166 HKFSVIRQGEVKQISVGD---------IVVGDICQIKYGD 196 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~---------lv~GDiv~l~~G~ 196 (285)
..++|-.+|..+.++..- ..|||-|.++.|-
T Consensus 15 ~~A~vd~~Gv~r~v~l~lv~~~~~~~e~~vGDyVLVH~G~ 54 (90)
T d2ot2a1 15 NQAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGF 54 (90)
T ss_dssp SEEEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEETTE
T ss_pred CEEEEEeCCcEEEEEEeccccccCCcccCCCCEEEEehhH
Confidence 456677778778887643 4679999999984
No 21
>d1uz5a2 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=28.30 E-value=22 Score=26.08 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=37.1
Q ss_pred cCCcccCcEEEecCCCeee--ccEEEEeeCceeEeccccCCCCCceeccC-CCCCeEeeccEeeeeeE
Q psy8121 181 VGDIVVGDICQIKYGDLLP--ADGCLIQSNDLKVDESSLTGESDHVKKGE-AFDPMVLSGTHVMEGSG 245 (285)
Q Consensus 181 ~~~lv~GDiv~l~~G~~iP--aDg~il~g~~l~vdeS~LTGEs~pv~k~~-~~~~~v~~Gt~v~~G~~ 245 (285)
...|.+|+.+++..|..+| ||++|-.-. +...+.. .-+.+.. ..+|+-..|+-+..|+.
T Consensus 86 ~~~l~~g~~v~I~TGa~lP~gaD~VI~~E~-~~~~~~~-----i~i~~~~~~g~nIr~~G~D~~~G~~ 147 (176)
T d1uz5a2 86 KFKLGKGEAAYISTGAMLPGNADAVIQFED-VERVNGE-----ILIYKPAYPGLGVMKKGIDIEKGRL 147 (176)
T ss_dssp CCBCCTTEEEEECTTCBCCBTCCEEEEGGG-EEEETTE-----EEECSCCCTTTTEECTTSSBCTTCE
T ss_pred cccccCCceEEeecccccccccceEEEEee-eeecCcE-----EEEecccccccccccccccccCCCE
Confidence 4479999999999999999 999987433 2333222 1111111 12366777777777763
No 22
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=27.53 E-value=80 Score=20.93 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=23.0
Q ss_pred EEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEe
Q psy8121 168 FSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQ 206 (285)
Q Consensus 168 ~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~ 206 (285)
+.++.+.+...+. .+.+.+..|+.+|||.+|+.
T Consensus 87 V~i~~~~~v~~~~------~~~v~l~dg~~i~~D~vi~a 119 (121)
T d1d7ya2 87 VDLRFERSVTGSV------DGVVLLDDGTRIAADMVVVG 119 (121)
T ss_dssp CEEEESCCEEEEE------TTEEEETTSCEEECSEEEEC
T ss_pred cEEEeCCEEEEEe------CCEEEECCCCEEECCEEEEe
Confidence 5555555444433 34678999999999998873
No 23
>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.73 E-value=12 Score=21.66 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=16.3
Q ss_pred cccCcEEEecCCCeeeccEEEEeeC
Q psy8121 184 IVVGDICQIKYGDLLPADGCLIQSN 208 (285)
Q Consensus 184 lv~GDiv~l~~G~~iPaDg~il~g~ 208 (285)
++|||+|- .++..|-.|..+++.
T Consensus 4 V~PGe~i~--~~~~~~G~Gty~~~~ 26 (51)
T d2ba0a2 4 VLPGDLLS--TNPRAAGYGTYVEGG 26 (51)
T ss_dssp ECTTCEEE--SCTTSBCTTEEEETT
T ss_pred EcCCcEee--cCCeeCCCCcEEECC
Confidence 46888874 456778777777665
No 24
>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.36 E-value=27 Score=22.43 Aligned_cols=25 Identities=20% Similarity=-0.023 Sum_probs=17.5
Q ss_pred EEEECCEEEEEE--cCCcccCcEEEec
Q psy8121 169 SVIRQGEVKQIS--VGDIVVGDICQIK 193 (285)
Q Consensus 169 ~V~rdg~~~~i~--~~~lv~GDiv~l~ 193 (285)
-+.|+|++..-+ ..-|.+||++.+.
T Consensus 47 aI~R~g~~i~~p~~~~~l~~gD~l~v~ 73 (94)
T d1vcta2 47 AVRRGKRWIFGPNENFKIRAGDVLIGR 73 (94)
T ss_dssp EEEETTEEEESCCTTCBCCTTCEEEEE
T ss_pred EEEECCeeecCCCCCCEECCCCEEEEE
Confidence 467999877533 4467788888764
No 25
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=26.08 E-value=23 Score=23.55 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.7
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEec--CCCeeeccEEEEeeCceeEe
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIK--YGDLLPADGCLIQSNDLKVD 213 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~--~G~~iPaDg~il~g~~l~vd 213 (285)
.+..-+||.. -..-+||++|.+. ..++--||..|++-..+..|
T Consensus 20 kKTITIRD~S-----Eshy~pG~~v~V~t~E~~~~fc~I~IlsV~pi~fd 64 (103)
T d1te7a_ 20 RKTITIRDES-----ESHFKTGDVLRVGRFEDDGYFCTIEVTATSTVTLD 64 (103)
T ss_dssp CCEEEEECGG-----GCCCCTTSEEEEEETTTEEEEEEEEEEEEEEECST
T ss_pred CceEEeccch-----hcccCCCCEEEEEEccCCCEEEEEEEEEEeeecHH
Confidence 4556678763 3478999999994 56788899999987654444
No 26
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.26 E-value=89 Score=21.05 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=23.8
Q ss_pred eEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEEe
Q psy8121 167 KFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQ 206 (285)
Q Consensus 167 ~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il~ 206 (285)
-+.++-+-....+..++= +-.|.+..|+.++||.+|..
T Consensus 97 GV~~~~~~~V~~i~~~~~--~~~v~l~~G~~i~aD~Vi~A 134 (137)
T d1m6ia2 97 GVKVMPNAIVQSVGVSSG--KLLIKLKDGRKVETDHIVAA 134 (137)
T ss_dssp TCEEECSCCEEEEEEETT--EEEEEETTSCEEEESEEEEC
T ss_pred CcEEEeCCEEEEEEecCC--EEEEEECCCCEEECCEEEEe
Confidence 355555555555543321 12577889999999998873
No 27
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.43 E-value=23 Score=18.03 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=11.1
Q ss_pred CCcccCcEEEecCCC
Q psy8121 182 GDIVVGDICQIKYGD 196 (285)
Q Consensus 182 ~~lv~GDiv~l~~G~ 196 (285)
..|||||....-.|.
T Consensus 7 n~LVPGDRFHyvNG~ 21 (33)
T d1rutx4 7 NRLVPGDRFHYINGS 21 (33)
T ss_dssp CBCCTTCEEEEETTE
T ss_pred ccccCCceeEEecCE
Confidence 368999988776654
No 28
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}
Probab=22.91 E-value=99 Score=20.39 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=25.0
Q ss_pred CeEEEEECCEEEEEEcCCcccCcEEEecCCCeeeccEEEE
Q psy8121 166 HKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLI 205 (285)
Q Consensus 166 ~~~~V~rdg~~~~i~~~~lv~GDiv~l~~G~~iPaDg~il 205 (285)
.-+.++.+-+...+..+.- .. ..+..|..+|||.+|+
T Consensus 85 ~gv~~~~~~~v~~i~~~~~--~~-~v~~dg~~i~~D~vi~ 121 (123)
T d1nhpa2 85 NNITIATGETVERYEGDGR--VQ-KVVTDKNAYDADLVVV 121 (123)
T ss_dssp TTEEEEESCCEEEEECSSB--CC-EEEESSCEEECSEEEE
T ss_pred CCeEEEeCceEEEEEcCCC--EE-EEEeCCCEEECCEEEE
Confidence 3467777777777764321 12 3378899999999886
No 29
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=20.96 E-value=56 Score=19.16 Aligned_cols=31 Identities=16% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHhhcCHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy8121 33 VNELGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSN 71 (285)
Q Consensus 33 ~~~~~~~~~l~~~l~t~~~~GLs~~~~e~~~r~~~~G~N 71 (285)
++++++.....+.| |++ ....-+++++||-+
T Consensus 30 L~~~gn~~~aA~~L------gis--r~tL~rKlkk~gi~ 60 (61)
T d1g2ha_ 30 YAEYPSTRKLAQRL------GVS--HTAIANKLKQYGIG 60 (61)
T ss_dssp HHHSCSHHHHHHHT------TSC--THHHHHHHHTTTCC
T ss_pred HHHCCCHHHHHHHH------CCC--HHHHHHHHHHhCCC
Confidence 45678888888777 666 56777899999865
No 30
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.74 E-value=32 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.4
Q ss_pred CEEEEEEcCCcccCcEEEec
Q psy8121 174 GEVKQISVGDIVVGDICQIK 193 (285)
Q Consensus 174 g~~~~i~~~~lv~GDiv~l~ 193 (285)
|....|.+.+|.+|..|.+.
T Consensus 1 g~~~~i~~~~lkkG~~i~~~ 20 (69)
T d1iz6a1 1 GDKTKVQVSKLKPGRYIIID 20 (69)
T ss_dssp CCEEEEEGGGCCTTSEEEET
T ss_pred CCcEEEEHhHccCCCEEEEC
Confidence 45678999999999988874
No 31
>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.17 E-value=27 Score=21.37 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=12.6
Q ss_pred cCCcccCcEEEecCCC
Q psy8121 181 VGDIVVGDICQIKYGD 196 (285)
Q Consensus 181 ~~~lv~GDiv~l~~G~ 196 (285)
..++.+||.|.+..|+
T Consensus 23 d~~I~~GD~V~V~~ge 38 (68)
T d2q07a1 23 DEKIRPNDVVVFHNSR 38 (68)
T ss_dssp CTTCCTTCEEEEECSS
T ss_pred CCCCCCCCEEEEEeCC
Confidence 3589999999887654
Done!