RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8121
(285 letters)
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 305 bits (783), Expect = 3e-97
Identities = 122/234 (52%), Positives = 159/234 (67%), Gaps = 5/234 (2%)
Query: 35 ELGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTL 94
+LGG + I KL T +EG+ S++ +E R +G N +P KPPK+FL +VW AL D TL
Sbjct: 41 KLGGAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTL 100
Query: 95 IILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQ 154
I+L +AA+VSL L +P + + + GWIEG+AIL+SVI+VV+VTA NDY KE Q
Sbjct: 101 ILLSVAAVVSLVLGLPEPGE----GKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQ 156
Query: 155 FRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDE 214
FR L R + K +VIR G+ +QIS+ DIVVGDI + GD++PADG I L++DE
Sbjct: 157 FRQLN-REKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDE 215
Query: 215 SSLTGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAA 268
SS+TGESD +KKG DP +LSGT V EGSG+MLVTAVGVNS G + L A
Sbjct: 216 SSITGESDPIKKGPVQDPFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRQA 269
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 140 bits (356), Expect = 1e-37
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 29/243 (11%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
E+ +L+TSP+ GLS + R +G N +P + ++ L +D +I+L
Sbjct: 30 RNELLLELFTSPTTGLSEEEV--KRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLL 87
Query: 99 IAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGL 158
+AAL+S + + A D + L ++I+ ++ V + + +
Sbjct: 88 VAALLSAFVGDWVDAGVDA---------IVILLVVVINALLG-FVQEYRAEKALEALKKM 137
Query: 159 QSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLT 218
S K V+R G+ +I ++V GDI ++ GD++PAD L++S+DL+VDES+LT
Sbjct: 138 SSP-----KAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDESALT 192
Query: 219 GESDHVKKGEAF------------DPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLG 266
GES V+K D M+ SGT V+ G K +V A G ++ G I LL
Sbjct: 193 GESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLP 252
Query: 267 AAV 269
Sbjct: 253 TKK 255
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 116 bits (292), Expect = 2e-31
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 132 AILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQ 191
IL+ V++ ++ A+ +Y + + L+ + +VIR G+ ++I ++VVGDI
Sbjct: 1 IILLLVLINALLEAYQEYRARKALKALKKLLP-PTAATVIRDGKEEEIPADELVVGDIVL 59
Query: 192 IKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTA 251
+K GD +PADG +I L+VDES+LTGES V+K V +GT V+ G K++VTA
Sbjct: 60 LKPGDRVPADGRII-EGSLEVDESALTGESLPVEKSR--GDTVFAGTVVLSGELKVIVTA 116
Query: 252 VGVNSQAGIIFTLLGAA 268
G +++ G I L+ A
Sbjct: 117 TGEDTELGKIARLVEEA 133
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 94.3 bits (235), Expect = 9e-22
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 133 ILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQI 192
IL V+V V++ E R L R+ +V+R G K+I D+V GD+ +
Sbjct: 2 ILFLVLVFVLLVVKQKLKAEDILRSLSDRLVNTRPATVLRNG-WKEIPAKDLVPGDVVLV 60
Query: 193 KYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDP--------MVLSGTHVMEGS 244
K G+ +PADG L+ VDES+LTGES+ V K + +V +GT+V G+
Sbjct: 61 KSGETVPADGVLLSG-SCFVDESNLTGESNPVLKTALKETQSGTITGDLVFAGTYVFGGT 119
Query: 245 GKMLVTAVGVNSQAGII 261
++VT G+ + G I
Sbjct: 120 LIVVVTPTGILTTVGRI 136
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 92.4 bits (230), Expect = 5e-21
Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 30/207 (14%)
Query: 53 GLSGSAADMEHRRDTFGSNTIPPK---PPKTFLTLVWEALQDVTLIILEIAALVSLGLSF 109
GL+ + A + R +G N +P K P FL W L ++E AA++++ L
Sbjct: 1 GLTSAEA--KKRLAKYGPNELPEKKVSPLLKFLGFFWNPLS----WVMEAAAIIAIAL-- 52
Query: 110 YKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFS 169
W++ + IL +++ + + L+ + + +
Sbjct: 53 ---------------ENWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKAR-- 95
Query: 170 VIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEA 229
V+R G+ ++I ++V GD+ ++K GD++PAD L + + ++VD+++LTGES V K
Sbjct: 96 VLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKK-- 153
Query: 230 FDPMVLSGTHVMEGSGKMLVTAVGVNS 256
+ SG+ V +G + +VTA G+N+
Sbjct: 154 TGDIAYSGSTVKQGEAEAVVTATGMNT 180
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 89.1 bits (221), Expect = 6e-20
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 27/209 (12%)
Query: 85 VWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVT 144
V E +D+ + IL +AA VS L++++ + +E ++E IL+ ++ IV
Sbjct: 1 VLEQFEDLLVRILLLAACVSFVLAWFE-------EGEETVTAFVEPFVILLILVANAIVG 53
Query: 145 AFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCL 204
+ + E+ L+ E EH V+R G I D+V GDI ++ GD +PAD +
Sbjct: 54 VWQERNAEKAIEALKE-YESEHA-KVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRV 111
Query: 205 IQSNDLKVDESSLTGES-------DHVKKGEAFDP----MVLSGTHVMEGSGKMLVTAVG 253
+ L+VD+S LTGES + V A + M+ SGT V+ G + +V G
Sbjct: 112 LSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTG 171
Query: 254 VNSQAGIIFTLLGAAVDEQEQE---IKKK 279
++++ G I + EQE ++KK
Sbjct: 172 MSTEIGKI----RDEMRAAEQEDTPLQKK 196
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 87.2 bits (216), Expect = 3e-19
Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
++E C KL T GL+ S+ + HRR G N + ++ LI+L
Sbjct: 9 VEETCSKLQTDLQNGLN-SSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLL 67
Query: 99 IA-ALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRG 157
IA A++S+ + DD ++I +++++VV V +Y E+
Sbjct: 68 IASAVISVFMG--------NIDD---------AVSITLAILIVVTVGFVQEYRSEKSLEA 110
Query: 158 LQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSL 217
L + + +IR+G+++ + +V GD+ + GD +PAD ++++ DL +DES+L
Sbjct: 111 LNKLVP--PECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNL 168
Query: 218 TGESDHVKKG----EAFDPMVLS--------GTHVMEGSGKMLVTAVGVNSQAGIIFTLL 265
TGE+ V K A L+ GT V G GK +V G N++ G +F ++
Sbjct: 169 TGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMM 228
Query: 266 GA 267
A
Sbjct: 229 QA 230
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 86.4 bits (214), Expect = 5e-19
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 38/245 (15%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKT-----FLTLVWEALQDVT 93
+ E+ +K T S+GLS + A RD G N + P PP T F ++
Sbjct: 22 LDELERKYGTDLSKGLSAARAAEILARD--GPNALTP-PPTTPEWVKFCRQLFGGFS--- 75
Query: 94 LIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKER 153
++L I A++ + + E+ +D L + + + VVI+T Y +E
Sbjct: 76 -MLLWIGAILCFLAYGIQASTEEEPQNDN--------LYLGVVLSAVVIITGCFSYYQEA 126
Query: 154 QFRGLQSRIEGEHK------FSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQS 207
+ S+I K VIR GE I+ +VVGD+ ++K GD +PAD +I +
Sbjct: 127 K----SSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISA 182
Query: 208 NDLKVDESSLTGESDHVKKGEAF---DPM-----VLSGTHVMEGSGKMLVTAVGVNSQAG 259
KVD SSLTGES+ + F +P+ T+ +EG+ + +V G + G
Sbjct: 183 QGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMG 242
Query: 260 IIFTL 264
I +L
Sbjct: 243 RIASL 247
>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport.
Length = 69
Score = 75.3 bits (186), Expect = 1e-17
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 37 GGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLII 96
++E+ +L T +GL+ + A E R + +G N +P K PK+ + +D +II
Sbjct: 4 LSVEEVLARLGTDLEKGLTEAEA--EERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVII 61
Query: 97 LEIAALVS 104
L IAA+VS
Sbjct: 62 LLIAAIVS 69
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 82.0 bits (202), Expect = 2e-17
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 36/230 (15%)
Query: 46 LYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSL 105
+ TS EGL+ A +HR G N + ++ + + ++L IAA +S
Sbjct: 19 IGTSIPEGLTHDEA--QHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISF 76
Query: 106 GLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGE 165
+ H WIEG I + + +++ +Y E+ L +
Sbjct: 77 AM-----------------HDWIEGGVISAIIALNILIGFIQEYKAEKTMDSL--KNLAS 117
Query: 166 HKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVK 225
VIR G+ I D+V GDIC +K GD +PAD LI++ + DE+ LTGES V
Sbjct: 118 PMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVI 177
Query: 226 K--------------GEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGII 261
K G+ + + S + V +G K + A +NS+ G I
Sbjct: 178 KDAHATFGKEEDTPIGDRIN-LAFSSSAVTKGRAKGICIATALNSEIGAI 226
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 76.1 bits (187), Expect = 2e-15
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 43/253 (16%)
Query: 40 QEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEI 99
+E + GL+ ++ R FG N + L L+ A + + IL +
Sbjct: 20 KETLLRKLGVHETGLT--NVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAM 77
Query: 100 AALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQ 159
VS +D+ A +I ++V+ + R R
Sbjct: 78 LMGVSY-------LTDDLE-------------ATVIIALMVLASGLLGFIQESRAERAAY 117
Query: 160 S-RIEGEHKFSVIRQGEVK------QISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKV 212
+ + ++ +V+R ++ + +V GD+ ++ GD++PAD +I + DL +
Sbjct: 118 ALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISARDLFI 177
Query: 213 DESSLTGESDHVKK----GEAFDPMVLS-------GTHVMEGSGKMLVTAVGVNSQAGII 261
++S+LTGES V+K A DP +L GT+V+ G + +V A G ++ G
Sbjct: 178 NQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFG-- 235
Query: 262 FTLLGAAVDEQEQ 274
+L AA + + Q
Sbjct: 236 -SLAIAATERRGQ 247
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 71.9 bits (177), Expect = 4e-14
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 93 TLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVT---AFNDY 149
TL+ +A + + S Y F++ + +++ +
Sbjct: 151 TLVA--LATIGAYAYSLYATLFPVYFEE---------------AAMLIFLFLLGRYLEAR 193
Query: 150 TKERQFRGLQS--RIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQS 207
K R R +++ + + V GE +++ V ++ VGDI ++ G+ +P DG ++
Sbjct: 194 AKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSG 253
Query: 208 NDLKVDESSLTGESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQ-AGII 261
+ VDES LTGES V+K + V +GT ++GS + VT VG ++ A II
Sbjct: 254 SSS-VDESMLTGESLPVEKKPGDE--VFAGTVNLDGSLTIRVTRVGADTTLARII 305
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
This entry represents the conserved N-terminal region
found in several classes of cation-transporting P-type
ATPases, including those that transport H+, Na+, Ca2+,
Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange
P-ATPases, this domain is found in the catalytic alpha
chain. In gastric H+/K+-ATPases, this domain undergoes
reversible sequential phosphorylation inducing
conformational changes that may be important for
regulating the function of these ATPases.
Length = 75
Score = 61.8 bits (151), Expect = 1e-12
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
++E+ ++L T +GLS A R + +G N +PP + L + + IL
Sbjct: 9 LEEVLERLQTDLEKGLSSEEA--ARRLERYGPNELPPPKKTSPLLRFLRQFHNPLIYILL 66
Query: 99 IAALVSLGL 107
AA++S L
Sbjct: 67 AAAVLSALL 75
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 67.0 bits (164), Expect = 2e-12
Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 47/255 (18%)
Query: 40 QEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEI 99
+E+ K T P EGL+ + + R+ G N +P + P + +W ++ I+L I
Sbjct: 55 EELWKTFDTHP-EGLNEAEVES--AREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTI 111
Query: 100 AALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQ 159
+S A ED+F A +I+++V I T N + +E +
Sbjct: 112 LGAISY-------ATEDLFA------------AGVIALMVA-ISTLLN-FIQEARSTKAA 150
Query: 160 SRIEG--EHKFSVIRQGEVK------QISVGDIVVGDICQIKYGDLLPADGCLIQSNDLK 211
++ + +V+R K +I + +V GDI ++ GD++PAD ++Q+ DL
Sbjct: 151 DALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLF 210
Query: 212 VDESSLTGESDHVKK----GEAF-------DPMVLSGTHVMEGSGKMLVTAVGVNSQAGI 260
V ++SLTGES V+K + D + GT+V+ G+ + +V A G N+
Sbjct: 211 VAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTW--- 267
Query: 261 IFTLLGAAVDEQEQE 275
F L V EQ+ E
Sbjct: 268 -FGQLAGRVSEQDSE 281
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 66.1 bits (162), Expect = 3e-12
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 131 LAILISVIV------VVIVTAFN------DYTKERQFRGLQSRIE-GEHKFSVIRQ-GEV 176
LA + + + +++ F + K R L + + V++ G
Sbjct: 7 LATIAAYAMGLVLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSE 66
Query: 177 KQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPMVLS 236
+++ V ++ VGDI ++ G+ +P DG +I VDES+LTGES V+K E + V +
Sbjct: 67 EEVPVEELQVGDIVIVRPGERIPVDGVVISGESE-VDESALTGESMPVEKKEGDE--VFA 123
Query: 237 GTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQEQEIKKK 279
GT +GS + VT +G +S I L+ E+ Q K
Sbjct: 124 GTINGDGSLTIRVTKLGEDSTLAQIVELV-----EEAQSSKAP 161
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 58.9 bits (143), Expect = 8e-10
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 170 VIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEA 229
V+R G +++++V ++ VGD+ +K G+ +P DG ++ VDES+LTGES V+K
Sbjct: 59 VLRGGSLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTST-VDESALTGESVPVEKAPG 117
Query: 230 FDPMVLSGTHVMEGSGKMLVTAVGVNSQ-AGII 261
+ V +G ++G ++VT + +S A I+
Sbjct: 118 DE--VFAGAINLDGVLTIVVTKLPADSTIAKIV 148
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 58.4 bits (142), Expect = 1e-09
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 174 GEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFDPM 233
GE++++ V + GDI ++ G+ +P DG +I+ +VDES +TGES V K DP
Sbjct: 100 GEIEEVPVELLQPGDIVRVLPGEKIPVDGTVIEGES-EVDESLVTGESLPVPKKVG-DP- 156
Query: 234 VLSGTHVMEGSGKMLVTAVGVNS 256
V++GT GS + TA G ++
Sbjct: 157 VIAGTVNGTGSLVVRATATGEDT 179
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 55.0 bits (133), Expect = 2e-08
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 21/103 (20%)
Query: 172 RQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKK----- 226
+ ++I + ++V GDI + GD++PAD LI+S DL + ++ LTGE+ V+K
Sbjct: 160 AEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQAVLTGEALPVEKYDTLG 219
Query: 227 --------GEAFDP--------MVLSGTHVMEGSGKMLVTAVG 253
A D + GT+V+ G+ +V A G
Sbjct: 220 AVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATG 262
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 50.4 bits (121), Expect = 6e-07
Identities = 44/185 (23%), Positives = 69/185 (37%), Gaps = 32/185 (17%)
Query: 48 TSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVW-EALQDVTLIILEIAALVSLG 106
T + D+ R+ +G N I P +FL L+ E L + + S+
Sbjct: 132 TCAGHSNGLTTGDIAQRKAKYGKNEIE-IPVPSFLELLKEEVLHP-----FYVFQVFSVI 185
Query: 107 LSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFND---YTKERQFRGLQSRIE 163
L DE + S+ +V + + Y +Q + L+ +
Sbjct: 186 LWL---LDEYYY----------------YSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH 226
Query: 164 GEHKFSVIRQGEVKQISVGDIVVGDICQIKY--GDLLPADGCLIQSNDLKVDESSLTGES 221
VIR G+ I+ ++V GDI I +P D L+ V+ES LTGES
Sbjct: 227 KPQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSG-SCIVNESMLTGES 285
Query: 222 DHVKK 226
V K
Sbjct: 286 VPVLK 290
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 49.6 bits (119), Expect = 1e-06
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 170 VIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGES 221
+R GE +++++ D+ GD+ ++ G LPADG L+ S DES+LTGES
Sbjct: 247 RLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLL-SPFASFDESALTGES 297
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 39.6 bits (93), Expect = 0.001
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 174 GEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKK--GEAFD 231
G ++ + ++ GDI ++ G+++P+DG +I+ VDES++TGES V + G F
Sbjct: 113 GSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVA-SVDESAITGESAPVIRESGGDFS 171
Query: 232 PMVLSGTHVMEGSGKMLVTA 251
V GT V+ K+ +TA
Sbjct: 172 S-VTGGTRVLSDWLKIRITA 190
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 39.5 bits (92), Expect = 0.002
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 174 GEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEAFD-P 232
G + ++ + GDI ++ GD++P DG +I+ VDES++TGES V K D
Sbjct: 114 GAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEGV-ASVDESAITGESAPVIKESGGDFA 172
Query: 233 MVLSGTHVMEGSGKMLVTA 251
V GT ++ + TA
Sbjct: 173 SVTGGTRILSDWLVVECTA 191
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 38.1 bits (89), Expect = 0.005
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 20/101 (19%)
Query: 134 LISVIVVVIVT----AFNDYTKERQFRGLQSR----IEGEHKFSVIRQGEVKQISVGDIV 185
++ + V+IVT A D + R+ + + +R +EG +F +I D+
Sbjct: 54 IVPLAFVLIVTAIKEAIEDIRRRRRDKEVNNRLTEVLEGHGQF--------VEIPWKDLR 105
Query: 186 VGDICQIKYGDLLPADGCLIQSNDLK----VDESSLTGESD 222
VGDI ++K + +PAD L+ S++ V+ ++L GE++
Sbjct: 106 VGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDGETN 146
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 37.1 bits (87), Expect = 0.010
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 7/51 (13%)
Query: 174 GEVKQISVGDIVVGDICQIKYGDLLPADGCLIQ---SNDLKVDESSLTGES 221
G +++ ++ GDI ++ G+++PADG +I+ S VDES++TGES
Sbjct: 113 GAAEEVPATELRKGDIVLVEAGEIIPADGEVIEGVAS----VDESAITGES 159
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 37.0 bits (86), Expect = 0.010
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 170 VIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEA 229
V +GE K + + D+ G + ++ GD +P DG + Q + +DE+ LTGE +KGE
Sbjct: 328 VTDEGE-KSVPLADVQPGMLLRLTTGDRVPVDGEITQG-EAWLDEAMLTGEPIPQQKGEG 385
Query: 230 FDPMVLSGTHVMEGSGKMLVTAVGVNSQ 257
V +GT V +GS +L A V S
Sbjct: 386 --DSVHAGTVVQDGS--VLFRASAVGSH 409
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 36.2 bits (83), Expect = 0.018
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 151 KERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDL 210
++ Q RI+ + + +I ++K+ G I ++ G+ +P DG +I L
Sbjct: 98 RQTQTEMKARRIKQDGSYEMIDASDLKK--------GHIVRVATGEQIPNDGKVI--KGL 147
Query: 211 -KVDESSLTGESDHVKKGEAFD-PMVLSGTHV 240
VDES++TGES V K D V+ GT V
Sbjct: 148 ATVDESAITGESAPVIKESGGDFDNVIGGTSV 179
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 35.3 bits (81), Expect = 0.037
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 132 AILISVIVVVIVTAFND-YTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDIC 190
A ++ + V++VTA D Y R+ R RIE V+ + ++ DI VG+I
Sbjct: 138 ASILPLAFVLLVTAVKDAYEDWRRHR--SDRIENNRLAWVLVDDQFQEKKWKDIRVGEII 195
Query: 191 QIKYGDLLPADGCLIQSND----LKVDESSLTGESD 222
+I+ D LP D L+ ++D V +L GES+
Sbjct: 196 KIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESN 231
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 34.1 bits (78), Expect = 0.083
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 61 MEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDD 120
ME +D G P + +W+ + + L++L A++V +GLS P + + +
Sbjct: 444 MEDLKDMLGFR------PSRYYYYMWKYISPLCLLVLLTASIVQMGLS---PPGYNAWIE 494
Query: 121 DEAKHGWIE----GLAILISVIVVVIV 143
DEA ++ G+A+ IS+IVV I+
Sbjct: 495 DEAAEEFLSYPTWGMAVCISLIVVAIL 521
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 33.4 bits (76), Expect = 0.14
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 61 MEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDD 120
ME +D G P + +W+ + + L+ L +A++V +GLS P + + +
Sbjct: 494 MEDLKDMLGFT------PNRYYYYMWKYISPLVLLSLLVASVVQMGLS---PPGYNAWIE 544
Query: 121 DEAKHGWIE----GLAILISVIVVVIV 143
D+A ++ GL + IS++V+ I+
Sbjct: 545 DKATEEFLSYPTWGLVVCISLVVLAIL 571
>gnl|CDD|173813 cd07488, Peptidases_S8_2, Peptidase S8 family domain,
uncharacterized subfamily 2. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 247
Score = 29.4 bits (66), Expect = 2.0
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 120 DDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQI 179
++ K G I + + IVV D +R F S E I +++
Sbjct: 135 KEKEKFGGISIPTLAYNSIVV----GSTDRNGDRFFASDVSNAGSE-----INSYGRRKV 185
Query: 180 SV 181
+
Sbjct: 186 LI 187
>gnl|CDD|235448 PRK05414, PRK05414, urocanate hydratase; Provisional.
Length = 556
Score = 29.3 bits (67), Expect = 2.6
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 34/83 (40%)
Query: 116 DVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKER-QFRGLQSRI-----EGEHKFS 169
++F DDE H WI D +ER F+GL +RI +
Sbjct: 382 ELFPDDEHLHRWI-------------------DMARERILFQGLPARICWLGYGERARLG 422
Query: 170 V-----IRQGEVKQISVGDIVVG 187
+ +R GE+K IV+G
Sbjct: 423 LAFNEMVRNGELK----APIVIG 441
>gnl|CDD|216344 pfam01175, Urocanase, Urocanase.
Length = 545
Score = 29.1 bits (66), Expect = 3.0
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 34/83 (40%)
Query: 116 DVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKER-QFRGLQSRI-----EGEHKFS 169
++F D+ H WI +ER F+GL +RI +
Sbjct: 371 ELFPDNRHLHRWI-------------------RMARERVLFQGLPARICWLGYGERARIG 411
Query: 170 V-----IRQGEVKQISVGDIVVG 187
+ + GE+K IV+G
Sbjct: 412 LAFNEMVASGELK----APIVIG 430
>gnl|CDD|205807 pfam13630, SdpI, SdpI/YhfL protein family. This family of proteins
includes the SdpI and YhfL proteins from B. subtilis.
The SdpI protein is a multipass integral membrane
protein that protects toxin-producing cells from being
killed. Killing is mediated by the exported toxic
protein SdpC an extracellular protein that induces the
synthesis of an immunity protein.
Length = 72
Score = 26.8 bits (60), Expect = 3.9
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 24/83 (28%)
Query: 74 PPKPP------KTFLTL----VWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEA 123
P K P +T TL W + I L+ L L
Sbjct: 1 PKKKPNSFVGIRTPWTLKNEENWRKAHRFAGKLFIIGGLILLLLGLLI------------ 48
Query: 124 KHGWIEGLAILISVIVVVIVTAF 146
I L +L+ ++V VI+
Sbjct: 49 --LDILFLILLLLILVAVIIPII 69
>gnl|CDD|220508 pfam09992, DUF2233, Predicted periplasmic protein (DUF2233). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 166
Score = 28.0 bits (63), Expect = 3.9
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 1 MATVDGRPAQYGVTLRQLRELMEHRG 26
+ VDGR Q G+TL +L +L++ G
Sbjct: 104 LVVVDGR--QIGLTLDELADLLKRLG 127
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 28.7 bits (64), Expect = 4.2
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 78 PKTFLTLVWEALQDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIE----GLAI 133
P +F W+ + + + +L A+++ LG+S P + +EA ++ +A+
Sbjct: 505 PYSFYFYTWKYVSPICMAVLMTASIIQLGVS---PPGYSAWIREEAAERFLFYPTWAMAL 561
Query: 134 LISVIVVVIV 143
LI++I++ +
Sbjct: 562 LITLIILASL 571
>gnl|CDD|219750 pfam08217, DUF1712, Fungal domain of unknown function (DUF1712).
The function of this family of proteins is unknown.
Length = 466
Score = 28.5 bits (64), Expect = 4.3
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 15/102 (14%)
Query: 23 EHRGREGIAKVNELGGIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPP------- 75
E GI L ++ + SE A D F + +
Sbjct: 226 EVGSWTGIRNSPSLFMNYTPSGRVRSGSSENGDSKAKLDGK--DGFLISPLAKVFLPESY 283
Query: 76 ------KPPKTFLTLVWEALQDVTLIILEIAALVSLGLSFYK 111
K + L + A +TL + + A + K
Sbjct: 284 LPFNTDDEQKYYNLLFYYAKDVLTLCLFDPAFDKINEQDYLK 325
>gnl|CDD|223888 COG0818, DgkA, Diacylglycerol kinase [Cell envelope biogenesis,
outer membrane].
Length = 123
Score = 26.8 bits (60), Expect = 7.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 12/49 (24%)
Query: 99 IAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFN 147
+AALV+L L+F+ IE L +++S+ +V+IV N
Sbjct: 37 LAALVALVLAFFLGVS------------AIEWLLLILSIFLVLIVELLN 73
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 28.0 bits (63), Expect = 7.3
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 19/84 (22%)
Query: 87 EALQDVTLIIL--EIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVT 144
L TL L I AL++LGL FY + W L + +V + VT
Sbjct: 247 RILSGSTLTTLLSGIFALLNLGLMFY--------------YSWKLALVAVALALVAIAVT 292
Query: 145 AFNDY---TKERQFRGLQSRIEGE 165
KER+ L +I G
Sbjct: 293 LVLGLLQVRKERRLLELSGKISGL 316
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.387
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,911,772
Number of extensions: 1466191
Number of successful extensions: 1599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1556
Number of HSP's successfully gapped: 54
Length of query: 285
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 189
Effective length of database: 6,679,618
Effective search space: 1262447802
Effective search space used: 1262447802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)