RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8121
(285 letters)
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 167 bits (425), Expect = 6e-47
Identities = 66/258 (25%), Positives = 106/258 (41%), Gaps = 33/258 (12%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
+ E+ K T + GL+ + A + G N++ P P L I+L
Sbjct: 53 LDELHNKYGTDLTRGLTNARA--KEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLW 110
Query: 99 IAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQ---- 154
I A++ + A ED +D G+ + VVIVT Y +E +
Sbjct: 111 IGAILCFLAYGIQAATEDEPANDN----LYLGVVLST----VVIVTGCFSYYQEAKSSRI 162
Query: 155 ---FRGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLK 211
F+ + + VIR GE I+ +V GD+ ++K GD +PAD +I ++ K
Sbjct: 163 MDSFKNMVP-----QQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCK 217
Query: 212 VDESSLTGESDHVKKGEAFDP--------MVLSGTHVMEGSGKMLVTAVGVNSQAGIIFT 263
VD SSLTGES+ + F + T+ +EG+ + +V G + G I T
Sbjct: 218 VDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIAT 277
Query: 264 LLGAAVDEQ---EQEIKK 278
L + EI+
Sbjct: 278 LASGLEVGRTPIAIEIEH 295
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 164 bits (417), Expect = 5e-46
Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 22/245 (8%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
+ E+ +K TS ++GLS S A G N + P L ++
Sbjct: 58 VAELEQKYQTSATKGLSASLA--AELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMW 115
Query: 99 IAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQ---F 155
+AA + L + ++ D+ DD LA++ V+V + ++ F
Sbjct: 116 VAAAICLIAFAIQASEGDLTTDDN----LYLALALIAVVVVTGCFGYYQEFKSTNIIASF 171
Query: 156 RGLQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDES 215
+ L + +VIR G+ QI+ +VVGD+ ++K GD +PAD ++Q+ KVD S
Sbjct: 172 KNLVP-----QQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNS 226
Query: 216 SLTGESDHVKKGEAFDP--------MVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGA 267
SLTGES+ + + T +EG+ + LV G + G I +L
Sbjct: 227 SLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASG 286
Query: 268 AVDEQ 272
+E+
Sbjct: 287 VENEK 291
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 148 bits (375), Expect = 2e-40
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 18/230 (7%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
I+E+ ++L S EGL+ E R FG N + K L + + ++E
Sbjct: 19 IEEVFQQLKCSR-EGLTTQEG--EDRIQIFGPNKLEEKKESKLLKF-LGFMWNPLSWVME 74
Query: 99 IAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGL 158
+AA++++ L+ D W + + I+ +++ ++ + L
Sbjct: 75 MAAIMAIALANGDGRPPD----------WQDFVGIICLLVINSTISFIEENNAGNAAAAL 124
Query: 159 QSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLT 218
+ + + K V+R G+ + +V GDI IK GD++PAD L++ + LKVD+S+LT
Sbjct: 125 MAGLAPKTK--VLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALT 182
Query: 219 GESDHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAA 268
GES V K V SG+ +G + +V A GV++ G L+ +
Sbjct: 183 GESLPVTKHP--GQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDST 230
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 147 bits (373), Expect = 5e-40
Identities = 68/249 (27%), Positives = 113/249 (45%), Gaps = 26/249 (10%)
Query: 39 IQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILE 98
+E S + GL+ + + +G N +P + K+ LV E +D+ + IL
Sbjct: 10 TEECLAYFGVSETTGLTPDQV--KRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILL 67
Query: 99 IAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGL 158
+AA +S L++++ +E + ++E IL+ +I IV + + E L
Sbjct: 68 LAACISFVLAWFEEGEETITA-------FVEPFVILLILIANAIVGVWQERNAENAIEAL 120
Query: 159 QSRIEGEHKFSVIRQGE--VKQISVGDIVVGDICQIKYGDLLPADG--CLIQSNDLKVDE 214
+ K V R V++I DIV GDI ++ GD +PAD I+S L+VD+
Sbjct: 121 KEYEPEMGK--VYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQ 178
Query: 215 SSLTGESDHVKKGEAFDP-----------MVLSGTHVMEGSGKMLVTAVGVNSQAGIIFT 263
S LTGES V K P M+ SGT++ G +V GV+++ G I
Sbjct: 179 SILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRD 238
Query: 264 LLGAAVDEQ 272
+ A ++
Sbjct: 239 QMAATEQDK 247
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 138 bits (350), Expect = 5e-37
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 46 LYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSL 105
L T GL+ RR +G N + + FL ++E AA+++
Sbjct: 80 LQTDTRVGLTSEEV--VQRRRKYGLNQMKEEKENHFLKF-LGFFVGPIQFVMEGAAVLAA 136
Query: 106 GLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIEGE 165
GL W++ I +++ +V ++ L+ +
Sbjct: 137 GL-----------------EDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLA-- 177
Query: 166 HKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSND-LKVDESSLTGESDHV 224
K V+R G +K+I ++V GDI Q++ G ++PADG ++ + L+VD+S+LTGES V
Sbjct: 178 LKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAV 237
Query: 225 KKGEAFDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLLGAAVDEQ 272
K + V + + V G +++TA G N+ G L+ AA
Sbjct: 238 DKHK--GDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGS 283
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 60.2 bits (147), Expect = 2e-10
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 170 VIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLI--QSNDLKVDESSLTGESDHVKKG 227
VIR G+ + V ++ VGDI ++ G+ +P DG ++ +S VDES ++GE V K
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY---VDESMISGEPVPVLKS 271
Query: 228 EAFDPMVLSGTHVMEGSGKMLVTAVGVNSQ-AGII 261
+ D V T G K+ T VG + A I+
Sbjct: 272 KG-DE-VFGATINNTGVLKIRATRVGGETLLAQIV 304
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 58.7 bits (143), Expect = 6e-10
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 170 VIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLI--QSNDLKVDESSLTGESDHVKKG 227
+ G +++S+ ++ VGD+ +++ G+ +P DG + +S VDES +TGE V K
Sbjct: 230 IKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF---VDESMVTGEPIPVAKE 286
Query: 228 EAFDPMVLSGTHVMEGSGKMLVTAVG 253
V+ T GS M VG
Sbjct: 287 A--SAKVIGATINQTGSFVMKALHVG 310
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB,
actuator, transport protein; 1.65A {Archaeoglobus
fulgidus} PDB: 2voy_F
Length = 113
Score = 54.4 bits (132), Expect = 8e-10
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 170 VIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGEA 229
VIR G+ + V ++ VGDI ++ G+ +P DG +++ VDES ++GE V K +
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSK- 73
Query: 230 FDPMVLSGTHVMEGSGKMLVTAVG 253
V T G K+ T VG
Sbjct: 74 -GDEVFGATINNTGVLKIRATRVG 96
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 57.5 bits (140), Expect = 1e-09
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 170 VIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLI--QSNDLKVDESSLTGESDHVKKG 227
VIR G+ + V ++ VGDI ++ G+ +P DG ++ +S VDES ++GE V K
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY---VDESMISGEPVPVLKS 193
Query: 228 EAFDPMVLSGTHVMEGSGKMLVTAVG 253
+ V T G K+ T VG
Sbjct: 194 K--GDEVFGATINNTGVLKIRATRVG 217
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative
splicing, ATP-binding, cell membrane, cytoplasm, disease
mutation; NMR {Homo sapiens}
Length = 124
Score = 45.6 bits (109), Expect = 1e-06
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 170 VIRQGEV------KQISVGDIVVGDICQIKYGDLLPADGCLI--QSNDLKVDESSLTGES 221
++ +Q+ V + GDI ++ G P DG +I S VDES +TGE+
Sbjct: 22 IVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM---VDESLITGEA 78
Query: 222 DHVKKGEAFDPMVLSGTHVMEGSGKMLVTAVG 253
V K V++G+ GS + T VG
Sbjct: 79 MPVAKKP--GSTVIAGSINQNGSLLICATHVG 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 6e-05
Identities = 59/346 (17%), Positives = 100/346 (28%), Gaps = 145/346 (41%)
Query: 9 AQYGVTLRQL----RELMEHRGREGIAKVNELGGIQEICKKLYTSPSEGLSGSAADMEHR 64
A Y VT + L EL + L G T S+GL + A
Sbjct: 247 AHYVVTAKLLGFTPGELRSY-----------LKGA--------TGHSQGLVTAVA----- 282
Query: 65 RDTFGSNTIPPKPPKTFLTLVWEALQDVTLIILEIAALVSLGL----SFYKPADEDVFDD 120
+++ WE+ + + L +G+ ++ + +
Sbjct: 283 --IAETDS-------------WESFFVSVRKAITV--LFFIGVRCYEAYPNTSLPPSILE 325
Query: 121 DEAKHGWIEG-----LAI--LISVIVVVIVTAFNDYTKE------------RQF------ 155
D ++ EG L+I L V V N + +
Sbjct: 326 DSLENN--EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 156 ---RGL--------------QSRIE-------GEHKF--------SVIRQGEVKQISVGD 183
GL QSRI ++F S + I D
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI-NKD 442
Query: 184 IVVGDICQIKYGDL-LP----ADGCLIQSNDLKVDESSLTGE------SDHVK-----KG 227
+V ++ D+ +P DG +DL+V S++ VK +
Sbjct: 443 LVKNNV-SFNAKDIQIPVYDTFDG-----SDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 228 EA-----FDPMVLSG----TH-VMEGSGKMLVTA----VGVNSQAG 259
+A F P SG TH +G+G ++ A + + G
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 41.6 bits (97), Expect = 3e-04
Identities = 45/220 (20%), Positives = 66/220 (30%), Gaps = 80/220 (36%)
Query: 12 GVTLRQLRE----LMEHRGREGIAKVNEL-GGIQEICKKL-YTSPSEGLSGSAADMEHRR 65
G +++RE ++ +G K ++ I E + S LS
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS---------- 1727
Query: 66 DTFGSNTIPPKPPKTFLTLV----WEALQDVTLIIL----------EIAALVSLG--LSF 109
T T P LTL+ +E L+ LI E AAL SL +S
Sbjct: 1728 AT--QFTQPA------LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 110 YKPADED----VF----------DDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQF 155
E VF DE +AI + ++E
Sbjct: 1780 -----ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF-------SQE--- 1824
Query: 156 RGLQSRIEGEHKFSVIRQGEVKQI----SVGDIVV--GDI 189
LQ +E K R G + +I V GD+
Sbjct: 1825 -ALQYVVERVGK----RTGWLVEIVNYNVENQQYVAAGDL 1859
Score = 40.4 bits (94), Expect = 6e-04
Identities = 38/223 (17%), Positives = 68/223 (30%), Gaps = 67/223 (30%)
Query: 106 GLSFYK--PADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRGLQSRIE 163
G+ YK A +DV++ A + + + I IV+ N F G + +
Sbjct: 1632 GMDLYKTSKAAQDVWN--RADNHFKDTYGFSILDIVIN-----NPVNLTIHFGGEKGKRI 1684
Query: 164 GEH----KFSVIRQGEVKQISVGDIVVGDICQIKYG---DLL-------PADGCL----- 204
E+ F I G++K + + + LL PA L
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA---LTLMEK 1741
Query: 205 -----IQSNDLKVDES-----SLTGE-------------SDHVK----KGEAFDPMVLSG 237
++S L ++ SL GE V+ +G V
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSL-GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 238 THVMEGSGKMLVTAVGVN-SQAGIIFTLLGAAVDEQEQEIKKK 279
G M + +N + F+ A+ + + K+
Sbjct: 1801 ELGRSNYG-M----IAINPGRVAASFSQ--EALQYVVERVGKR 1836
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.037
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 45/171 (26%)
Query: 118 FDDDEAKHGWIEGLAILISVIVVVIVTAFN-----DYTKE----RQFR---GLQSRIEGE 165
F+ E ++ + + ++SV V F+ D K + + + G
Sbjct: 9 FETGEHQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 166 HK-FSVIRQGEVKQISVGDIVVGDICQIKYGDL------------LPADGCLIQSNDLKV 212
+ F + KQ + V ++ +I Y L + + Q + L
Sbjct: 65 LRLFWTLLS---KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 213 DESSLTGESDHVKKGEAF----------DPMVLSGTHVMEGSGK-MLVTAV 252
D +V + + + P + GSGK + V
Sbjct: 122 DNQVFA--KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent
proteolytic, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 190
Score = 27.9 bits (62), Expect = 2.8
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 9/39 (23%)
Query: 184 IVVGDICQIKYGD---------LLPADGCLIQSNDLKVD 213
+ GD+ I Y + P I D+ VD
Sbjct: 149 LTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVD 187
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Length = 185
Score = 27.0 bits (59), Expect = 5.2
Identities = 8/68 (11%), Positives = 20/68 (29%)
Query: 165 EHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLIQSNDLKVDESSLTGESDHV 224
+H V G + ++ GD + +L+ + + S + +
Sbjct: 92 DHPVLVYENGRFIEKRAFEVKEGDKVLVSELELVEQSSSSQDNPKNENLGSPEHDQLLEI 151
Query: 225 KKGEAFDP 232
K +
Sbjct: 152 KNIKYVRA 159
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR;
1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A*
3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A
3lgt_A 2r3u_A
Length = 237
Score = 27.2 bits (61), Expect = 5.4
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 161 RIEGEHKFSVIRQGEVKQISVGDIVV 186
+I I + +GD+V+
Sbjct: 106 KINATGGLPTIPINARRVPHIGDVVL 131
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 27.3 bits (60), Expect = 5.6
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 128 IEGLAILISVIVVVIVTA--FNDYTKERQFRGLQSRIEGEHKFSVIRQGEVKQISVGDIV 185
I + V +V A + + + I+G + +V + + DI
Sbjct: 94 ITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDIT 153
Query: 186 V 186
+
Sbjct: 154 I 154
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics,
rohopseudom palustris, PSI-2, protein structure
initiative; 1.20A {Rhodopseudomonas palustris}
Length = 139
Score = 26.5 bits (59), Expect = 6.7
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 73 IPPKPPKTFLTLVWEALQDVTLI-ILEIAALVSLGLSFYKPADE----DVFDDDE-AKHG 126
+P + ++ EA + + + AL G A + D+ D E + G
Sbjct: 2 MPQTITRGIKAMLDEANSSIETLTTADAIALHKSG------ASDVVIVDIRDPREIERDG 55
Query: 127 WIEGLAILIS 136
I G + +
Sbjct: 56 KIPG-SFSCT 64
>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid
transferase; HET: NAD; 2.15A {Homo sapiens} SCOP:
c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
Length = 369
Score = 27.1 bits (59), Expect = 7.0
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 235 LSGTHVMEGS--GKMLVTA--VGVNSQAGIIFTLLGAAVDEQEQEIKKKRK 281
SG E GK+ V A V V + A ++F LL A Q+ + K
Sbjct: 316 DSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHEK 366
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 26.8 bits (60), Expect = 9.3
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 161 RIEGEHKFSVIRQGEVKQISVGDIVV 186
I+ I + +GD+V+
Sbjct: 95 IIKATGGLPTIPINARRVPHIGDVVL 120
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 26.7 bits (58), Expect = 9.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 184 IVVGDICQIKYGDLLPADGCLIQSNDLKVDE 214
V GD QI Y + + L+VDE
Sbjct: 264 YVYGDTQQIPYINRVTGFPYPAHFAKLEVDE 294
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.387
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,513,792
Number of extensions: 284574
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 24
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)