RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8121
         (285 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 93.2 bits (231), Expect = 4e-22
 Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 38  GIQEICKKLYTSPSEGLSGSAADMEHRRDTFGSNTIPPKPPKTFLTLVWEALQDVTLIIL 97
             +E       S + GL+      +   + +G N +P +  K+   LV E  +D+ + IL
Sbjct: 8   STEECLAYFGVSETTGLTPDQV--KRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRIL 65

Query: 98  EIAALVSLGLSFYKPADEDVFDDDEAKHGWIEGLAILISVIVVVIVTAFNDYTKERQFRG 157
            +AA +S  L++++  +E +         ++E   IL+ +I   IV  + +   E     
Sbjct: 66  LLAACISFVLAWFEEGEETITA-------FVEPFVILLILIANAIVGVWQERNAENAIEA 118

Query: 158 LQSRIEGEHKFSVIRQGEVKQISVGDIVVGDICQIKYGDLLPADGCLI 205
           L+       +               D         ++G+ L     LI
Sbjct: 119 LKEYEPAATE--------------QDKTPLQQKLDEFGEQLSKVISLI 152


>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A
           {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 115

 Score = 70.5 bits (172), Expect = 4e-16
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 15/111 (13%)

Query: 170 VIRQGE--VKQISVGDIVVGDICQIKYGDLLPADGCLI--QSNDLKVDESSLTGESDHVK 225
           V R     V++I   DIV GDI ++  GD +PAD  ++  +S  L+VD+S LTGES  V 
Sbjct: 5   VYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVI 64

Query: 226 KGEA-----------FDPMVLSGTHVMEGSGKMLVTAVGVNSQAGIIFTLL 265
           K                 M+ SGT++  G    +V   GV+++ G I   +
Sbjct: 65  KHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 115


>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 164

 Score = 31.6 bits (71), Expect = 0.057
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 110 YKPADEDVFDDDEAKHGWIEGLAILI-----SVIVVVIVTA--FNDYTKERQFRGLQSRI 162
             P  +      EA       L         S + +VI +      +  E +    +  +
Sbjct: 67  RVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVK--AAKEAL 124

Query: 163 EGEHKFSVIRQGEVKQISVGDIVV 186
           E +       +GEV+Q ++  +++
Sbjct: 125 ENKVLTVTGPEGEVRQFNITRLIM 148


>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 85

 Score = 26.1 bits (57), Expect = 1.9
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 8/55 (14%)

Query: 10 QYGVTLRQLRELMEHRGREGIAKVNELGGIQEICKKLYTSPSEGLSGSAADMEHR 64
          QY   +++++E  E   R  +          ++   L  S     S    D+E  
Sbjct: 2  QYYRAIKKIKEAAEASNRAYLT-------SSKLADMLGISQQ-SASRIIIDLEKN 48


>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 361

 Score = 26.4 bits (58), Expect = 4.2
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 235 LSGTHVMEGS--GKMLVTA--VGVNSQAGIIFTLLGAAVDEQEQEIKKKRK 281
            SG    E    GK+ V A  V V + A ++F LL A    Q+ +     K
Sbjct: 308 DSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHEK 358


>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
           {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
          Length = 690

 Score = 25.7 bits (56), Expect = 7.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 90  QDVTLIILEIAALVSLGLSFYKPADEDVFDDDEAKHGWIE 129
            D   I   I   V   +  Y   D+DV +D E +H W E
Sbjct: 463 ADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKE 502


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,057,907
Number of extensions: 49066
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 6
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)