BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8124
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine
And Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In
Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open
Conformation In Complex With Fab
Length = 519
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open
Conformation In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open
Conformation In Complex With Fab
Length = 519
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium
And L- Tryptophan
Length = 519
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium
And L- Tryptophan
Length = 519
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 2 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 38
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 37
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 37
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And
Sodium
Length = 517
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 37
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And
Sodium
Length = 508
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 37
>pdb|3JWI|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Cthen1-Cn
pdb|3JWI|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Cthen1-Cn
Length = 207
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 31 TIVITPNQPSDTNSNN--EGNGRATENRAEWSNK 62
IV TPN+ + + N EGN R ++R EW+ K
Sbjct: 134 VIVSTPNKEYNFHYQNLFEGNLRHRDHRFEWTRK 167
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 51 RATENRAEWSNKMQFMLSIIGYSVGLG-NIWRFPYLCQQNGGGRCLARLCV 100
R+ R ++ +Q + S+ G SV ++ FP +C GG LA+ C+
Sbjct: 148 RSEGERLQFMQALQEVWSVNGRSVLTAFDLSVFPLMCDLGGGAGALAKECM 198
>pdb|3JWG|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Cthen1-C
Length = 219
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 31 TIVITPNQPSDTNSNN--EGNGRATENRAEWSNK 62
IV TPN+ + + N EGN R ++R EW+ K
Sbjct: 136 VIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRK 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,432,334
Number of Sequences: 62578
Number of extensions: 129442
Number of successful extensions: 292
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 25
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)