Query psy8124
Match_columns 106
No_of_seqs 182 out of 1332
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 19:13:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 99.9 1.3E-23 4.5E-28 177.0 -0.3 51 55-105 4-54 (519)
2 3u85_B Histone-lysine N-methyl 34.0 11 0.00036 19.2 0.3 10 79-88 2-11 (21)
3 2ls3_A High affinity copper up 29.5 17 0.00057 19.5 0.0 13 93-105 12-24 (29)
4 2lif_A Core protein P21; signa 21.1 30 0.001 18.5 0.0 14 91-105 3-16 (27)
5 2ls2_A High affinity copper up 11.5 76 0.0026 16.4 0.0 11 61-71 3-13 (26)
6 3hx6_A Type 4 fimbrial biogene 7.7 1.1E+02 0.0038 26.2 0.7 9 76-84 274-282 (570)
7 2v2f_A Penicillin binding prot 6.7 1.5E+02 0.0051 14.4 0.6 14 9-22 10-23 (26)
8 3epu_A STM2138 virulence chape 6.5 3E+02 0.01 19.8 2.4 20 60-79 2-21 (144)
9 3g1j_A Integron cassette prote 6.4 80 0.0027 21.3 -0.7 13 71-83 31-43 (93)
10 3s82_A S-adenosylmethionine sy 5.9 1.3E+02 0.0046 25.0 0.2 8 87-94 280-287 (407)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=99.86 E-value=1.3e-23 Score=177.02 Aligned_cols=51 Identities=33% Similarity=0.705 Sum_probs=48.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCceeecceeeeecCCeeehHHHHHHHHhc
Q psy8124 55 NRAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGGRCLARLCVYSCLH 105 (106)
Q Consensus 55 ~R~~W~sk~~fiLa~iG~aVGlGNiWRFPyl~~~nGGgaFLIpYli~L~l~ 105 (106)
+|++|+||++|||||+|+||||||+|||||+|++||||||+|||+++++++
T Consensus 4 ~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~ 54 (519)
T 2a65_A 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLV 54 (519)
T ss_dssp -CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHT
T ss_pred ccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999875
No 2
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=34.03 E-value=11 Score=19.21 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=7.1
Q ss_pred eeecceeeee
Q psy8124 79 IWRFPYLCQQ 88 (106)
Q Consensus 79 iWRFPyl~~~ 88 (106)
-||||-.-..
T Consensus 2 rwrfparpg~ 11 (21)
T 3u85_B 2 RWRFPARPGT 11 (26)
T ss_pred ccccccCCCc
Confidence 4999976543
No 3
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=29.48 E-value=17 Score=19.51 Aligned_cols=13 Identities=0% Similarity=0.018 Sum_probs=9.9
Q ss_pred eehHHHHHHHHhc
Q psy8124 93 RCLARLCVYSCLH 105 (106)
Q Consensus 93 aFLIpYli~L~l~ 105 (106)
.+.+.|++||+++
T Consensus 12 q~~~~Y~LML~~M 24 (29)
T 2ls3_A 12 QVVISYFLMLIFM 24 (29)
Confidence 4678888888765
No 4
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=21.14 E-value=30 Score=18.50 Aligned_cols=14 Identities=7% Similarity=-0.237 Sum_probs=6.7
Q ss_pred CeeehHHHHHHHHhc
Q psy8124 91 GGRCLARLCVYSCLH 105 (106)
Q Consensus 91 GgaFLIpYli~L~l~ 105 (106)
|+.|-| |++.|+.|
T Consensus 3 gcsfsi-FlLaLlsc 16 (27)
T 2lif_A 3 GFPFSI-FLLALLSC 16 (27)
Confidence 445554 44444443
No 5
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=11.49 E-value=76 Score=16.39 Aligned_cols=11 Identities=0% Similarity=0.018 Sum_probs=6.9
Q ss_pred chHHHHHHHHH
Q psy8124 61 NKMQFMLSIIG 71 (106)
Q Consensus 61 sk~~fiLa~iG 71 (106)
+..+|++||++
T Consensus 3 s~~~~v~Sci~ 13 (26)
T 2ls2_A 3 TAGEMAGAFVA 13 (26)
Confidence 44567777765
No 6
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=7.71 E-value=1.1e+02 Score=26.24 Aligned_cols=9 Identities=56% Similarity=1.361 Sum_probs=7.3
Q ss_pred CCceeecce
Q psy8124 76 LGNIWRFPY 84 (106)
Q Consensus 76 lGNiWRFPy 84 (106)
.||||||-.
T Consensus 274 ~GnlWRfDl 282 (570)
T 3hx6_A 274 QGNLWRFDL 282 (570)
T ss_dssp TSEEEEEEC
T ss_pred CCcEEEEEc
Confidence 499999954
No 7
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=6.70 E-value=1.5e+02 Score=14.37 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=9.4
Q ss_pred CCCCCcccccCccc
Q psy8124 9 KNKNGHELAPLNAR 22 (106)
Q Consensus 9 ~~~~~~~~a~~~~~ 22 (106)
-.+||..++.|..+
T Consensus 10 YD~~g~~i~~lg~e 23 (26)
T 2v2f_A 10 YDNKNQLIADLGSE 23 (26)
T ss_pred EeCCCCEeeecccc
Confidence 35778888777544
No 8
>3epu_A STM2138 virulence chaperone; TYPEIII secretion system, SRCA (SSRB-regulated chaperone A); 2.50A {Salmonella typhimurium} SCOP: d.198.1.0
Probab=6.52 E-value=3e+02 Score=19.78 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHhcCCCce
Q psy8124 60 SNKMQFMLSIIGYSVGLGNI 79 (106)
Q Consensus 60 ~sk~~fiLa~iG~aVGlGNi 79 (106)
+||.+-+|+-.|..+|+.++
T Consensus 2 ~~~ae~LL~~fgeklGLpsL 21 (144)
T 3epu_A 2 YSRADRLLRQFSLKLNTDSI 21 (144)
T ss_dssp CCHHHHHHHHHHHHTTCSCC
T ss_pred ccHHHHHHHHHHHHcCCCce
Confidence 57899999999999999865
No 9
>3g1j_A Integron cassette protein; novel, oyster POND, woodshole, USA, structural genomics, unknown function PSI-2, protein structure initiative; 1.70A {Vibrio cholerae}
Probab=6.38 E-value=80 Score=21.26 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=10.4
Q ss_pred HHhcCCCceeecc
Q psy8124 71 GYSVGLGNIWRFP 83 (106)
Q Consensus 71 G~aVGlGNiWRFP 83 (106)
|+....|-+|+|-
T Consensus 31 Gft~~~GE~w~fa 43 (93)
T 3g1j_A 31 NINYERGDVMRFL 43 (93)
T ss_dssp CCEECTTCEEEEE
T ss_pred CcEeCCCCEEEEe
Confidence 5677889999885
No 10
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=5.87 E-value=1.3e+02 Score=24.98 Aligned_cols=8 Identities=38% Similarity=0.870 Sum_probs=5.3
Q ss_pred eecCCeee
Q psy8124 87 QQNGGGRC 94 (106)
Q Consensus 87 ~~nGGgaF 94 (106)
..||||||
T Consensus 280 ~~HGGGAF 287 (407)
T 3s82_A 280 ARHGGGAF 287 (407)
T ss_dssp SCCCSCCC
T ss_pred ccCCCccc
Confidence 45677777
Done!