RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8124
(106 letters)
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 68.2 bits (167), Expect = 4e-15
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 53 TENRAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
R W+ ++ +L++ G +VGLGN RFP +NGGG
Sbjct: 2 EVKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 28.9 bits (65), Expect = 0.20
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 11 KNGHELAPLNARLTNSGNGVTIVITPNQPSDT 42
+N + + R + NG + I + SD
Sbjct: 43 RNKILIKLFDTRYSIRENGQLLTILSVEDSDD 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.23
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 25/61 (40%)
Query: 13 GHELAPLNARLTNSGNGVTIVITPNQPSDTNSNNEGNGRATENRAEWSNKMQFMLSIIGY 72
+E P + + P+ D+ NNEG MLSI
Sbjct: 310 CYEAYPNTS------------LPPSILEDSLENNEG-------------VPSPMLSISNL 344
Query: 73 S 73
+
Sbjct: 345 T 345
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 26.3 bits (58), Expect = 1.4
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 11 KNGHELAPLNARLTNSGNGVTIVITPNQPSDTN------SNNEGNGRAT 53
K+G ++ ++R+ NG + I + DT S G +
Sbjct: 44 KDGVLVSTQDSRIKQLENG-VLQIRYAKLGDTGRYTCIASTPSGEATWS 91
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 26.2 bits (58), Expect = 1.7
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 11 KNGHELAPLNARLTNSGNGVTIVITPNQPSDT 42
K G L + S + SD+
Sbjct: 60 KGGAPLDTSRVHVRTSDFDTVFFVRQAARSDS 91
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 25.4 bits (56), Expect = 2.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 11 KNGHELAPLNARLTNSGNGVTIVITPNQPSDT 42
K G + R T G T+ I + SDT
Sbjct: 44 KEGFTFPGRDPRATIQEQG-TLQIKNLRISDT 74
>3s81_A Putative aspartate racemase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha
beta fold, cytosol; 1.80A {Salmonella enterica subsp}
PDB: 3s7z_A
Length = 268
Score = 25.0 bits (54), Expect = 5.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 41 DTNSNNEGNGRATENRAEWSNKMQFMLSIIGYSVGLG 77
+ ++ G TEN SN M+ + I+G G+G
Sbjct: 3 HHHHHSSGVDLGTENLYFQSNAMKHTIGILG---GMG 36
>1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton
TR pathway, revertant, integral membrane protein,
photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A
{Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rzz_M*
1s00_M* 3dts_M* 2j8c_M* 1aig_M* 1f6n_M* 1fnp_M* 1fnq_M*
1jh0_M* 1l9b_M* 1l9j_M* 1m3x_M* 1ogv_M* 1pcr_M* 1rg5_M*
1rgn_M* 1rqk_M* 1aij_M* 1z9k_B* 2bnp_B* ...
Length = 307
Score = 25.1 bits (54), Expect = 6.4
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 5/63 (7%)
Query: 29 GVTIVITPNQPSDTNSNNEGNGRATENRAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQ 88
G TI+ + + RA F +G++ + I R+
Sbjct: 220 GATILAVSRFGGECELEQIADRGTAAERAA-----LFWRWTMGFNATMEGIHRWAIWMAV 274
Query: 89 NGG 91
Sbjct: 275 LVT 277
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 25.0 bits (54), Expect = 6.8
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 8/51 (15%)
Query: 11 KNGHELAPLNARLTNSGNGVTIVITPNQPSD--------TNSNNEGNGRAT 53
K+ L N + + +++ D T ++ T
Sbjct: 161 KDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNIT 211
>2wjn_M Reaction center protein M chain; bacteriochlorophyll,
lipidic-sponge phase, photosynthesis, R center, electron
transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7
NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M*
2x5u_M* 2x5v_M* 4ac5_M* 3t6e_M* 1prc_M* 1r2c_M* 1vrn_M*
1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 2i5n_M* 5prc_M*
6prc_M* 7prc_M* 3g7f_M* 3t6d_M*
Length = 324
Score = 24.6 bits (53), Expect = 8.9
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 42 TNSNNEGNGRATENRAEWSNKMQ----FMLSIIGYSVGLGNIWRFPYLCQQNGG 91
G R E + ++ F IG++ + ++ R+ +
Sbjct: 223 LAVARFGGDREIEQITDRGTAVERAALFWRWTIGFNATIESVHRWGWFFSLMVM 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.408
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,495,151
Number of extensions: 70716
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 15
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)