RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8124
         (106 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
          homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 79.9 bits (196), Expect = 2e-19
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 56 RAEWSNKMQFMLSIIGYSVGLGNIWRFPYLCQQNGGG 92
          R  W+ ++  +L++ G +VGLGN  RFP    +NGGG
Sbjct: 1  REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 37


>d1l3aa_ d.18.1.2 (A:) Plant transcriptional regulator PBF-2
          {Potato (Solanum tuberosum) [TaxId: 4113]}
          Length = 166

 Score = 25.6 bits (56), Expect = 1.1
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 54 ENRAEWSNKMQFMLSI--IGYSVGLG-----NIWRFPYLCQQNGG 91
            + +WS K  F LS+  IG  + LG       +  P   + + G
Sbjct: 52 VRQYDWSRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEG 96


>d1oxja2 a.118.1.13 (A:656-763) RNA-binding protein Smaug
          {Drosophila melanogaster [TaxId: 7227]}
          Length = 108

 Score = 23.6 bits (51), Expect = 4.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 31 TIVITPNQPSDTNSNNEGN 49
           IV+TP +P ++    E N
Sbjct: 28 NIVLTPMKPLESPGPPEEN 46


>d1jbia_ d.209.1.1 (A:) Cochlin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 100

 Score = 22.9 bits (49), Expect = 6.4
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 22 RLTNSGNGVTIVITPNQPSDTNSNNEG 48
           ++NSG  V +   P + + ++ +  G
Sbjct: 56 VISNSGGPVRVYSLPGRENYSSVDANG 82


>d2cnza1 b.2.3.2 (A:22-144) SafA pilus subunit {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 123

 Score = 23.0 bits (49), Expect = 9.2
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 25 NSGNGVTIVITPNQPSDTNSNNEGNGR 51
          N+G  + + ++ +    ++S  + NG 
Sbjct: 59 NTGKEIGVGLSSDSLRRSDSTEKWNGV 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.408 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,203
Number of extensions: 13952
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)