BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8131
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 31/98 (31%)
Query: 39 CYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPW 98
CYE KFA RC +C+KT +T GGVTY+++PW
Sbjct: 9 CYENKFAPRCARCSKT-------------------------------LTQGGVTYRDQPW 37
Query: 99 HRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAK 136
HREC C+ C T LAGQ+FTSR++ P+C CFGELFA
Sbjct: 38 HRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAS 75
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 127 ADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGED 186
C+ FA RC C K +T G +++ D+ WH +C +C CQ+ L G+ F + ED
Sbjct: 7 GPCYENKFAPRCARCSKTLTQGG----VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDED 62
Query: 187 IICPDC 192
C C
Sbjct: 63 PYCVAC 68
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
+ Y+ + WH +C C C+TP+ + F R+++ YC C+ E FA+
Sbjct: 30 VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAS 75
>pdb|1X4L|A Chain A, Solution Structure Of Lim Domain In Four And A Half Lim
Domains Protein 2
Length = 72
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 143 KPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAK 194
PI+G+GGT++ISFE+R WHNDCF C C SLVGRGF+T+ +DI+CPDC K
Sbjct: 13 NPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 64
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADC 129
++++ WH +CF C CS SL G+ F + D C DC
Sbjct: 24 ISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 62
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEE 42
+ ++ RQWH CF C C + + F+ +I C +C ++
Sbjct: 24 ISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65
>pdb|2D8Z|A Chain A, Solution Structure Of The Third Lim Domain Of Four And A
Half Lim Domains Protein 2 (Fhl-2)
Length = 70
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 86 ITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
IT+GGVTY+ +PWH+ECF C+ C L+GQRFT+R+D +C +CF +L+A
Sbjct: 15 ITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYA 64
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C CKKPIT G +++ ++ WH +CF+C +C+ L G+ F + C
Sbjct: 1 GSSGSSGCVQCKKPITTGG----VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCL 56
Query: 191 DC 192
+C
Sbjct: 57 NC 58
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
+ Y+ + WH++CF C C+ + + F R+ YC NC+ + +A+
Sbjct: 20 VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAS 65
>pdb|1X68|A Chain A, Solution Structures Of The C-Terminal Lim Domain Of Human
Fhl5 Protein
Length = 76
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C +C KPI+G+ G +FI F+D WH++CF C C SLVG+GF+T ++I C
Sbjct: 1 GSSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQ 60
Query: 191 DCAKA 195
C
Sbjct: 61 KCGSG 65
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADC 129
+ +++ WH ECF C CS SL G+ F ++ + FC C
Sbjct: 24 ICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 62
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 3 YKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANC 39
++ QWH +CF C C + K F+ + +EI+C C
Sbjct: 26 FQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 62
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 37/47 (78%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCF 130
+ ITSGG+TY+++PWH +CF C CS LAGQRFT+ ED+ +C DC+
Sbjct: 13 KAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C C K IT G I+++D+ WH DCF+C +C L G+ F + C
Sbjct: 1 GSSGSSGCVKCNKAITSGG----ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCV 56
Query: 191 DCAK 194
DC K
Sbjct: 57 DCYK 60
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEE 42
+ Y+ + WH CF CV C + + F E + YC +CY+
Sbjct: 20 ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61
>pdb|2EGQ|A Chain A, Solution Structure Of The Fourth Lim Domain From Human
Four And A Half Lim Domains 1
Length = 77
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 127 ADCFGELFAKRCYSCKKPITGIG-GTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGE 185
DC+ AK+C CK PITG G G+ +++E + WH+ CF C C +L + F+ E
Sbjct: 7 GDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQE 66
Query: 186 DIICPDCAK 194
+ CPDCAK
Sbjct: 67 QVYCPDCAK 75
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGEL 133
V Y+ + WH CF C CS +LA +RF +++ +C DC +L
Sbjct: 35 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEE 42
+ Y+ + WH+ CF C C + K F+ ++++YC +C ++
Sbjct: 35 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76
>pdb|1X4K|A Chain A, Solution Structure Of Lim Domain In Lim-Protein 3
Length = 72
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
MEYK WHE CF C C+ PIGTKSFIP++ + +C CYE++ A+
Sbjct: 22 MEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAS 67
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C CKK I + GTR + ++ WH CF+C CQ + + FI C
Sbjct: 1 GSSGSSGCQECKKTI--MPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCV 58
Query: 191 DC 192
C
Sbjct: 59 PC 60
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
+ YK WH CF C C + + F ++++ FC C+ + A
Sbjct: 22 MEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 66
>pdb|1WYH|A Chain A, Solution Structure Of The Lim Domain From Human Skeletal
Muscle Lim-Protein 2
Length = 72
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
+EY + WHE CF C C+ P+G++SF+P + YC CYE KFA+
Sbjct: 22 LEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 146 TGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197
T + G+R + + + WH CF+C+ C+ L R F+ D C C + K
Sbjct: 14 TVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
+ Y + WH CF CS C L + F + +C C+ FA
Sbjct: 22 LEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 66
>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 126
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 85 IITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKP 144
I ++ +N+ WH + F C +C + LAG+ + DKP C C+ + A C C
Sbjct: 13 IFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNA 72
Query: 145 ITGIGGTRFISFEDRHWH--NDCFMCASCQSSLVGRGFI 181
I + +++ + WH +CF+C+ C L+G+ F+
Sbjct: 73 ID--PEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM 109
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 31/128 (24%)
Query: 2 EYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLREK 61
+ + + WH K F C C + + + ++ + C CY + A C C+ ++
Sbjct: 20 QAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQR 79
Query: 62 GTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHR--ECFTCSNCSTSLAGQRFTS 119
VTY N WH ECF CS CS L GQ+F
Sbjct: 80 -----------------------------VTYNNFSWHASTECFLCSCCSKCLIGQKFMP 110
Query: 120 REDKPFCA 127
E FC+
Sbjct: 111 VEGMVFCS 118
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Query: 122 DKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFI 181
+KP CA C +F+ + E+++WH F C C S L G ++
Sbjct: 2 EKPRCAGCDELIFS---------------NEYTQAENQNWHLKHFCCFDCDSILAGEIYV 46
Query: 182 TDGEDIICPDC 192
+ +C C
Sbjct: 47 MVNDKPVCKPC 57
>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
Muscle Lim Protein 1
Length = 82
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
+EYK WH+ CF C CK IGT SF P+ ++ YC C+E KFA+
Sbjct: 32 VEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAS 77
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 110 TSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCA 169
+S + + T+RED P C CF + A G + + ++ WH DCF C+
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVA--------------GDQNVEYKGTVWHKDCFTCS 47
Query: 170 SCQSSLVGRGFITDGEDIICPDCAKAKLM 198
+C+ + F GED C C + K
Sbjct: 48 NCKQVIGTGSFFPKGEDFYCVTCHETKFA 76
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 83 FQIITSG--GVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
F+ I +G V YK WH++CFTCSNC + F + + +C C FA
Sbjct: 22 FKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA 76
>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
Length = 101
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGG 150
V YKN WH CF C+ C LA + F ++++K C C + +C C K I + G
Sbjct: 22 VHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAI--VAG 79
Query: 151 TRFISFEDRHWHNDCF 166
+ + ++ WH DCF
Sbjct: 80 DQNVEYKGTVWHKDCF 95
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 33/106 (31%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLRE 60
+ YK R WH+ CF C C P+ ++F+ ++ +I C C + + +C C
Sbjct: 22 VHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGC--------- 72
Query: 61 KGTFQSHSGRINKVYSILFYFLFQIITSG--GVTYKNEPWHRECFT 104
F+ I +G V YK WH++CF+
Sbjct: 73 ----------------------FKAIVAGDQNVEYKGTVWHKDCFS 96
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C C+KPI ++ + +++R WH+ CF CA C L F+ I+C
Sbjct: 1 GSSGSSGCVECRKPIGA--DSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCN 58
Query: 191 DC 192
C
Sbjct: 59 KC 60
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 95 NEPWHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFAKR--CYSCKKPITGIGG 150
++ WH +C +C C L G+R + + C + LF + C SC K I
Sbjct: 22 DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81
Query: 151 TRFISFEDRHWHNDCFMCASCQSSL-VGRGFITDGEDIICP 190
T + +D+ +H +CF CA+CQ VG ++ DI+C
Sbjct: 82 T--MRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 120
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 148 IGGTRFISFEDRHWHNDCFMCASCQSSL--VGR 178
IG F+ D++WH DC C C L VGR
Sbjct: 12 IGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGR 44
>pdb|2EHE|A Chain A, Solution Structure Of The First Lim Domain From Human Four
And A Half Lim Domains Protein 3
Length = 82
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 129 CFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDII 188
C+ FA C C++ I +R + +EDRH+H CF C CQ SL F +++
Sbjct: 9 CYDNTFANTCAECQQLIGH--DSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELL 66
Query: 189 CPDC 192
C DC
Sbjct: 67 CNDC 70
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 3 YKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
Y+ R +HE CF C C+ + + F ++ E+ C +CY F++
Sbjct: 34 YEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSS 77
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 93 YKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAK 136
Y++ +H CF C C SLA + FT ++ + C DC+ F+
Sbjct: 34 YEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSS 77
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 98 WHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFI-SF 156
WH +C CS+C LA +R SR + +C D F + F +C +C+ GI T+ +
Sbjct: 29 WHSKCLKCSDCHVPLA-ERCFSRGESVYCKDDFFKRFGTKCAACQ---LGIPPTQVVRRA 84
Query: 157 EDRHWHNDCFMCASCQSSLV 176
+D +H CF C C+ L
Sbjct: 85 QDFVYHLHCFACVVCKRQLA 104
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCN 52
R WH KC C C P+ + F R + +YC + + ++F T+C C
Sbjct: 27 RHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQ 72
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 158 DRHWHNDCFMCASCQSSLVGRGFITDGEDIICPD 191
DRHWH+ C C+ C L R F + GE + C D
Sbjct: 26 DRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKD 58
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 8 WHEKCFACVVCKTPIGTKS--FIPREQEIYCANCYE 41
+H CFACVVCK + T ++ + + C YE
Sbjct: 89 YHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 98 WHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFI-SF 156
WH +C CS+C LA +R SR + +C D F + F +C +C+ GI T+ +
Sbjct: 83 WHSKCLKCSDCHVPLA-ERCFSRGESVYCKDDFFKRFGTKCAACQ---LGIPPTQVVRRA 138
Query: 157 EDRHWHNDCFMCASCQSSLV 176
+D +H CF C C+ L
Sbjct: 139 QDFVYHLHCFACVVCKRQLA 158
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCN 52
R WH KC C C P+ + F R + +YC + + ++F T+C C
Sbjct: 81 RHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQ 126
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 158 DRHWHNDCFMCASCQSSLVGRGFITDGEDIICPD 191
DRHWH+ C C+ C L R F + GE + C D
Sbjct: 80 DRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKD 112
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 8 WHEKCFACVVCKTPIGTKS--FIPREQEIYCANCYE 41
+H CFACVVCK + T ++ + + C YE
Sbjct: 143 YHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 8 WHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLR-EKGT--- 63
+H+ CF C+VCK + + + EIYC +CY +K+ + L +KG
Sbjct: 30 FHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLG 89
Query: 64 FQSHSGRINKVYSILFYFLFQIITS-------GGVTYKNE-------PWHRECFTCSNCS 109
+ G+ ++ + + Q + G Y E WH+ CF C+ C
Sbjct: 90 IKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCG 149
Query: 110 TSLAGQRFTSREDKPFCADCFGELFAKR 137
SL ++ + +C C+ + F +
Sbjct: 150 KSLESTTLADKDGEIYCKGCYAKNFGPK 177
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATR 47
+ WH+ CF C C + + + ++ EIYC CY + F +
Sbjct: 136 KSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 177
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 77 ILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAK 136
IL F+ +++ + WH C C++C LA + F SR +C + F + F
Sbjct: 16 ILDKFILKVL--------DRHWHSSCLKCADCQMQLADRCF-SRAGSVYCKEDFFKRFGT 66
Query: 137 RCYSCKKPITGIGGTRFI-SFEDRHWHNDCFMCASCQSSLV 176
+C +C++ GI T+ + +D +H CF C C L
Sbjct: 67 KCTACQQ---GIPPTQVVRKAQDFVYHLHCFACIICNRQLA 104
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 153 FISFEDRHWHNDCFMCASCQSSLVGRGFITDG 184
+ DRHWH+ C CA CQ L R F G
Sbjct: 21 ILKVLDRHWHSSCLKCADCQMQLADRCFSRAG 52
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNK 53
++ R WH C C C+ + + F R +YC + ++F T+C C +
Sbjct: 22 LKVLDRHWHSSCLKCADCQMQLADRCF-SRAGSVYCKEDFFKRFGTKCTACQQ 73
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 79 FYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138
Y ++I +G +PWH+ CF C+ C SL T +E + +C C+ + F +
Sbjct: 46 VYAAEKVIGAG------KPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 99
Query: 139 YS 140
+
Sbjct: 100 FG 101
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATR 47
+ WH+ CF C C + + + +E EIYC CY + F +
Sbjct: 57 KPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPK 98
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 106 SNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDC 165
+N +TS Q+F E C D Y+ +K + G G + WH +C
Sbjct: 22 TNPNTSKFAQKFGGAEKCSACGDSV--------YAAEK-VIGAG---------KPWHKNC 63
Query: 166 FMCASCQSSLVGRGFITDGEDIICPDC 192
F CA C SL +I C C
Sbjct: 64 FRCAKCGKSLESTTLTEKEGEIYCKGC 90
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 79 FYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138
Y ++I +G +PWH+ CF C+ C SL T +E + +C C+ + F +
Sbjct: 46 VYAAEKVIGAG------KPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 99
Query: 139 YS 140
+
Sbjct: 100 FG 101
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATR 47
+ WH+ CF C C + + + +E EIYC CY + F +
Sbjct: 57 KPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPK 98
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 106 SNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDC 165
+N +TS Q+F E C D Y+ +K + G G + WH +C
Sbjct: 22 TNPNTSKFAQKFGGAEKCSRCGDSV--------YAAEK-VIGAG---------KPWHKNC 63
Query: 166 FMCASCQSSLVGRGFITDGEDIICPDC 192
F CA C SL +I C C
Sbjct: 64 FRCAKCGKSLESTTLTEKEGEIYCKGC 90
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATR 47
+ WH+ CF C C + + + ++ EIYC CY + F +
Sbjct: 29 KSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 70
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKR 137
V + WH+ CF C+ C SL ++ + +C C+ + F +
Sbjct: 24 VIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 70
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 159 RHWHNDCFMCASCQSSLVGRGFITDGEDIICPDC 192
+ WH CF CA C SL +I C C
Sbjct: 29 KSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGC 62
>pdb|2IYB|E Chain E, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|F Chain F, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|G Chain G, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|H Chain H, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
Length = 65
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 91 VTYKNEPWHR--ECFTCSNCSTSLAGQRFTSREDKPFCA 127
VTY N WH ECF CS CS L GQ+F E FC+
Sbjct: 19 VTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCS 57
>pdb|1X62|A Chain A, Solution Structure Of The Lim Domain Of Carboxyl Terminal
Lim Domain Protein 1
Length = 79
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAK 194
A++ C K TGI G F+ DRH H +C++C C ++L +G + I C A+
Sbjct: 12 AQKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHAR 70
Query: 195 AKL 197
++
Sbjct: 71 ERV 73
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
++ + R H +C+ C C T + K E +IYC E+ +
Sbjct: 30 VKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS 74
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFC 126
V ++ H EC+ C++C T+L + ED+ +C
Sbjct: 30 VKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYC 65
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And
Glycine- Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATR 47
R +H CF C+VC+ + + + + E+YC +CY +K+ +
Sbjct: 28 RSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPK 69
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 98 WHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
+HR CF C C +L + + +C C+G+ + + Y
Sbjct: 30 FHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYG 72
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of MlpCRP3
Length = 58
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELF 134
V +PWH+ CF C+ C SL T ++ + +C C+ + F
Sbjct: 15 VMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKF 44
+ WH+ CF C +C + + + ++ E+YC CY + F
Sbjct: 20 KPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
>pdb|1X61|A Chain A, Solution Structure Of The First Lim Domain Of Thyroid
Receptor Interacting Protein 6 (Trip6)
Length = 72
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 90 GVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCF 130
GV + +H CF CS C L GQ F + E + +C C+
Sbjct: 21 GVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCY 61
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCY 40
R +H CF C C+ + + F E+ YC CY
Sbjct: 27 RVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCY 61
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 148 IGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197
+G + DR +H CF+C++C++ L G+ F C C A L
Sbjct: 16 VGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of
MlpCRP3
Length = 60
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCY 40
R +H+ CF C+ C+ + + + E EIYC CY
Sbjct: 22 RSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCY 56
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 97 PWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFG 131
+H+ CF C C +L + E + +C C+G
Sbjct: 23 SFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYG 57
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCA-DCFGELFAKRCYS 140
VT + WHR C C C +L E KP+C C+ +F + +
Sbjct: 16 VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFG 66
>pdb|2DAR|A Chain A, Solution Structure Of First Lim Domain Of Enigma-Like
Pdz And Lim Domains Protein
Length = 90
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
+ WH + F C CK + F+ + +YC CYE+ FA+
Sbjct: 45 KSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAS 85
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
Q+I + + WH E F C++C ++A F + +C C+ + FA
Sbjct: 33 QVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDC 192
C C + I G F+ + WH + F CA C++++ GF+ + + C C
Sbjct: 28 CAHCNQVIRG----PFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELC 78
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The N-
Terminal Lim Domain Of Lmo4
Length = 122
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFE-DRHWHNDCFMCASCQSSL 175
G L KRC C I RF+ + D +WH+ C C+SCQ+ L
Sbjct: 1 GSLSWKRCAGCGGKIA----DRFLLYAMDSYWHSRCLKCSSCQAQL 42
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFE-DRHWHNDCFMCASCQSSL--VGRGFITDGEDI 187
G L KRC C I RF+ + D +WH+ C C+SCQ+ L +G T I
Sbjct: 1 GSLSWKRCAGCGGKIA----DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMI 56
Query: 188 IC 189
+C
Sbjct: 57 LC 58
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 98 WHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFAKR--CYSCKKPITGIGGTRF 153
WH C CS+C L G ++ C + + LF C +C + I
Sbjct: 28 WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP--ASELV 85
Query: 154 ISFEDRHWHNDCFMCASCQSSLV 176
+ + +H CF C++C++ LV
Sbjct: 86 MRAQGNVYHLKCFTCSTCRNRLV 108
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 41/129 (31%), Gaps = 44/129 (34%)
Query: 8 WHEKCFACVVCKT---PIGTKSFIPREQEIYCANCYEEKFATR--CVKCNKTF----FRL 58
WH +C C C+ IGT S+ + I C N Y F C C ++ +
Sbjct: 28 WHSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGACSACGQSIPASELVM 86
Query: 59 REKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLA-GQRF 117
R +G +H +CFTCS C L G RF
Sbjct: 87 RAQGNV---------------------------------YHLKCFTCSTCRNRLVPGDRF 113
Query: 118 TSREDKPFC 126
FC
Sbjct: 114 HYINGSLFC 122
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 130 FGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL-VGRGFITDG 184
F +F+ +C C +P+ ++S D WH +CF+C C +S G F DG
Sbjct: 10 FLAMFSPKCGGCNRPVL----ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDG 61
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 98 WHRECFTCSNCSTSLAGQRFTSREDKPFC 126
WH ECF C +C TS + F + +PFC
Sbjct: 37 WHPECFVCGDCFTSFSTGSFFELDGRPFC 65
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 8 WHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEK 43
WH +CF C C T T SF + +C Y +
Sbjct: 37 WHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72
>pdb|2D8X|A Chain A, Solution Structure Of The Second Lim Domain Of
Particularly Interesting New Cys-His Protein (Pinch)
Length = 70
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C+ C + I G R I + WH +CF C CQ L GF+ + +C
Sbjct: 1 GSSGSSGCHQCGEFIIG----RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCR 56
Query: 191 DC 192
C
Sbjct: 57 PC 58
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADC 129
+ N WH ECF C C LA F + C C
Sbjct: 20 IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPC 58
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
++ WH +CF C +C+ + F+ C C+ + A+
Sbjct: 20 IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65
>pdb|1V6G|A Chain A, Solution Structure Of The Lim Domain Of The Human Actin
Binding Lim Protein 2
Length = 81
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 133 LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFIT-DGEDIICPD 191
L+ RC+SC + I G +S + +H DCF+CA C+ +T +G++ +C
Sbjct: 13 LYGTRCFSCDQFIEG----EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
Query: 192 CA 193
C+
Sbjct: 69 CS 70
>pdb|1NYP|A Chain A, 4th Lim Domain Of Pinch Protein
pdb|1U5S|B Chain B, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 66
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVG 177
G + C +C++PI G R ++ + WH + F+CA C+ +G
Sbjct: 1 GSMGVPICGACRRPIEG----RVVNAMGKQWHVEHFVCAKCEKPFLG 43
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
V + WH E F C+ C G R R+ +C + +LF
Sbjct: 20 VNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 64
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
+QWH + F C C+ P R+ YC Y + F
Sbjct: 25 KQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 64
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 98 WHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFAKR--CYSCKKPITGIGGTRF 153
WH C CS+C L G ++ C + + LF C +C + I
Sbjct: 26 WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP--ASELV 83
Query: 154 ISFEDRHWHNDCFMCASCQSSLV 176
+ + +H CF C++C++ LV
Sbjct: 84 MRAQGNVYHLKCFTCSTCRNRLV 106
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 136 KRCYSCKKPITGIGGTRFISFE-DRHWHNDCFMCASCQSSL--VGRGFITDGEDIIC 189
KRC C I RF+ + D +WH+ C C+SCQ+ L +G T I+C
Sbjct: 4 KRCAGCGGKIA----DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 56
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 41/129 (31%), Gaps = 44/129 (34%)
Query: 8 WHEKCFACVVCKT---PIGTKSFIPREQEIYCANCYEEKFATR--CVKCNKTF----FRL 58
WH +C C C+ IGT S+ + I C N Y F C C ++ +
Sbjct: 26 WHSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGACSACGQSIPASELVM 84
Query: 59 REKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLA-GQRF 117
R +G +H +CFTCS C L G RF
Sbjct: 85 RAQGNV---------------------------------YHLKCFTCSTCRNRLVPGDRF 111
Query: 118 TSREDKPFC 126
FC
Sbjct: 112 HYINGSLFC 120
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL-VGRGFITDGEDIIC 189
C SC K I T + +D+ +H +CF CA+CQ VG ++ DI+C
Sbjct: 11 CASCDKRIRAYEMT--MRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVC 61
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL-VGRGFITDGEDIICP 190
C SC K I T + +D+ +H +CF CA+CQ VG ++ DI+C
Sbjct: 13 CASCDKRIRAYEMT--MRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCE 64
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFC-ADCFGELFA 135
V+ + WH+ C C CS +L + KPFC C+ LF
Sbjct: 25 VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG 70
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 136 KRCYSCKKPITGIGGTRFISFE-DRHWHNDCFMCASCQSSL--VGRGFITDGEDIIC 189
KRC C I RF+ + D +WH+ C C+SCQ+ L +G T I+C
Sbjct: 62 KRCAGCGGKIA----DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 114
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRG-FITDGEDIIC 189
G A+R C K +GI G + D++ H +CF+CA C +L +G F +GE + C
Sbjct: 18 GAGSAQRMPLCDKCGSGIVGA-VVKARDKYRHPECFVCADCNLNLKQKGYFFVEGE-LYC 75
Query: 190 PDCAKAK 196
A+A+
Sbjct: 76 ETHARAR 82
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding
Lim Protein 3
Length = 80
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
+QWH CF C C I T +I ++ YC + Y +F +
Sbjct: 36 KQWHVSCFKCQTCSV-ILTGEYISKDGVPYCESDYHAQFGS 75
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 95 NEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
++ WH CF C CS L G+ + S++ P+C + F
Sbjct: 35 DKQWHVSCFKCQTCSVILTGE-YISKDGVPYCESDYHAQFG 74
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDG 184
C CK+ I G ++ D+ WH CF C +C L G DG
Sbjct: 17 HCAGCKEEIKH--GQSLLAL-DKQWHVSCFKCQTCSVILTGEYISKDG 61
>pdb|1WIG|A Chain A, Solution Structure Of Rsgi Ruh-019, A Lim Domain Of Actin
Binding Lim Protein 2 (kiaa1808 Protein) From Human Cdna
Length = 73
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCFMCASC-QSSLVGRGFITDGEDIICPDCAKA 195
C SC+K ITG R + ++H+H C +C C Q G G I P C +A
Sbjct: 8 CDSCEKYITG----RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62
>pdb|2COR|A Chain A, Solution Structure Of The Third Lim Domain Of Particularly
Interesting New Cys-His Protein
Length = 79
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 85 IITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
II + +KN+P+H + F C+NC L +RE K GEL+ C+
Sbjct: 24 IIDEQPLIFKNDPYHPDHFNCANCGKELTAD---ARELK-------GELYCLPCHD 69
>pdb|1X6A|A Chain A, Solution Structures Of The Second Lim Domain Of Human
Lim- Kinase 2 (limk2)
Length = 81
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 7 QWHEKCFACVVCKTPI--GTKSFIPREQEIYCANCYEE 42
++H +CFAC+ CK I G + + +YC C+ E
Sbjct: 36 KYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNE 73
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
V E +H +CF C+ C F E + +C F LFA
Sbjct: 28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
V E +H +CF C+ C F E + +C F LFA
Sbjct: 28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
V E +H +CF C+ C F E + +C F LFA
Sbjct: 24 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 68
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
+I+ S G E +H CF C+ C F E + +C F LFA
Sbjct: 26 RIVNSNG-----ELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 8 WHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
+HE CF C C P F E YC + ++ FA
Sbjct: 35 YHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFA 72
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 6 RQWHEKCFACVVCKTPIGTKSF-IPREQEIYCANCYEEKFAT 46
+ +H CF CVVC + F + +I+C + KFA+
Sbjct: 35 KAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFAS 76
>pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal
Lim Domain Of Lmo2 And Ldb1-Lid
Length = 114
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 148 IGGTRFISFEDRHWHNDCFMCASCQSSL--VGR 178
IG F+ D++WH DC C C L VGR
Sbjct: 13 IGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGR 45
>pdb|2D8Y|A Chain A, Solution Structure Of The Lim Domain Of Epithelial Protein
Lost In Neoplasm
Length = 91
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 98 WHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKR 137
+H CF CS C+ L+ + S + +C F +LF +
Sbjct: 38 FHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,089,748
Number of Sequences: 62578
Number of extensions: 239100
Number of successful extensions: 699
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 181
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)