Query psy8131
Match_columns 198
No_of_seqs 232 out of 1576
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 19:23:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xqn_T Testin, TESS; metal-bin 100.0 7.1E-32 2.4E-36 194.1 8.6 122 44-198 2-126 (126)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 5.9E-31 2E-35 190.4 7.5 111 85-197 11-127 (131)
3 2jtn_A LIM domain-binding prot 100.0 4.4E-30 1.5E-34 195.8 7.8 133 31-197 43-181 (182)
4 1b8t_A Protein (CRP1); LIM dom 100.0 7E-30 2.4E-34 196.2 8.4 145 2-146 24-186 (192)
5 1rut_X Flinc4, fusion protein 100.0 1.2E-29 4E-34 194.4 6.6 112 85-198 14-131 (188)
6 2rgt_A Fusion of LIM/homeobox 100.0 7.7E-29 2.6E-33 186.8 7.3 110 85-197 15-127 (169)
7 1b8t_A Protein (CRP1); LIM dom 99.9 1.3E-28 4.5E-33 189.1 7.4 107 88-197 20-174 (192)
8 2xqn_T Testin, TESS; metal-bin 99.9 1.4E-28 4.9E-33 176.8 5.4 103 1-134 19-125 (126)
9 2xjy_A Rhombotin-2; oncoprotei 99.9 2.2E-28 7.5E-33 176.9 4.8 105 1-136 18-129 (131)
10 1rut_X Flinc4, fusion protein 99.9 4.1E-28 1.4E-32 185.8 3.2 137 1-168 21-170 (188)
11 2rgt_A Fusion of LIM/homeobox 99.9 6.5E-27 2.2E-31 176.2 7.6 128 2-167 23-156 (169)
12 2cup_A Skeletal muscle LIM-pro 99.9 7.8E-27 2.7E-31 161.4 6.7 83 88-172 19-101 (101)
13 2jtn_A LIM domain-binding prot 99.9 8.5E-26 2.9E-30 172.0 7.2 102 2-133 77-180 (182)
14 1m3v_A FLIN4, fusion of the LI 99.9 4.6E-24 1.6E-28 152.3 4.1 97 85-198 14-115 (122)
15 2cup_A Skeletal muscle LIM-pro 99.9 1.7E-23 5.7E-28 144.6 3.8 78 1-109 22-101 (101)
16 1x3h_A Leupaxin; paxillin fami 99.9 2.7E-22 9.2E-27 132.7 4.7 79 31-140 1-79 (80)
17 2cuq_A Four and A half LIM dom 99.9 2.7E-22 9.1E-27 132.7 4.5 79 31-140 1-79 (80)
18 2ehe_A Four and A half LIM dom 99.8 1.7E-22 6E-27 134.3 2.5 81 31-140 1-81 (82)
19 2dlo_A Thyroid receptor-intera 99.8 1.7E-21 5.7E-26 129.2 5.0 78 31-140 2-80 (81)
20 1j2o_A FLIN2, fusion of rhombo 99.8 6.7E-21 2.3E-25 134.3 6.2 91 85-197 12-106 (114)
21 1x63_A Skeletal muscle LIM-pro 99.8 7.6E-21 2.6E-25 126.3 4.2 78 31-139 1-80 (82)
22 2egq_A FHL1 protein; LIM domai 99.8 1.4E-20 4.6E-25 123.6 3.9 76 121-196 1-77 (77)
23 2ehe_A Four and A half LIM dom 99.8 1.3E-20 4.6E-25 125.1 3.8 75 121-197 1-75 (82)
24 1m3v_A FLIN4, fusion of the LI 99.8 4.2E-21 1.4E-25 137.0 1.1 90 1-134 21-114 (122)
25 1x6a_A LIMK-2, LIM domain kina 99.8 2.6E-20 8.8E-25 123.4 4.2 79 31-140 1-81 (81)
26 2cuq_A Four and A half LIM dom 99.8 2E-20 6.9E-25 123.6 3.3 73 121-197 1-73 (80)
27 2egq_A FHL1 protein; LIM domai 99.8 3.8E-20 1.3E-24 121.4 3.1 76 31-132 1-76 (77)
28 1x3h_A Leupaxin; paxillin fami 99.8 3.5E-20 1.2E-24 122.4 2.6 73 121-197 1-73 (80)
29 1x63_A Skeletal muscle LIM-pro 99.8 5.3E-20 1.8E-24 122.1 3.3 75 121-197 1-75 (82)
30 2dlo_A Thyroid receptor-intera 99.8 1.3E-19 4.4E-24 120.0 2.6 72 121-197 2-74 (81)
31 1x6a_A LIMK-2, LIM domain kina 99.8 1.7E-19 6E-24 119.4 2.4 73 121-197 1-75 (81)
32 1v6g_A Actin binding LIM prote 99.7 1.6E-18 5.6E-23 114.7 4.4 72 122-197 2-74 (81)
33 1j2o_A FLIN2, fusion of rhombo 99.7 2E-18 7E-23 121.5 4.6 85 1-134 19-106 (114)
34 1iml_A CRIP, cysteine rich int 99.7 5.7E-18 1.9E-22 110.7 5.3 63 85-147 9-73 (76)
35 1x68_A FHL5 protein; four-and- 99.7 2.3E-18 8E-23 112.6 3.0 70 42-142 2-75 (76)
36 2dar_A PDZ and LIM domain prot 99.7 1.4E-17 4.7E-22 112.4 5.9 75 35-140 15-89 (90)
37 2d8z_A Four and A half LIM dom 99.7 8.8E-18 3E-22 108.0 4.7 67 43-140 3-69 (70)
38 2cur_A Skeletal muscle LIM-pro 99.7 1.2E-17 4.2E-22 107.1 5.2 56 85-140 14-69 (69)
39 1v6g_A Actin binding LIM prote 99.7 8E-18 2.7E-22 111.3 3.9 73 31-134 1-74 (81)
40 1x4k_A Skeletal muscle LIM-pro 99.7 2.2E-17 7.6E-22 106.7 4.7 68 42-140 2-71 (72)
41 1wyh_A SLIM 2, skeletal muscle 99.7 1.7E-17 5.7E-22 107.3 3.9 68 42-140 2-71 (72)
42 1nyp_A Pinch protein; LIM doma 99.7 2.7E-17 9.1E-22 104.5 2.9 65 42-137 2-66 (66)
43 1wig_A KIAA1808 protein; LIM d 99.6 1E-16 3.4E-21 104.0 4.6 61 133-197 3-64 (73)
44 1a7i_A QCRP2 (LIM1); LIM domai 99.6 3.8E-17 1.3E-21 108.1 2.7 58 88-145 20-77 (81)
45 2cu8_A Cysteine-rich protein 2 99.6 1E-16 3.5E-21 104.7 4.7 56 85-140 18-75 (76)
46 1x68_A FHL5 protein; four-and- 99.6 1.5E-16 5E-21 103.9 5.4 66 132-197 2-67 (76)
47 1x4l_A Skeletal muscle LIM-pro 99.6 1.5E-16 5.3E-21 102.7 4.5 50 89-138 22-71 (72)
48 1g47_A Pinch protein; LIM doma 99.6 1.1E-16 3.7E-21 104.7 3.1 52 88-139 25-76 (77)
49 2dj7_A Actin-binding LIM prote 99.6 3.3E-16 1.1E-20 103.3 4.7 55 85-140 24-79 (80)
50 1x4l_A Skeletal muscle LIM-pro 99.6 3.9E-16 1.3E-20 100.8 4.4 65 133-197 3-67 (72)
51 1nyp_A Pinch protein; LIM doma 99.6 1.4E-16 4.6E-21 101.2 2.1 62 132-197 2-63 (66)
52 2d8x_A Protein pinch; LIM doma 99.6 6.6E-16 2.2E-20 99.2 5.1 55 85-139 14-68 (70)
53 1wig_A KIAA1808 protein; LIM d 99.6 4.6E-16 1.6E-20 100.8 4.1 64 43-137 3-67 (73)
54 1x4k_A Skeletal muscle LIM-pro 99.6 4.1E-16 1.4E-20 100.6 3.6 64 132-197 2-65 (72)
55 2cor_A Pinch protein; LIM doma 99.6 5.5E-16 1.9E-20 102.0 4.2 54 85-139 24-77 (79)
56 2d8z_A Four and A half LIM dom 99.6 5E-16 1.7E-20 99.7 3.7 61 133-197 3-63 (70)
57 1x61_A Thyroid receptor intera 99.6 1.2E-15 4.1E-20 98.5 5.0 52 89-141 20-71 (72)
58 2dar_A PDZ and LIM domain prot 99.6 6.7E-16 2.3E-20 104.0 4.0 66 128-197 18-83 (90)
59 1x62_A C-terminal LIM domain p 99.6 4.2E-16 1.5E-20 102.5 2.8 55 85-139 24-78 (79)
60 1x64_A Alpha-actinin-2 associa 99.6 1.2E-15 4.1E-20 102.6 5.1 55 85-139 34-88 (89)
61 2iyb_E Testin, TESS, TES; LIM 99.6 5.6E-16 1.9E-20 98.1 3.1 62 134-197 1-65 (65)
62 1wyh_A SLIM 2, skeletal muscle 99.6 6.4E-16 2.2E-20 99.7 3.4 64 132-197 2-65 (72)
63 2cur_A Skeletal muscle LIM-pro 99.6 4.9E-16 1.7E-20 99.5 2.7 61 133-197 3-63 (69)
64 1x61_A Thyroid receptor intera 99.6 7.9E-16 2.7E-20 99.3 3.4 63 133-197 3-65 (72)
65 3f6q_B LIM and senescent cell 99.6 7E-16 2.4E-20 99.4 2.7 65 131-197 7-71 (72)
66 2d8x_A Protein pinch; LIM doma 99.6 1.3E-15 4.3E-20 97.8 3.2 60 134-197 4-63 (70)
67 2l3k_A Rhombotin-2, linker, LI 99.6 1.6E-15 5.4E-20 108.1 3.8 79 40-147 1-82 (123)
68 2d8y_A Eplin protein; LIM doma 99.6 2.6E-15 8.8E-20 101.4 4.5 52 89-140 29-80 (91)
69 2cu8_A Cysteine-rich protein 2 99.5 3.4E-15 1.2E-19 97.4 4.5 62 133-197 7-69 (76)
70 2iyb_E Testin, TESS, TES; LIM 99.5 3.7E-15 1.3E-19 94.3 3.9 49 85-133 11-64 (65)
71 1a7i_A QCRP2 (LIM1); LIM domai 99.5 1.2E-15 4.2E-20 100.7 1.3 54 1-54 23-76 (81)
72 1iml_A CRIP, cysteine rich int 99.5 2.1E-15 7.2E-20 98.4 2.3 54 1-54 16-70 (76)
73 1g47_A Pinch protein; LIM doma 99.5 2.5E-15 8.5E-20 98.2 2.5 63 133-197 9-71 (77)
74 2cor_A Pinch protein; LIM doma 99.5 5.2E-15 1.8E-19 97.3 3.6 60 133-197 13-72 (79)
75 2dj7_A Actin-binding LIM prote 99.5 9.7E-15 3.3E-19 96.2 4.7 59 135-197 15-73 (80)
76 3f6q_B LIM and senescent cell 99.5 4E-15 1.4E-19 95.8 2.7 64 41-135 7-72 (72)
77 1x62_A C-terminal LIM domain p 99.5 2.5E-15 8.7E-20 98.7 1.3 59 135-197 15-73 (79)
78 1x64_A Alpha-actinin-2 associa 99.5 1.1E-14 3.6E-19 97.9 4.0 60 134-197 24-83 (89)
79 2l3k_A Rhombotin-2, linker, LI 99.5 7.1E-15 2.4E-19 104.6 3.0 66 130-197 1-69 (123)
80 2l4z_A DNA endonuclease RBBP8, 99.5 1.6E-14 5.5E-19 102.8 4.0 51 85-135 70-123 (123)
81 2co8_A NEDD9 interacting prote 99.5 2.7E-14 9.2E-19 94.5 4.1 60 135-197 15-76 (82)
82 2l4z_A DNA endonuclease RBBP8, 99.5 1.4E-14 4.8E-19 103.1 2.3 63 132-197 58-122 (123)
83 2co8_A NEDD9 interacting prote 99.5 3.1E-14 1.1E-18 94.2 3.5 51 88-138 28-80 (82)
84 2d8y_A Eplin protein; LIM doma 99.4 2.6E-14 8.9E-19 96.4 2.5 61 134-197 14-74 (91)
85 1zfo_A LAsp-1; LIM domain, zin 97.7 9.8E-06 3.4E-10 42.8 1.1 29 135-166 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.1 0.00011 3.7E-09 38.7 0.9 15 89-103 17-31 (31)
87 1jjd_A Metallothionein, SMTA; 86.9 0.5 1.7E-05 27.9 2.6 30 14-43 9-39 (55)
88 2ecm_A Ring finger and CHY zin 84.9 0.9 3.1E-05 25.9 3.2 44 103-146 6-54 (55)
89 4ap4_A E3 ubiquitin ligase RNF 83.6 0.78 2.7E-05 31.3 2.9 104 11-147 6-125 (133)
90 2djb_A Polycomb group ring fin 82.6 1.9 6.4E-05 26.2 4.1 45 102-147 15-62 (72)
91 3vk6_A E3 ubiquitin-protein li 80.7 1.7 5.9E-05 28.8 3.5 63 104-175 3-71 (101)
92 2ecy_A TNF receptor-associated 80.4 1.5 5.2E-05 26.1 3.1 44 103-147 16-62 (66)
93 1jjd_A Metallothionein, SMTA; 79.7 1.3 4.5E-05 26.0 2.4 29 104-132 9-38 (55)
94 1t1h_A Gspef-atpub14, armadill 79.3 1.9 6.6E-05 26.5 3.4 46 101-147 7-55 (78)
95 2ecm_A Ring finger and CHY zin 77.3 3.6 0.00012 23.2 4.0 43 135-177 5-55 (55)
96 2ysl_A Tripartite motif-contai 77.2 2.7 9.1E-05 25.4 3.5 44 103-147 21-69 (73)
97 1jm7_B BARD1, BRCA1-associated 76.4 2.6 8.8E-05 28.4 3.6 45 102-147 22-67 (117)
98 2ecv_A Tripartite motif-contai 74.8 4.6 0.00016 24.9 4.3 44 103-147 20-71 (85)
99 2ecw_A Tripartite motif-contai 74.4 4.3 0.00015 25.1 4.1 44 103-147 20-71 (85)
100 2yur_A Retinoblastoma-binding 71.8 4.8 0.00016 24.5 3.7 44 103-147 16-64 (74)
101 1chc_A Equine herpes virus-1 r 71.7 6.2 0.00021 23.3 4.2 45 103-147 6-52 (68)
102 2djb_A Polycomb group ring fin 70.7 4.2 0.00014 24.6 3.2 45 11-55 14-60 (72)
103 1jm7_B BARD1, BRCA1-associated 70.1 4.1 0.00014 27.3 3.4 44 12-55 22-65 (117)
104 1jm7_A BRCA1, breast cancer ty 70.0 5.3 0.00018 26.2 3.9 44 103-147 22-70 (112)
105 2y43_A E3 ubiquitin-protein li 69.3 3.8 0.00013 26.5 3.0 44 103-147 23-69 (99)
106 1g25_A CDK-activating kinase a 69.3 5.8 0.0002 23.3 3.6 45 103-147 4-55 (65)
107 2gvi_A Conserved hypothetical 67.5 1.2 4.1E-05 33.6 0.2 30 103-132 173-202 (204)
108 2csy_A Zinc finger protein 183 67.5 4.7 0.00016 24.9 3.1 44 103-147 16-61 (81)
109 1iym_A EL5; ring-H2 finger, ub 67.1 4.3 0.00015 22.9 2.6 10 122-131 28-37 (55)
110 2eqg_A Tumor necrosis factor, 67.0 4.4 0.00015 22.4 2.3 18 117-134 22-39 (49)
111 1bor_A Transcription factor PM 67.0 4.4 0.00015 23.3 2.6 43 103-147 7-49 (56)
112 2ct2_A Tripartite motif protei 66.8 7.2 0.00025 24.2 3.9 45 103-147 16-68 (88)
113 2ysm_A Myeloid/lymphoid or mix 66.7 4.4 0.00015 27.0 2.9 73 95-194 29-103 (111)
114 1e4u_A Transcriptional repress 66.6 6.8 0.00023 24.4 3.6 45 103-147 12-62 (78)
115 2ckl_A Polycomb group ring fin 65.9 5.8 0.0002 26.1 3.4 45 102-147 15-62 (108)
116 2d8t_A Dactylidin, ring finger 64.6 5.8 0.0002 23.8 3.0 45 102-147 15-61 (71)
117 2e5r_A Dystrobrevin alpha; ZZ 63.2 9 0.00031 22.9 3.5 39 3-43 4-45 (63)
118 4ap4_A E3 ubiquitin ligase RNF 62.5 3.3 0.00011 28.0 1.7 87 103-195 8-108 (133)
119 2egp_A Tripartite motif-contai 62.2 4.7 0.00016 24.6 2.2 44 103-147 13-65 (79)
120 4ic3_A E3 ubiquitin-protein li 62.0 12 0.0004 22.8 4.1 42 103-147 25-67 (74)
121 2xeu_A Ring finger protein 4; 61.4 2.8 9.5E-05 24.4 1.0 45 103-147 4-56 (64)
122 3l11_A E3 ubiquitin-protein li 61.0 5.2 0.00018 26.6 2.5 43 103-146 16-61 (115)
123 1rmd_A RAG1; V(D)J recombinati 60.0 6 0.00021 26.3 2.6 44 103-147 24-70 (116)
124 3ng2_A RNF4, snurf, ring finge 59.5 2.1 7.1E-05 25.7 0.2 45 103-147 11-63 (71)
125 3hcs_A TNF receptor-associated 59.0 5.5 0.00019 28.5 2.5 45 102-147 18-65 (170)
126 2ect_A Ring finger protein 126 59.0 11 0.00038 22.9 3.6 45 103-147 16-64 (78)
127 3lrq_A E3 ubiquitin-protein li 58.9 6.8 0.00023 25.4 2.7 44 103-147 23-70 (100)
128 2gvi_A Conserved hypothetical 58.5 2.2 7.6E-05 32.1 0.2 30 166-195 173-202 (204)
129 4ayc_A E3 ubiquitin-protein li 58.3 10 0.00035 26.2 3.7 44 103-147 54-99 (138)
130 3fl2_A E3 ubiquitin-protein li 58.2 8.3 0.00028 26.0 3.1 44 103-147 53-99 (124)
131 2ckl_B Ubiquitin ligase protei 57.5 6.2 0.00021 28.1 2.5 45 102-147 54-102 (165)
132 3ztg_A E3 ubiquitin-protein li 57.5 6.6 0.00023 24.8 2.4 44 102-146 13-61 (92)
133 2y43_A E3 ubiquitin-protein li 57.0 7.7 0.00026 25.0 2.7 44 12-55 22-67 (99)
134 3hct_A TNF receptor-associated 55.3 7.4 0.00025 26.1 2.5 44 103-147 19-65 (118)
135 2ecg_A Baculoviral IAP repeat- 54.1 14 0.00049 22.3 3.5 42 103-147 26-68 (75)
136 2ecl_A Ring-box protein 2; RNF 52.4 6 0.00021 24.6 1.5 19 157-175 48-74 (81)
137 2ct0_A Non-SMC element 1 homol 52.0 6.3 0.00022 24.5 1.5 10 103-112 16-25 (74)
138 2ecn_A Ring finger protein 141 51.8 4.1 0.00014 24.4 0.6 43 103-147 16-60 (70)
139 1z6u_A NP95-like ring finger p 51.5 12 0.00041 26.4 3.1 44 103-147 79-125 (150)
140 2ecj_A Tripartite motif-contai 50.8 19 0.00066 20.1 3.5 30 103-133 16-45 (58)
141 2das_A Zinc finger MYM-type pr 50.4 13 0.00044 22.1 2.6 24 167-190 22-48 (62)
142 2kr4_A Ubiquitin conjugation f 50.3 19 0.00064 22.6 3.7 47 100-147 12-60 (85)
143 2jrp_A Putative cytoplasmic pr 49.9 9.2 0.00032 24.2 2.0 62 104-180 4-66 (81)
144 2ea6_A Ring finger protein 4; 49.7 7.9 0.00027 22.7 1.7 46 102-147 15-68 (69)
145 2kre_A Ubiquitin conjugation f 48.7 18 0.00063 23.5 3.5 47 100-147 27-75 (100)
146 2kre_A Ubiquitin conjugation f 48.5 15 0.0005 24.0 3.0 45 10-55 27-73 (100)
147 1x4j_A Ring finger protein 38; 47.9 17 0.00057 21.9 3.1 46 102-147 23-72 (75)
148 1wgm_A Ubiquitin conjugation f 47.1 16 0.00054 23.7 3.0 45 10-55 20-67 (98)
149 1vq8_U 50S ribosomal protein L 47.0 10 0.00036 23.0 1.9 27 136-162 4-30 (66)
150 3j21_V 50S ribosomal protein L 46.9 11 0.00037 22.9 1.9 27 136-162 5-31 (66)
151 2ysj_A Tripartite motif-contai 46.7 19 0.00064 20.7 3.0 32 102-134 20-51 (63)
152 1wgm_A Ubiquitin conjugation f 46.1 23 0.00077 23.0 3.6 47 100-147 20-69 (98)
153 3hct_A TNF receptor-associated 46.1 8.5 0.00029 25.7 1.6 40 136-179 19-67 (118)
154 2ep4_A Ring finger protein 24; 45.2 28 0.00096 20.7 3.8 45 103-147 16-64 (74)
155 1weo_A Cellulose synthase, cat 44.3 31 0.001 22.3 3.8 45 103-147 17-70 (93)
156 2d8v_A Zinc finger FYVE domain 43.1 13 0.00043 22.6 1.8 15 29-43 24-38 (67)
157 4ayc_A E3 ubiquitin-protein li 42.5 10 0.00034 26.2 1.5 38 136-177 54-99 (138)
158 2ckl_B Ubiquitin ligase protei 42.2 14 0.00048 26.2 2.3 43 13-55 55-100 (165)
159 2kiz_A E3 ubiquitin-protein li 41.8 38 0.0013 19.7 4.0 45 103-147 15-63 (69)
160 2c2l_A CHIP, carboxy terminus 41.6 26 0.0009 26.6 4.0 48 99-147 205-255 (281)
161 3nw0_A Non-structural maintena 41.5 11 0.00039 28.8 1.8 41 135-178 180-230 (238)
162 3hcs_A TNF receptor-associated 40.8 17 0.00059 25.8 2.6 43 12-55 18-63 (170)
163 2vje_B MDM4 protein; proto-onc 40.4 31 0.0011 20.1 3.3 44 104-147 9-56 (63)
164 4gne_A Histone-lysine N-methyl 39.8 31 0.0011 23.0 3.5 32 96-145 37-68 (107)
165 3knv_A TNF receptor-associated 38.0 14 0.00049 25.7 1.7 44 11-55 30-76 (141)
166 1znf_A 31ST zinc finger from X 36.9 15 0.00053 16.2 1.3 12 13-24 2-13 (27)
167 2m0e_A Zinc finger and BTB dom 34.8 22 0.00075 15.7 1.7 13 13-25 3-15 (29)
168 1z6u_A NP95-like ring finger p 34.8 16 0.00056 25.7 1.6 39 136-178 79-126 (150)
169 1ard_A Yeast transcription fac 34.1 18 0.00061 16.2 1.3 12 13-24 3-14 (29)
170 2vpb_A Hpygo1, pygopus homolog 34.0 15 0.00053 22.0 1.2 28 136-165 9-39 (65)
171 2ea5_A Cell growth regulator w 33.6 75 0.0026 18.7 5.0 42 103-147 16-58 (68)
172 2cs3_A Protein C14ORF4, MY039 33.4 38 0.0013 21.4 2.9 32 13-44 16-50 (93)
173 2jne_A Hypothetical protein YF 33.2 9.1 0.00031 25.2 0.0 39 13-56 33-72 (101)
174 1paa_A Yeast transcription fac 32.0 22 0.00075 16.0 1.4 13 13-25 3-15 (30)
175 2d8s_A Cellular modulator of i 31.7 50 0.0017 20.4 3.4 17 159-175 42-68 (80)
176 2yu4_A E3 SUMO-protein ligase 31.6 40 0.0014 21.4 3.0 45 102-147 7-63 (94)
177 1klr_A Zinc finger Y-chromosom 31.5 23 0.0008 15.8 1.5 13 13-25 3-15 (30)
178 3oue_A Cytochrome C family pro 30.7 11 0.00038 27.0 0.1 40 14-53 29-79 (158)
179 2yho_A E3 ubiquitin-protein li 30.2 49 0.0017 20.2 3.2 41 104-147 20-61 (79)
180 2lvu_A Zinc finger and BTB dom 35.8 11 0.00038 16.7 0.0 12 13-24 3-14 (26)
181 2jny_A Uncharacterized BCR; st 29.0 24 0.00081 21.4 1.4 24 13-39 11-34 (67)
182 1v9x_A Poly (ADP-ribose) polym 28.9 17 0.00059 24.5 0.8 12 136-147 21-32 (114)
183 2e6s_A E3 ubiquitin-protein li 28.4 38 0.0013 21.0 2.3 45 137-193 28-75 (77)
184 2kvh_A Zinc finger and BTB dom 28.1 15 0.00052 16.3 0.3 12 13-24 4-15 (27)
185 2hf1_A Tetraacyldisaccharide-1 28.1 25 0.00085 21.4 1.4 24 13-39 9-32 (68)
186 2f42_A STIP1 homology and U-bo 28.1 46 0.0016 24.3 3.1 47 100-147 104-153 (179)
187 2dip_A Zinc finger SWIM domain 27.9 45 0.0015 21.8 2.7 37 6-43 26-65 (98)
188 2vje_A E3 ubiquitin-protein li 27.5 90 0.0031 18.0 3.9 44 104-147 10-57 (64)
189 2jr6_A UPF0434 protein NMA0874 27.5 26 0.0009 21.3 1.4 24 13-39 9-32 (68)
190 2dmj_A Poly (ADP-ribose) polym 27.3 17 0.00059 24.1 0.6 13 135-147 25-37 (106)
191 3d00_A Tungsten formylmethanof 27.2 11 0.00039 27.9 -0.4 25 103-133 164-188 (191)
192 2c2l_A CHIP, carboxy terminus 27.0 40 0.0014 25.6 2.8 46 9-55 205-253 (281)
193 2lvr_A Zinc finger and BTB dom 32.8 13 0.00046 16.8 0.0 12 13-24 4-15 (30)
194 2pk7_A Uncharacterized protein 26.4 28 0.00095 21.2 1.4 24 13-39 9-32 (69)
195 1twf_L ABC10-alpha, DNA-direct 26.0 28 0.00097 21.3 1.4 10 136-145 29-38 (70)
196 2js4_A UPF0434 protein BB2007; 25.4 25 0.00085 21.5 1.0 24 13-39 9-32 (70)
197 1rik_A E6APC1 peptide; E6-bind 25.1 21 0.00071 16.0 0.5 12 13-24 3-14 (29)
198 2l0b_A E3 ubiquitin-protein li 25.0 53 0.0018 20.5 2.7 45 103-147 41-89 (91)
199 2kvf_A Zinc finger and BTB dom 24.6 20 0.0007 15.9 0.4 12 13-24 4-15 (28)
200 2zkr_u 60S ribosomal protein L 24.5 36 0.0012 24.4 1.9 27 136-162 4-30 (157)
201 1rim_A E6APC2 peptide; E6-bind 24.5 33 0.0011 16.2 1.3 12 13-24 3-14 (33)
202 2fc7_A ZZZ3 protein; structure 23.9 42 0.0014 21.1 1.9 23 4-27 14-37 (82)
203 2m0f_A Zinc finger and BTB dom 23.9 20 0.0007 15.9 0.4 12 13-24 3-14 (29)
204 2elr_A Zinc finger protein 406 23.9 33 0.0011 16.3 1.3 13 12-24 9-21 (36)
205 2lvt_A Zinc finger and BTB dom 29.6 17 0.00057 16.5 0.0 12 13-24 3-14 (29)
206 1p7a_A BF3, BKLF, kruppel-like 23.4 34 0.0012 16.4 1.3 13 12-24 11-23 (37)
207 2m0d_A Zinc finger and BTB dom 22.9 23 0.00077 15.8 0.4 12 13-24 4-15 (30)
208 3py7_A Maltose-binding peripla 22.9 39 0.0013 28.5 2.2 30 102-131 400-441 (523)
209 1wen_A Inhibitor of growth fam 22.8 1.1E+02 0.0036 18.5 3.6 10 185-194 55-64 (71)
210 3izc_Z 60S ribosomal protein R 22.5 29 0.00098 24.8 1.0 27 136-162 4-30 (155)
211 4a17_T RPL24, 60S ribosomal pr 22.5 29 0.00098 24.9 1.0 27 136-162 6-32 (158)
212 1pft_A TFIIB, PFTFIIBN; N-term 22.0 27 0.00092 19.4 0.7 23 13-38 6-29 (50)
213 1wfh_A Zinc finger (AN1-like) 21.4 61 0.0021 19.4 2.2 27 104-130 17-43 (64)
214 2jvx_A NF-kappa-B essential mo 20.9 25 0.00084 17.4 0.3 12 13-24 4-15 (28)
215 4ayb_P DNA-directed RNA polyme 20.8 71 0.0024 17.9 2.2 32 103-147 4-35 (48)
216 3dpl_R Ring-box protein 1; ubi 20.2 67 0.0023 21.0 2.5 22 154-175 70-99 (106)
No 1
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=7.1e-32 Score=194.07 Aligned_cols=122 Identities=27% Similarity=0.705 Sum_probs=111.2
Q ss_pred hcccccccccccccccccccccccCCcccccceeeeeeeeeeec-cCceEeCCcCccccCCCCccCcCCCCCCceeecCC
Q psy8131 44 FATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIIT-SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSRED 122 (198)
Q Consensus 44 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g 122 (198)
++++|.+|+++ |. +..+.++|+.||++||+|+.|+++|++..|+++||
T Consensus 2 ~~~~C~~C~~~-------------------------------I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g 50 (126)
T 2xqn_T 2 EKPRCAGCDEL-------------------------------IFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVND 50 (126)
T ss_dssp CCCBBTTTSSB-------------------------------CCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETT
T ss_pred cCCCCccCCCE-------------------------------eCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECC
Confidence 57899999994 44 44678999999999999999999999888999999
Q ss_pred cccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCccc--ccCcccCcCCCCCCCCceEecCCceeCcccccccCC
Q psy8131 123 KPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWH--NDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKLM 198 (198)
Q Consensus 123 ~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~~ 198 (198)
++||+.||.++++++|++|+++|.+. +.+|++.++.|| ++||+|..|+++|.++.|+..++++||..++.++|.
T Consensus 51 ~~yC~~cy~~~~~~~C~~C~~~I~~~--~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f~ 126 (126)
T 2xqn_T 51 KPVCKPCYVKNHAVVCQGCHNAIDPE--VQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS 126 (126)
T ss_dssp EEEEHHHHHHHSCCBCTTTCSBCCTT--SCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSCC
T ss_pred EEechHHhCcCcCccCcccCCcCCcC--ceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhcC
Confidence 99999999999999999999999962 478999999999 999999999999999999999999999977777663
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.97 E-value=5.9e-31 Score=190.44 Aligned_cols=111 Identities=27% Similarity=0.623 Sum_probs=100.8
Q ss_pred eeccC-ceEeCCcCccccCCCCccCcCCCC--CCceeecCCcccchhhHhhhhcc--CCCCCCCCCcCCCCceEEeeCCC
Q psy8131 85 IITSG-GVTYKNEPWHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFAK--RCYSCKKPITGIGGTRFISFEDR 159 (198)
Q Consensus 85 ~i~~~-~~~~~~~~~H~~CF~C~~C~~~l~--~~~~~~~~g~~yC~~c~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~ 159 (198)
+|.+. .+.++|+.||++||+|+.|+++|+ +..|+.+||++||+.||.+++++ +|++|+++|.+. +.++.+.++
T Consensus 11 ~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~--e~~~~a~~~ 88 (131)
T 2xjy_A 11 NIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY--EMTMRVKDK 88 (131)
T ss_dssp BCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTT--SEEEEETTE
T ss_pred EeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcc--ceeEeeCCc
Confidence 55555 578999999999999999999995 46799999999999999999999 999999999863 478899999
Q ss_pred cccccCcccCcCCCCC-CCCceEecCCceeCcccccccC
Q psy8131 160 HWHNDCFMCASCQSSL-VGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 160 ~~H~~Cf~C~~C~~~l-~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
.||++||+|..|+++| .++.|+..++++||..||.+++
T Consensus 89 ~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 89 VYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWT 127 (131)
T ss_dssp EEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHH
T ss_pred eECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHh
Confidence 9999999999999999 6888999999999999998765
No 3
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.96 E-value=4.4e-30 Score=195.79 Aligned_cols=133 Identities=23% Similarity=0.513 Sum_probs=114.4
Q ss_pred CCeecchhhHH---hhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccC-ceEeCCcCccccCCCCc
Q psy8131 31 EQEIYCANCYE---EKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSG-GVTYKNEPWHRECFTCS 106 (198)
Q Consensus 31 ~g~~yC~~cy~---~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~H~~CF~C~ 106 (198)
+++.||...+. ....++|.+|++ +|.+. .+.++|+.||++||+|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~-------------------------------~I~~~~~~~a~~~~wH~~CF~C~ 91 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQ-------------------------------HILDRFILKALDRHWHSKCLKCS 91 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSS-------------------------------BCCCSEEEEETTEEECSSTTSCT
T ss_pred ccccccccccccCCCCCCCcCccCCC-------------------------------CccCceeEEecCCeEccccCccC
Confidence 56788988875 445689999999 45544 46789999999999999
Q ss_pred cCcCCCCCCceeecCCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCC-CCceEe-cC
Q psy8131 107 NCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLV-GRGFIT-DG 184 (198)
Q Consensus 107 ~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~-~~ 184 (198)
.|+++|.+.. +.++|++||+.||.++|+++|.+|+++|.+. +.++.+.++.||++||+|..|+++|. |+.|+. .+
T Consensus 92 ~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~--~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~ 168 (182)
T 2jtn_A 92 DCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPT--QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMED 168 (182)
T ss_dssp TTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSS--CCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTT
T ss_pred CCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCC--ceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccC
Confidence 9999998776 4799999999999999999999999999873 35678999999999999999999995 677754 58
Q ss_pred CceeCcccccccC
Q psy8131 185 EDIICPDCAKAKL 197 (198)
Q Consensus 185 ~~~~C~~C~~~~~ 197 (198)
+++||..||.++.
T Consensus 169 g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 169 SRLVCKADYETAK 181 (182)
T ss_dssp SCEECHHHHHHHT
T ss_pred CEEECHHHHHHhh
Confidence 8999999998765
No 4
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.96 E-value=7e-30 Score=196.24 Aligned_cols=145 Identities=23% Similarity=0.528 Sum_probs=113.7
Q ss_pred ccCCcccCcCCcccCCCCCCCCCCCcccCCCeecchhhHHhhhccccccccccccccccc-cc-cc-----ccCCc-cc-
Q psy8131 2 EYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLREK-GT-FQ-----SHSGR-IN- 72 (198)
Q Consensus 2 ~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~-~~-~~-----~~~~~-~~- 72 (198)
.++|+.||++||+|..|+++|++..|+++||++||+.||.++|+|+|.+|+++...+..+ +. +. ++... .+
T Consensus 24 ~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~ 103 (192)
T 1b8t_A 24 QCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNP 103 (192)
T ss_dssp EETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred EeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCc
Confidence 478999999999999999999999999999999999999999999999998743211100 00 00 00000 00
Q ss_pred --ccc------eeeeeeeeeeec-cCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCCCCC
Q psy8131 73 --KVY------SILFYFLFQIIT-SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKK 143 (198)
Q Consensus 73 --~~~------~~~~~~~~~~i~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~ 143 (198)
..+ ...+..+.++|. +..|.++++.||++||+|+.|+++|.+..|+.+||++||+.||.++|+++|.+|++
T Consensus 104 ~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~ 183 (192)
T 1b8t_A 104 NASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQ 183 (192)
T ss_dssp CCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCC
T ss_pred CccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCC
Confidence 000 122445666776 45788999999999999999999998778999999999999999999999999999
Q ss_pred CCc
Q psy8131 144 PIT 146 (198)
Q Consensus 144 ~I~ 146 (198)
++-
T Consensus 184 ~~g 186 (192)
T 1b8t_A 184 GAG 186 (192)
T ss_dssp CCC
T ss_pred ccc
Confidence 963
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.96 E-value=1.2e-29 Score=194.35 Aligned_cols=112 Identities=21% Similarity=0.537 Sum_probs=100.9
Q ss_pred eeccC-ceEeCCcCccccCCCCccCcCCCCC--CceeecCCcccchhhHhhhhcc--CCCCCCCCCcCCCCceEEeeCCC
Q psy8131 85 IITSG-GVTYKNEPWHRECFTCSNCSTSLAG--QRFTSREDKPFCADCFGELFAK--RCYSCKKPITGIGGTRFISFEDR 159 (198)
Q Consensus 85 ~i~~~-~~~~~~~~~H~~CF~C~~C~~~l~~--~~~~~~~g~~yC~~c~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~ 159 (198)
+|.+. .+.++++.||++||+|+.|+++|.. ..|+.+||++||+.||.+++++ +|.+|+++|.+. +.++.+.++
T Consensus 14 ~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~--e~~i~a~~~ 91 (188)
T 1rut_X 14 KIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS--ELVMRAQGN 91 (188)
T ss_dssp BCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT--SEEEEETTE
T ss_pred EeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC--cEEEEcCCC
Confidence 45555 4789999999999999999999964 6799999999999999999999 799999999863 478899999
Q ss_pred cccccCcccCcCCCCC-CCCceEecCCceeCcccccccCC
Q psy8131 160 HWHNDCFMCASCQSSL-VGRGFITDGEDIICPDCAKAKLM 198 (198)
Q Consensus 160 ~~H~~Cf~C~~C~~~l-~~~~~~~~~~~~~C~~C~~~~~~ 198 (198)
.||++||+|..|+++| .++.|+..++++||..||.++++
T Consensus 92 ~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~ 131 (188)
T 1rut_X 92 VYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALI 131 (188)
T ss_dssp EECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC
T ss_pred EEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhc
Confidence 9999999999999999 57889999999999999998764
No 6
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.95 E-value=7.7e-29 Score=186.77 Aligned_cols=110 Identities=25% Similarity=0.571 Sum_probs=96.7
Q ss_pred eeccC-ceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccc
Q psy8131 85 IITSG-GVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHN 163 (198)
Q Consensus 85 ~i~~~-~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~ 163 (198)
+|.+. .+.++|+.||++||+|+.|+++|++.. +++||++||+.||.++|+++|++|+++|.+. +.++.+.++.||+
T Consensus 15 ~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~--~~v~~a~~~~~H~ 91 (169)
T 2rgt_A 15 HILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPT--QVVRRAQDFVYHL 91 (169)
T ss_dssp BCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTT--SEEEEETTEEEEG
T ss_pred ccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCC--cEEEEcCCceEee
Confidence 44444 467899999999999999999998875 5899999999999999999999999999873 4677899999999
Q ss_pred cCcccCcCCCCCC-CCceEe-cCCceeCcccccccC
Q psy8131 164 DCFMCASCQSSLV-GRGFIT-DGEDIICPDCAKAKL 197 (198)
Q Consensus 164 ~Cf~C~~C~~~l~-~~~~~~-~~~~~~C~~C~~~~~ 197 (198)
+||+|..|+++|. |+.|+. .++++||..||.+++
T Consensus 92 ~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 92 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127 (169)
T ss_dssp GGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHh
Confidence 9999999999995 777754 688999999998764
No 7
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.95 E-value=1.3e-28 Score=189.12 Aligned_cols=107 Identities=23% Similarity=0.688 Sum_probs=97.7
Q ss_pred cCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccC------------------------------
Q psy8131 88 SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKR------------------------------ 137 (198)
Q Consensus 88 ~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~------------------------------ 137 (198)
+..+.++|+.||++||+|..|+++|.+..|+++||++||+.||.++|+++
T Consensus 20 ~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~ 99 (192)
T 1b8t_A 20 AEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHR 99 (192)
T ss_dssp SCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred eeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccC
Confidence 55678999999999999999999998888999999999999999999886
Q ss_pred ------------------CCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 138 ------------------CYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 138 ------------------C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
|++|+++|.+. ..|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 100 p~~~~~~~~~~~~~~~~~C~~C~~~I~~~---~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f 174 (192)
T 1b8t_A 100 PTNPNASRMAQKVGGSDGCPRCGQAVYAA---EKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF 174 (192)
T ss_dssp CCCCCCCCCCCCCCCCEECTTTSCEECSS---SCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHT
T ss_pred CCCcCccccccccCCCCcCCCCCCEecCc---EEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhc
Confidence 77899999863 4567999999999999999999998888999999999999998875
No 8
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=176.75 Aligned_cols=103 Identities=32% Similarity=0.719 Sum_probs=94.9
Q ss_pred CccCCcccCcCCcccCCCCCCCCCCCcccCCCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeee
Q psy8131 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFY 80 (198)
Q Consensus 1 ~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (198)
|.++|+.||++||+|+.|+++|++..|+++||++||+.||.++++|+|.+|+++
T Consensus 19 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~-------------------------- 72 (126)
T 2xqn_T 19 TQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNA-------------------------- 72 (126)
T ss_dssp EEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSB--------------------------
T ss_pred EeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCc--------------------------
Confidence 357899999999999999999999999999999999999999999999999995
Q ss_pred eeeeeec--cCceEeCCcCcc--ccCCCCccCcCCCCCCceeecCCcccchhhHhhhh
Q psy8131 81 FLFQIIT--SGGVTYKNEPWH--RECFTCSNCSTSLAGQRFTSREDKPFCADCFGELF 134 (198)
Q Consensus 81 ~~~~~i~--~~~~~~~~~~~H--~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~ 134 (198)
|. +..|+++++.|| ++||+|..|+++|.++.|++++|++||..+|.++|
T Consensus 73 -----I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 73 -----IDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp -----CCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred -----CCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 44 456889999999 99999999999999888999999999998887765
No 9
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.94 E-value=2.2e-28 Score=176.88 Aligned_cols=105 Identities=24% Similarity=0.583 Sum_probs=94.7
Q ss_pred CccCCcccCcCCcccCCCCCCCC--CCCcccCCCeecchhhHHhhhcc--cccccccccccccccccccccCCcccccce
Q psy8131 1 MEYKTRQWHEKCFACVVCKTPIG--TKSFIPREQEIYCANCYEEKFAT--RCVKCNKTFFRLREKGTFQSHSGRINKVYS 76 (198)
Q Consensus 1 ~~~~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (198)
|.++|+.||++||+|+.|+++|+ +..|+++||++||+.||.+++++ +|.+|++
T Consensus 18 ~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~----------------------- 74 (131)
T 2xjy_A 18 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDK----------------------- 74 (131)
T ss_dssp EEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCC-----------------------
T ss_pred EEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCC-----------------------
Confidence 35789999999999999999996 46899999999999999999999 9999999
Q ss_pred eeeeeeeeeecc--CceEeCCcCccccCCCCccCcCCC-CCCceeecCCcccchhhHhhhhcc
Q psy8131 77 ILFYFLFQIITS--GGVTYKNEPWHRECFTCSNCSTSL-AGQRFTSREDKPFCADCFGELFAK 136 (198)
Q Consensus 77 ~~~~~~~~~i~~--~~~~~~~~~~H~~CF~C~~C~~~l-~~~~~~~~~g~~yC~~c~~~~~~~ 136 (198)
+|.+ ..+.+.++.||++||+|..|+++| .+..|++.++++||..||.+++++
T Consensus 75 --------~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 75 --------RIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp --------EECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred --------ccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 4443 467899999999999999999999 577799999999999999988764
No 10
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.94 E-value=4.1e-28 Score=185.80 Aligned_cols=137 Identities=21% Similarity=0.447 Sum_probs=104.2
Q ss_pred CccCCcccCcCCcccCCCCCCCCC--CCcccCCCeecchhhHHhhhcc--cccccccccccccccccccccCCcccccce
Q psy8131 1 MEYKTRQWHEKCFACVVCKTPIGT--KSFIPREQEIYCANCYEEKFAT--RCVKCNKTFFRLREKGTFQSHSGRINKVYS 76 (198)
Q Consensus 1 ~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (198)
|.++|+.||++||+|..|+++|.+ ..|++++|++||+.||.+++++ +|.+|+++
T Consensus 21 ~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~---------------------- 78 (188)
T 1rut_X 21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQS---------------------- 78 (188)
T ss_dssp EEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCE----------------------
T ss_pred EEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCc----------------------
Confidence 357899999999999999999985 7899999999999999999999 79999994
Q ss_pred eeeeeeeeeecc--CceEeCCcCccccCCCCccCcCCCC-CCceeecCCcccchhhHhhhhccCCCCCCCCCc---CCCC
Q psy8131 77 ILFYFLFQIITS--GGVTYKNEPWHRECFTCSNCSTSLA-GQRFTSREDKPFCADCFGELFAKRCYSCKKPIT---GIGG 150 (198)
Q Consensus 77 ~~~~~~~~~i~~--~~~~~~~~~~H~~CF~C~~C~~~l~-~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~---~~~~ 150 (198)
|.+ ..+.+.++.||++||+|..|+++|. +..|+..++++||..||.++++++|...+..-. ...+
T Consensus 79 ---------I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~~~~~~~~~~~ 149 (188)
T 1rut_X 79 ---------IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSGGD 149 (188)
T ss_dssp ---------ECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC----------------CC
T ss_pred ---------cccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCCCCcccccCCc
Confidence 443 3567999999999999999999995 667999999999999999999999987765211 1000
Q ss_pred ceE---EeeCCCcccccCccc
Q psy8131 151 TRF---ISFEDRHWHNDCFMC 168 (198)
Q Consensus 151 ~~~---~~~~~~~~H~~Cf~C 168 (198)
..+ ....+..+|++..+.
T Consensus 150 v~vvgep~l~g~~~~~~~~r~ 170 (188)
T 1rut_X 150 VMVVGEPTLMGGEFGDEDERL 170 (188)
T ss_dssp CEECCCCEETTCCCCCTTEEE
T ss_pred ccccCCCcccCCCCCCCCCce
Confidence 011 245566777766654
No 11
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.94 E-value=6.5e-27 Score=176.23 Aligned_cols=128 Identities=23% Similarity=0.532 Sum_probs=100.7
Q ss_pred ccCCcccCcCCcccCCCCCCCCCCCcccCCCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeee
Q psy8131 2 EYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYF 81 (198)
Q Consensus 2 ~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (198)
.++|+.||++||+|..|+++|++..| ++||++||+.||.++|+++|.+|+++
T Consensus 23 ~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~--------------------------- 74 (169)
T 2rgt_A 23 KALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLG--------------------------- 74 (169)
T ss_dssp ECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCB---------------------------
T ss_pred EECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccc---------------------------
Confidence 57899999999999999999998775 79999999999999999999999995
Q ss_pred eeeeeccC--ceEeCCcCccccCCCCccCcCCCC-CCcee-ecCCcccchhhHhhhhccCCC--CCCCCCcCCCCceEEe
Q psy8131 82 LFQIITSG--GVTYKNEPWHRECFTCSNCSTSLA-GQRFT-SREDKPFCADCFGELFAKRCY--SCKKPITGIGGTRFIS 155 (198)
Q Consensus 82 ~~~~i~~~--~~~~~~~~~H~~CF~C~~C~~~l~-~~~~~-~~~g~~yC~~c~~~~~~~~C~--~C~~~I~~~~~~~~~~ 155 (198)
|.+. .+.+.++.||++||+|..|+++|. +..|+ ..||++||..||.+++...+. +.+++.+ .++
T Consensus 75 ----I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~~~~~~rprt------~~~ 144 (169)
T 2rgt_A 75 ----IPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGGT------PMV 144 (169)
T ss_dssp ----CCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC----------E------EEE
T ss_pred ----cCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCCCCCCcCCCC------ccc
Confidence 3332 457899999999999999999996 55565 468999999999988876543 3333332 355
Q ss_pred eCCCcccccCcc
Q psy8131 156 FEDRHWHNDCFM 167 (198)
Q Consensus 156 ~~~~~~H~~Cf~ 167 (198)
+.....|...|.
T Consensus 145 ~~q~~~l~~~f~ 156 (169)
T 2rgt_A 145 AASPERHDGGLQ 156 (169)
T ss_dssp CCCCEECCSSCC
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 12
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.93 E-value=7.8e-27 Score=161.37 Aligned_cols=83 Identities=34% Similarity=0.801 Sum_probs=77.4
Q ss_pred cCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcc
Q psy8131 88 SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFM 167 (198)
Q Consensus 88 ~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~ 167 (198)
+..+.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++++++|++|+++|.+ ++.+|+++++.||++||+
T Consensus 19 ~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~--~~~~~~a~~~~~H~~CF~ 96 (101)
T 2cup_A 19 SKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVA--GDQNVEYKGTVWHKDCFS 96 (101)
T ss_dssp SCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCS--SSCEEESSSCEEETTTCC
T ss_pred ceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcccc--CCeEEEeCCcchHHhCCC
Confidence 567789999999999999999999988889999999999999999999999999999985 247899999999999999
Q ss_pred cCcCC
Q psy8131 168 CASCQ 172 (198)
Q Consensus 168 C~~C~ 172 (198)
|..|+
T Consensus 97 C~~C~ 101 (101)
T 2cup_A 97 GPSSG 101 (101)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 99986
No 13
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.92 E-value=8.5e-26 Score=172.04 Aligned_cols=102 Identities=26% Similarity=0.684 Sum_probs=88.2
Q ss_pred ccCCcccCcCCcccCCCCCCCCCCCcccCCCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeee
Q psy8131 2 EYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYF 81 (198)
Q Consensus 2 ~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (198)
.++|+.||++||+|..|+++|.+..| +++|++||+.||.++|+|+|.+|+++|.
T Consensus 77 ~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~------------------------- 130 (182)
T 2jtn_A 77 KALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP------------------------- 130 (182)
T ss_dssp EETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCC-------------------------
T ss_pred EecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccC-------------------------
Confidence 57899999999999999999998776 7999999999999999999999999531
Q ss_pred eeeeeccCceEeCCcCccccCCCCccCcCCCC-CCcee-ecCCcccchhhHhhh
Q psy8131 82 LFQIITSGGVTYKNEPWHRECFTCSNCSTSLA-GQRFT-SREDKPFCADCFGEL 133 (198)
Q Consensus 82 ~~~~i~~~~~~~~~~~~H~~CF~C~~C~~~l~-~~~~~-~~~g~~yC~~c~~~~ 133 (198)
.....+.+.++.||++||+|..|+++|. +..|+ ..+|++||..||.++
T Consensus 131 ----~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 131 ----PTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp ----SSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred ----CCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 1122457899999999999999999996 45565 568999999999765
No 14
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.89 E-value=4.6e-24 Score=152.34 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=83.6
Q ss_pred eeccC-ceEeCCcCccccCCCCccCcCCCC--CCceeecCCcccchhhHhhhhcc--CCCCCCCCCcCCCCceEEeeCCC
Q psy8131 85 IITSG-GVTYKNEPWHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFAK--RCYSCKKPITGIGGTRFISFEDR 159 (198)
Q Consensus 85 ~i~~~-~~~~~~~~~H~~CF~C~~C~~~l~--~~~~~~~~g~~yC~~c~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~ 159 (198)
+|.+. .++++++.||++||+|+.|+++|. +..|+.++|++||+.||.++|++ +|++|+++|.+ ..+++.++
T Consensus 14 ~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~----~~~~~~g~ 89 (122)
T 1m3v_A 14 KIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG----GDVMVVGE 89 (122)
T ss_dssp CCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC----EESSSSSS
T ss_pred EeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc----hheEEcCC
Confidence 45555 478999999999999999999996 35699999999999999999999 99999999997 33455553
Q ss_pred cccccCcccCcCCCCCCCCceEecCCceeCcccccccCC
Q psy8131 160 HWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKLM 198 (198)
Q Consensus 160 ~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~~ 198 (198)
.+|.|+.|+..+++|||..|+.++++
T Consensus 90 -------------~~l~g~~f~~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 90 -------------PTLMGGEFGDEDERLITRLENTQFDA 115 (122)
T ss_dssp -------------SSCCSCTTCCTTCCCCEECTTTTTTC
T ss_pred -------------cCCCCCccEecCCEeEccCcchhchh
Confidence 36789999999999999999988764
No 15
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.88 E-value=1.7e-23 Score=144.57 Aligned_cols=78 Identities=32% Similarity=0.926 Sum_probs=71.8
Q ss_pred CccCCcccCcCCcccCCCCCCCCCCCcccCCCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeee
Q psy8131 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFY 80 (198)
Q Consensus 1 ~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (198)
|.++|+.||++||+|..|+++|.+..|++++|++||+.||.++++|+|.+|+++
T Consensus 22 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~-------------------------- 75 (101)
T 2cup_A 22 VHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKA-------------------------- 75 (101)
T ss_dssp EEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCB--------------------------
T ss_pred EEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCc--------------------------
Confidence 357899999999999999999999999999999999999999999999999994
Q ss_pred eeeeeec--cCceEeCCcCccccCCCCccCc
Q psy8131 81 FLFQIIT--SGGVTYKNEPWHRECFTCSNCS 109 (198)
Q Consensus 81 ~~~~~i~--~~~~~~~~~~~H~~CF~C~~C~ 109 (198)
|. +..|+++|+.||++||+|+.|+
T Consensus 76 -----I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 76 -----IVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp -----CCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred -----cccCCeEEEeCCcchHHhCCCCCCCC
Confidence 44 4578899999999999999985
No 16
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.85 E-value=2.7e-22 Score=132.73 Aligned_cols=79 Identities=23% Similarity=0.500 Sum_probs=73.6
Q ss_pred CCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcC
Q psy8131 31 EQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCST 110 (198)
Q Consensus 31 ~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~ 110 (198)
+|++||++||.++++++|.+|++ +|.+..|.++++.||++||+|+.|++
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~-------------------------------~I~~~~v~a~~~~~H~~CF~C~~C~~ 49 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNR-------------------------------PVLENYLSAMDTVWHPECFVCGDCFT 49 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCC-------------------------------BCCSSCEEETTEEECTTTCBCSSSCC
T ss_pred CCCccchhHHhhhcCCccccCCC-------------------------------eecceeEEECCCeEecCcCChhhCCC
Confidence 58999999999999999999999 55567889999999999999999999
Q ss_pred CCCCCceeecCCcccchhhHhhhhccCCCC
Q psy8131 111 SLAGQRFTSREDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 111 ~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~ 140 (198)
+|.+..|+.+++++||+.||.++|+++|++
T Consensus 50 ~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 50 SFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp BSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 998878999999999999999999999974
No 17
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.85 E-value=2.7e-22 Score=132.75 Aligned_cols=79 Identities=54% Similarity=1.188 Sum_probs=73.5
Q ss_pred CCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcC
Q psy8131 31 EQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCST 110 (198)
Q Consensus 31 ~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~ 110 (198)
+|++||++||.++++++|.+|++ +|.+..|.++++.||++||+|+.|++
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~-------------------------------~I~~~~v~a~~~~~H~~CF~C~~C~~ 49 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSK-------------------------------TLTQGGVTYRDQPWHRECLVCTGCQT 49 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCC-------------------------------CCCSCCEESSSSEECTTTCBCSSSCC
T ss_pred CCcEEcHHHHccccCCcCCCCCC-------------------------------EecCcEEEECCchhhhhhCCcccCCC
Confidence 68999999999999999999999 55566788999999999999999999
Q ss_pred CCCCCceeecCCcccchhhHhhhhccCCCC
Q psy8131 111 SLAGQRFTSREDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 111 ~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~ 140 (198)
+|.+..|+++++++||+.||.++|+++|+.
T Consensus 50 ~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 50 PLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp BCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred cCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 998888999999999999999999999974
No 18
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-22 Score=134.27 Aligned_cols=81 Identities=28% Similarity=0.677 Sum_probs=72.7
Q ss_pred CCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcC
Q psy8131 31 EQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCST 110 (198)
Q Consensus 31 ~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~ 110 (198)
||++||++||.++++++|.+|+++|. ..+..+.++++.||++||+|+.|++
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~-----------------------------~~~~~~~a~~~~~H~~CF~C~~C~~ 51 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIG-----------------------------HDSRELFYEDRHFHEGCFRCCRCQR 51 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCC-----------------------------SSCCBCCCSSCCCBTTTSBCTTTCC
T ss_pred CCceechhHhCcccCCcCccCCCccc-----------------------------cCcEEEEeCCccccccCCeecCCCC
Confidence 68999999999999999999999531 1255677899999999999999999
Q ss_pred CCCCCceeecCCcccchhhHhhhhccCCCC
Q psy8131 111 SLAGQRFTSREDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 111 ~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~ 140 (198)
+|.+..|+++++++||+.||.++++++|++
T Consensus 52 ~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 52 SLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp BCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred ccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 999888999999999999999999999974
No 19
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=1.7e-21 Score=129.21 Aligned_cols=78 Identities=26% Similarity=0.492 Sum_probs=71.3
Q ss_pred CCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcC
Q psy8131 31 EQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCST 110 (198)
Q Consensus 31 ~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~ 110 (198)
||++||++||. +++++|.+|++ +|.+..+.++++.||++||+|+.|++
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~-------------------------------~I~~~~~~a~~~~~H~~CF~C~~C~~ 49 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQ-------------------------------PILDRILRAMGKAYHPGCFTCVVCHR 49 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCC-------------------------------BCCSCCEEETTEEECTTTCBCSSSCC
T ss_pred cCCEECHHHhh-cCCCccccCCC-------------------------------eecceeEEECCccccHHhcCcccCCC
Confidence 78999999999 78999999999 55567888999999999999999999
Q ss_pred CCCCCceeec-CCcccchhhHhhhhccCCCC
Q psy8131 111 SLAGQRFTSR-EDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 111 ~l~~~~~~~~-~g~~yC~~c~~~~~~~~C~~ 140 (198)
+|.+..|+.. +|++||+.||.++|+++|++
T Consensus 50 ~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 50 GLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp BCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred ccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 9988878876 79999999999999999974
No 20
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=6.7e-21 Score=134.34 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=76.2
Q ss_pred eeccC-ceEeCCcCccccCCCCccCcCCCCC--CceeecCCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcc
Q psy8131 85 IITSG-GVTYKNEPWHRECFTCSNCSTSLAG--QRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHW 161 (198)
Q Consensus 85 ~i~~~-~~~~~~~~~H~~CF~C~~C~~~l~~--~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~ 161 (198)
+|.+. .+.++++.||++||+|+.|+++|.+ ..|+.+||++||+.||.++|+++|..|.. + .++.
T Consensus 12 ~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~----~~~~------ 78 (114)
T 1j2o_A 12 NIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---G----DVMV------ 78 (114)
T ss_dssp CBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---C----SCCC------
T ss_pred eeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---C----ceeE------
Confidence 45555 6789999999999999999999974 57999999999999999999999998862 2 2232
Q ss_pred cccCcccCcCCCC-CCCCceEecCCceeCcccccccC
Q psy8131 162 HNDCFMCASCQSS-LVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 162 H~~Cf~C~~C~~~-l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
|+.+ |.|+.|+..+++|||..|+.++.
T Consensus 79 ---------~~~~~~~g~~f~~~~~~~~C~~~~~~~~ 106 (114)
T 1j2o_A 79 ---------VGEPTLMGGEFGDEDERLITRLENTQFD 106 (114)
T ss_dssp ---------SSCSSTTSSBCCCSSSCCCEEEECTTCC
T ss_pred ---------cCCccCCCCeeEEcCCEeecchhhhccc
Confidence 3344 58999999999999999998865
No 21
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=7.6e-21 Score=126.27 Aligned_cols=78 Identities=28% Similarity=0.656 Sum_probs=71.4
Q ss_pred CCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeec--cCceEeCCcCccccCCCCccC
Q psy8131 31 EQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIIT--SGGVTYKNEPWHRECFTCSNC 108 (198)
Q Consensus 31 ~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~H~~CF~C~~C 108 (198)
++.+||++||.++++++|.+|+++ |. +..+.++++.||++||+|..|
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~-------------------------------I~~~~~~~~a~~~~~H~~CF~C~~C 49 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKA-------------------------------IVAGDQNVEYKGTVWHKDCFTCSNC 49 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCB-------------------------------CCSSSCEEECSSCEEETTTCCCSSS
T ss_pred CCCcCchhHHccccCCcCccCCcc-------------------------------cccCceEEEECccccccccCchhhC
Confidence 578999999999999999999994 44 456889999999999999999
Q ss_pred cCCCCCCceeecCCcccchhhHhhhhccCCC
Q psy8131 109 STSLAGQRFTSREDKPFCADCFGELFAKRCY 139 (198)
Q Consensus 109 ~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~ 139 (198)
+++|.+..|+++++++||+.||.++|++++.
T Consensus 50 ~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 50 KQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 9999888899999999999999999999885
No 22
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-20 Score=123.57 Aligned_cols=76 Identities=38% Similarity=0.972 Sum_probs=68.5
Q ss_pred CCcccchhhHhhhhccCCCCCCCCCcCCC-CceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCccccccc
Q psy8131 121 EDKPFCADCFGELFAKRCYSCKKPITGIG-GTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAK 196 (198)
Q Consensus 121 ~g~~yC~~c~~~~~~~~C~~C~~~I~~~~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~ 196 (198)
++++||++||.++++++|++|+++|.+.+ ...++.+.++.||++||+|..|+++|.++.|+..++++||..||.++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 47899999999999999999999999521 23788999999999999999999999988999999999999999764
No 23
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-20 Score=125.09 Aligned_cols=75 Identities=31% Similarity=0.754 Sum_probs=69.5
Q ss_pred CCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 121 EDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 121 ~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
+|++||++||.++++++|++|+++|.+ ++.++.+.++.||++||+|+.|+++|.++.|+..++++||..||.+++
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~--~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~ 75 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGH--DSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAF 75 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCS--SCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCG
T ss_pred CCceechhHhCcccCCcCccCCCcccc--CcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhc
Confidence 589999999999999999999999984 237889999999999999999999999889999999999999998875
No 24
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=4.2e-21 Score=136.96 Aligned_cols=90 Identities=20% Similarity=0.382 Sum_probs=76.7
Q ss_pred CccCCcccCcCCcccCCCCCCCC--CCCcccCCCeecchhhHHhhhcc--cccccccccccccccccccccCCcccccce
Q psy8131 1 MEYKTRQWHEKCFACVVCKTPIG--TKSFIPREQEIYCANCYEEKFAT--RCVKCNKTFFRLREKGTFQSHSGRINKVYS 76 (198)
Q Consensus 1 ~~~~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (198)
|.++++.||++||+|+.|+++|+ +..|++++|++||+.||.++|+| +|.+|++
T Consensus 21 ~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~----------------------- 77 (122)
T 1m3v_A 21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGH----------------------- 77 (122)
T ss_dssp EEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSC-----------------------
T ss_pred EEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCC-----------------------
Confidence 35789999999999999999997 36899999999999999999999 9999999
Q ss_pred eeeeeeeeeeccCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhh
Q psy8131 77 ILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELF 134 (198)
Q Consensus 77 ~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~ 134 (198)
+|.+..+++.|+ .+|.++.|+++++++||..|+.+++
T Consensus 78 --------~I~~~~~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 78 --------MGSGGDVMVVGE-------------PTLMGGEFGDEDERLITRLENTQFD 114 (122)
T ss_dssp --------CSCCEESSSSSS-------------SSCCSCTTCCTTCCCCEECTTTTTT
T ss_pred --------CcCchheEEcCC-------------cCCCCCccEecCCEeEccCcchhch
Confidence 444444445443 3678888999999999999997764
No 25
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=2.6e-20 Score=123.43 Aligned_cols=79 Identities=20% Similarity=0.488 Sum_probs=70.5
Q ss_pred CCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcC
Q psy8131 31 EQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCST 110 (198)
Q Consensus 31 ~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~ 110 (198)
++.+||++||.++++++|.+|++ +|.+..+.++++.||++||+|..|++
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~-------------------------------~I~~~~~~a~~~~~H~~CF~C~~C~~ 49 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSL-------------------------------LMTGPFMVAGEFKYHPECFACMSCKV 49 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCC-------------------------------BCCSCCBCCTTCCBCTTSCBCTTTCC
T ss_pred CCCccchhHHhhhcCCcCccCCC-------------------------------CcCceEEEECCceeccccCCccCCCC
Confidence 47899999999999999999999 45577788999999999999999999
Q ss_pred CCC-CCcee-ecCCcccchhhHhhhhccCCCC
Q psy8131 111 SLA-GQRFT-SREDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 111 ~l~-~~~~~-~~~g~~yC~~c~~~~~~~~C~~ 140 (198)
+|. +..|. ++++++||+.||.+++++.+++
T Consensus 50 ~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 50 IIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp BCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred ccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence 995 46677 5899999999999999988764
No 26
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=2e-20 Score=123.64 Aligned_cols=73 Identities=30% Similarity=0.771 Sum_probs=68.5
Q ss_pred CCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 121 EDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 121 ~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
+|++||++||.++++++|++|+++|.+ .+|.+.++.||++||+|..|+++|.++.|+..++++||..||.+++
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~----~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQ----GGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCS----CCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHT
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecC----cEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHc
Confidence 589999999999999999999999987 4688999999999999999999998889999999999999998875
No 27
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.8e-20 Score=121.38 Aligned_cols=76 Identities=29% Similarity=0.740 Sum_probs=64.8
Q ss_pred CCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcC
Q psy8131 31 EQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCST 110 (198)
Q Consensus 31 ~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~ 110 (198)
++++||++||.++++++|.+|+++|...+ .....+.++++.||++||+|+.|++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g--------------------------~~~~~~~a~~~~~H~~CF~C~~C~~ 54 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFG--------------------------KGSSVVAYEGQSWHDYCFHCKKCSV 54 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCS--------------------------SCCCEEEETTEEEETTTCBCSSSCC
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCC--------------------------CCceeEEECcceeCcccCEehhcCC
Confidence 57899999999999999999999531000 0125778999999999999999999
Q ss_pred CCCCCceeecCCcccchhhHhh
Q psy8131 111 SLAGQRFTSREDKPFCADCFGE 132 (198)
Q Consensus 111 ~l~~~~~~~~~g~~yC~~c~~~ 132 (198)
+|.+..|+++++++||+.||.+
T Consensus 55 ~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 55 NLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp BCTTSCCCEETTEECCHHHHHH
T ss_pred CCCCCccEeECCEEEChHHhcc
Confidence 9988889999999999999965
No 28
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=3.5e-20 Score=122.45 Aligned_cols=73 Identities=22% Similarity=0.551 Sum_probs=68.0
Q ss_pred CCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 121 EDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 121 ~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
+|++||++||.++++++|++|+++|.+ ++|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~----~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLE----NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCS----SCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred CCCccchhHHhhhcCCccccCCCeecc----eeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHc
Confidence 478999999999999999999999997 5689999999999999999999998878999999999999998765
No 29
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=5.3e-20 Score=122.13 Aligned_cols=75 Identities=27% Similarity=0.701 Sum_probs=69.2
Q ss_pred CCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 121 EDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 121 ~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
++.+||++||.++++++|++|+++|.+ ++.+|.+.++.||++||+|..|+++|.+..|+..++.+||..||.+++
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~--~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 75 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVA--GDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 75 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCS--SSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHT
T ss_pred CCCcCchhHHccccCCcCccCCccccc--CceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHh
Confidence 468999999999999999999999986 247899999999999999999999998889999999999999998876
No 30
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.3e-19 Score=120.05 Aligned_cols=72 Identities=25% Similarity=0.588 Sum_probs=66.4
Q ss_pred CCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEec-CCceeCcccccccC
Q psy8131 121 EDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITD-GEDIICPDCAKAKL 197 (198)
Q Consensus 121 ~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~C~~C~~~~~ 197 (198)
||++||++||. +++++|++|+++|.+ ++|.+.++.||++||+|+.|+++|.++.|... ++++||..||.+++
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f 74 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILD----RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF 74 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCS----CCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHT
T ss_pred cCCEECHHHhh-cCCCccccCCCeecc----eeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHh
Confidence 68999999998 799999999999986 57899999999999999999999998888876 78999999998875
No 31
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.7e-19 Score=119.38 Aligned_cols=73 Identities=21% Similarity=0.536 Sum_probs=66.2
Q ss_pred CCcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCC-CCceEe-cCCceeCcccccccC
Q psy8131 121 EDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLV-GRGFIT-DGEDIICPDCAKAKL 197 (198)
Q Consensus 121 ~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~-~~~~~~C~~C~~~~~ 197 (198)
++.+||++||.++++++|++|+++|.+ .+|.+.++.||++||+|..|+++|. ++.|.+ .++++||..||.+++
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTG----PFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCS----CCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCc----eEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 368999999999999999999999995 6789999999999999999999994 677874 899999999998765
No 32
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=1.6e-18 Score=114.69 Aligned_cols=72 Identities=26% Similarity=0.670 Sum_probs=63.2
Q ss_pred CcccchhhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCC-CCceEecCCceeCcccccccC
Q psy8131 122 DKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLV-GRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 122 g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~C~~~~~ 197 (198)
+.+||+.||.++++++|++|+++|.+ ++|.+.++.||++||+|..|+++|. +..+..+++.+||..|+.+++
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~----~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEG----EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCS----CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred CCCcchHHHHhHhCCcCccccCEecc----ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 57899999999999999999999986 6789999999999999999999996 445555565679999998765
No 33
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=2e-18 Score=121.53 Aligned_cols=85 Identities=14% Similarity=0.296 Sum_probs=70.8
Q ss_pred CccCCcccCcCCcccCCCCCCCCC--CCcccCCCeecchhhHHhhhcccccccccccccccccccccccCCcccccceee
Q psy8131 1 MEYKTRQWHEKCFACVVCKTPIGT--KSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSIL 78 (198)
Q Consensus 1 ~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (198)
|.++|+.||++||+|+.|+++|++ ..|+++||++||+.||.++|+|+|..|....
T Consensus 19 ~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~~----------------------- 75 (114)
T 1j2o_A 19 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGD----------------------- 75 (114)
T ss_dssp EECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSCS-----------------------
T ss_pred EEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCCc-----------------------
Confidence 457899999999999999999985 6899999999999999999999998876410
Q ss_pred eeeeeeeeccCceEeCCcCccccCCCCccCcCC-CCCCceeecCCcccchhhHhhhh
Q psy8131 79 FYFLFQIITSGGVTYKNEPWHRECFTCSNCSTS-LAGQRFTSREDKPFCADCFGELF 134 (198)
Q Consensus 79 ~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~~-l~~~~~~~~~g~~yC~~c~~~~~ 134 (198)
+|. |+++ |.++.|+++++++||..|+.++.
T Consensus 76 ------~~~--------------------~~~~~~~g~~f~~~~~~~~C~~~~~~~~ 106 (114)
T 1j2o_A 76 ------VMV--------------------VGEPTLMGGEFGDEDERLITRLENTQFD 106 (114)
T ss_dssp ------CCC--------------------SSCSSTTSSBCCCSSSCCCEEEECTTCC
T ss_pred ------eeE--------------------cCCccCCCCeeEEcCCEeecchhhhccc
Confidence 221 2344 57888999999999999987654
No 34
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=5.7e-18 Score=110.71 Aligned_cols=63 Identities=24% Similarity=0.663 Sum_probs=56.4
Q ss_pred eec-cCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccch-hhHhhhhccCCCCCCCCCcC
Q psy8131 85 IIT-SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCA-DCFGELFAKRCYSCKKPITG 147 (198)
Q Consensus 85 ~i~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~-~c~~~~~~~~C~~C~~~I~~ 147 (198)
+|. +..+.++|+.||++||+|..|+++|.+..|+++||++||+ .||.++|+++|++|++++..
T Consensus 9 ~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~~ 73 (76)
T 1iml_A 9 EVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAESH 73 (76)
T ss_dssp BCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSSC
T ss_pred EEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCceee
Confidence 444 5678899999999999999999999888899999999999 69999999999999987653
No 35
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=2.3e-18 Score=112.58 Aligned_cols=70 Identities=29% Similarity=0.702 Sum_probs=63.5
Q ss_pred hhhcccccccccccccccccccccccCCcccccceeeeeeeeeeecc----CceEeCCcCccccCCCCccCcCCCCCCce
Q psy8131 42 EKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITS----GGVTYKNEPWHRECFTCSNCSTSLAGQRF 117 (198)
Q Consensus 42 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~H~~CF~C~~C~~~l~~~~~ 117 (198)
++++++|.+|+++ |.+ ..+.++++.||++||+|+.|+++|.+..|
T Consensus 2 ~~~~~~C~~C~~~-------------------------------I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f 50 (76)
T 1x68_A 2 SSGSSGCVACSKP-------------------------------ISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGF 50 (76)
T ss_dssp TTCCCCCTTTCCC-------------------------------CCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCE
T ss_pred CccCCCCccCCCc-------------------------------ccCCCCceeEEECCcccCcccCChhhCCCcCCCCce
Confidence 4689999999995 443 67889999999999999999999998889
Q ss_pred eecCCcccchhhHhhhhccCCCCCC
Q psy8131 118 TSREDKPFCADCFGELFAKRCYSCK 142 (198)
Q Consensus 118 ~~~~g~~yC~~c~~~~~~~~C~~C~ 142 (198)
+++++++||+.||.++|+++|+.++
T Consensus 51 ~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 51 LTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp EEETTEEEETTTTCCCCCCSSSSSC
T ss_pred EeECCEEECHHHhhhhhCCcCCCCC
Confidence 9999999999999999999999875
No 36
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.4e-17 Score=112.40 Aligned_cols=75 Identities=24% Similarity=0.532 Sum_probs=66.2
Q ss_pred cchhhHHhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcCCCCC
Q psy8131 35 YCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLAG 114 (198)
Q Consensus 35 yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~ 114 (198)
..+..+...++++|.+|++ +|.+..|.++++.||++||+|..|+++|.+
T Consensus 15 ~~~~~~~~~~~~~C~~C~~-------------------------------~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~ 63 (90)
T 2dar_A 15 RAEHIPAGKRTPMCAHCNQ-------------------------------VIRGPFLVALGKSWHPEEFNCAHCKNTMAY 63 (90)
T ss_dssp CCEEECTTTCCCBBSSSCC-------------------------------BCCSCEEEETTEEECTTTCBCSSSCCBCSS
T ss_pred hcccCCCCCCCCCCccCCC-------------------------------EecceEEEECCccccccCCccCCCCCCCCC
Confidence 3444466778999999999 566778889999999999999999999988
Q ss_pred CceeecCCcccchhhHhhhhccCCCC
Q psy8131 115 QRFTSREDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 115 ~~~~~~~g~~yC~~c~~~~~~~~C~~ 140 (198)
..|+++++++||+.||.++|+++|+.
T Consensus 64 ~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 64 IGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp SCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CEeEeECCEEECHHHHHHHcCCCCCC
Confidence 88999999999999999999999974
No 37
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=8.8e-18 Score=108.01 Aligned_cols=67 Identities=49% Similarity=1.125 Sum_probs=60.9
Q ss_pred hhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcCCCCCCceeecCC
Q psy8131 43 KFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSRED 122 (198)
Q Consensus 43 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g 122 (198)
+++++|.+|++ +|.+..+.++++.||++||+|..|+++|.+..|+++++
T Consensus 3 ~~~~~C~~C~~-------------------------------~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~ 51 (70)
T 2d8z_A 3 SGSSGCVQCKK-------------------------------PITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDD 51 (70)
T ss_dssp CCCCBCSSSCC-------------------------------BCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSS
T ss_pred CCCCCCcccCC-------------------------------eeccceEEECccccCCCCCccCCCCCcCCcCceEeeCC
Confidence 46789999999 55566788999999999999999999998888999999
Q ss_pred cccchhhHhhhhccCCCC
Q psy8131 123 KPFCADCFGELFAKRCYS 140 (198)
Q Consensus 123 ~~yC~~c~~~~~~~~C~~ 140 (198)
++||+.||.++|+++|++
T Consensus 52 ~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 52 FAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp SEECHHHHHHHTCCCCTT
T ss_pred eEECHHHHHHHhccccCC
Confidence 999999999999999974
No 38
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.2e-17 Score=107.07 Aligned_cols=56 Identities=48% Similarity=1.109 Sum_probs=51.6
Q ss_pred eeccCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCC
Q psy8131 85 IITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 85 ~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~ 140 (198)
+|.+..|.++++.||++||+|+.|+++|.+..|+++++++||+.||.++|+++|++
T Consensus 14 ~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 14 AITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred EeCcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 55566789999999999999999999998888999999999999999999999974
No 39
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=8e-18 Score=111.33 Aligned_cols=73 Identities=19% Similarity=0.456 Sum_probs=62.2
Q ss_pred CCeecchhhHHhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcC
Q psy8131 31 EQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCST 110 (198)
Q Consensus 31 ~g~~yC~~cy~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~ 110 (198)
++.+||++||.++++++|.+|++ +|.+..|.++++.||++||+|..|++
T Consensus 1 ~~~~yC~~dy~~~~~~~C~~C~~-------------------------------~I~~~~v~a~~~~wH~~CF~C~~C~~ 49 (81)
T 1v6g_A 1 GSSGSSGLDYQRLYGTRCFSCDQ-------------------------------FIEGEVVSALGKTYHPDCFVCAVCRL 49 (81)
T ss_dssp CCCCCCCSCGGGSCCCBCTTTCC-------------------------------BCCSCCEEETTEEECTTTSSCSSSCC
T ss_pred CCCCcchHHHHhHhCCcCccccC-------------------------------EeccceEEECCceeCccCCccccCCC
Confidence 35789999999999999999999 55567889999999999999999999
Q ss_pred CCCCCceeecCC-cccchhhHhhhh
Q psy8131 111 SLAGQRFTSRED-KPFCADCFGELF 134 (198)
Q Consensus 111 ~l~~~~~~~~~g-~~yC~~c~~~~~ 134 (198)
+|....++..++ .+||..||.+++
T Consensus 50 ~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 50 PFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp CCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred CCCCCCEEEeCCCCEEChhhhcccC
Confidence 997655666555 479999996654
No 40
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.2e-17 Score=106.65 Aligned_cols=68 Identities=28% Similarity=0.758 Sum_probs=60.8
Q ss_pred hhhcccccccccccccccccccccccCCcccccceeeeeeeeeeec--cCceEeCCcCccccCCCCccCcCCCCCCceee
Q psy8131 42 EKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIIT--SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTS 119 (198)
Q Consensus 42 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~ 119 (198)
++++++|.+|+++ |. +..+.++|+.||++||+|..|+++|.+..|++
T Consensus 2 ~~~~~~C~~C~~~-------------------------------I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 50 (72)
T 1x4k_A 2 SSGSSGCQECKKT-------------------------------IMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIP 50 (72)
T ss_dssp CSCCCCBSSSCCC-------------------------------CCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEE
T ss_pred CccCCCCccCCCc-------------------------------ccCCceEEEECcCeecccCCcccccCCccCCCccCc
Confidence 3578999999994 44 34778999999999999999999998888999
Q ss_pred cCCcccchhhHhhhhccCCCC
Q psy8131 120 REDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 120 ~~g~~yC~~c~~~~~~~~C~~ 140 (198)
+|+++||+.||.++|+++|+.
T Consensus 51 ~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 51 KDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp ETTEEEEHHHHHHHTSSCCCC
T ss_pred cCCeEECHHHHhHHhCCCCCC
Confidence 999999999999999999974
No 41
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.7e-17 Score=107.26 Aligned_cols=68 Identities=28% Similarity=0.732 Sum_probs=60.5
Q ss_pred hhhcccccccccccccccccccccccCCcccccceeeeeeeeeeec--cCceEeCCcCccccCCCCccCcCCCCCCceee
Q psy8131 42 EKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIIT--SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTS 119 (198)
Q Consensus 42 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~ 119 (198)
++++++|.+|+++ |. +..+.++++.||++||+|+.|+++|.+..|++
T Consensus 2 ~~~~~~C~~C~~~-------------------------------I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 50 (72)
T 1wyh_A 2 SSGSSGCSACGET-------------------------------VMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVP 50 (72)
T ss_dssp CCCCCBCSSSCCB-------------------------------CCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEE
T ss_pred CccCCCCccCCCc-------------------------------cccCccEEEECccccCcccCeECCCCCcCCCCccCC
Confidence 3578899999994 44 45677899999999999999999998888999
Q ss_pred cCCcccchhhHhhhhccCCCC
Q psy8131 120 REDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 120 ~~g~~yC~~c~~~~~~~~C~~ 140 (198)
+++++||+.||.++|+++|+.
T Consensus 51 ~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 51 DKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp ETTEEEEHHHHHHHTSCCCCC
T ss_pred cCCeEECHHHHHHHccCcCCC
Confidence 999999999999999999974
No 42
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.66 E-value=2.7e-17 Score=104.55 Aligned_cols=65 Identities=25% Similarity=0.586 Sum_probs=58.2
Q ss_pred hhhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcCCCCCCceeecC
Q psy8131 42 EKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSRE 121 (198)
Q Consensus 42 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~ 121 (198)
++++++|.+|++ +|.+..+.++|+.||++||+|+.|+++|.+..|++++
T Consensus 2 ~~~~~~C~~C~~-------------------------------~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~ 50 (66)
T 1nyp_A 2 SMGVPICGACRR-------------------------------PIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERK 50 (66)
T ss_dssp CCCCCEETTTTE-------------------------------ECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEEET
T ss_pred CcCCCCCcccCC-------------------------------EecceEEEECccccccCcCEECCCCCCCCCCceEeEC
Confidence 356889999999 4556678899999999999999999999888899999
Q ss_pred CcccchhhHhhhhccC
Q psy8131 122 DKPFCADCFGELFAKR 137 (198)
Q Consensus 122 g~~yC~~c~~~~~~~~ 137 (198)
|++||+.||.++|+++
T Consensus 51 g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 51 GLAYCETHYNQLFGDV 66 (66)
T ss_dssp TEEECHHHHHHHCSCC
T ss_pred CcEECHHHHHHHhCCC
Confidence 9999999999999875
No 43
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1e-16 Score=103.96 Aligned_cols=61 Identities=31% Similarity=0.682 Sum_probs=56.5
Q ss_pred hhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCC-CCceEecCCceeCcccccccC
Q psy8131 133 LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLV-GRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 133 ~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~C~~~~~ 197 (198)
+++++|++|+++|.+ ++|.++++.||++||+|..|+++|. +..|+..++++||..||.+++
T Consensus 3 ~~~~~C~~C~~~I~~----~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 3 SGSSGCDSCEKYITG----RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp CSCCSCSSSCCCCSS----CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred cCcCCcccCCCEecC----eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence 578999999999987 6789999999999999999999997 889999999999999998765
No 44
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.65 E-value=3.8e-17 Score=108.06 Aligned_cols=58 Identities=21% Similarity=0.623 Sum_probs=45.3
Q ss_pred cCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCCCCCCC
Q psy8131 88 SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPI 145 (198)
Q Consensus 88 ~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I 145 (198)
+..+.++++.||++||+|+.|+++|.+..|+++++++||+.||.++|+++|.+|++..
T Consensus 20 ~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 20 AEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp TTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred ceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 5577899999999999999999999888899999999999999999999999998764
No 45
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1e-16 Score=104.67 Aligned_cols=56 Identities=29% Similarity=0.710 Sum_probs=50.5
Q ss_pred eec-cCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccch-hhHhhhhccCCCC
Q psy8131 85 IIT-SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCA-DCFGELFAKRCYS 140 (198)
Q Consensus 85 ~i~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~-~c~~~~~~~~C~~ 140 (198)
+|. +..|.++++.||++||+|..|+++|.+..|+++|+++||+ .||.++|+++|.+
T Consensus 18 ~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 18 TVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp BCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred EeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 444 5577899999999999999999999988899999999999 7999999999974
No 46
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.5e-16 Score=103.93 Aligned_cols=66 Identities=41% Similarity=1.040 Sum_probs=59.0
Q ss_pred hhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 132 ELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 132 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
++++++|++|+++|.+.+.+.+|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 67 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMD 67 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhh
Confidence 468899999999999621236899999999999999999999999989999999999999999876
No 47
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.5e-16 Score=102.71 Aligned_cols=50 Identities=30% Similarity=0.827 Sum_probs=46.9
Q ss_pred CceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCC
Q psy8131 89 GGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138 (198)
Q Consensus 89 ~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C 138 (198)
..+.++++.||++||+|+.|+++|.+..|+++++++||+.||.++++|++
T Consensus 22 ~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 22 KYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred ceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 57788999999999999999999998889999999999999999999876
No 48
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.1e-16 Score=104.72 Aligned_cols=52 Identities=27% Similarity=0.545 Sum_probs=46.5
Q ss_pred cCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCC
Q psy8131 88 SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCY 139 (198)
Q Consensus 88 ~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~ 139 (198)
+..+.++|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|+
T Consensus 25 ~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 25 EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp TTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred ceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 4466899999999999999999999877799999999999999999999996
No 49
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=3.3e-16 Score=103.30 Aligned_cols=55 Identities=27% Similarity=0.674 Sum_probs=49.3
Q ss_pred eec-cCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCC
Q psy8131 85 IIT-SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 85 ~i~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~ 140 (198)
+|. +..+.++++.||++||+|..|+++|.+ .|+++|+++||+.||.++|+++|+.
T Consensus 24 ~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 24 EIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred eeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 443 567889999999999999999999986 5999999999999999999999974
No 50
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.9e-16 Score=100.79 Aligned_cols=65 Identities=55% Similarity=1.241 Sum_probs=57.5
Q ss_pred hhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 133 LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 133 ~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
.++++|++|+++|.+..++.+|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCccc
Confidence 45789999999998621237789999999999999999999999999999999999999998875
No 51
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.61 E-value=1.4e-16 Score=101.24 Aligned_cols=62 Identities=23% Similarity=0.603 Sum_probs=57.0
Q ss_pred hhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 132 ELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 132 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
++++++|++|+++|.+ ++|.+.++.||++||+|..|+++|.++.|+..++++||..||.+++
T Consensus 2 ~~~~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 2 SMGVPICGACRRPIEG----RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63 (66)
T ss_dssp CCCCCEETTTTEECCS----CEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHC
T ss_pred CcCCCCCcccCCEecc----eEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHh
Confidence 3568999999999985 6789999999999999999999999889999999999999998876
No 52
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=6.6e-16 Score=99.18 Aligned_cols=55 Identities=27% Similarity=0.567 Sum_probs=49.7
Q ss_pred eeccCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCC
Q psy8131 85 IITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCY 139 (198)
Q Consensus 85 ~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~ 139 (198)
+|.+..+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++..
T Consensus 14 ~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 14 FIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp BCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred EecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 5556788999999999999999999999888899999999999999999987653
No 53
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=4.6e-16 Score=100.82 Aligned_cols=64 Identities=19% Similarity=0.401 Sum_probs=56.8
Q ss_pred hhcccccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcCCCC-CCceeecC
Q psy8131 43 KFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLA-GQRFTSRE 121 (198)
Q Consensus 43 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~~l~-~~~~~~~~ 121 (198)
+++++|.+|++ +|.+..|.++++.||++||+|+.|+++|. +..|++++
T Consensus 3 ~~~~~C~~C~~-------------------------------~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~ 51 (73)
T 1wig_A 3 SGSSGCDSCEK-------------------------------YITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQG 51 (73)
T ss_dssp CSCCSCSSSCC-------------------------------CCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEET
T ss_pred cCcCCcccCCC-------------------------------EecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeC
Confidence 57899999999 56667788999999999999999999997 77899999
Q ss_pred CcccchhhHhhhhccC
Q psy8131 122 DKPFCADCFGELFAKR 137 (198)
Q Consensus 122 g~~yC~~c~~~~~~~~ 137 (198)
+++||..||.++++..
T Consensus 52 ~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 52 SSIWHPACRQAARTED 67 (73)
T ss_dssp TEEECTTHHHHTSSSS
T ss_pred CEEEChHHChHhhccc
Confidence 9999999998877643
No 54
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=4.1e-16 Score=100.64 Aligned_cols=64 Identities=28% Similarity=0.679 Sum_probs=58.1
Q ss_pred hhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 132 ELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 132 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
++++++|++|+++|.+. +.+|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 2 ~~~~~~C~~C~~~I~~~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPG--TRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp CSCCCCBSSSCCCCCSS--SCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred CccCCCCccCCCcccCC--ceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHh
Confidence 46789999999999862 36899999999999999999999998889999999999999998875
No 55
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=5.5e-16 Score=101.96 Aligned_cols=54 Identities=24% Similarity=0.608 Sum_probs=48.1
Q ss_pred eeccCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCC
Q psy8131 85 IITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCY 139 (198)
Q Consensus 85 ~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~ 139 (198)
+|.+..|.++|+.||++||+|..|+++|.+.. ++++|++||..||.++|+|+++
T Consensus 24 ~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 24 IIDEQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp BCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred EecceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 55577788999999999999999999998774 5899999999999999998765
No 56
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=5e-16 Score=99.73 Aligned_cols=61 Identities=30% Similarity=0.769 Sum_probs=56.2
Q ss_pred hhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 133 LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 133 ~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
+++++|++|+++|.+ ..|.+.++.||++||+|..|+++|.++.|+..++++||..||.+++
T Consensus 3 ~~~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 3 SGSSGCVQCKKPITT----GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp CCCCBCSSSCCBCCS----SEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCCCcccCCeecc----ceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 468999999999986 4689999999999999999999999889999999999999998875
No 57
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.2e-15 Score=98.47 Aligned_cols=52 Identities=31% Similarity=0.714 Sum_probs=46.2
Q ss_pred CceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCCC
Q psy8131 89 GGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSC 141 (198)
Q Consensus 89 ~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C 141 (198)
..+.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++ .+|..+
T Consensus 20 ~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 20 AGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp CCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred eEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 4778999999999999999999998888999999999999999987 455543
No 58
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=6.7e-16 Score=104.04 Aligned_cols=66 Identities=23% Similarity=0.554 Sum_probs=59.5
Q ss_pred hhHhhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 128 DCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 128 ~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
..+...++++|++|+++|.+ ++|.+.++.||++||+|..|+++|.+..|+..++.+||..||.++|
T Consensus 18 ~~~~~~~~~~C~~C~~~I~~----~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 18 HIPAGKRTPMCAHCNQVIRG----PFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp EECTTTCCCBBSSSCCBCCS----CEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred cCCCCCCCCCCccCCCEecc----eEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 33556788999999999975 6789999999999999999999998888999999999999998876
No 59
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=4.2e-16 Score=102.50 Aligned_cols=55 Identities=24% Similarity=0.412 Sum_probs=50.1
Q ss_pred eeccCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCC
Q psy8131 85 IITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCY 139 (198)
Q Consensus 85 ~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~ 139 (198)
+|.+..+.++++.||++||+|..|+++|.+..|+++++++||+.||.++|++++.
T Consensus 24 ~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 24 GIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 5566788999999999999999999999877799999999999999999999875
No 60
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.2e-15 Score=102.59 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=50.5
Q ss_pred eeccCceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCC
Q psy8131 85 IITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCY 139 (198)
Q Consensus 85 ~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~ 139 (198)
+|.+..+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++++.
T Consensus 34 ~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 34 GIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp BCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred EecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 5666778899999999999999999999887899999999999999999999875
No 61
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.58 E-value=5.6e-16 Score=98.12 Aligned_cols=62 Identities=26% Similarity=0.761 Sum_probs=55.2
Q ss_pred hccCCCCCCCCCcCCCCceEEeeCCCccc--ccCcccCcCCCCCCCCceEecCCceeC-cccccccC
Q psy8131 134 FAKRCYSCKKPITGIGGTRFISFEDRHWH--NDCFMCASCQSSLVGRGFITDGEDIIC-PDCAKAKL 197 (198)
Q Consensus 134 ~~~~C~~C~~~I~~~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~C-~~C~~~~~ 197 (198)
|+++|++|+++|.+. +..|++.|+.|| ++||+|+.|+++|.++.|+..+++||| ..||.+++
T Consensus 1 fa~~C~~C~~~I~~~--~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~~ 65 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPE--VQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS 65 (65)
T ss_dssp -CEECTTTSSEECTT--SCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTTC
T ss_pred CcCCCcCCCCeeccC--ceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhhC
Confidence 578999999999852 268999999999 999999999999999999999999999 89997653
No 62
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=6.4e-16 Score=99.71 Aligned_cols=64 Identities=25% Similarity=0.695 Sum_probs=57.9
Q ss_pred hhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 132 ELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 132 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
++++++|++|+++|.+. +.++.+.++.||++||+|..|+++|.+..|+..++.+||..||.+++
T Consensus 2 ~~~~~~C~~C~~~I~~~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPG--SRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp CCCCCBCSSSCCBCCSS--SCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred CccCCCCccCCCccccC--ccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 45789999999999852 37899999999999999999999998888999999999999998875
No 63
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=4.9e-16 Score=99.49 Aligned_cols=61 Identities=34% Similarity=0.813 Sum_probs=55.8
Q ss_pred hhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 133 LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 133 ~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
+++++|++|+++|.+ ..|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 3 ~~~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 3 SGSSGCVKCNKAITS----GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp CCCCCCSSSCCCCCT----TCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CCcCCCcccCCEeCc----ceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 467899999999986 4688999999999999999999999889999999999999998765
No 64
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=7.9e-16 Score=99.32 Aligned_cols=63 Identities=27% Similarity=0.566 Sum_probs=56.9
Q ss_pred hhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 133 LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 133 ~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
.++++|++|+++|.+. +.++.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 3 ~~~~~C~~C~~~I~~~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGD--GAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp SCCCCCSSSCSCCCSS--SCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred CCCCCCccCCCccCCC--ceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 4679999999999862 36789999999999999999999999888999999999999998765
No 65
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.57 E-value=7e-16 Score=99.36 Aligned_cols=65 Identities=17% Similarity=0.367 Sum_probs=57.9
Q ss_pred hhhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 131 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
..+++++|++|+++|.+. +.++.+.++.||++||+|..|+++|.+..|+..++++||..||.++|
T Consensus 7 ~~~~~~~C~~C~~~i~~~--e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPA--EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CCCTTCBCTTTCCBCCTT--CEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHT
T ss_pred cCcCCccchhcCccccCC--ceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhh
Confidence 346789999999999863 46788999999999999999999997778999999999999999876
No 66
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.3e-15 Score=97.85 Aligned_cols=60 Identities=30% Similarity=0.729 Sum_probs=55.1
Q ss_pred hccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 134 FAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 134 ~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
++++|..|+++|.+ ++|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 4 ~~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG----RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp CSSBCSSSCCBCCS----CCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCEecc----eEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 46899999999986 5789999999999999999999998888999999999999998765
No 67
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.56 E-value=1.6e-15 Score=108.06 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=66.9
Q ss_pred HHhhhcc--cccccccccccccccccccccCCcccccceeeeeeeeeeeccCceEeCCcCccccCCCCccCcCCC-CCCc
Q psy8131 40 YEEKFAT--RCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSL-AGQR 116 (198)
Q Consensus 40 y~~~~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~H~~CF~C~~C~~~l-~~~~ 116 (198)
|.++|++ +|.+|+++|. ..+..+.++++.||++||+|..|+++| .+..
T Consensus 1 Y~r~fg~~~~C~~C~~~I~-----------------------------~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~ 51 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIR-----------------------------AYEMTMRVKDKVYHLECFKCAACQKHFSVGDR 51 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCC-----------------------------TTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCE
T ss_pred ChhhhCCCCcccCCCCeec-----------------------------CCceEEEECCcccccccCccccCCCCCCCCCc
Confidence 4567888 9999999531 113456789999999999999999999 5667
Q ss_pred eeecCCcccchhhHhhhhccCCCCCCCCCcC
Q psy8131 117 FTSREDKPFCADCFGELFAKRCYSCKKPITG 147 (198)
Q Consensus 117 ~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~~ 147 (198)
|+..++++||..||.++++++|..++.++.+
T Consensus 52 f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~ 82 (123)
T 2l3k_A 52 YLLINSDIVCEQDIYEWTKINGGSGGSGGSG 82 (123)
T ss_dssp EEECSSSEEEGGGHHHHHHHHTCCCCCCSCC
T ss_pred EEeeCCEEEcHHHhHHHhccccCCCCCCCcc
Confidence 9999999999999999999999999888765
No 68
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.6e-15 Score=101.36 Aligned_cols=52 Identities=23% Similarity=0.553 Sum_probs=48.4
Q ss_pred CceEeCCcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCC
Q psy8131 89 GGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140 (198)
Q Consensus 89 ~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~ 140 (198)
..|.++++.||++||+|..|+++|.+..|+++|+++||+.||.++++++|+.
T Consensus 29 ~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~ 80 (91)
T 2d8y_A 29 ERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNY 80 (91)
T ss_dssp SEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCC
T ss_pred eeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCc
Confidence 4678999999999999999999998878999999999999999999999984
No 69
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.4e-15 Score=97.35 Aligned_cols=62 Identities=23% Similarity=0.535 Sum_probs=56.1
Q ss_pred hhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCc-ccccccC
Q psy8131 133 LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP-DCAKAKL 197 (198)
Q Consensus 133 ~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~-~C~~~~~ 197 (198)
.++++|++|+++|.+. ..|.+.++.||++||+|..|+++|.++.|+..++++||. .||.+++
T Consensus 7 ~~~~~C~~C~~~I~~~---~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f 69 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFA---EKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69 (76)
T ss_dssp CCCCBCTTTCCBCCTT---TEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHS
T ss_pred CCCCCCcCCCCEeECC---eEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhc
Confidence 4678999999999853 568899999999999999999999988899999999999 7998875
No 70
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.54 E-value=3.7e-15 Score=94.30 Aligned_cols=49 Identities=45% Similarity=0.909 Sum_probs=43.7
Q ss_pred eec--cCceEeCCcCcc--ccCCCCccCcCCCCCCceeecCCcccc-hhhHhhh
Q psy8131 85 IIT--SGGVTYKNEPWH--RECFTCSNCSTSLAGQRFTSREDKPFC-ADCFGEL 133 (198)
Q Consensus 85 ~i~--~~~~~~~~~~~H--~~CF~C~~C~~~l~~~~~~~~~g~~yC-~~c~~~~ 133 (198)
+|. +..|+++|+.|| ++||+|+.|+++|.+..|++++|++|| .+||.++
T Consensus 11 ~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 11 AIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred eeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 455 568899999999 999999999999998889999999999 8998654
No 71
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.53 E-value=1.2e-15 Score=100.70 Aligned_cols=54 Identities=24% Similarity=0.748 Sum_probs=42.8
Q ss_pred CccCCcccCcCCcccCCCCCCCCCCCcccCCCeecchhhHHhhhcccccccccc
Q psy8131 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKT 54 (198)
Q Consensus 1 ~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~ 54 (198)
|.++++.||++||+|..|+++|.+..|+++++++||+.||.++|+|+|.+|+++
T Consensus 23 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g 76 (81)
T 1a7i_A 23 VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQG 76 (81)
T ss_dssp EEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC---------
T ss_pred EEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCc
Confidence 357899999999999999999999999999999999999999999999999984
No 72
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=2.1e-15 Score=98.35 Aligned_cols=54 Identities=20% Similarity=0.591 Sum_probs=50.6
Q ss_pred CccCCcccCcCCcccCCCCCCCCCCCcccCCCeecch-hhHHhhhcccccccccc
Q psy8131 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCA-NCYEEKFATRCVKCNKT 54 (198)
Q Consensus 1 ~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~cy~~~~~~~C~~C~~~ 54 (198)
|.++|+.||++||+|..|+++|.+..|+++||++||+ .||.++|+|+|.+|++.
T Consensus 16 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~ 70 (76)
T 1iml_A 16 VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGA 70 (76)
T ss_dssp EEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCS
T ss_pred EEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCc
Confidence 3578999999999999999999999999999999999 69999999999999984
No 73
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=2.5e-15 Score=98.19 Aligned_cols=63 Identities=19% Similarity=0.421 Sum_probs=56.4
Q ss_pred hhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 133 LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 133 ~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
.++++|++|+++|.+. +.++.+.|+.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 9 ~~~~~C~~C~~~I~~~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 71 (77)
T 1g47_A 9 LASATCERCKGGFAPA--EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71 (77)
T ss_dssp CCCCBCSSSCCBCCST--TTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHC
T ss_pred CCCCCchhcCCccCCC--ceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHh
Confidence 4578999999999852 37789999999999999999999998778999999999999998875
No 74
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=5.2e-15 Score=97.26 Aligned_cols=60 Identities=23% Similarity=0.449 Sum_probs=53.8
Q ss_pred hhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 133 LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 133 ~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
.++++|++|+++|.+ .+|.+.++.||++||+|..|+++|.+..| ..++++||..||.+++
T Consensus 13 ~~~~~C~~C~~~I~~----~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f 72 (79)
T 2cor_A 13 LGKYICQKCHAIIDE----QPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMG 72 (79)
T ss_dssp CCCCBCTTTCCBCCS----CCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTS
T ss_pred cCCCCCccCCCEecc----eEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhC
Confidence 357899999999995 56899999999999999999999987765 8899999999998876
No 75
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=9.7e-15 Score=96.18 Aligned_cols=59 Identities=27% Similarity=0.628 Sum_probs=53.1
Q ss_pred ccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 135 ~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
.++|.+|+++|... .+|.++++.||++||+|..|+++|.+ .|+..++++||..||.++|
T Consensus 15 ~~~C~~C~~~I~~~---~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~f 73 (80)
T 2dj7_A 15 PSHCAGCKEEIKHG---QSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQF 73 (80)
T ss_dssp CSCCTTTCCCCSSS---CCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHT
T ss_pred CCCCcCcCCeeCCC---eEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHc
Confidence 57899999999853 56889999999999999999999986 5889999999999998876
No 76
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.51 E-value=4e-15 Score=95.79 Aligned_cols=64 Identities=25% Similarity=0.593 Sum_probs=54.6
Q ss_pred HhhhcccccccccccccccccccccccCCcccccceeeeeeeeeeecc--CceEeCCcCccccCCCCccCcCCCCCCcee
Q psy8131 41 EEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITS--GGVTYKNEPWHRECFTCSNCSTSLAGQRFT 118 (198)
Q Consensus 41 ~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~ 118 (198)
...++++|.+|+++ |.. ..+.++|+.||++||+|+.|+++|.+..|+
T Consensus 7 ~~~~~~~C~~C~~~-------------------------------i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~ 55 (72)
T 3f6q_B 7 QGSASATCERCKGG-------------------------------FAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY 55 (72)
T ss_dssp CCCTTCBCTTTCCB-------------------------------CCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCE
T ss_pred cCcCCccchhcCcc-------------------------------ccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeE
Confidence 34568899999994 442 245799999999999999999999777899
Q ss_pred ecCCcccchhhHhhhhc
Q psy8131 119 SREDKPFCADCFGELFA 135 (198)
Q Consensus 119 ~~~g~~yC~~c~~~~~~ 135 (198)
.++|++||+.||.++|+
T Consensus 56 ~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 56 EFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp EETTEEECHHHHHHHTC
T ss_pred eECCeEeCHHHHHHhhC
Confidence 99999999999999875
No 77
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=2.5e-15 Score=98.74 Aligned_cols=59 Identities=29% Similarity=0.751 Sum_probs=54.6
Q ss_pred ccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 135 ~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
.++|++|+++|.+ ++|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 15 ~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 15 LPMCDKCGTGIVG----VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERV 73 (79)
T ss_dssp CCCCSSSCCCCCS----SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHH
T ss_pred CCccccCCCCccC----cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHh
Confidence 5899999999997 5789999999999999999999998778999999999999998775
No 78
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.1e-14 Score=97.92 Aligned_cols=60 Identities=27% Similarity=0.626 Sum_probs=55.0
Q ss_pred hccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 134 FAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 134 ~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
..++|.+|+++|.+ ++|.+.++.||++||+|..|+++|.+..|+..++.+||..||.++|
T Consensus 24 ~~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 24 RMPLCDKCGSGIVG----AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARART 83 (89)
T ss_dssp SCCBCTTTCCBCCS----CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHS
T ss_pred cCCCcccCCCEecc----cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHh
Confidence 36889999999997 5689999999999999999999998878999999999999998876
No 79
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.49 E-value=7.1e-15 Score=104.65 Aligned_cols=66 Identities=30% Similarity=0.653 Sum_probs=58.4
Q ss_pred Hhhhhcc--CCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCC-CCCceEecCCceeCcccccccC
Q psy8131 130 FGELFAK--RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL-VGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 130 ~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
|.++|++ +|+.|+++|.+. +.++.+.++.||++||+|..|+++| .++.|+..++.+||..||.+++
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~--e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAY--EMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTT--CCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHH
T ss_pred ChhhhCCCCcccCCCCeecCC--ceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHh
Confidence 4567888 999999999862 3678999999999999999999999 6778999999999999998764
No 80
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=102.76 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=45.0
Q ss_pred eeccC-ceEeCCcCccccCCCCccCcCCCC--CCceeecCCcccchhhHhhhhc
Q psy8131 85 IITSG-GVTYKNEPWHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFA 135 (198)
Q Consensus 85 ~i~~~-~~~~~~~~~H~~CF~C~~C~~~l~--~~~~~~~~g~~yC~~c~~~~~~ 135 (198)
+|.+. .+.++++.||++||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 70 ~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 70 KIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp BCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 55555 478999999999999999999996 4679999999999999999875
No 81
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.7e-14 Score=94.49 Aligned_cols=60 Identities=17% Similarity=0.471 Sum_probs=52.9
Q ss_pred ccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceE--ecCCceeCcccccccC
Q psy8131 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFI--TDGEDIICPDCAKAKL 197 (198)
Q Consensus 135 ~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~~~~~C~~C~~~~~ 197 (198)
+++|.+|+++|... ..+.+.++.||++||+|..|+++|.+..|. ..++++||+.||.+++
T Consensus 15 ~~~C~~C~~~I~~~---e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 15 GDLCALCGEHLYVL---ERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp SCBCSSSCCBCCTT---TBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCCcccCCCcccc---eEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhh
Confidence 57899999999753 456799999999999999999999888887 3689999999999876
No 82
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-14 Score=103.06 Aligned_cols=63 Identities=30% Similarity=0.537 Sum_probs=56.2
Q ss_pred hhhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCC--CCceEecCCceeCcccccccC
Q psy8131 132 ELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLV--GRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 132 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~C~~C~~~~~ 197 (198)
..++++|++|+++|.+. .++.+.++.||++||+|..|+++|. +..|+..++++||..||.++|
T Consensus 58 ~~~~~~C~~C~~~I~~~---~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADR---FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp CSSCSBBSSSSSBCCSS---SEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred CccCCcCcCCCCCcCCc---EEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 34578999999999873 5689999999999999999999995 578999999999999999876
No 83
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=3.1e-14 Score=94.16 Aligned_cols=51 Identities=16% Similarity=0.418 Sum_probs=44.3
Q ss_pred cCceEeCCcCccccCCCCccCcCCCCCCcee--ecCCcccchhhHhhhhccCC
Q psy8131 88 SGGVTYKNEPWHRECFTCSNCSTSLAGQRFT--SREDKPFCADCFGELFAKRC 138 (198)
Q Consensus 88 ~~~~~~~~~~~H~~CF~C~~C~~~l~~~~~~--~~~g~~yC~~c~~~~~~~~C 138 (198)
...+.++++.||++||+|+.|+++|....|+ ++||++||+.||.++++...
T Consensus 28 ~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 28 LERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp TTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred ceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 4466789999999999999999999888787 47999999999998887644
No 84
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=2.6e-14 Score=96.38 Aligned_cols=61 Identities=18% Similarity=0.428 Sum_probs=55.1
Q ss_pred hccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCceEecCCceeCcccccccC
Q psy8131 134 FAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197 (198)
Q Consensus 134 ~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 197 (198)
.+++|++|+++|.+. ..|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++
T Consensus 14 ~~~~C~~C~~~I~~~---~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 14 ARETCVECQKTVYPM---ERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp SSCBCTTTCCBCCTT---SEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHS
T ss_pred CCCcCccCCCccCCc---eeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHh
Confidence 468999999999863 4678999999999999999999998878999999999999998876
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.70 E-value=9.8e-06 Score=42.83 Aligned_cols=29 Identities=28% Similarity=0.718 Sum_probs=24.9
Q ss_pred ccCCCCCCCCCcCCCCceEEeeCCCcccccCc
Q psy8131 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCF 166 (198)
Q Consensus 135 ~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf 166 (198)
.++|..|++++... +.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~---Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPT---EKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGG---GCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecc---eeEEECCeEecccCC
Confidence 57899999999874 456789999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.15 E-value=0.00011 Score=38.70 Aligned_cols=15 Identities=33% Similarity=0.897 Sum_probs=12.4
Q ss_pred CceEeCCcCccccCC
Q psy8131 89 GGVTYKNEPWHRECF 103 (198)
Q Consensus 89 ~~~~~~~~~~H~~CF 103 (198)
..+.+.|+.||..||
T Consensus 17 Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 17 EKVNCLDKFWHKACF 31 (31)
T ss_dssp GCCCSSSSCCCGGGC
T ss_pred eeEEECCeEecccCC
Confidence 456688999999997
No 87
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=86.86 E-value=0.5 Score=27.87 Aligned_cols=30 Identities=27% Similarity=0.607 Sum_probs=25.3
Q ss_pred ccCCCCCCCCCCCcccCCCeecc-hhhHHhh
Q psy8131 14 ACVVCKTPIGTKSFIPREQEIYC-ANCYEEK 43 (198)
Q Consensus 14 ~C~~C~~~L~~~~f~~~~g~~yC-~~cy~~~ 43 (198)
.|..|+..++...-+.+||+.|| +.|....
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGH 39 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccC
Confidence 47899999988888899999999 8887653
No 88
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=84.93 E-value=0.9 Score=25.90 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCCccCcCCCCC--C-ceeecCCcccchhhHhhhh--ccCCCCCCCCCc
Q psy8131 103 FTCSNCSTSLAG--Q-RFTSREDKPFCADCFGELF--AKRCYSCKKPIT 146 (198)
Q Consensus 103 F~C~~C~~~l~~--~-~~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~ 146 (198)
..|..|...+.. . .....=+..||..|..+.+ ...|..|+++|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456666666632 1 1222336677777765432 256777766664
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=83.60 E-value=0.78 Score=31.33 Aligned_cols=104 Identities=17% Similarity=0.455 Sum_probs=64.7
Q ss_pred CCcccCCCCCCCCCC------CcccCCCeecchhhHHhhh--cccccccccccccccccccccccCCcccccceeeeeee
Q psy8131 11 KCFACVVCKTPIGTK------SFIPREQEIYCANCYEEKF--ATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFL 82 (198)
Q Consensus 11 ~CF~C~~C~~~L~~~------~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (198)
+=+.|..|...+.+. .....=|-.||..|..+.+ ...|..|.+.+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~-------------------------- 59 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN-------------------------- 59 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT--------------------------
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc--------------------------
Confidence 347899998887542 1334558899999998764 347888888431
Q ss_pred eeeeccCceEeCCcCccccCCCCccCcCCCCC-----Cc-eeecCCcccchhhHhhh--hccCCCCCCCCCcC
Q psy8131 83 FQIITSGGVTYKNEPWHRECFTCSNCSTSLAG-----QR-FTSREDKPFCADCFGEL--FAKRCYSCKKPITG 147 (198)
Q Consensus 83 ~~~i~~~~~~~~~~~~H~~CF~C~~C~~~l~~-----~~-~~~~~g~~yC~~c~~~~--~~~~C~~C~~~I~~ 147 (198)
...+.. ...-.+=..|..|...+.. .. ....=|..||..|..+. ....|..|..+|..
T Consensus 60 -----~~~l~~--l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 60 -----HKRYHP--IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp -----TTCEEE--CBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred -----cccccc--cccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 111110 0112234567888776632 11 23345888999997543 35689999998876
No 90
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.57 E-value=1.9 Score=26.23 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=33.7
Q ss_pred CCCCccCcCCCCCCceee-cCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 102 CFTCSNCSTSLAGQRFTS-REDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 102 CF~C~~C~~~l~~~~~~~-~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
=+.|..|...+.+. ... .=|..||..|..+.+ ...|..|+++|..
T Consensus 15 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLIDA-TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSSC-EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHCc-CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 36788888877654 443 568999999986544 5789999999876
No 91
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=80.70 E-value=1.7 Score=28.82 Aligned_cols=63 Identities=24% Similarity=0.481 Sum_probs=42.8
Q ss_pred CCccCcCCCCCCceeecCCcccchhhHhh---hhccCCCCCCCCCcCCCCceEEeeCCCcccccCcccC---cCCCCC
Q psy8131 104 TCSNCSTSLAGQRFTSREDKPFCADCFGE---LFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCA---SCQSSL 175 (198)
Q Consensus 104 ~C~~C~~~l~~~~~~~~~g~~yC~~c~~~---~~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~---~C~~~l 175 (198)
.|..|+.|+....-.+-=+..+|.+|+.. .-...|..|+.+|..- +.. ..|.. |.|+ .|.+.+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV---e~~-~~~~i-----f~C~~~~~Ckrty 71 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI---EQC-TRGSL-----FMCSIVQGCKRTY 71 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE---EEE-EGGGC-----CCCCCCCCCCCCC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee---EEe-ccCCE-----EECCCCCCHHHHh
Confidence 37889888865434444578999999965 3457899999999862 112 23444 6676 677765
No 92
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.37 E-value=1.5 Score=26.11 Aligned_cols=44 Identities=23% Similarity=0.733 Sum_probs=32.9
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
+.|..|...+.+. ....=|..||..|..+.. ...|..|+++|..
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 6688887777543 334568999999987665 3579999999875
No 93
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=79.67 E-value=1.3 Score=26.04 Aligned_cols=29 Identities=17% Similarity=0.540 Sum_probs=23.6
Q ss_pred CCccCcCCCCCCceeecCCcccc-hhhHhh
Q psy8131 104 TCSNCSTSLAGQRFTSREDKPFC-ADCFGE 132 (198)
Q Consensus 104 ~C~~C~~~l~~~~~~~~~g~~yC-~~c~~~ 132 (198)
.|..|+..++.+.-+.+||+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 57788888877778999999999 777643
No 94
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=79.27 E-value=1.9 Score=26.52 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=35.2
Q ss_pred cCCCCccCcCCCCCCceeecCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 101 ECFTCSNCSTSLAGQRFTSREDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 101 ~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
+=|.|..|...+.+ .....-|..||..|..+.+ ...|..|++++..
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 34788999887754 3556789999999987655 3479999998865
No 95
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=77.25 E-value=3.6 Score=23.16 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=30.5
Q ss_pred ccCCCCCCCCCcCCCCceEEeeCCCcccccCc--------ccCcCCCCCCC
Q psy8131 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCF--------MCASCQSSLVG 177 (198)
Q Consensus 135 ~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~ 177 (198)
...|..|...+.......++..-++.||.+|. +|..|..+|.|
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35688888887542222445567899999886 58889888754
No 96
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.19 E-value=2.7 Score=25.39 Aligned_cols=44 Identities=23% Similarity=0.510 Sum_probs=33.2
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhhc-----cCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELFA-----KRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~-----~~C~~C~~~I~~ 147 (198)
+.|..|...+... ....=|..||..|..+... ..|..|+++|..
T Consensus 21 ~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 21 VICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CBCTTTCSBCSSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CEeccCCcccCCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 6788888877643 4455689999999877653 379999998865
No 97
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.44 E-value=2.6 Score=28.39 Aligned_cols=45 Identities=22% Similarity=0.548 Sum_probs=35.0
Q ss_pred CCCCccCcCCCCCCceee-cCCcccchhhHhhhhccCCCCCCCCCcC
Q psy8131 102 CFTCSNCSTSLAGQRFTS-REDKPFCADCFGELFAKRCYSCKKPITG 147 (198)
Q Consensus 102 CF~C~~C~~~l~~~~~~~-~~g~~yC~~c~~~~~~~~C~~C~~~I~~ 147 (198)
=+.|..|...+..- ... .=|..||..|..+.....|..|+.++..
T Consensus 22 ~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 37788888877543 444 5689999999887777889999998854
No 98
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.82 E-value=4.6 Score=24.90 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=33.1
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh--------ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF--------AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~--------~~~C~~C~~~I~~ 147 (198)
+.|..|...+... ....=|..||..|..+.+ ...|..|+.++..
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 6788888887553 344568899999986543 4689999998875
No 99
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.42 E-value=4.3 Score=25.05 Aligned_cols=44 Identities=23% Similarity=0.553 Sum_probs=32.8
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh--------ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF--------AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~--------~~~C~~C~~~I~~ 147 (198)
+.|..|...+... ....=|..||..|..+.+ ...|..|++++..
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 6788888887554 345568999999986532 4578999888865
No 100
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=71.83 E-value=4.8 Score=24.51 Aligned_cols=44 Identities=14% Similarity=0.499 Sum_probs=32.6
Q ss_pred CCCccCcCCCCCCceeec-CCcccchhhHhhhhc----cCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSR-EDKPFCADCFGELFA----KRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~-~g~~yC~~c~~~~~~----~~C~~C~~~I~~ 147 (198)
+.|..|...+.+. .... =|..||..|..+.+. ..|..|++++..
T Consensus 16 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 6788888877653 4455 489999999876553 479999998654
No 101
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=71.73 E-value=6.2 Score=23.28 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=30.1
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhh--hccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGEL--FAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~--~~~~C~~C~~~I~~ 147 (198)
..|..|...+.+......=|..||..|..+. ....|..|+.++..
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3567777776554344445778888887543 24678889888864
No 102
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.69 E-value=4.2 Score=24.57 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=34.1
Q ss_pred CCcccCCCCCCCCCCCcccCCCeecchhhHHhhh--ccccccccccc
Q psy8131 11 KCFACVVCKTPIGTKSFIPREQEIYCANCYEEKF--ATRCVKCNKTF 55 (198)
Q Consensus 11 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~~ 55 (198)
+=+.|..|...+.+......=|..||..|..+.+ ...|..|.+++
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 3478999988887643334678899999997765 46799999854
No 103
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.09 E-value=4.1 Score=27.33 Aligned_cols=44 Identities=20% Similarity=0.542 Sum_probs=35.3
Q ss_pred CcccCCCCCCCCCCCcccCCCeecchhhHHhhhccccccccccc
Q psy8131 12 CFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTF 55 (198)
Q Consensus 12 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~~ 55 (198)
=+.|..|...+.+......=|..||..|....+...|..|..++
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcC
Confidence 37899998888764333367999999999988778899999865
No 104
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.03 E-value=5.3 Score=26.25 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=32.2
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhhc-----cCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELFA-----KRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~-----~~C~~C~~~I~~ 147 (198)
+.|..|...+... ....=|..||..|..+... ..|..|+.+|..
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 5788887777543 3345689999999876553 379999998875
No 105
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=69.33 E-value=3.8 Score=26.48 Aligned_cols=44 Identities=16% Similarity=0.500 Sum_probs=32.4
Q ss_pred CCCccCcCCCCCCceee-cCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTS-REDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~-~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
+.|..|...+.+. ... .=|..||..|..+.. ...|..|+.++..
T Consensus 23 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIA-MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCc-CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 6788888877653 334 568999999986554 4579999988864
No 106
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.28 E-value=5.8 Score=23.30 Aligned_cols=45 Identities=24% Similarity=0.623 Sum_probs=31.3
Q ss_pred CCCccCcC-CCCCCc---eeecCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 103 FTCSNCST-SLAGQR---FTSREDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~-~l~~~~---~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
+.|..|.. .+.+.. ....=|..||..|..+.+ ...|..|++++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 56788877 453321 233458999999987663 3579999999876
No 107
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=67.55 E-value=1.2 Score=33.56 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=25.5
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhh
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGE 132 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~ 132 (198)
.+|+.|+.......-...||+++|.+|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 579999998876667788999999999865
No 108
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.55 E-value=4.7 Score=24.92 Aligned_cols=44 Identities=32% Similarity=0.800 Sum_probs=32.4
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
+.|..|...+.. .....=|..||..|..+.+ ...|..|++++..
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 678888877754 3445568899999986543 4679999998863
No 109
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=67.13 E-value=4.3 Score=22.86 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=4.8
Q ss_pred CcccchhhHh
Q psy8131 122 DKPFCADCFG 131 (198)
Q Consensus 122 g~~yC~~c~~ 131 (198)
|..||..|..
T Consensus 28 ~H~f~~~Ci~ 37 (55)
T 1iym_A 28 GHGFHAECVD 37 (55)
T ss_dssp CCEECTTHHH
T ss_pred CCcccHHHHH
Confidence 4445555543
No 110
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=66.99 E-value=4.4 Score=22.41 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=14.6
Q ss_pred eeecCCcccchhhHhhhh
Q psy8131 117 FTSREDKPFCADCFGELF 134 (198)
Q Consensus 117 ~~~~~g~~yC~~c~~~~~ 134 (198)
|...+.+++|.+|++++.
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 446689999999998764
No 111
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.97 E-value=4.4 Score=23.27 Aligned_cols=43 Identities=16% Similarity=0.427 Sum_probs=27.2
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~~ 147 (198)
+.|..|...+... ....=|..||..|..+ ....|..|.+++..
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWPL 49 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSSC
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEeec
Confidence 4577776666432 3334567778777654 35678888877754
No 112
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.79 E-value=7.2 Score=24.25 Aligned_cols=45 Identities=24% Similarity=0.505 Sum_probs=33.1
Q ss_pred CCCccCcCCCCCC---ceeecCCcccchhhHhhhhc-----cCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQ---RFTSREDKPFCADCFGELFA-----KRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~---~~~~~~g~~yC~~c~~~~~~-----~~C~~C~~~I~~ 147 (198)
+.|..|...+... .....=|..||..|..+... ..|..|.+++..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 6788888887542 23344589999999876543 579999998865
No 113
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=66.69 E-value=4.4 Score=27.04 Aligned_cols=73 Identities=16% Similarity=0.428 Sum_probs=43.1
Q ss_pred CcCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCCCCCCCcCCCCceEE--eeCCCcccccCcccCcCC
Q psy8131 95 NEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFI--SFEDRHWHNDCFMCASCQ 172 (198)
Q Consensus 95 ~~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~--~~~~~~~H~~Cf~C~~C~ 172 (198)
++.||+.|+.=.. . .+..+..+|.+|. .|..|++.-.+. .++ ..-++.||..|..-
T Consensus 29 ~~~~H~~Cl~~~~-----~----~~~~~~W~C~~C~------~C~~C~~~~~~~---~ll~Cd~C~~~yH~~Cl~p---- 86 (111)
T 2ysm_A 29 GQHYHGMCLDIAV-----T----PLKRAGWQCPECK------VCQNCKQSGEDS---KMLVCDTCDKGYHTFCLQP---- 86 (111)
T ss_dssp CCEECTTTTTCCC-----C----TTTSTTCCCTTTC------CCTTTCCCSCCT---TEEECSSSCCEEEGGGSSS----
T ss_pred CCCcChHHhCCcc-----c----cccccCccCCcCC------cccccCccCCCC---CeeECCCCCcHHhHHhcCC----
Confidence 4678988765221 1 1235677888773 688898875431 333 34468899987743
Q ss_pred CCCCCCceEecCCceeCccccc
Q psy8131 173 SSLVGRGFITDGEDIICPDCAK 194 (198)
Q Consensus 173 ~~l~~~~~~~~~~~~~C~~C~~ 194 (198)
+|... -.+..+|..|..
T Consensus 87 -pl~~~----P~g~W~C~~C~~ 103 (111)
T 2ysm_A 87 -VMKSV----PTNGWKCKNCRI 103 (111)
T ss_dssp -CCSSC----CSSCCCCHHHHC
T ss_pred -ccccC----CCCCcCCcCCcC
Confidence 33221 135677777744
No 114
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=66.64 E-value=6.8 Score=24.41 Aligned_cols=45 Identities=22% Similarity=0.522 Sum_probs=31.0
Q ss_pred CCCccCcCCCCCC--ceee-cCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQ--RFTS-REDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~--~~~~-~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
+.|..|-.++... .+.. .=|..+|..|+.+.. ...|..|.+++..
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 5677777777432 2211 258889999987654 4589999998875
No 115
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=65.90 E-value=5.8 Score=26.05 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=33.4
Q ss_pred CCCCccCcCCCCCCceee-cCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 102 CFTCSNCSTSLAGQRFTS-REDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 102 CF~C~~C~~~l~~~~~~~-~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
=+.|..|...+.+ .... .=|..||..|..+.+ ...|..|+.++..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3678888877754 3444 668999999986654 3679999998875
No 116
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.62 E-value=5.8 Score=23.81 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=32.3
Q ss_pred CCCCccCcCCCCCCceeecCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 102 CFTCSNCSTSLAGQRFTSREDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 102 CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
-+.|..|...+... ....=|..||..|..+.+ ...|..|.++|..
T Consensus 15 ~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 36788887777543 444568899999986543 3679999988864
No 117
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.19 E-value=9 Score=22.93 Aligned_cols=39 Identities=13% Similarity=0.370 Sum_probs=26.8
Q ss_pred cCCcccCcCCcccCCCCCC-CCCCCcc--cCCCeecchhhHHhh
Q psy8131 3 YKTRQWHEKCFACVVCKTP-IGTKSFI--PREQEIYCANCYEEK 43 (198)
Q Consensus 3 ~~~~~~H~~CF~C~~C~~~-L~~~~f~--~~~g~~yC~~cy~~~ 43 (198)
+....+|+ ..|..|++. +.+..|. +=.+--+|..||...
T Consensus 4 ~~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 4 GSSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp CSSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CcCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 45677888 999999974 7765553 223456788887653
No 118
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=62.46 E-value=3.3 Score=28.02 Aligned_cols=87 Identities=20% Similarity=0.524 Sum_probs=57.1
Q ss_pred CCCccCcCCCCCC-----c-eeecCCcccchhhHhhhh--ccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCC
Q psy8131 103 FTCSNCSTSLAGQ-----R-FTSREDKPFCADCFGELF--AKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSS 174 (198)
Q Consensus 103 F~C~~C~~~l~~~-----~-~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 174 (198)
+.|..|...+... . ....=|..||..|..+.. ...|..|++++... .+... ..-.+=..|..|...
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~---~l~~l---~i~~~~~~C~iC~~~ 81 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK---RYHPI---YIGSGTVSCPICMDG 81 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT---CEEEC---BCSSSSCBCTTTCCB
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc---ccccc---ccCCCCCCCCCCCCc
Confidence 6888998877431 1 344559999999987653 46899999999763 22211 122345678899887
Q ss_pred CCC-----Cc-eEecCCceeCcccccc
Q psy8131 175 LVG-----RG-FITDGEDIICPDCAKA 195 (198)
Q Consensus 175 l~~-----~~-~~~~~~~~~C~~C~~~ 195 (198)
+.. .. ....=|..+|..|..+
T Consensus 82 ~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 108 (133)
T 4ap4_A 82 YSEIVQNGRLIVSTECGHVFCSQCLRD 108 (133)
T ss_dssp HHHHHHTTCCEEEETTSBEEEHHHHHH
T ss_pred cccccccCcceEeCCCCChhhHHHHHH
Confidence 732 11 3445678888888654
No 119
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=62.23 E-value=4.7 Score=24.63 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=29.7
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh---------ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF---------AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---------~~~C~~C~~~I~~ 147 (198)
+.|..|...+.+. ....=|..||..|..+.+ ...|..|+.++..
T Consensus 13 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 13 VTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 6678887777543 334568899999986533 3467777777754
No 120
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=62.02 E-value=12 Score=22.77 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=30.7
Q ss_pred CCCccCcCCCCCCceeecCCcc-cchhhHhhhhccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKP-FCADCFGELFAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~-yC~~c~~~~~~~~C~~C~~~I~~ 147 (198)
+.|..|...+.+. ....=|.. +|..|..+. ..|..|.++|..
T Consensus 25 ~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCCE-EEETTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCE-EEcCCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 4677777666443 33455777 999998765 899999999975
No 121
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=61.40 E-value=2.8 Score=24.42 Aligned_cols=45 Identities=22% Similarity=0.631 Sum_probs=29.3
Q ss_pred CCCccCcCCCCCC-----c-eeecCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQ-----R-FTSREDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~-----~-~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
+.|..|...+.+. . ....=|..||..|..+.. ...|..|++++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 5677777766321 1 334457888888876433 4578888888765
No 122
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=60.96 E-value=5.2 Score=26.59 Aligned_cols=43 Identities=21% Similarity=0.551 Sum_probs=32.1
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh---ccCCCCCCCCCc
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF---AKRCYSCKKPIT 146 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~ 146 (198)
+.|..|...+..- ....=|..||..|..+.. ...|..|.++|.
T Consensus 16 ~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVEP-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSSC-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCce-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 6788888777543 444568999999987654 347999999885
No 123
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=60.03 E-value=6 Score=26.33 Aligned_cols=44 Identities=25% Similarity=0.544 Sum_probs=33.8
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
+.|..|...+.+. ....=|..||..|..+.. ...|..|+.+|..
T Consensus 24 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 6788888877543 445679999999986543 4589999999875
No 124
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=59.47 E-value=2.1 Score=25.71 Aligned_cols=45 Identities=22% Similarity=0.594 Sum_probs=29.2
Q ss_pred CCCccCcCCCCCC-----c-eeecCCcccchhhHhhh--hccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQ-----R-FTSREDKPFCADCFGEL--FAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~-----~-~~~~~g~~yC~~c~~~~--~~~~C~~C~~~I~~ 147 (198)
+.|..|...+... . ....=|..||..|..+. ....|..|.+++..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 5778887776321 1 23334788888887543 34678888888765
No 125
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=59.02 E-value=5.5 Score=28.52 Aligned_cols=45 Identities=16% Similarity=0.409 Sum_probs=35.0
Q ss_pred CCCCccCcCCCCCCceeecCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 102 CFTCSNCSTSLAGQRFTSREDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 102 CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
=|.|..|...+... ....-|..||..|..+.+ ...|..|+.+|..
T Consensus 18 ~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 37889998888653 556679999999987654 3489999999875
No 126
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=58.95 E-value=11 Score=22.85 Aligned_cols=45 Identities=22% Similarity=0.481 Sum_probs=28.5
Q ss_pred CCCccCcCCCCCCc--eeecCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQR--FTSREDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~--~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
+.|..|...+.... ....=+..||..|..+.+ ...|..|.++|..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 56777777774332 223347778888875432 3568888888765
No 127
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=58.94 E-value=6.8 Score=25.44 Aligned_cols=44 Identities=23% Similarity=0.546 Sum_probs=32.4
Q ss_pred CCCccCcCCCCCCcee-ecCCcccchhhHhhhh--c-cCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFT-SREDKPFCADCFGELF--A-KRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~-~~~g~~yC~~c~~~~~--~-~~C~~C~~~I~~ 147 (198)
+.|..|...+... .. ..=|..||..|..+.+ . ..|..|..++..
T Consensus 23 ~~C~IC~~~~~~p-~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRDA-RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccCc-cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 6788888887543 44 4458999999986543 2 579999999865
No 128
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=58.53 E-value=2.2 Score=32.05 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=25.0
Q ss_pred cccCcCCCCCCCCceEecCCceeCcccccc
Q psy8131 166 FMCASCQSSLVGRGFITDGEDIICPDCAKA 195 (198)
Q Consensus 166 f~C~~C~~~l~~~~~~~~~~~~~C~~C~~~ 195 (198)
.+|..|+......+-...+|+++|..|+..
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 469999998866667778899999999865
No 129
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=58.32 E-value=10 Score=26.16 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=32.7
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
+.|..|...+.. .....=|..||..|..+.. ...|..|.++|..
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 568888887754 3455568999999976532 4679999999865
No 130
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=58.19 E-value=8.3 Score=26.00 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=32.6
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
+.|..|...+.. .....=|..||..|..+.. ...|..|.+++..
T Consensus 53 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 678888877754 3445568999999986554 2389999998865
No 131
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=57.51 E-value=6.2 Score=28.15 Aligned_cols=45 Identities=29% Similarity=0.635 Sum_probs=33.8
Q ss_pred CCCCccCcCCCCCCceee-cCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 102 CFTCSNCSTSLAGQRFTS-REDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 102 CF~C~~C~~~l~~~~~~~-~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
=+.|..|...+... ... .=|..||..|..+.+ ...|..|+.+|..
T Consensus 54 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 36788888887653 444 568999999987654 3579999999854
No 132
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=57.49 E-value=6.6 Score=24.83 Aligned_cols=44 Identities=14% Similarity=0.482 Sum_probs=32.9
Q ss_pred CCCCccCcCCCCCCceeec-CCcccchhhHhhhh----ccCCCCCCCCCc
Q psy8131 102 CFTCSNCSTSLAGQRFTSR-EDKPFCADCFGELF----AKRCYSCKKPIT 146 (198)
Q Consensus 102 CF~C~~C~~~l~~~~~~~~-~g~~yC~~c~~~~~----~~~C~~C~~~I~ 146 (198)
-+.|..|...+.+- .... =|..||..|..+.+ ...|..|++++.
T Consensus 13 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 37888888877643 5555 39999999986654 258999999974
No 133
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=57.04 E-value=7.7 Score=24.96 Aligned_cols=44 Identities=25% Similarity=0.581 Sum_probs=33.6
Q ss_pred CcccCCCCCCCCCCCcccCCCeecchhhHHhhh--ccccccccccc
Q psy8131 12 CFACVVCKTPIGTKSFIPREQEIYCANCYEEKF--ATRCVKCNKTF 55 (198)
Q Consensus 12 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~~ 55 (198)
=+.|..|...+.+......=|..||..|..+.+ ...|..|..++
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 378999998888643333678899999997765 35799998865
No 134
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=55.35 E-value=7.4 Score=26.06 Aligned_cols=44 Identities=16% Similarity=0.440 Sum_probs=33.5
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
+.|..|...+... ....=|..||..|..+.+ ...|..|+.+|..
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 6788888877543 445568999999986543 2489999999876
No 135
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.09 E-value=14 Score=22.35 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=29.3
Q ss_pred CCCccCcCCCCCCceeecCCcc-cchhhHhhhhccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKP-FCADCFGELFAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~-yC~~c~~~~~~~~C~~C~~~I~~ 147 (198)
..|..|...+.+. ....=|.. +|..|..+ ...|..|.++|..
T Consensus 26 ~~C~IC~~~~~~~-~~~pCgH~~~C~~C~~~--~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI-VFVPCGHLVTCKQCAEA--VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB-CCSSSCCCCBCHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE-EEecCCCHHHHHHHhhC--CCCCccCCceecC
Confidence 3566676655432 33344777 99999865 3899999999975
No 136
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.42 E-value=6 Score=24.64 Aligned_cols=19 Identities=32% Similarity=0.791 Sum_probs=11.0
Q ss_pred CCCcccccCc--------ccCcCCCCC
Q psy8131 157 EDRHWHNDCF--------MCASCQSSL 175 (198)
Q Consensus 157 ~~~~~H~~Cf--------~C~~C~~~l 175 (198)
-++.||.+|. .|-.|.+++
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 5666666665 355665555
No 137
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.02 E-value=6.3 Score=24.47 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=5.3
Q ss_pred CCCccCcCCC
Q psy8131 103 FTCSNCSTSL 112 (198)
Q Consensus 103 F~C~~C~~~l 112 (198)
-.|..|...+
T Consensus 16 ~~C~IC~~~i 25 (74)
T 2ct0_A 16 KICNICHSLL 25 (74)
T ss_dssp CBCSSSCCBC
T ss_pred CcCcchhhHc
Confidence 3455555555
No 138
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.78 E-value=4.1 Score=24.36 Aligned_cols=43 Identities=23% Similarity=0.567 Sum_probs=31.0
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
+.|..|...+.. ....=|..||..|..+.. ...|..|.++|..
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 567788777755 444558889999987543 3678888888875
No 139
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=51.47 E-value=12 Score=26.38 Aligned_cols=44 Identities=23% Similarity=0.560 Sum_probs=31.4
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhhc---cCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELFA---KRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~---~~C~~C~~~I~~ 147 (198)
+.|..|...+... ....=|..||..|..+.+. ..|..|..+|..
T Consensus 79 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcCC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 6788887777543 4455688899999765543 378889888865
No 140
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.76 E-value=19 Score=20.11 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=21.6
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhh
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGEL 133 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~ 133 (198)
+.|..|...+.+. ....=|..||..|..+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHH
Confidence 5778888777543 33456889999998765
No 141
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=50.37 E-value=13 Score=22.06 Aligned_cols=24 Identities=25% Similarity=0.665 Sum_probs=13.2
Q ss_pred ccCcCCCCC-CCCceEecCC--ceeCc
Q psy8131 167 MCASCQSSL-VGRGFITDGE--DIICP 190 (198)
Q Consensus 167 ~C~~C~~~l-~~~~~~~~~~--~~~C~ 190 (198)
.|+.|+++| .|+..+...+ +++|.
T Consensus 22 ~C~~CKk~lqKGQtAyqrkGs~~LFCS 48 (62)
T 2das_A 22 TCANCKKPLQKGQTAYQRKGSAHLFCS 48 (62)
T ss_dssp BCTTTCCBCCTTSCCEECTTCCCEESS
T ss_pred ChhhccchhhcCceeeeecCchhheec
Confidence 466777776 4554444433 45553
No 142
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=50.27 E-value=19 Score=22.57 Aligned_cols=47 Identities=6% Similarity=-0.083 Sum_probs=35.3
Q ss_pred ccCCCCccCcCCCCCCceeecCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 100 RECFTCSNCSTSLAGQRFTSREDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 100 ~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
++=|.|..|...+.+ ......|..||..|-.+-. ...|..|++++..
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456889999887755 3566689999999865433 4689999988865
No 143
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=49.86 E-value=9.2 Score=24.25 Aligned_cols=62 Identities=18% Similarity=0.529 Sum_probs=36.3
Q ss_pred CCccCcCCCCCCceeecCCcccchhhHhhh-hccCCCCCCCCCcCCCCceEEeeCCCcccccCcccCcCCCCCCCCce
Q psy8131 104 TCSNCSTSLAGQRFTSREDKPFCADCFGEL-FAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGF 180 (198)
Q Consensus 104 ~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~-~~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~ 180 (198)
.|..|+.+|..+ ++...|..|-... ....|..|++++.. +.+-|.. =+-|..|+..++..+.
T Consensus 4 ~CP~C~~~l~~~-----~~~~~C~~C~~~~~~~afCPeCgq~Le~------lkACGA~----~yFC~~C~~LiSkkrv 66 (81)
T 2jrp_A 4 TCPVCHHALERN-----GDTAHCETCAKDFSLQALCPDCRQPLQV------LKACGAV----DYFCQNGHGLISKKRV 66 (81)
T ss_dssp CCSSSCSCCEEC-----SSEEECTTTCCEEEEEEECSSSCSCCCE------EEETTEE----EECCTTTTCCCCTTSS
T ss_pred CCCCCCCccccC-----CCceECccccccCCCcccCcchhhHHHH------HHhcCCc----CeeeccCCCEeecceE
Confidence 567777776321 2233466664211 12378889988853 5555544 2568888887765544
No 144
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.71 E-value=7.9 Score=22.71 Aligned_cols=46 Identities=22% Similarity=0.639 Sum_probs=30.7
Q ss_pred CCCCccCcCCCCC-----Cc-eeecCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 102 CFTCSNCSTSLAG-----QR-FTSREDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 102 CF~C~~C~~~l~~-----~~-~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
=+.|..|...+.. .. ....=|..||..|..+.+ ...|..|+++|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3667788776632 11 333458899999986543 4679999988753
No 145
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=48.73 E-value=18 Score=23.51 Aligned_cols=47 Identities=6% Similarity=-0.071 Sum_probs=35.8
Q ss_pred ccCCCCccCcCCCCCCceeecCCcccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 100 RECFTCSNCSTSLAGQRFTSREDKPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 100 ~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
++=|.|..|...+.+ ......|..||..|-.+-. ...|..|++++..
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 667999999887755 4666689999999965443 4678888888865
No 146
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=48.47 E-value=15 Score=24.01 Aligned_cols=45 Identities=9% Similarity=-0.065 Sum_probs=34.6
Q ss_pred cCCcccCCCCCCCCCCCcccCCCeecchhhHHhhh--ccccccccccc
Q psy8131 10 EKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKF--ATRCVKCNKTF 55 (198)
Q Consensus 10 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~~ 55 (198)
++-|.|..|...+.+. .....|..||..|-.+-+ ..+|..|++++
T Consensus 27 p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp STTTBCTTTCSBCSSE-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred cHhhCCcCccCcccCC-eECCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 5679999998888874 444589999999987765 34788888754
No 147
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.87 E-value=17 Score=21.87 Aligned_cols=46 Identities=15% Similarity=0.351 Sum_probs=29.8
Q ss_pred CCCCccCcCCCCCC-cee-ecCCcccchhhHhhh--hccCCCCCCCCCcC
Q psy8131 102 CFTCSNCSTSLAGQ-RFT-SREDKPFCADCFGEL--FAKRCYSCKKPITG 147 (198)
Q Consensus 102 CF~C~~C~~~l~~~-~~~-~~~g~~yC~~c~~~~--~~~~C~~C~~~I~~ 147 (198)
-..|..|...+... ... ..=+..||..|..+. ....|..|.++|..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 35677777776433 222 334778888887543 34678888888865
No 148
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=47.11 E-value=16 Score=23.72 Aligned_cols=45 Identities=4% Similarity=-0.106 Sum_probs=34.2
Q ss_pred cCCcccCCCCCCCCCCCcccCCC-eecchhhHHhhh--ccccccccccc
Q psy8131 10 EKCFACVVCKTPIGTKSFIPREQ-EIYCANCYEEKF--ATRCVKCNKTF 55 (198)
Q Consensus 10 ~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~cy~~~~--~~~C~~C~~~~ 55 (198)
++-|.|..|...+.+. .....| ..||+.|..+-+ ..+|..|++++
T Consensus 20 p~~~~CpI~~~~m~dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp CTTTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cHhcCCcCccccccCC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 5669999998888874 444566 999999987765 35788888854
No 149
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=46.97 E-value=10 Score=23.00 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=21.2
Q ss_pred cCCCCCCCCCcCCCCceEEeeCCCccc
Q psy8131 136 KRCYSCKKPITGIGGTRFISFEDRHWH 162 (198)
Q Consensus 136 ~~C~~C~~~I~~~~~~~~~~~~~~~~H 162 (198)
..|+-|+.+|.++-|-.+|...|+.|+
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTH 30 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEE
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEE
Confidence 579999999988767677777777764
No 150
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.94 E-value=11 Score=22.92 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=21.5
Q ss_pred cCCCCCCCCCcCCCCceEEeeCCCccc
Q psy8131 136 KRCYSCKKPITGIGGTRFISFEDRHWH 162 (198)
Q Consensus 136 ~~C~~C~~~I~~~~~~~~~~~~~~~~H 162 (198)
..|+-|+.+|.++-|..+|...|+.|+
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEE
Confidence 579999999998767777777777765
No 151
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.70 E-value=19 Score=20.75 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCCCccCcCCCCCCceeecCCcccchhhHhhhh
Q psy8131 102 CFTCSNCSTSLAGQRFTSREDKPFCADCFGELF 134 (198)
Q Consensus 102 CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~ 134 (198)
=+.|..|...+.+. ....=|..||..|..+..
T Consensus 20 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQKP-VTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSSC-EECTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCCe-EEeCCCCcchHHHHHHHH
Confidence 36788888877653 445668999999987654
No 152
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=46.09 E-value=23 Score=22.95 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=35.4
Q ss_pred ccCCCCccCcCCCCCCceeecCC-cccchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 100 RECFTCSNCSTSLAGQRFTSRED-KPFCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 100 ~~CF~C~~C~~~l~~~~~~~~~g-~~yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
++=|.|..|...+.+ ......| ..||..|..+-+ ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 556899999887755 4566677 999999975443 4678999888865
No 153
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=46.09 E-value=8.5 Score=25.73 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=31.4
Q ss_pred cCCCCCCCCCcCCCCceEEeeCCCcccccCc---------ccCcCCCCCCCCc
Q psy8131 136 KRCYSCKKPITGIGGTRFISFEDRHWHNDCF---------MCASCQSSLVGRG 179 (198)
Q Consensus 136 ~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~~ 179 (198)
..|..|...+.. .++..-|+.|+..|+ +|..|..++....
T Consensus 19 ~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 19 YECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCcCChhhcC----eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 468888888765 566678999998886 8999999986543
No 154
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.21 E-value=28 Score=20.66 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=30.0
Q ss_pred CCCccCcCCCCCCcee--ecCCcccchhhHhhh--hccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFT--SREDKPFCADCFGEL--FAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~--~~~g~~yC~~c~~~~--~~~~C~~C~~~I~~ 147 (198)
..|..|...+...... ..=+..||..|..+. ....|..|.++|..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4577777777433222 245788899997643 34689999998875
No 155
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.27 E-value=31 Score=22.26 Aligned_cols=45 Identities=22% Similarity=0.532 Sum_probs=28.8
Q ss_pred CCCccCcCCC----CCCceeecC--CcccchhhHhhh---hccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSL----AGQRFTSRE--DKPFCADCFGEL---FAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l----~~~~~~~~~--g~~yC~~c~~~~---~~~~C~~C~~~I~~ 147 (198)
-.|..|+..+ +++.|+.=+ +-+.|.+||+-. -...|..|+.+...
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3577777765 233444322 678999998632 34679999887653
No 156
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=43.07 E-value=13 Score=22.61 Aligned_cols=15 Identities=33% Similarity=0.997 Sum_probs=12.1
Q ss_pred cCCCeecchhhHHhh
Q psy8131 29 PREQEIYCANCYEEK 43 (198)
Q Consensus 29 ~~~g~~yC~~cy~~~ 43 (198)
-=||.+||..||.+.
T Consensus 24 gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 24 GCDGDLYCARCFREG 38 (67)
T ss_dssp TTTSEEECSSHHHHH
T ss_pred CCCCceehHHHHHHH
Confidence 446889999999875
No 157
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=42.46 E-value=10 Score=26.18 Aligned_cols=38 Identities=13% Similarity=0.392 Sum_probs=30.3
Q ss_pred cCCCCCCCCCcCCCCceEEeeCCCcccccCc--------ccCcCCCCCCC
Q psy8131 136 KRCYSCKKPITGIGGTRFISFEDRHWHNDCF--------MCASCQSSLVG 177 (198)
Q Consensus 136 ~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~ 177 (198)
..|..|...+.. .++..-|+.||..|. .|..|..++..
T Consensus 54 ~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE----AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC----ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 369999888765 566778999999885 49999988854
No 158
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=42.17 E-value=14 Score=26.21 Aligned_cols=43 Identities=19% Similarity=0.543 Sum_probs=33.4
Q ss_pred cccCCCCCCCCCCCcccCCCeecchhhHHhhhc---cccccccccc
Q psy8131 13 FACVVCKTPIGTKSFIPREQEIYCANCYEEKFA---TRCVKCNKTF 55 (198)
Q Consensus 13 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~~ 55 (198)
+.|..|...+.+......=|..||..|..+.+. ..|..|..++
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 689999888887433336688999999987654 3699999865
No 159
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=41.84 E-value=38 Score=19.71 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=28.9
Q ss_pred CCCccCcCCCCCC-c-eeecCCcccchhhHhhh--hccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQ-R-FTSREDKPFCADCFGEL--FAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~-~-~~~~~g~~yC~~c~~~~--~~~~C~~C~~~I~~ 147 (198)
..|..|...+... . ....=|..||..|..+. ....|..|..+|..
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4577777766422 2 22334788888887543 24678888888865
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=41.61 E-value=26 Score=26.65 Aligned_cols=48 Identities=6% Similarity=-0.013 Sum_probs=36.5
Q ss_pred cccCCCCccCcCCCCCCceeecCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 99 HRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 99 H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
-+.-|.|..|...+.+ +.....|..||..|..+-. ...|..|+.++..
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3567899999888754 4666689999999975433 3459999999875
No 161
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=41.53 E-value=11 Score=28.81 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=27.2
Q ss_pred ccCCCCCCCCCcCCCCceEEeeCCCcccccCc----------ccCcCCCCCCCC
Q psy8131 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCF----------MCASCQSSLVGR 178 (198)
Q Consensus 135 ~~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf----------~C~~C~~~l~~~ 178 (198)
.+.|..|+..|..+ ..=.--+..||..|+ +|..|+.+.+++
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 36788888888752 111125677888888 688888776543
No 162
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=40.80 E-value=17 Score=25.83 Aligned_cols=43 Identities=14% Similarity=0.437 Sum_probs=34.2
Q ss_pred CcccCCCCCCCCCCCcccCCCeecchhhHHhhhc---cccccccccc
Q psy8131 12 CFACVVCKTPIGTKSFIPREQEIYCANCYEEKFA---TRCVKCNKTF 55 (198)
Q Consensus 12 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~~ 55 (198)
=|.|..|...|.+. ....-|-.||..|..+.+. .+|..|..++
T Consensus 18 ~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 18 KYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 38999999998864 3356899999999988653 3899998865
No 163
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=40.38 E-value=31 Score=20.09 Aligned_cols=44 Identities=27% Similarity=0.473 Sum_probs=27.5
Q ss_pred CCccCcCCCCCCceee-cCCcc-cchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 104 TCSNCSTSLAGQRFTS-REDKP-FCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 104 ~C~~C~~~l~~~~~~~-~~g~~-yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
.|..|-....+..+.. .=|.. +|..|..+.. ...|..|.++|..
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3555554443322222 33666 8999987654 3489999999975
No 164
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=39.83 E-value=31 Score=22.96 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred cCccccCCCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCCCCCCC
Q psy8131 96 EPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPI 145 (198)
Q Consensus 96 ~~~H~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I 145 (198)
+.||..|.. |.. +-+|+-||..| .|..|+++.
T Consensus 37 ~~fH~~Cl~-------L~~----~P~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 37 KAYHLLCLN-------LTQ----PPYGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp CEECTGGGT-------CSS----CCSSCCCCGGG-------BCTTTCSBC
T ss_pred cccccccCc-------CCc----CCCCCEECCCC-------CCCcCCCCC
Confidence 468887753 322 22577889877 477787764
No 165
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=37.97 E-value=14 Score=25.69 Aligned_cols=44 Identities=18% Similarity=0.548 Sum_probs=34.2
Q ss_pred CCcccCCCCCCCCCCCcccCCCeecchhhHHhhhc---cccccccccc
Q psy8131 11 KCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFA---TRCVKCNKTF 55 (198)
Q Consensus 11 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~~ 55 (198)
+=|.|..|...|.+. ....=|-.||..|..+.+. +.|..|..++
T Consensus 30 ~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 348999999888764 4456789999999988654 4788888853
No 166
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=36.93 E-value=15 Score=16.15 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=8.4
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 567788777654
No 167
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.83 E-value=22 Score=15.71 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=9.3
Q ss_pred cccCCCCCCCCCC
Q psy8131 13 FACVVCKTPIGTK 25 (198)
Q Consensus 13 F~C~~C~~~L~~~ 25 (198)
|.|..|++.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 5788888877643
No 168
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=34.78 E-value=16 Score=25.66 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=31.6
Q ss_pred cCCCCCCCCCcCCCCceEEeeCCCcccccCc---------ccCcCCCCCCCC
Q psy8131 136 KRCYSCKKPITGIGGTRFISFEDRHWHNDCF---------MCASCQSSLVGR 178 (198)
Q Consensus 136 ~~C~~C~~~I~~~~~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~ 178 (198)
..|..|...+.. .++..-|+.|+..|. .|..|..++...
T Consensus 79 ~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 579999888765 567788999999885 799999998654
No 169
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.07 E-value=18 Score=16.17 Aligned_cols=12 Identities=33% Similarity=0.919 Sum_probs=8.9
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 678888877664
No 170
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=34.03 E-value=15 Score=21.99 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=17.3
Q ss_pred cCCCCCCCCCcCCCCceEEeeC---CCcccccC
Q psy8131 136 KRCYSCKKPITGIGGTRFISFE---DRHWHNDC 165 (198)
Q Consensus 136 ~~C~~C~~~I~~~~~~~~~~~~---~~~~H~~C 165 (198)
..|..|++|+.+. ...|.-. ...||..|
T Consensus 9 ~~C~~C~~p~~~~--~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 9 YPCGICTNEVNDD--QDAILCEASCQKWFHRIC 39 (65)
T ss_dssp CBCTTTCSBCCTT--SCEEEBTTTTCCEEEHHH
T ss_pred CcCccCCCccCCC--CCeEecccCccccCchhc
Confidence 4688899988652 2445444 55567644
No 171
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.64 E-value=75 Score=18.74 Aligned_cols=42 Identities=14% Similarity=0.400 Sum_probs=28.5
Q ss_pred CCCccCcCCCCCCceeecCCcc-cchhhHhhhhccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKP-FCADCFGELFAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~-yC~~c~~~~~~~~C~~C~~~I~~ 147 (198)
..|..|-....+. .+.-=|.. +|..|..+ ...|..|.++|..
T Consensus 16 ~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~--~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 16 KDCVVCQNGTVNW-VLLPCRHTCLCDGCVKY--FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCSSSSSSCCCC-EETTTTBCCSCTTHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCcCcCCCCE-EEECCCChhhhHHHHhc--CCCCCCCCcchhc
Confidence 3466665544332 33344666 99999875 4899999999976
No 172
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=33.44 E-value=38 Score=21.37 Aligned_cols=32 Identities=19% Similarity=0.668 Sum_probs=25.0
Q ss_pred cccCCCCCCCCCCCccc---CCCeecchhhHHhhh
Q psy8131 13 FACVVCKTPIGTKSFIP---REQEIYCANCYEEKF 44 (198)
Q Consensus 13 F~C~~C~~~L~~~~f~~---~~g~~yC~~cy~~~~ 44 (198)
+.|..|...|.++.|++ ....-+|..|-....
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sI 50 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESI 50 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHH
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccHHHH
Confidence 67999999999999984 556667877776543
No 173
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.23 E-value=9.1 Score=25.16 Aligned_cols=39 Identities=18% Similarity=0.522 Sum_probs=28.3
Q ss_pred cccCCCCCCCCCCCcccCCCeecchhhHHhh-hcccccccccccc
Q psy8131 13 FACVVCKTPIGTKSFIPREQEIYCANCYEEK-FATRCVKCNKTFF 56 (198)
Q Consensus 13 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~-~~~~C~~C~~~~~ 56 (198)
-.|..|..+|+. .++..+|..|...- ..+.|..|++++.
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH
Confidence 689999999874 35666688887532 2458999999764
No 174
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=31.98 E-value=22 Score=16.04 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=9.4
Q ss_pred cccCCCCCCCCCC
Q psy8131 13 FACVVCKTPIGTK 25 (198)
Q Consensus 13 F~C~~C~~~L~~~ 25 (198)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 6788888877643
No 175
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.73 E-value=50 Score=20.41 Aligned_cols=17 Identities=24% Similarity=0.776 Sum_probs=9.7
Q ss_pred CcccccCc----------ccCcCCCCC
Q psy8131 159 RHWHNDCF----------MCASCQSSL 175 (198)
Q Consensus 159 ~~~H~~Cf----------~C~~C~~~l 175 (198)
+.||.+|. .|..|+..+
T Consensus 42 h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 42 HFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp CCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 55666554 455665555
No 176
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.58 E-value=40 Score=21.38 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=32.3
Q ss_pred CCCCccCcCCCCCCceee-cCCcccchhhHhhhhc--------cCCCC--CCCC-CcC
Q psy8131 102 CFTCSNCSTSLAGQRFTS-REDKPFCADCFGELFA--------KRCYS--CKKP-ITG 147 (198)
Q Consensus 102 CF~C~~C~~~l~~~~~~~-~~g~~yC~~c~~~~~~--------~~C~~--C~~~-I~~ 147 (198)
=|.|..|...+.+ .... ..|..||..|-.+.+. ..|.. |.+. +..
T Consensus 7 ~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 7 GFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred EeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4788999887765 4666 5899999999754432 47888 8766 543
No 177
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=31.52 E-value=23 Score=15.77 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=9.5
Q ss_pred cccCCCCCCCCCC
Q psy8131 13 FACVVCKTPIGTK 25 (198)
Q Consensus 13 F~C~~C~~~L~~~ 25 (198)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 6788888877653
No 178
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=30.70 E-value=11 Score=27.04 Aligned_cols=40 Identities=25% Similarity=0.601 Sum_probs=23.7
Q ss_pred ccCCCCCCCCCCC-------cccCCCeecchhhHHhh--hcc--ccccccc
Q psy8131 14 ACVVCKTPIGTKS-------FIPREQEIYCANCYEEK--FAT--RCVKCNK 53 (198)
Q Consensus 14 ~C~~C~~~L~~~~-------f~~~~g~~yC~~cy~~~--~~~--~C~~C~~ 53 (198)
.|.+|...+.... +......-+|..|+... |.+ .|..|.+
T Consensus 29 ~C~~CH~~~~~~~~g~~~~t~a~~~~~~~C~~CH~g~~af~~~~~C~~CH~ 79 (158)
T 3oue_A 29 KCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHP 79 (158)
T ss_dssp CGGGTBTTTBCSSSCCCCCCHHHHHTTCGGGGTBSSSSBCCTTSCHHHHCG
T ss_pred ChhhhccChhcccccccccccccCCCCCchhhhcCCcccCChhhhchhhhh
Confidence 6777876664432 33333345788888633 443 5777776
No 179
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=30.18 E-value=49 Score=20.23 Aligned_cols=41 Identities=17% Similarity=0.474 Sum_probs=29.1
Q ss_pred CCccCcCCCCCCceeecCCcc-cchhhHhhhhccCCCCCCCCCcC
Q psy8131 104 TCSNCSTSLAGQRFTSREDKP-FCADCFGELFAKRCYSCKKPITG 147 (198)
Q Consensus 104 ~C~~C~~~l~~~~~~~~~g~~-yC~~c~~~~~~~~C~~C~~~I~~ 147 (198)
.|..|...+.+. .+..=|.. +|..|..+. ..|..|..+|..
T Consensus 20 ~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEINS-TFCPCGHTVCCESCAAQL--QSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCCE-EEETTCBCCBCHHHHTTC--SBCTTTCCBCCE
T ss_pred EeEEeCcccCcE-EEECCCCHHHHHHHHHhc--CcCCCCCchhhC
Confidence 466666555443 33445776 899998764 599999999975
No 180
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.84 E-value=11 Score=16.65 Aligned_cols=12 Identities=17% Similarity=0.559 Sum_probs=8.7
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 577888877664
No 181
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.98 E-value=24 Score=21.42 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=16.5
Q ss_pred cccCCCCCCCCCCCcccCCCeecchhh
Q psy8131 13 FACVVCKTPIGTKSFIPREQEIYCANC 39 (198)
Q Consensus 13 F~C~~C~~~L~~~~f~~~~g~~yC~~c 39 (198)
++|..|+.+|. +...+|.++|..|
T Consensus 11 L~CP~ck~~L~---~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPLR---YLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBCE---EETTTTEEEETTT
T ss_pred hCCCCCCCcCe---EeCCCCEEEcCCC
Confidence 68999998875 3345667766554
No 182
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=28.91 E-value=17 Score=24.51 Aligned_cols=12 Identities=33% Similarity=0.755 Sum_probs=9.3
Q ss_pred cCCCCCCCCCcC
Q psy8131 136 KRCYSCKKPITG 147 (198)
Q Consensus 136 ~~C~~C~~~I~~ 147 (198)
..|..|++.|.-
T Consensus 21 A~Ck~Ck~kI~K 32 (114)
T 1v9x_A 21 SSCKTCKSVINK 32 (114)
T ss_dssp CBCSSSCCBCCS
T ss_pred CCchhhCCccCC
Confidence 578888888875
No 183
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.42 E-value=38 Score=20.99 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=25.5
Q ss_pred CCCCCCCCCcCCCCceEE--eeCCCcccccCcccCcCCCCCCCCceEecCC-ceeCcccc
Q psy8131 137 RCYSCKKPITGIGGTRFI--SFEDRHWHNDCFMCASCQSSLVGRGFITDGE-DIICPDCA 193 (198)
Q Consensus 137 ~C~~C~~~I~~~~~~~~~--~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~C~ 193 (198)
.|..|++.-.+. .+| ..-++.||..|.. .+|... -.| .-+|..|.
T Consensus 28 ~C~vC~~~~~~~---~ll~CD~C~~~yH~~Cl~-----Ppl~~~----P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPN---MQLLCDECNVAYHIYCLN-----PPLDKV----PEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCST---TEEECSSSCCEEETTSSS-----SCCSSC----CCSSCCCCTTTC
T ss_pred CCcCcCCcCCCC---CEEEcCCCCccccccccC-----CCccCC----CCCCCcCCcCcc
Confidence 477787754331 333 3445778987763 344321 134 67788874
No 184
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.13 E-value=15 Score=16.34 Aligned_cols=12 Identities=25% Similarity=0.767 Sum_probs=8.6
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 678888777654
No 185
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.09 E-value=25 Score=21.36 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=15.6
Q ss_pred cccCCCCCCCCCCCcccCCCeecchhh
Q psy8131 13 FACVVCKTPIGTKSFIPREQEIYCANC 39 (198)
Q Consensus 13 F~C~~C~~~L~~~~f~~~~g~~yC~~c 39 (198)
++|..|+.+|. +...+|.+.|..|
T Consensus 9 L~CP~ck~~L~---~~~~~~~LiC~~c 32 (68)
T 2hf1_A 9 LVCPLCKGPLV---FDKSKDELICKGD 32 (68)
T ss_dssp CBCTTTCCBCE---EETTTTEEEETTT
T ss_pred eECCCCCCcCe---EeCCCCEEEcCCC
Confidence 57899998875 3334566655543
No 186
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=28.07 E-value=46 Score=24.26 Aligned_cols=47 Identities=6% Similarity=-0.008 Sum_probs=36.1
Q ss_pred ccCCCCccCcCCCCCCceeecCCcccchhhHhhhh---ccCCCCCCCCCcC
Q psy8131 100 RECFTCSNCSTSLAGQRFTSREDKPFCADCFGELF---AKRCYSCKKPITG 147 (198)
Q Consensus 100 ~~CF~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 147 (198)
+.-|.|..|...+.+ +.....|..||..|-.+-+ +..|..|+.++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 667899999887764 4667789999999965432 3469999998865
No 187
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=27.90 E-value=45 Score=21.75 Aligned_cols=37 Identities=24% Similarity=0.518 Sum_probs=24.7
Q ss_pred cccCcCCcccCCCCC-CCCCCCcc--cCCCeecchhhHHhh
Q psy8131 6 RQWHEKCFACVVCKT-PIGTKSFI--PREQEIYCANCYEEK 43 (198)
Q Consensus 6 ~~~H~~CF~C~~C~~-~L~~~~f~--~~~g~~yC~~cy~~~ 43 (198)
..+|+. ..|..|++ ++.+..|. .=.+--+|..||...
T Consensus 26 ~~~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 26 LDKHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp CSSCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred ccccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 357887 89999996 67765553 333455777777653
No 188
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=27.54 E-value=90 Score=18.02 Aligned_cols=44 Identities=23% Similarity=0.490 Sum_probs=27.9
Q ss_pred CCccCcCCCCCCceee-cCCcc-cchhhHhhhh--ccCCCCCCCCCcC
Q psy8131 104 TCSNCSTSLAGQRFTS-REDKP-FCADCFGELF--AKRCYSCKKPITG 147 (198)
Q Consensus 104 ~C~~C~~~l~~~~~~~-~~g~~-yC~~c~~~~~--~~~C~~C~~~I~~ 147 (198)
.|..|-....+..+.. .=|.. +|..|..+.. ...|..|.++|..
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 4556655554432221 33666 7999987543 3579999999975
No 189
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.48 E-value=26 Score=21.25 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=15.5
Q ss_pred cccCCCCCCCCCCCcccCCCeecchhh
Q psy8131 13 FACVVCKTPIGTKSFIPREQEIYCANC 39 (198)
Q Consensus 13 F~C~~C~~~L~~~~f~~~~g~~yC~~c 39 (198)
++|..|+.+|. +...+|.++|..|
T Consensus 9 L~CP~ck~~L~---~~~~~~~LiC~~c 32 (68)
T 2jr6_A 9 LVCPVTKGRLE---YHQDKQELWSRQA 32 (68)
T ss_dssp CBCSSSCCBCE---EETTTTEEEETTT
T ss_pred eECCCCCCcCe---EeCCCCEEEcCCC
Confidence 68999998875 3334566655543
No 190
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=27.29 E-value=17 Score=24.11 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=10.2
Q ss_pred ccCCCCCCCCCcC
Q psy8131 135 AKRCYSCKKPITG 147 (198)
Q Consensus 135 ~~~C~~C~~~I~~ 147 (198)
...|..|++.|.-
T Consensus 25 Ra~Ck~C~~kI~K 37 (106)
T 2dmj_A 25 RASCKKCSESIPK 37 (106)
T ss_dssp CCBCSSSCCBCCT
T ss_pred CCcchhhCCccCC
Confidence 4578889998875
No 191
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=27.19 E-value=11 Score=27.86 Aligned_cols=25 Identities=28% Similarity=0.743 Sum_probs=18.8
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhh
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGEL 133 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~ 133 (198)
.+|+.|+...... |+.+|..|+.+.
T Consensus 164 ~~C~~CGE~~~~~------g~~~C~~C~~~~ 188 (191)
T 3d00_A 164 VLCPQCREAYPAQ------DGELCLSCQGGS 188 (191)
T ss_dssp EECTTTCCEEEGG------GCSSCHHHHTTC
T ss_pred EECCcCCCChhhC------CCcCCccccCCC
Confidence 5799998765332 899999998654
No 192
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=26.98 E-value=40 Score=25.59 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=35.2
Q ss_pred CcCCcccCCCCCCCCCCCcccCCCeecchhhHHhhhc---cccccccccc
Q psy8131 9 HEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFA---TRCVKCNKTF 55 (198)
Q Consensus 9 H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~~ 55 (198)
=+.-|.|..|...+.+. .....|..||..|..+-+. ..|..|+.++
T Consensus 205 ~~~~~~c~i~~~~~~dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCSTTBCTTTCSBCSSE-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCcccCCcCcCCHhcCC-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 35679999999888864 4456899999999876553 3488898864
No 193
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=32.83 E-value=13 Score=16.83 Aligned_cols=12 Identities=17% Similarity=0.886 Sum_probs=9.0
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 678888887764
No 194
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.41 E-value=28 Score=21.20 Aligned_cols=24 Identities=25% Similarity=0.664 Sum_probs=15.5
Q ss_pred cccCCCCCCCCCCCcccCCCeecchhh
Q psy8131 13 FACVVCKTPIGTKSFIPREQEIYCANC 39 (198)
Q Consensus 13 F~C~~C~~~L~~~~f~~~~g~~yC~~c 39 (198)
++|..|+.+|. +...+|.++|..|
T Consensus 9 L~CP~ck~~L~---~~~~~~~LiC~~c 32 (69)
T 2pk7_A 9 LACPICKGPLK---LSADKTELISKGA 32 (69)
T ss_dssp CCCTTTCCCCE---ECTTSSEEEETTT
T ss_pred eeCCCCCCcCe---EeCCCCEEEcCCC
Confidence 68899998875 3334566655543
No 195
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=25.97 E-value=28 Score=21.27 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=5.4
Q ss_pred cCCCCCCCCC
Q psy8131 136 KRCYSCKKPI 145 (198)
Q Consensus 136 ~~C~~C~~~I 145 (198)
-+|..|+..+
T Consensus 29 Y~C~~CG~~~ 38 (70)
T 1twf_L 29 YICAECSSKL 38 (70)
T ss_dssp EECSSSCCEE
T ss_pred EECCCCCCcc
Confidence 3566665553
No 196
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.36 E-value=25 Score=21.51 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=16.0
Q ss_pred cccCCCCCCCCCCCcccCCCeecchhh
Q psy8131 13 FACVVCKTPIGTKSFIPREQEIYCANC 39 (198)
Q Consensus 13 F~C~~C~~~L~~~~f~~~~g~~yC~~c 39 (198)
++|..|+.+|. +...+|.++|..|
T Consensus 9 L~CP~ck~~L~---~~~~~~~LiC~~c 32 (70)
T 2js4_A 9 LVCPVCKGRLE---FQRAQAELVCNAD 32 (70)
T ss_dssp CBCTTTCCBEE---EETTTTEEEETTT
T ss_pred eECCCCCCcCE---EeCCCCEEEcCCC
Confidence 68899998885 3334566655543
No 197
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=25.06 E-value=21 Score=15.96 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=8.3
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 567788777654
No 198
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=24.97 E-value=53 Score=20.52 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCCccCcCCCCCC-ce-eecCCcccchhhHhhh--hccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQ-RF-TSREDKPFCADCFGEL--FAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~-~~-~~~~g~~yC~~c~~~~--~~~~C~~C~~~I~~ 147 (198)
..|..|-..+... .. ...=|..||..|..+. ....|..|..+|..
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 5677887766432 22 2334788888887543 24578888888764
No 199
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.56 E-value=20 Score=15.91 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=8.5
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 678888777654
No 200
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.50 E-value=36 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=22.1
Q ss_pred cCCCCCCCCCcCCCCceEEeeCCCccc
Q psy8131 136 KRCYSCKKPITGIGGTRFISFEDRHWH 162 (198)
Q Consensus 136 ~~C~~C~~~I~~~~~~~~~~~~~~~~H 162 (198)
..|+.|+.+|.++-|-.+|...|..|+
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQ 30 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEE
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEE
Confidence 579999999998777778877777775
No 201
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.49 E-value=33 Score=16.25 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=8.8
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 678888877664
No 202
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=23.95 E-value=42 Score=21.09 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=15.3
Q ss_pred CCcccCcCCcccCCCCC-CCCCCCc
Q psy8131 4 KTRQWHEKCFACVVCKT-PIGTKSF 27 (198)
Q Consensus 4 ~~~~~H~~CF~C~~C~~-~L~~~~f 27 (198)
....+|.. +.|..|++ ++.+..|
T Consensus 14 ~~~~~H~~-~~Cd~C~~~pI~G~Ry 37 (82)
T 2fc7_A 14 SGFVQHVG-FKCDNCGIEPIQGVRW 37 (82)
T ss_dssp TTSCEESS-CCCSSSCCSSEESCEE
T ss_pred ccCCeeCc-CCCCCCCCCcceeceE
Confidence 34566766 89999986 5655433
No 203
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.92 E-value=20 Score=15.89 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=7.8
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 567777766543
No 204
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.85 E-value=33 Score=16.30 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=10.3
Q ss_pred CcccCCCCCCCCC
Q psy8131 12 CFACVVCKTPIGT 24 (198)
Q Consensus 12 CF~C~~C~~~L~~ 24 (198)
=|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4789999888764
No 205
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.62 E-value=17 Score=16.45 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=8.5
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 567888777654
No 206
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.44 E-value=34 Score=16.44 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.3
Q ss_pred CcccCCCCCCCCC
Q psy8131 12 CFACVVCKTPIGT 24 (198)
Q Consensus 12 CF~C~~C~~~L~~ 24 (198)
=|.|..|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4889999888764
No 207
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.90 E-value=23 Score=15.83 Aligned_cols=12 Identities=17% Similarity=0.678 Sum_probs=8.2
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|.|..|++.+..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 567778776653
No 208
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=22.87 E-value=39 Score=28.51 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=21.3
Q ss_pred CCCCccCcCCCCC----------CceeecCCccc--chhhHh
Q psy8131 102 CFTCSNCSTSLAG----------QRFTSREDKPF--CADCFG 131 (198)
Q Consensus 102 CF~C~~C~~~l~~----------~~~~~~~g~~y--C~~c~~ 131 (198)
-+.|.-|++.|+. -..+.++|.+| |..|-.
T Consensus 400 ~~~~~~c~~~l~~~~~~~f~~~~l~~v~r~~~~~~~c~~c~~ 441 (523)
T 3py7_A 400 GLDCLWCREPLTEVDAFRCMVKDFHVVIREGCRYGACTICLE 441 (523)
T ss_dssp TCEETTTCCBCCHHHHHHHHHTTCCCEEETTEEEECCHHHHH
T ss_pred CcEEEecCCcCCHHHHHHHHhcCeEEEEECCeeeeehHHHHH
Confidence 3578888888863 22456788887 888864
No 209
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=22.77 E-value=1.1e+02 Score=18.51 Aligned_cols=10 Identities=30% Similarity=1.059 Sum_probs=6.1
Q ss_pred CceeCccccc
Q psy8131 185 EDIICPDCAK 194 (198)
Q Consensus 185 ~~~~C~~C~~ 194 (198)
+..||..|..
T Consensus 55 g~w~Cp~C~~ 64 (71)
T 1wen_A 55 GKWFCPRCSQ 64 (71)
T ss_dssp SCCCCTTTSS
T ss_pred CCEECCCCCc
Confidence 4566776644
No 210
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=22.49 E-value=29 Score=24.80 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=21.7
Q ss_pred cCCCCCCCCCcCCCCceEEeeCCCccc
Q psy8131 136 KRCYSCKKPITGIGGTRFISFEDRHWH 162 (198)
Q Consensus 136 ~~C~~C~~~I~~~~~~~~~~~~~~~~H 162 (198)
..|+.|+.+|.++-|-.+|...|+.|+
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~ 30 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFR 30 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEE
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEE
Confidence 469999999998777777877777775
No 211
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=22.47 E-value=29 Score=24.87 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=21.9
Q ss_pred cCCCCCCCCCcCCCCceEEeeCCCccc
Q psy8131 136 KRCYSCKKPITGIGGTRFISFEDRHWH 162 (198)
Q Consensus 136 ~~C~~C~~~I~~~~~~~~~~~~~~~~H 162 (198)
..|+.|+.+|.++-|-.+|...|+.|+
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~ 32 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFF 32 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEE
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEE
Confidence 569999999998777777877777775
No 212
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.95 E-value=27 Score=19.40 Aligned_cols=23 Identities=30% Similarity=0.703 Sum_probs=12.0
Q ss_pred cccCCCCC-CCCCCCcccCCCeecchh
Q psy8131 13 FACVVCKT-PIGTKSFIPREQEIYCAN 38 (198)
Q Consensus 13 F~C~~C~~-~L~~~~f~~~~g~~yC~~ 38 (198)
+.|..|+. +|. |-...|++.|..
T Consensus 6 ~~CP~C~~~~l~---~d~~~gelvC~~ 29 (50)
T 1pft_A 6 KVCPACESAELI---YDPERGEIVCAK 29 (50)
T ss_dssp CSCTTTSCCCEE---EETTTTEEEESS
T ss_pred EeCcCCCCcceE---EcCCCCeEECcc
Confidence 46788876 442 323345554443
No 213
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.36 E-value=61 Score=19.42 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=19.5
Q ss_pred CCccCcCCCCCCceeecCCcccchhhH
Q psy8131 104 TCSNCSTSLAGQRFTSREDKPFCADCF 130 (198)
Q Consensus 104 ~C~~C~~~l~~~~~~~~~g~~yC~~c~ 130 (198)
+|+.|++.+.-..|.=+=|..||..+-
T Consensus 17 rC~~C~kkvgl~~f~CrCg~~FC~~HR 43 (64)
T 1wfh_A 17 RCTVCRKRVGLTGFMCRCGTTFCGSHR 43 (64)
T ss_dssp CCTTTCCCCCTTCEECSSSCEECTTTC
T ss_pred cChhhCCccCccCEEeecCCEeccccC
Confidence 567888877654566667888887763
No 214
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.93 E-value=25 Score=17.44 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=9.8
Q ss_pred cccCCCCCCCCC
Q psy8131 13 FACVVCKTPIGT 24 (198)
Q Consensus 13 F~C~~C~~~L~~ 24 (198)
|+|.+|+.++.+
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 688999888776
No 215
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.78 E-value=71 Score=17.87 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=20.1
Q ss_pred CCCccCcCCCCCCceeecCCcccchhhHhhhhccCCCCCCCCCcC
Q psy8131 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITG 147 (198)
Q Consensus 103 F~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~~ 147 (198)
++|-.|++.++.+.. ..+.+.+|.-|+-.|.-
T Consensus 4 Y~C~rCg~~fs~~el-------------~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQL-------------KVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp -CCCCTTTTCCCCCS-------------CCCSSSCCTTTCCSCEE
T ss_pred EEeeccCCCccHHHH-------------hhCCCcccCccCcEEEE
Confidence 467788887755422 23346788888877753
No 216
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=20.16 E-value=67 Score=21.02 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=14.4
Q ss_pred EeeCCCcccccCc--------ccCcCCCCC
Q psy8131 154 ISFEDRHWHNDCF--------MCASCQSSL 175 (198)
Q Consensus 154 ~~~~~~~~H~~Cf--------~C~~C~~~l 175 (198)
+..-++.||..|. .|..|.+.+
T Consensus 70 ~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 70 WGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp EETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred ecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 3456777887776 466666654
Done!